sp|Q6R0H1|LHY_ARATH ----> Protein LHY
Intron 1 GTACATTTCT ... ATTACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 6 | 13 | 9 |
| A2 | 75 | 4 | 16 | 8 |
| A3 | 72.73 | 3 | 8 | 8 |
| A4 | 65.71 | 6 | 6 | 17 |
| A5 | 69.23 | 2 | 2 | 7 |
| A6 | 60 | 1 | 1 | 2 |
| A7 | 50 | 2 | 3 | 1 |
| A8 | 86.67 | 1 | 5 | 8 |
| A9 | 33.33 | 3 | 2 | 1 |
| A10 | 28.57 | 5 | 4 | 0 |
>TRINITY_DN98908_c0_g1_i7 from sample A4 / Example spliced isoformCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGAC
CTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGCGGGCGCCAATTTGTTTTGAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATG
GAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAG
TGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACT
CTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGGTGCGGGATTTCCCATACTCTTCTAGTAATGATTTTATCCATTCTGTTTTACTCTCCATGAACAAAAAAAATTCAATTTGACTTTTTTAAACAATAGGAAGAACTCGTGACCTCTCATGAGAATTGAAG
AGGCTTTAAGTTTATTATTAATATGAAGCCAGCAATACCCTATGATGTTTTCCAACTTGTATGAATTGTTTTTCAAATCTTCCTAATTAACGATGTTCAATTGAAATTTCACAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGAT
GTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAG
ATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAA
GTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGGTATTTTTTCTATCATCTCTCATGTGCACATGGGAAAGAAAATAGAATTTGTACGTATGGGACTGGATTTATGAGCTCTAACTGTGAATTTAAGCTGATGCATTGTGGACAAATGGCAAAGGCACTTTTCCAGT
CAATCATTTTCATTTTCACATCTATTGTATTTCAAGTATAATATTTAGTGAGATTGATCA
>TRINITY_DN98908_c0_g1_i4 from sample A4 / Example unspliced isoform:ATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGAT
GGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAGTTTCTTCTTTTTCTCTTTTGTTT
GTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAACCGTCAATTCTATCGACATGGTT
ACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAA
AATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGgtacatttcttgatgc
aattaaagtttttacagattgattactttggttcatgaatacggcttgctgcttttaaattttgtggaatctctctttcaaggttccagttttctctaaatttagcgctctggcaagttatcctggttgcatttccacgttctctctacttctagtaagctttgttcatttaattactgcagCGGGCGCCAATTTGTTTT
GAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGGTATATGATTTATTGGCATTTGAAGTCCTTCGCATTTGTGTTTTTCTTTGTTTTTTGACAATGTGCTGAATGACCATATATTTATAGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAA
AGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGC
TGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTC
GAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAAC
TCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAA
TAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAG
AAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATGGCATCT
GCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAG
TAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCA
Intron 2 GTCGAACTCT ... TGGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.01 | 16 | 26 | 30.9 |
| A2 | 46.96 | 15.1 | 19.7 | 7 |
| A3 | 39.84 | 18 | 12.8 | 11 |
| A4 | 63.12 | 7 | 13 | 11 |
| A5 | 60 | 4 | 7 | 5 |
| A6 | 47.83 | 6 | 4 | 7 |
| A7 | 53.57 | 26 | 36 | 24 |
| A8 | 54.31 | 21 | 19.9 | 30 |
| A9 | 48.74 | 11 | 14.9 | 6 |
| A10 | 61.1 | 21 | 32 | 34 |
>TRINITY_DN110699_c0_g1_i24 from sample A2 / Example spliced isoformAAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTTAAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAG
TGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCG
GCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTC
GTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAGTTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTAT
AACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAACCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTA
CAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGAT
CGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTT
CAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTG
GAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCT
TGACGGTGAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAA
TAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGT
ATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGGTATTTTTTCTATCATCTCTCATGTGCACATGGGAAAGAAAATAGAATTTGTACGTATGGGACTGGATTTATGAGCTCTAACTGTGAATTTAAGCTGATGCATTGTGGACAAATGGCAAAG
>TRINITY_DN110699_c0_g1_i11 from sample A2 / Example unspliced isoform:AAGGGAATGTTCTAAGGTGCGGGATTTCCCATACTCTTCTAGTAATGATTTTATCCATTCTGTTTTACTCTCCATGAACAAAAAAAAATTCAATTTGACTTTTTTAAACAATAGGAAGAACTCGTGACCTCTCATGAGAATTGAAGAGGCTTTAAGTTTATTATTAATATGAAGCCAGCAATACCCTATGATGTTTTCCA
ACTTGTATGAATTGTTTTTCAAATCTTCCTAATTAACGATGTTCAATTGAAATTTCACAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGgtcgaactcttgttgttcaaaactcatttac
