NA ----> NA
Intron 1 GTACGTGGTA ... TGTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.54 | 201 | 7.8 | 63 |
| A2 | 11.36 | 153.9 | 17.7 | 20.8 |
| A3 | 16.35 | 141.9 | 9.5 | 29.9 |
| A4 | 15.73 | 162 | 3.6 | 31.3 |
| A5 | 16.22 | 59.4 | 0.9 | 12.3 |
| A6 | 15.85 | 452.8 | 32.5 | 90.5 |
| A7 | 15.16 | 621.6 | 41.6 | 116.2 |
| A8 | 14.29 | 713.6 | 58.5 | 128.8 |
| A9 | 15.18 | 617.3 | 50.2 | 117.8 |
| A10 | 12.16 | 465.3 | 31.5 | 68.5 |
>TRINITY_DN119120_c6_g1_i3 from sample A1 / Example spliced isoformCATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTC
AATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTT
GGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGT
GGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGA
AGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAA
GGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAA
ATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
>TRINITY_DN119120_c6_g1_i8 from sample A1 / Example unspliced isoform:CTTTATTCTATTTTACTTTATTTGACTGCCTTTTGCCTTTTATAAGAGATCGTTTGGTACTCTGGCTTTGTAATGACATCATTGTACTCAACAATCCCATTTACCTACTTTTGTGGTCATTGGACATTAATAAAATTATCTTATCTCCATTAATATGAATAGTAGAGAAACACATATGTATTTCATATATAAATTTATTT
GGCTGTTTTTCATTTGTTTGGTTACCTGGCATTGGTCATGTATAAGATGTCTTTTGTCCACACATTTGTTTTTATATGTTTTCCCTCCGAGATTCTTTCATAAATTGTTGTATTTAGTATTTACAGTATTATTTGTCAATTTATATATGGCATGTTCTTCCTGTAATGAAATACTTTTCTTTTGACAGAATTTGTTTTTT
TTCTTGCTATGGCCCGGCATTAATATAAAAAACATGCTGCTCATTTTTCACTACTTTATGTACGGTTTACCATGTTGTGAAGTTGTCCTCAGTTTCAAAATATCTGACCATTTACGAATTGTTAGCTGTTCTCAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGGTGAGATTCATGGTTTTCTGTA
TTCTGAGTTTTGAGTATTGTCACAGTGTTTTTATATAATTTTGCAGTGAAAAAATTAAAATACAAAATGAAGTCTTGATATTGCCTTGATATCTATCGCCCTCAAAACAAAAAGAACCAACCACATCCTTGTGACATTTTCTGATAATGGATCAGTATTATCCTTCTCCCGACCCTAGCATTCTGAAATTATTATTTCCA
TACTTACGCACAATTTATTGGAGCAACCATTTTGCAATGAGAATGTATCTCAATTCTATTCGATATAGATAAAGAACAAACCACCTCTCATCTAGCGAGCCTATCCCCATAGCAAACAATTATACATTTTCAGTTGATAAGAATGGTACATCAGAGACGTGGCCATGAATTTTAAGCCTCTAATTCTCCCTGGCCGACAG
TAGTAACACAGTGCCTGTTAACAATATGGATATGCACTGGAAGAAACAAAAAAGGAAAAGTGCATCCTCTCCTTGAAAGCATCTGCACTCTTTGGTTCTTTGGATGTGGGTTATGTCTGGTTTAAATTTTTGCGGGGGTGGTTTTCAGCAATGTCGATTTTGCCTTTGTTTTGGGGTGAAGCTAATCATGCTTTGCTCTG
TTGATACCAGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGTTCAATTCATACAACTTATTTTCTTAGTTCTGCATTTATCAAGTTAATGTTTTGAACTGTTATTAATAATATCTATAATTTG
TGACCAACCACAAACAAACATTGTCAACATGAAGGCTAGAGAGGCAGAAATTATTCAATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGgtacgtggtatctgaaactacttagatttttccttctgatttcagccttcccctaaatttgtgtttgtct
tgttgattggatgatgttaaaattgtttggcagATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTAT
CAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATA
GACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACA
TGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTT
TCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAA
TTACAATAAGTAAATAGCACT
Intron 2 GTACCAGTCA ... TTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.21 | 404.8 | 2 | 122 |
| A2 | 20.48 | 420.3 | 0 | 108 |
| A3 | 24.42 | 441.3 | 1 | 142 |
| A4 | 25.33 | 310.3 | 0 | 105 |
| A5 | 24.64 | 208.8 | 0 | 68 |
| A6 | 22.38 | 758 | 0 | 218 |
| A7 | 23.35 | 1315.5 | 0 | 400 |
| A8 | 24.89 | 882 | 0 | 292 |
| A9 | 22.99 | 1313 | 2 | 391 |
| A10 | 20.88 | 1242.3 | 0 | 327 |
>TRINITY_DN42790_c1_g1_i2 from sample A9 / Example spliced isoformCAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAGGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGAGTTGCAAAG
TCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATGGAAGCTGAA
GAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCTCAGATGCCT
CAGCAATTACCTCAATGAGAGGAGAGAACTAGAACCGGAGAAATACAACAAAGCAGGATTCTTTGTTTTTCATGCCTCTGGTATCATGGCAATTTTGTTACAGGAAGTACTGAGTGCATATAAGAAAATGGAGACAGGCAATCTGAACATCAGAAGTTCCAAAAGGATGGCAAATGTCTTGACTTTGTTTCAGAGTATTG
CTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGGTGAGATTCATGGTTTTCTGTATTCTGAGTTTTGAGTATTGTCACAGTGTTTTTATATAATTTTGCAGTGAAAAAATTAAAATACAAAATGAAGTCTTGATATTGCCTTGATATCTATCGCCCTCAAAACAAAAAGAACCAACCACATCCTTGTGACATTTTCT
GATAATGGATCAGTATTATCCTTCTCCCGACCCTAGCATTCTGAAATTATTATTTCCATACTTACGCACAATTTATTGGAGCAACCATTTTGCAATGAGAATGTATCTCAATTCTATTCGATATAGATAAAGAACAAACCACCTCTCATCTAGCGAGCCTATCCCCATAGCAAACAATTATACATTTTCAGTTGATAAGA
ATGGTACATCAGAGACGTGGCCATGAATTTTAAGCCTCTAATTCTCCCTGGCCGACAGTAGTAACACAGTGCCTGTTAACAATATGGATATGCACTGGAAGAAACAAAAAAGGAAAAGTGCATCCTCTCCTTGAAAGCATCTGCACTCTTTGGTTCTTTGGATGTGGGTTATGTCTGGTTTAAATTTTTGCGGGGGTGGT
TTTCAGCAATGTCGATTTTGCCTTTGTTTTGGGGTGAAGCTAATCATGCTTTGCTCTGTTGATACCAGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGTTCAATTCATACAACTTATTTTCT
TAGTTCTGCATTTATCAAGTTAATGTTTTGAACTGTTATTAATAATATCTATAATTTGTGACCAACCACAAACAAACATTGTCAACATGAAGGCTAGAGAGGCAGAAATTATTCAATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCAC
ATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAAT
AATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGA
CTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTC
ATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAA
TTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACTA
>TRINITY_DN42790_c1_g1_i8 from sample A9 / Example unspliced isoform:TATCATGGCAATTTTGTTACAGgtaccagtcattcaaacctcaggaaagtgcaaagattatactcttattgacttcaataccttctaatggcaactaattctttttattttttttacagGAAGTACTGAGTGCATATAAGAAAATGGAGACAGGCAATCTGAACATCAGAAGTTCCAAAAGGATGGCAAATGTCTTGACT
TTGTTTCAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGGTGAGATTCATGGTTTTCTGTATTCTGAGTTTTGAGTATTGTCACAGTGTTTTTATATAATTTTGCAGTGAAAAAATTAAAATACAAAATGAAGTCTTGATATTGCCTTGATATCTATCGCCCTCAAAACAAAAAGAACCAACCACAT
CCTTGTGACATTTTCTGATAATGGATCAGTATTATCCTTCTCCCGACCCTAGCATTCTGAAATTATTATTTCCATACTTACGCACAATTTATTGGAGCAACCATTTTGCAATGAGAATGTATCTCAATTCTATTCGATATAGATAAAGAACAAACCACCTCTCATCTAGCGAGCCTATCCCCATAGCAAACAATTATACA
TTTTCAGTTGATAAGAATGGTACATCAGAGACGTGGCCATGAATTTTAAGCCTCTAATTCTCCCTGGCCGACAGTAGTAACACAGTGCCTGTTAACAATATGGATATGCACTGGAAGAAACAAAAAAGGAAAAGTGCATCCTCTCCTTGAAAGCATCTGCACTCTTTGGTTCTTTGGATGTGGGTTATGTCTGGTTTAAA