agatgatttcttatttacttccatgaaaaatgaagcaatatgttctgagatttatgctgaaaataaagatgctccatgtgaagatgaaattttggattgcagGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCAT
CAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAA
CAGAGAAACAAG
Intron 3 GTACATTTCT ... CTCTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 6 | 13 | 9 |
| A2 | 78.95 | 4 | 16 | 14 |
| A3 | 69.7 | 5 | 8 | 15 |
| A4 | 85.19 | 2 | 6 | 17 |
| A5 | 42.86 | 2 | 2 | 1 |
| A6 | 60 | 1 | 1 | 2 |
| A7 | 30.55 | 3 | 2.7 | 0 |
| A8 | 85.71 | 1 | 5 | 7 |
| A9 | 33.33 | 2 | 2 | 0 |
| A10 | 30 | 7 | 4 | 2 |
>TRINITY_DN108859_c0_g1_i11 from sample A3 / Example spliced isoformCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAA
GGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAG
TTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAA
CCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAA
ACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTC
AGCACAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCCAGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCA
CTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTC
AACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGG
AATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAA
GCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGC
AAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAA
GATTGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGT
GTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATC
TCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTGC
>TRINITY_DN108859_c0_g1_i6 from sample A3 / Example unspliced isoform:CCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAA
GGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAG
TTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAA
CCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAA
ACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTC
AGCACAGgtacatttcttgatgcaattaaagtttttacagattgattactttggttcatgaatacggcttgctgcttttaaattttgtggaatctctctttcaagGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCTAGTAAGCTTTGTTCATTTAATTAC
TGCAGCGGGCGCCAATTTGTTTTGAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGA
AGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGA
ACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTC
TAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAAT
TAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAG
AAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATTGCA
TCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAA
AAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATG
CATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTGC
Intron 4 GTATTTTTTC ... CCAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.93 | 12 | 3.7 | 10.5 |
| A2 | 16.39 | 14 | 4.6 | 2.8 |
| A3 | 25.2 | 26 | 4.6 | 9.8 |
| A4 | 33.73 | 12 | 9.2 | 6.5 |
| A5 | 37.8 | 3 | 0 | 2.3 |
| A6 | 35.12 | 8 | 3.7 | 4.8 |
| A7 | 32.44 | 31 | 11.2 | 16.1 |
| A8 | 26.52 | 23 | 9.5 | 8.5 |
| A9 | 24.69 | 22 | 5.5 | 7.8 |
| A10 | 29.04 | 20 | 3.7 | 8.8 |
>TRINITY_DN116064_c0_g1_i13 from sample A1 / Example spliced isoformGTACGAGAAGTGAGAGACGTGCTTGAACGGAGCAAAAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCG
ACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTC
GAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAG
GAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGT
TCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTA
TGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTT
CTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAA
CCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATGGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTC
AGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAG
ATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTATAAACTTCATAA
CTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTCAGTTATTCCCG
>TRINITY_DN116064_c0_g1_i4 from sample A1 / Example unspliced isoform:AAAACAGAGAAACAAGgtattttttctatcatctctcatgtgcacatgggaaagaaaatagaatttgtacgtatgggactggatttatgagctctaactgtgaatttaagctgatgcattgtggacaaatggcaaaggcacttttccagtcaatcattttccttttcacatctattgtatttccagtataatatttagtg
agcttgatcaactggggatggtaagacatcttcctctaatgtattttaactctgaattttatgtcccaatttcagTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACA
AAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATGGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAG
AAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGC
CGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTATAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTCAGTTATTCCCG
Intron 5 GTACATTTCT ... CGGTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 15 | 13 | 17 |
| A2 | 50.72 | 17 | 16 | 19 |
| A3 | 71.43 | 4 | 8 | 12 |
| A4 | 58.62 | 6 | 6 | 11 |
| A5 | 60 | 4 | 2 | 10 |
| A6 | 23.08 | 5 | 1 | 2 |
| A7 | 47.83 | 6 | 3 | 8 |
| A8 | 47.37 | 5 | 5 | 4 |
| A9 | 42.86 | 14 | 2 | 19 |
| A10 | 40 | 9 | 4 | 8 |
>TRINITY_DN116064_c0_g1_i2 from sample A1 / Example spliced isoformGCCGGAGAGAAAATCAAATGCCATGTGTCCAGTAGCTTCCATCTGATTGAAGATTCCCGATGTCAAATCCCTTCGACATTCTGTGCGGGCGGAATATAAGCTGTCATATCAAGAACCCTAGAAAACAGAAGAAGATATGGAAGAAAAAAAAACACAATTGCGCCAAATTTGACATGAAAGTGCTAGAAATTTCGAGCAAG
GTCAGAGAGTTTTATTTTGATTTGAATTCTGTATACGGTGAGCCTAAAAGCCCTAATTTTTGTTTAATTCTGATGGTGAAACTAAAACCTAATTTTGTATTGTTCTGATATCTGTTTTCGTAATAAATTCCGACACCGCGGAAAAAAAATTACGGCTCCTTCGTGGCGGAGGAAGGGCCGTCCATCTCCATGGCATCCGG
CATCCTTATCTGCAGGGCGGCTCCATTAGAGAAAGCATAGAAAGGAAAAAAGCATGACACGCGTCTGCTGTTTATCCTGAGAAGGCATAGAGCCCACAGAACACAGATATTTATTCATAAATATCTTCCTTTCAGCCGGCCGGCAAATTAACATGAACACGAATCCCCGAAGCTGCTGCTGACATTGCCAGCCAATCGTG
CCAGGTTTTATGGAAATAGGATTCTTTTTCATCGTCATCCGGATAGATCTTCATTGGCTTCGGTTGTTTTAAAATTGATGACTATCATGGCTTGGCAACTTTTATATTTATTATAAGAATTAAATGCTACGCGGCGCTCGCCTTACACGAGCATTCGGAAATTTTAGTTTGGTCATTTGATGGAATCTGATGATGAAAAT
TTCTGAGTTTGACAAGGAATTTATATATTTTTAAATCTCATGATAAAAAGGATTCTTTTATTGTCAAAGAGTATAAAAAGTCACAACTTTTATCTTTTCGGTCCGACAGAAATAAAAGATAACCTTACAATTTTGTCAATTACAGACCGACACTGTAAAAATCTTGCGTGTAAATTCTTTATATGAAATGGTAAGAGCTA
AAGCGAGCTAAAAACACCTTACATTCAAGGACTTTTTCTAATTTTGAGGTATTTTTTTGGGTTATCTTTTTAAACTTACAATTTTTATCACAGTTTCATCTATAAAAATGTGATCTGAATCATTTAAGATGTGAAAATTGTAATTTTAACCATGCATGATTCAGATTTCAATTGTTTTTATTTATCCCATATTTAAACTA
AGACATGCAATATACATACATTGCATAGTCCATGTAATACACAGAGATAATAGAAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTT
AAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAGTGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACG
AGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCCTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAG
ACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAGTTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAA
ATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAACCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGAT
TTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACT
GTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAG
AAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTTTTTGATTCTCTACTTGCAGTTCTCAGTT
TTCCTTTTTTGTGTTTTGATTTGGAAGTTCTAACAATTTTAGTTAAAAACACTAATGTGTAATTTTGTGGTTGTTTATCTTCTCAGCCGTTTTACCTTTATATCTTATTTTTGTGTATGTTTTTTTTTAAAGTTGGGAAAAGTTTACAATGGGC
>TRINITY_DN116064_c0_g1_i9 from sample A1 / Example unspliced isoform:GTACGAGAAGTGAGAGACGTGCTTGAACGGAGCAAAAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCG
ACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGgtacatttcttgatgcaattaaagtttttacagattgattactttggttcatgaatacggcttgctgcttttaaattttgtggaatctctctttcaaggttccagttttctctaaatttagcgctc
tggcaagttatcctggttgcatttccacgttctctctacttccagatgcattgaaacattcaagtactggagaagtaaattgtgttggaagggttataccttatggaaagttattcggttgacagATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAA
GCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATC
TTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAAT
TCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGA
TGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTT
CTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATC
TCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATGGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTT
CCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTG
AGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTATAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGAT
GCTAAGAGTGGATATCTCAGTTATTCCCG
Intron 6 GTGCGGGATT ... AATTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.52 | 32 | 18 | 10.1 |
| A2 | 21.55 | 45.4 | 16 | 9 |
| A3 | 15.72 | 31 | 8 | 3.6 |
| A4 | 45.01 | 13 | 15 | 6.3 |
| A5 | 35.57 | 5 | 5 | 0.6 |
| A6 | 9.81 | 7 | 0 | 1.6 |
| A7 | 5.76 | 41 | 1 | 4.6 |
| A8 | 16.23 | 28.1 | 9 | 1.9 |
| A9 | 10.77 | 26.4 | 4 | 2.4 |
| A10 | 15.19 | 26 | 2 | 7.6 |
>TRINITY_DN98908_c0_g1_i3 from sample A4 / Example spliced isoformATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGAT
GGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAGTTTCTTCTTTTTCTCTTTTGTTT
GTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAACCGTCAATTCTATCGACATGGTT
ACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAA
AATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGATGCATTGAAACATT
CAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTA
TGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAG
GAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGG
ATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGAC
AGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTG
AAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGGTATTTTTTCTATCATCTCTCATGTGCACATGGGAAAGAAAATAGAATTTGTACGTATGGGACTGGATTTATGAGCTCTAACTGTGAATTTAAGCTGATGCATTGTGGACAAATGGCAAAGGCACTTTTCCA
GTCAATCATTTTCATTTTCACATCTATTGTATTTCAAGTATAATATTTAGTGAGATTGATCA
>TRINITY_DN98908_c0_g1_i7 from sample A4 / Example unspliced isoform:CACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGAC
CTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGCGGGCGCCAATTTGTTTTGAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATG
GAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAG
TGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACT
CTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGgtgcgggatttcccatactcttctagtaatgattttatccattctgttttactctccatgaacaaaaaaaattcaatttgacttttttaaacaataggaagaactcgtgacctctcatgagaattgaag
aggctttaagtttattattaatatgaagccagcaataccctatgatgttttccaacttgtatgaattgtttttcaaatcttcctaattaacgatgttcaattgaaatttcacagCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGAT
GTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAG
ATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAA
GTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGGTATTTTTTCTATCATCTCTCATGTGCACATGGGAAAGAAAATAGAATTTGTACGTATGGGACTGGATTTATGAGCTCTAACTGTGAATTTAAGCTGATGCATTGTGGACAAATGGCAAAGGCACTTTTCCAGT
CAATCATTTTCATTTTCACATCTATTGTATTTCAAGTATAATATTTAGTGAGATTGATCA
Intron 7 GTGCGGGATT ... AATTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.89 | 32 | 1 | 13 |
| A2 | 23.53 | 45.5 | 3 | 14 |
| A3 | 13.89 | 31 | 2 | 5 |
| A4 | 35 | 13 | 7 | 7 |
| A5 | 28.57 | 5 | 0 | 2 |
| A6 | 30 | 7 | 0 | 3 |
| A7 | 28.07 | 41 | 0 | 16 |
| A8 | 12.33 | 28.5 | 2 | 4 |
| A9 | 18.46 | 26.5 | 3 | 6 |
| A10 | 35 | 26 | 0 | 14 |
>TRINITY_DN110699_c0_g1_i5 from sample A2 / Example spliced isoformAAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTTAAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAG
TGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCG
GCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTC
GTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCT
CGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGA
ATCTCTCTTTCAAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCTAGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGA
CGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAG
GGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGT
GAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATG
TTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATT
CATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGA
CTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATTGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGAC
ATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGA
GATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTA
TAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTCAGTTATTCCCGGAAAATATGTTCACACTCATCCATGTGTATGTGATGGATAATATCAGGTTACATGAAAGTGTTTACATCTTGAGAGGGCTGCATATCAAATTTGTGTTGACTGCCAATATGAGCTTGAAACAGAGATTC
AAAATATATGAAGAGGG
>TRINITY_DN110699_c0_g1_i11 from sample A2 / Example unspliced isoform:AAGGGAATGTTCTAAGgtgcgggatttcccatactcttctagtaatgattttatccattctgttttactctccatgaacaaaaaaaaattcaatttgacttttttaaacaataggaagaactcgtgacctctcatgagaattgaagaggctttaagtttattattaatatgaagccagcaataccctatgatgttttcca
acttgtatgaattgtttttcaaatcttcctaattaacgatgttcaattgaaatttcacagCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTAC
AGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCAT
CAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAA
CAGAGAAACAAG
Intron 8 GTAAGCTTTG ... ATATTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.1 | 7 | 8 | 17 |
| A2 | 88.24 | 1 | 8 | 7 |
| A3 | 55.56 | 8 | 7 | 13 |
| A4 | 70.73 | 6 | 17 | 12 |
| A5 | 53.85 | 3 | 5 | 2 |
| A6 | 100 | 0 | 2 | 0 |
| A7 | 100 | 0 | 0 | 3 |
| A8 | 100 | 0 | 9 | 1 |
| A9 | 55.56 | 2 | 1 | 4 |
| A10 | 33.33 | 3 | 0 | 3 |
>TRINITY_DN108859_c0_g1_i11 from sample A3 / Example spliced isoformCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAA
GGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAG
TTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAA
CCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAA
ACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTC
AGCACAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCCAGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCA
CTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTC
AACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGG
AATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAA
GCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGC
AAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAA
GATTGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGT
GTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATC
TCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTGC
>TRINITY_DN108859_c0_g1_i12 from sample A3 / Example unspliced isoform:CCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAA
GGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAG
TTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAA
CCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAA
ACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTC
AGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGAATCTCTCTTTCAAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCCAgtaagctttgttcatttaattac
tgcagcgggcgccaatttgttttgaataataatcctgaattcttgattgagcagaatagccattattttctggtatatgatttattggcatttgaagtccttcgcatttgtgtttttctttgttttttgacaatgtgctgaatgaccatatatttatagGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGT
TGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTCTACTCCTTCTCTGTGTTTTTCTATTCTGGAACCATCTTAGTTGAAGCCACTTGCGTTTTCAATAAACGCCGATCTAGTCAATCAAATCAGAATAAAAAATAGCAGCTC
TTGAAGTTTTCGCATGGATTTGAATGAATGCAGGAAATTCCTTCGCATTCTTATCCAGCCTAAACAAACAGTGAATGGGGCTTCTAAAATTCCTAATTGGAGATTTCAATTTGATAGGGCATTGTTTATTTCAGAAATCGTTGTAAAAGCAATAGGCTAACAATCTATGTTGTATTTAGTTAAATTCTCTATTGGCTCTG
CTTGACCAGGTGAGAAAGCCAC
Intron 9 GTACATTTCT ... CGGTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.95 | 13 | 13 | 16.8 |
| A2 | 61.32 | 12.7 | 16 | 19.5 |
| A3 | 75.77 | 3.3 | 8 | 12.3 |
| A4 | 64.81 | 5.3 | 6 | 13.5 |
| A5 | 62.72 | 3.3 | 2 | 8.8 |
| A6 | 33.72 | 3.7 | 1 | 1.8 |
| A7 | 61.02 | 4.3 | 3 | 8.7 |
| A8 | 55.24 | 4 | 5 | 4.3 |
| A9 | 54.87 | 10 | 2 | 18.3 |
| A10 | 43.08 | 7.3 | 4 | 6.8 |
>TRINITY_DN116064_c0_g1_i2 from sample A1 / Example spliced isoformGCCGGAGAGAAAATCAAATGCCATGTGTCCAGTAGCTTCCATCTGATTGAAGATTCCCGATGTCAAATCCCTTCGACATTCTGTGCGGGCGGAATATAAGCTGTCATATCAAGAACCCTAGAAAACAGAAGAAGATATGGAAGAAAAAAAAACACAATTGCGCCAAATTTGACATGAAAGTGCTAGAAATTTCGAGCAAG
GTCAGAGAGTTTTATTTTGATTTGAATTCTGTATACGGTGAGCCTAAAAGCCCTAATTTTTGTTTAATTCTGATGGTGAAACTAAAACCTAATTTTGTATTGTTCTGATATCTGTTTTCGTAATAAATTCCGACACCGCGGAAAAAAAATTACGGCTCCTTCGTGGCGGAGGAAGGGCCGTCCATCTCCATGGCATCCGG
CATCCTTATCTGCAGGGCGGCTCCATTAGAGAAAGCATAGAAAGGAAAAAAGCATGACACGCGTCTGCTGTTTATCCTGAGAAGGCATAGAGCCCACAGAACACAGATATTTATTCATAAATATCTTCCTTTCAGCCGGCCGGCAAATTAACATGAACACGAATCCCCGAAGCTGCTGCTGACATTGCCAGCCAATCGTG
CCAGGTTTTATGGAAATAGGATTCTTTTTCATCGTCATCCGGATAGATCTTCATTGGCTTCGGTTGTTTTAAAATTGATGACTATCATGGCTTGGCAACTTTTATATTTATTATAAGAATTAAATGCTACGCGGCGCTCGCCTTACACGAGCATTCGGAAATTTTAGTTTGGTCATTTGATGGAATCTGATGATGAAAAT
TTCTGAGTTTGACAAGGAATTTATATATTTTTAAATCTCATGATAAAAAGGATTCTTTTATTGTCAAAGAGTATAAAAAGTCACAACTTTTATCTTTTCGGTCCGACAGAAATAAAAGATAACCTTACAATTTTGTCAATTACAGACCGACACTGTAAAAATCTTGCGTGTAAATTCTTTATATGAAATGGTAAGAGCTA
AAGCGAGCTAAAAACACCTTACATTCAAGGACTTTTTCTAATTTTGAGGTATTTTTTTGGGTTATCTTTTTAAACTTACAATTTTTATCACAGTTTCATCTATAAAAATGTGATCTGAATCATTTAAGATGTGAAAATTGTAATTTTAACCATGCATGATTCAGATTTCAATTGTTTTTATTTATCCCATATTTAAACTA
AGACATGCAATATACATACATTGCATAGTCCATGTAATACACAGAGATAATAGAAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTT
AAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAGTGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACG
AGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCCTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAG
ACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAGTTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAA
ATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAACCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGAT
TTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACT
GTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAG
AAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTTTTTGATTCTCTACTTGCAGTTCTCAGTT
TTCCTTTTTTGTGTTTTGATTTGGAAGTTCTAACAATTTTAGTTAAAAACACTAATGTGTAATTTTGTGGTTGTTTATCTTCTCAGCCGTTTTACCTTTATATCTTATTTTTGTGTATGTTTTTTTTTAAAGTTGGGAAAAGTTTACAATGGGC
>TRINITY_DN116064_c0_g1_i7 from sample A1 / Example unspliced isoform:GTACGAGAAGTGAGAGACGTGCTTGAACGGAGCAAAAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCG
ACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGgtacatttcttgatgcaattaaagtttttacagattgattactttggttcatgaatacggcttgctgcttttaaattttgtggaatctctctttcaaggttccagttttctctaaatttagcgctc