TTTTTGCGGGGGTGGTTTTCAGCAATGTCGATTTTGCCTTTGTTTTGGGGTGAAGCTAATCATGCTTTGCTCTGTTGATACCAGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGTTCAATTC
ATACAACTTATTTTCTTAGTTCTGCATTTATCAAGTTAATGTTTTGAACTGTTATTAATAATATCTATAATTTGTGACCAACCACAAACAAACATTGTCAACATGAAGGCTAGAGAGGCAGAAATTATTCAATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAA
AGTGGTACGTGGTATCTGAAACTACTTAGATTTTTCCTTCTGATTTCAGCCTTCCCCTAAATTTGTGTTTGTCTTGTTGATTGGATGATGTTAAAATTGTTTGGCAGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTG
GAAATTTGCAAGCAATTGGTAAGTTACTCCATGGAGCAGTATCTTTATCAATAGAAGTCAAATTAGTTTCCCTTCTTACCATTTTAATTTTTCCATGAATTTTACCTCTATGAATGTATTGTTTTCCTTTGTAGGTTTCAGTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTAC
ATCCTGCTTTGTAATCATTCCGGGTAATTTGTTTATGCAGTTTGTGTACATATTCCTTATACTTGCTATTTACACACTGCACATGAAAAAAACTGGATAGCCTAAGTATTTGTTTATGCAGTTTGTGTGCATATTCCTTATGTTACTTGCTATTTGCACTTCGCACATGAAATAAACTGGATGGCCTAAGCATTGAGAAC
CACTATTTCGTTTTATGTATGCCAGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGTAATTCAAAGTACTATCTATTGGCTCCATGTCTATAAACTTATCCTTGCAGAGTCAAAGGAGAACCAAGTGTATTGCAGGATGTATGCATTTGCATAATGGGGA
CCATAACATAAGAAAATCAGCTTCTCTGGGGCACATCAATATCATGTAATTATTGTTGCCTGTTTTATTTGTGGCTGCAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAA
TCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGC
TTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTT
GCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACTA
Intron 3 GTGAGATTCA ... TTGATACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.49 | 381.3 | 39.3 | 53.1 |
| A2 | 5.05 | 379.1 | 25.6 | 19.6 |
| A3 | 9.79 | 442.7 | 34.8 | 46.6 |
| A4 | 6.8 | 374.4 | 23.2 | 26.9 |
| A5 | 4.25 | 142 | 12.1 | 6.1 |
| A6 | 6.65 | 750.6 | 47.8 | 52.5 |
| A7 | 7.11 | 1300.4 | 89.1 | 96.9 |
| A8 | 10.54 | 1055.4 | 76 | 121.9 |
| A9 | 4.51 | 1208.9 | 88.6 | 55.9 |
| A10 | 7.91 | 1094.7 | 70.5 | 91.6 |
>TRINITY_DN119120_c6_g1_i3 from sample A1 / Example spliced isoformCATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTC
AATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTT
GGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGT
GGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGA
AGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAA
GGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAA
ATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
>TRINITY_DN119120_c6_g1_i12 from sample A1 / Example unspliced isoform:CATAGGAGTCATTTTCGTGCTCCCACTTTGTATTGACATCATTTTGTACCCAACAGTCCCTTTGACCTATTTTAGTGGTCATTCATTGGACATTAATAAAATTATCCCACTTTGTATTGACATCATTTTGTACCCAACAGTCCCTTTGACCTATTTTAGTGGTCATTCATTGGACATTAATAAAATTATCTTATCTCCAT
TAATATGAATAGTAGAGAAACACATATGTATTTCATATATAAATTTATTTGGCTGTTTTTCATTTGTTTGGTTACCTGGCATTGGTCATGTATAAGATGTCTTTTGTCCACACATTTGTTTTTATATGTTTTCCCTCCGAGATTCTTTCATAAATTGTTGTATTTAGTATTTACAGTATTATTTGTCAATTTATATATGG