tggcaagttatcctggttgcatttccacgttctctctacttctagtaagctttgttcatttaattactgcagcgggcgccaatttgttttgaataataatcctgaattcttgattgagcagaatagccattattttctggtatatgatttattggcatttgaagtccttcgcatttgtgtttttctttgttttttgacaa
tgtgctgaatgaccatatatttataggatgcattgaaacattcaagtactggagaagtaaattgtgttggaagggttataccttatggaaagttattcggttgacagATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGAC
CGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCAC
GTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTT
TATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAG
GCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAA
GAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAAT
TATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATGGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACAT
GTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGG
ACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTATAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTC
AGTTATTCCCG
Intron 10 GTACATTTCT ... ATATTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.72 | 14 | 13 | 17 |
| A2 | 65.71 | 6 | 16 | 7 |
| A3 | 48.84 | 11 | 8 | 13 |
| A4 | 42.86 | 12 | 6 | 12 |
| A5 | 25 | 6 | 2 | 2 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 36.94 | 5 | 2.9 | 3 |
| A8 | 60 | 2 | 5 | 1 |
| A9 | 27.27 | 8 | 2 | 4 |
| A10 | 36.84 | 6 | 4 | 3 |
>TRINITY_DN116064_c0_g1_i13 from sample A1 / Example spliced isoformGTACGAGAAGTGAGAGACGTGCTTGAACGGAGCAAAAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCG
ACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTC
GAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAG
GAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGT
TCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTA
TGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTT
CTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAA
CCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATGGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTC
AGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAG
ATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTATAAACTTCATAA
CTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTCAGTTATTCCCG
>TRINITY_DN116064_c0_g1_i7 from sample A1 / Example unspliced isoform:GTACGAGAAGTGAGAGACGTGCTTGAACGGAGCAAAAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCG
ACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGgtacatttcttgatgcaattaaagtttttacagattgattactttggttcatgaatacggcttgctgcttttaaattttgtggaatctctctttcaaggttccagttttctctaaatttagcgctc
tggcaagttatcctggttgcatttccacgttctctctacttctagtaagctttgttcatttaattactgcagcgggcgccaatttgttttgaataataatcctgaattcttgattgagcagaatagccattattttctggtatatgatttattggcatttgaagtccttcgcatttgtgtttttctttgttttttgacaa
tgtgctgaatgaccatatatttatagGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGAC
CGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCAC
GTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTT
TATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAG
GCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAA
GAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAAT
TATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATGGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACAT
GTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGG
ACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTATAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTC
AGTTATTCCCG
Intron 11 GTATATGATT ... ATATTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.69 | 5.7 | 9 | 17 |
| A2 | 83.33 | 1 | 3 | 7 |
| A3 | 55.15 | 7.3 | 5 | 13 |
| A4 | 50.77 | 12 | 12 | 12 |
| A5 | 50 | 2 | 2 | 2 |
| A6 | 100 | 0 | 1 | 0 |
| A7 | 100 | 0 | 2 | 3 |
| A8 | 63.63 | 2 | 4 | 1 |
| A9 | 33.33 | 5 | 1 | 4 |
| A10 | 66.14 | 1.3 | 2 | 3 |
>TRINITY_DN108859_c0_g1_i6 from sample A3 / Example spliced isoformCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAA
GGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGGTTAGATTGTCTTCAGTCACGACGGTTACTCGAAGAAATCAG
TTTCTTCTTTTTCTCTTTTGTTTGTGAATTTGTTTTCGATTTTTTGAACTCGGATTGATAAATTCCATTCCTGCAAAGCTTTAGACCTCGCAAATTGCAAATATGATTATGTATAACAGTGGAAATTATAGTTTCCTCTGATCTCTCTTCTTATTTTATATTGTTGACCTTGTTTTATCAATCTTTCATGGATACTCTAA
CCGTCAATTCTATCGACATGGTTACAGATATTTATGGAAATCTGCAACTGAATGCTGAGATTTTTATTTTCTAATCCAACTCCTCCTAATTTGAATTTGTTGTTTCCCTGTTTACAATTTTTTGCTCCGTTCAAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAA
ACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTC
AGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGAATCTCTCTTTCAAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCTAGTAAGCTTTGTTCATTTAATTAC
TGCAGCGGGCGCCAATTTGTTTTGAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGA
AGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGA
ACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTC
TAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAAT
TAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAG
AAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATTGCA
TCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAA
AAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATG
CATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTGC
>TRINITY_DN108859_c0_g1_i10 from sample A3 / Example unspliced isoform:CCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCGGCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAA
GGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTCGTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGC
GTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATG
AACTCATTGTCTATCATCATTTCAGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGAATCTCTCTTTCAAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCCA
GTAAGCTTTGTTCATTTAATTACTGCAGCGGGCGCCAATTTGTTTTGAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGgtatatgatttattggcatttgaagtccttcgcatttgtgtttttctttgttttttgacaatgtgctgaatgaccatatatttatagGATGCATTGAAACATTCA
AGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTCTACTCCTTCTCTGTGTTTTTCTATTCTGGAACCATCTTAGTTGAAGCCACTTGCGTTTTCAATAAACGCCGATCTAGTCAATCAA
ATCAGAATAAAAAATAGCAGCTCTTGAAGTTTTCGCATGGATTTGAATGAATGCAGGAAATTCCTTCGCATTCTTATCCAGCCTAAACAAACAGTGAATGGGGCTTCTAAAATTCCTAATTGGAGATTTCAATTTGATAGGGCATTGTTTATTTCAGAAATCGTTGTAAAAGCAATAGGCTAACAATCTATGTTGTATTT
AGTTAAATTCTCTATTGGCTCTGCTTGACCAGGTGAGAAAGCCAC
Intron 12 GTCTACTCCT ... GCTTGACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.49 | 30 | 6 | 5 |
| A2 | 26.44 | 32 | 7 | 16 |
| A3 | 34.29 | 23 | 15 | 9 |
| A4 | 47.62 | 11 | 12 | 8 |
| A5 | 48.15 | 7 | 8 | 5 |
| A6 | 11.11 | 12 | 1 | 2 |
| A7 | 18.45 | 42 | 0 | 19 |
| A8 | 17.65 | 14 | 0 | 6 |
| A9 | 12.77 | 41 | 1 | 11 |
| A10 | 15.62 | 27 | 1 | 9 |
>TRINITY_DN110699_c0_g1_i5 from sample A2 / Example spliced isoformAAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTTAAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAG
TGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCG
GCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTC
GTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCT
CGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGA
ATCTCTCTTTCAAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCTAGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGA
CGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAG
GGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGT
GAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATG
TTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATT
CATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGA
CTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATTGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGAC
ATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGA
GATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTA
TAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTCAGTTATTCCCGGAAAATATGTTCACACTCATCCATGTGTATGTGATGGATAATATCAGGTTACATGAAAGTGTTTACATCTTGAGAGGGCTGCATATCAAATTTGTGTTGACTGCCAATATGAGCTTGAAACAGAGATTC
AAAATATATGAAGAGGG
>TRINITY_DN110699_c0_g1_i13 from sample A2 / Example unspliced isoform:AAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTTAAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAG
TGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCG
GCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTC
GTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCT
CGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGA
ATCTCTCTTTCAAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCCAGTAAGCTTTGTTCATTTAATTACTGCAGCGGGCGCCAATTTGTTTTGAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGGTATATGATTTATTGGCAT
TTGAAGTCCTTCGCATTTGTGTTTTTCTTTGTTTTTTGACAATGTGCTGAATGACCATATATTTATAGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGgt
ctactccttctctgtgtttttctattctggaaccatcttagttgaagccacttgcgttttcaataaacgccgatctagtcaatcaaatcagaataaaaaatagcagctcttgaagttttcgcatggatttgaatgaatgcaggaaattccttcgcattcttatccagcctaaacaatcagtgaatggggcttctaaaatt
cctaattggagatttcaatttgatagagcattgtttatttcagaaatcgttgtaaaagcaataggctaacaatctatgttgtatttagttaaattctctattggctctgcttgaccagGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAAC
TGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTTTTTGATTCTCTACTTGCAGTTCTCAGTTTTCCTTTTTTGTGTTTTGATTTGGAAGTTCTAACAATTTTAGTTAAAAACACTAATGTGTAATTTTGTGGTTGTTTA