CATGTTCTTCCTGTAATGAAATACTTTTCTTTTGACAGAATTTGTTTTTTTTCTTGCTATGGCCCGGCATTAATATAAAAAACATGCTGCTCATTTTTCACTACTTTATGTACGGTTTACCATGTTGTGAAGTTGTCCTCAGTTTCAAAATATCTGACCATTTACGAATTGTTAGCTGTTCTCAGAGTATTGCTGCCAAC
AAAGAAACAAGAGGCAAGCTTGTGAACGgtgagattcatggttttctgtattctgagttttgagtattgtcacagtgtttttatataattttgcagtgaaaaaattaaaatacaaaatgaagtcttgatattgccttgatatctatcgccctcaaaacaaaaagaaccaaccacatccttgtgacattttctgataatgg
atcagtattatccttctcccgaccctagcattctgaaattattatttccatacttacgcacaatttattggagcaaccattttgcaatgagaatgtatctcaattctattcgatatagataaagaacaaaccacctctcatctagcgagcctatccccatagcaaacaattatacattttcagttgataagaatggtaca
tcagagacgtggccatgaattttaagcctctaattctccctggccgacagtagtaacacagtgcctgttaacaatatggatatgcactggaagaaacaaaaaaggaaaagtgcatcctctccttgaaagcatctgcactctttggttctttggatgtgggttatgtctggtttaaatttttgcgggggtggttttcagca
atgtcgattttgcctttgttttggggtgaagctaatcatgctttgctctgttgataccagCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGTTCAATTCATACAACTTATTTTCTTAGTTCTG
CATTTATCAAGTTAATGTTTTGAACTGTTATTAATAATATCTATAATTTGTGACCAACCACAAACAAACATTGTCAACATGAAGGCTAGAGAGGCAGAAATTATTCAATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGGTACGTGGTATCTGAAACTA
CTTAGATTTTTCCTTCTGATTTCAGCCTTCCCCTAAATTTGTGTTTGTCTTGTTGATTGGATGATGTTAAAATTGTTTGGCAGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCA
GTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGT
GGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCT
TTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCAT
TACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGC
CCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
Intron 4 GTAATTTGTT ... TGTATGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.1 | 278.5 | 39.4 | 23 |
| A2 | 7.62 | 198.2 | 25.5 | 18.4 |
| A3 | 5.65 | 188.3 | 21.2 | 14.9 |
| A4 | 8.77 | 157.2 | 28.7 | 16.9 |
| A5 | 6.67 | 69.9 | 9.7 | 6.1 |
| A6 | 5.8 | 604.6 | 108.9 | 45 |
| A7 | 8.63 | 856.4 | 93 | 94.9 |
| A8 | 6.88 | 996 | 140.3 | 86.7 |
| A9 | 7.92 | 906.9 | 123.2 | 88.4 |
| A10 | 9.29 | 681.8 | 75.7 | 81.9 |
>TRINITY_DN119120_c6_g1_i3 from sample A1 / Example spliced isoformCATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTC
AATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTT
GGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGT
GGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGA
AGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAA
GGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAA
ATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
>TRINITY_DN119120_c6_g1_i7 from sample A1 / Example unspliced isoform:CATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGGAGAGAACTAGAACCGGAGAAATACAACAAAGCAGGATTCTTTGTTTTTCATGCCTCTGGTATCATGGCAATTTTGTTACAGGAAGTACTGAGTGCATATAAGAAAATGGAGACAGGCAATCTGAACATCAGAAGTTCCAAAAGGATGGCAAATGTCTTGACTTTGTTTC
AGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTCAATGGGCTCTCAAAAGCAACATCATG
GATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCT
TCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGgtaatttgtttatgcagtttgtgtacatattccttatacttgctatttacacactgcacatgaaaaaaactggatagcctaagtatttgtttatgcagtttgtgtgcatattccttatgttacttgctatttgcacttcgcacatgaaataa
actggatggcctaagcattgagaaccactatttcgttttatgtatgccagGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGTAATTCAAAGTACTATCTATTGGCTCCATGTCTATAAACTTATCCTTGCAGAGTCAAAGGAGAACCAAGTGTATTGCAG
GATGTATGCATTTGCATAATGGGGACCATAACATAAGAAAATCAGCTTCTCTGGGGCACATCAATATCATGTAATTATTGTTGCCTGTTTTATTTGTGGCTGCAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTA
TAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAA
CATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTT
TTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTC
AATTACAATAAGTAAATAGCACT
Intron 5 GTAATTCAAA ... GTGGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.28 | 412.1 | 41.1 | 118 |
| A2 | 22.96 | 319 | 40.1 | 95 |
| A3 | 20.13 | 349.4 | 31 | 88 |
| A4 | 20.46 | 217.7 | 24.3 | 56 |
| A5 | 23.39 | 144.2 | 12.4 | 44 |
| A6 | 23.75 | 1130.6 | 128.6 | 352 |
| A7 | 21.65 | 1723.5 | 186.9 | 476 |
| A8 | 24.58 | 1834 | 227 | 597 |
| A9 | 23.51 | 1559.7 | 198.1 | 479 |
| A10 | 22.54 | 1354.4 | 142.3 | 394 |
>TRINITY_DN119120_c6_g1_i3 from sample A1 / Example spliced isoformCATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTC
AATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTT
GGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGT
GGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGA
AGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAA
GGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAA
ATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
>TRINITY_DN119120_c6_g1_i7 from sample A1 / Example unspliced isoform:CATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGGAGAGAACTAGAACCGGAGAAATACAACAAAGCAGGATTCTTTGTTTTTCATGCCTCTGGTATCATGGCAATTTTGTTACAGGAAGTACTGAGTGCATATAAGAAAATGGAGACAGGCAATCTGAACATCAGAAGTTCCAAAAGGATGGCAAATGTCTTGACTTTGTTTC
AGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTCAATGGGCTCTCAAAAGCAACATCATG
GATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCT
TCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGTAATTTGTTTATGCAGTTTGTGTACATATTCCTTATACTTGCTATTTACACACTGCACATGAAAAAAACTGGATAGCCTAAGTATTTGTTTATGCAGTTTGTGTGCATATTCCTTATGTTACTTGCTATTTGCACTTCGCACATGAAATAA
ACTGGATGGCCTAAGCATTGAGAACCACTATTTCGTTTTATGTATGCCAGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGgtaattcaaagtactatctattggctccatgtctataaacttatccttgcagagtcaaaggagaaccaagtgtattgcag
gatgtatgcatttgcataatggggaccataacataagaaaatcagcttctctggggcacatcaatatcatgtaattattgttgcctgttttatttgtggctgcagGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTA
TAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAA
CATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTT
TTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTC
AATTACAATAAGTAAATAGCACT
Intron 6 GTTCAATTCA ... CAACATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.56 | 240.4 | 45.8 | 17.1 |
| A2 | 8.01 | 197 | 10 | 24.7 |
| A3 | 11.47 | 220.1 | 40.8 | 16.4 |
| A4 | 7.57 | 224.6 | 20.9 | 16.2 |
| A5 | 4.85 | 85.5 | 5 | 3.8 |
| A6 | 7.87 | 505.6 | 30.9 | 56.2 |
| A7 | 7.93 | 800.9 | 59.5 | 79.2 |
| A8 | 11.43 | 719.6 | 92.5 | 94.4 |
| A9 | 9.03 | 662.8 | 59.8 | 73 |
| A10 | 9.09 | 635.7 | 63.5 | 64.7 |
>TRINITY_DN119120_c6_g1_i3 from sample A1 / Example spliced isoformCATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTC
AATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTT
GGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGT
GGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGA
AGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAA
GGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAA
ATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
>TRINITY_DN119120_c6_g1_i12 from sample A1 / Example unspliced isoform:CATAGGAGTCATTTTCGTGCTCCCACTTTGTATTGACATCATTTTGTACCCAACAGTCCCTTTGACCTATTTTAGTGGTCATTCATTGGACATTAATAAAATTATCCCACTTTGTATTGACATCATTTTGTACCCAACAGTCCCTTTGACCTATTTTAGTGGTCATTCATTGGACATTAATAAAATTATCTTATCTCCAT
TAATATGAATAGTAGAGAAACACATATGTATTTCATATATAAATTTATTTGGCTGTTTTTCATTTGTTTGGTTACCTGGCATTGGTCATGTATAAGATGTCTTTTGTCCACACATTTGTTTTTATATGTTTTCCCTCCGAGATTCTTTCATAAATTGTTGTATTTAGTATTTACAGTATTATTTGTCAATTTATATATGG
CATGTTCTTCCTGTAATGAAATACTTTTCTTTTGACAGAATTTGTTTTTTTTCTTGCTATGGCCCGGCATTAATATAAAAAACATGCTGCTCATTTTTCACTACTTTATGTACGGTTTACCATGTTGTGAAGTTGTCCTCAGTTTCAAAATATCTGACCATTTACGAATTGTTAGCTGTTCTCAGAGTATTGCTGCCAAC
AAAGAAACAAGAGGCAAGCTTGTGAACGGTGAGATTCATGGTTTTCTGTATTCTGAGTTTTGAGTATTGTCACAGTGTTTTTATATAATTTTGCAGTGAAAAAATTAAAATACAAAATGAAGTCTTGATATTGCCTTGATATCTATCGCCCTCAAAACAAAAAGAACCAACCACATCCTTGTGACATTTTCTGATAATGG
ATCAGTATTATCCTTCTCCCGACCCTAGCATTCTGAAATTATTATTTCCATACTTACGCACAATTTATTGGAGCAACCATTTTGCAATGAGAATGTATCTCAATTCTATTCGATATAGATAAAGAACAAACCACCTCTCATCTAGCGAGCCTATCCCCATAGCAAACAATTATACATTTTCAGTTGATAAGAATGGTACA
TCAGAGACGTGGCCATGAATTTTAAGCCTCTAATTCTCCCTGGCCGACAGTAGTAACACAGTGCCTGTTAACAATATGGATATGCACTGGAAGAAACAAAAAAGGAAAAGTGCATCCTCTCCTTGAAAGCATCTGCACTCTTTGGTTCTTTGGATGTGGGTTATGTCTGGTTTAAATTTTTGCGGGGGTGGTTTTCAGCA
ATGTCGATTTTGCCTTTGTTTTGGGGTGAAGCTAATCATGCTTTGCTCTGTTGATACCAGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGgttcaattcatacaacttattttcttagttctg
catttatcaagttaatgttttgaactgttattaataatatctataatttgtgaccaaccacaaacaaacattgtcaacatgaagGCTAGAGAGGCAGAAATTATTCAATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGGTACGTGGTATCTGAAACTA
CTTAGATTTTTCCTTCTGATTTCAGCCTTCCCCTAAATTTGTGTTTGTCTTGTTGATTGGATGATGTTAAAATTGTTTGGCAGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCA
GTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGT
GGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCT
TTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCAT
TACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGC
CCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
Intron 7 GTAAGTTACT ... TCCTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.63 | 229.9 | 19.3 | 28.9 |
| A2 | 4.45 | 180.3 | 8.6 | 18.7 |
| A3 | 4.05 | 160.7 | 7.4 | 20.4 |
| A4 | 7.43 | 148 | 12.3 | 20.4 |
| A5 | 7.61 | 79.4 | 6.8 | 6 |
| A6 | 7.52 | 579.7 | 48.7 | 52 |
| A7 | 6.93 | 688.9 | 52.8 | 73.6 |
| A8 | 6.08 | 866.6 | 58.8 | 83.5 |
| A9 | 6.03 | 775.6 | 52.1 | 69.6 |
| A10 | 4.84 | 522.6 | 27.5 | 49.2 |
>TRINITY_DN119120_c6_g1_i3 from sample A1 / Example spliced isoformCATCGATCACAAAATTAATCATTTATATTATATATAATTGAGATGGACCTACCCTCACATTGAAGTAGCATGTCATGCGCCAAAAACAATTGGAATTTTCACTACGTAAGTTAGGCTCAAGACATTTGGAAAGAGACCAAAGTTTCATGTCCCAGAAGACTACTGCATTTGGAAATCTGTGTTCAAGGCTCACCGATTGA
GTTGCAAAGTCAGGACAAAGAATACTGCAATTCATTCACAATAACAATACGTTCGGAATAAAATGACAGGAAGATTGGAGTCGTGGACACCAAACAATTTTGCAGGCTCAAACTCAGCGCGCTCAGAGATGAGACCTTCGAAAATCACAATGTCGGATTCCTTCCACGCCAACCAGGCAGTCTATCACAACGTAGTCATG
GAAGCTGAAGAACACCCCAATACCATGGAAGATCGAACTCTCGCGCTTCTTCAAGACTCCAAAATAGATCAAGCGATTGGTGAGCACAAAGCGAGGAAAAGAGGAGGACGTAAGCATAAGGCGCAGTGGATGAAAAGACCCATGGCCTTATCAGAGGTCATTCTTGAGCTATACGACGAGGACTTACGAGAAAATGCGCT
CAGATGCCTCAGCAATTACCTCAATGAGAGTATTGCTGCCAACAAAGAAACAAGAGGCAAGCTTGTGAACGCACACATTCCAAACTACTTGGTCCCTTTTATATTGTTTGAGAATACTGAGGACTATATCGAGAATGTCAGAGCTATCTGCCTCTCTGTCATTGGTATCCTTGTTCAGGCTAGAGAGGCAGAAATTATTC
AATGGGCTCTCAAAAGCAACATCATGGATGTTTGTTTGCATGCAATTGAAATTGGGAATGAGCTTTCCAAAGTGATTGCCATGCACATCATAGAGTCAATTTTACAAGACAATTGTGGAATCTCTTATGTTTGTGAATCAACCAGATCTGTGCTTGGTAATCTCTTGGAAATTTGCAAGCAATTGGTTTCAGTTTCAGTT
GGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTTTACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGT
GGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGCTTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGA
AGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATTTTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAA
GGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCCATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAA
ATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAATAAGTAAATAGCACT
>TRINITY_DN119120_c6_g1_i6 from sample A1 / Example unspliced isoform:TTGGAAATTTGCAAGCAATTGgtaagttactccatggagcagtatctttatcaatagaagtcaaattagtttcccttcttaccattttaatttttccatgaattttacctctatgaatgtattgttttcctttgtagGTTTCAGTTTCAGTTGGTGAACAAGACCTTTCTCCTCGTCTTCTATTTCATATTATCAGATTT
TACATCCTGCTTTGTAATCATTCCGGGGCTTTGGAAATAATAAAGGACGATCTGCCACCACCTCTCCTTGATAACACATTTTGTGAGATCACTGAGGAATTTCCTGTTATTAACCAGCTACTTAATCAACTTTTATTGAATGTGGGTAAGGTGGAGGAAGTTGATATCAAGGACAAAACCACAATTGTTTATAGACATGC
TTACCATCAGTCCAAATCCACCTCTCTGTGTGCTTCGACTCCCCTGAAAACAATAAATATGAACAGAGAATACTGGTCCTCGGCTGTTTCTCGCAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATAGCCCCATCTCAACCTTTAGTGGGAAGGAGAATTAACCTTTTTTTACTTCTTTGCTCCATGCAACATGTGATT
TTCTGTTGACATGAGCTTATATGAAGAATCCATTTGTCATTTGTTTAAGACCTTGCATAAATCCATCTGCTGAATGTAACCTACCAATGTTTTCTGCTGCCAAAGAATTTTGTAAAAATGACGATGACAAGTTCAAAGGCCATTACAGAAAAGGGAAGATTCATTCAATTGTTTCTGTTATGCTTTTTTTTTTTCGCTCC
ATGCAACAAGCAATTTGCTGTTGACATGATATAAGGAATTCATTTGTAATTTGTTTAAGACCTTGGATAAACTCATCTGCTGGTTGTAATCTACTGGTATTTTTCTACTGCAAAAGAACTTTGTAAAAATGATATTCAAAGGCCCTTCCAAAATGGGAAGATTCAATCGATTGTTCTAAGTACATTCTGTCAATTACAAT
AAGTAAATAGCACT