Intron 13 GTTAGATTGT ... TCCGTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84 | 4 | 24 | 18 |
| A2 | 54.1 | 14 | 25 | 8 |
| A3 | 48.15 | 21 | 27 | 12 |
| A4 | 44.09 | 26 | 15 | 26 |
| A5 | 44 | 7 | 11 | 0 |
| A6 | 20 | 2 | 1 | 0 |
| A7 | 77.78 | 2 | 10 | 4 |
| A8 | 100 | 0 | 4 | 4 |
| A9 | 32 | 17 | 13 | 3 |
| A10 | 56.52 | 5 | 9 | 4 |
>TRINITY_DN110699_c0_g1_i5 from sample A2 / Example spliced isoformAAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTTAAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAG
TGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCG
GCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTC
GTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCT
CGCTCTGTACGTGGTGACGTGATCGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGA
ATCTCTCTTTCAAGGTTCCAGTTTTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCTAGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGA
CGAGCCACTTTCGAAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCACATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAG
GGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGGTGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGT
GAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGCTTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATG
TTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTAAACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATT
CATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGACAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGA
CTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGATAGAAGGCTGCAGTCTTAAGATTGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGAC
ATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGATCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGA
GATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGGTTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTA
TAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTCAGTTATTCCCGGAAAATATGTTCACACTCATCCATGTGTATGTGATGGATAATATCAGGTTACATGAAAGTGTTTACATCTTGAGAGGGCTGCATATCAAATTTGTGTTGACTGCCAATATGAGCTTGAAACAGAGATTC
AAAATATATGAAGAGGG
>TRINITY_DN110699_c0_g1_i8 from sample A2 / Example unspliced isoform:AAAATGGGGTTTCGATTGTACAAACATAATCTTACAATTTCAATGACTTTTAACAAGTAATTTCTACACATGTTGTATCAGCGGAATGGTGGAATTCCATGAAACCTACTCGGAAAAGAAAAGAAACGTAAGGGTTTATCCAACTTTAAGACTTTTGTCGATTTACCGACCGCTGGTTTCCGTCTACCTAATGCCGTCAG
TGATGAGGGCAGCGTGGTTTGACAACTGCCGGTACCGGGATCCCTTGCTGCCTACGGTTACGCATATTCTCATATTCCTGTTAAATCCGACGGTCAGTATTTGCGATTGATCGAATCCTACGAAGAGTAATGGAATACATGCGCACGAGTTACTCCAGCGACCGGACGTCTTTGTGCACCTGCCAGCTTGCTGCCTCTCG
GCTCTCGATTCTTTTCTCCCGTTCATTTATCTTTTTCCTCACGAACTTATTTTTCAGAGCTTTACCGTGCAGAGATTCTCGTTAAAGGTCACACATATCAGTTTAGGATGGAATTTCTGCATCTGCGTCGGTGTAGGGCTCGAAGAGACGATTCCAACGGTATCAAAATTAAACGGTTCTGAATGTTATCGCGCCGTTTC
GTCTATATTTTCGTGCCTTTGCATTTTGCCGTTATAGTTCTCAGgttagattgtcttcagtcacgacggttactcgaagaaatcagtttcttctttttctcttttgtttgtgaatttgttttcgattttttgaactcggattgataaattccattcctgcaaagctttagacctcgcaaattgcaaatatgattatgtat
aacagtggaaattatagtttcctctgatctctcttcttattttatattgttgaccttgttttatcaatctttcatggatactctaaccgtcaattctatcgacatggttacagatatttatggaaatctgcaactgaatgctgagatttttattttctaatccaactcctcctaatttgaatttgttgtttccctgttta
caattttttgctccgttcaagCACGTCTCTCACTTCTCGTACGTTGGCTTGTGTCAAAATTGCGTTGGATCATACACCGAGGACAAACCGTCTGAGGAAATTGAGAGAAAATCCAAAACATAGGATAAAGCTGATCAAGATTTAACTGTTTCAGCCGTTCGAACCTTCTCTCTTTCTCGCTCTGTACGTGGTGACGTGAT
CGAAACGTAGGAGCAAGCGACCTAGTCTCAGGACACATGTAATCAAATGCGAAAGTCGTTATGAACTCATTGTCTATCATCATTTCAGCACAGGTACATTTCTTGATGCAATTAAAGTTTTTACAGATTGATTACTTTGGTTCATGAATACGGCTTGCTGCTTTTAAATTTTGTGGAATCTCTCTTTCAAGGTTCCAGTT
TTCTCTAAATTTAGCGCTCTGGCAAGTTATCCTGGTTGCATTTCCACGTTCTCTCTACTTCCAGTAAGCTTTGTTCATTTAATTACTGCAGCGGGCGCCAATTTGTTTTGAATAATAATCCTGAATTCTTGATTGAGCAGAATAGCCATTATTTTCTGGTATATGATTTATTGGCATTTGAAGTCCTTCGCATTTGTGTT
TTTCTTTGTTTTTTGACAATGTGCTGAATGACCATATATTTATAGGATGCATTGAAACATTCAAGTACTGGAGAAGTAAATTGTGTTGGAAGGGTTATACCTTATGGAAAGTTATTCGGTTGACAGATTAGAGGAGGGAGAAACTCACTTTTCAATAGACGAGCCACTTTCGAAGGTCTACTCCTTCTCTGTGTTTTTCT
ATTCTGGAACCATCTTAGTTGAAGCCACTTGCGTTTTCAATAAACGCCGATCTAGTCAATCAAATCAGAATAAAAAATAGCAGCTCTTGAAGTTTTCGCATGGATTTGAATGAATGCAGGAAATTCCTTCGCATTCTTATCCAGCCTAAACAATCAGTGAATGGGGCTTCTAAAATTCCTAATTGGAGATTTCAATTTGA
TAGAGCATTGTTTATTTCAGAAATCGTTGTAAAAGCAATAGGCTAACAATCTATGTTGTATTTAGTTAAATTCTCTATTGGCTCTGCTTGACCAGGTGAGAAAGCCATACACGATTACAAAGCAAAGAGAAAGGTGGACCGAAGACGAACATAAAAAGTTCTTGGATGCCTTGAAACTGTATGGACGGTCGTGGCGCCAC
ATTGAAGAACACATTGGTACGAAAAGTGCTGTTCAGATTCGCAGCCATGCCCAGAAATTTTTCACAAAGGTGGAGAAAGGGGCTTCAACAGGAACTAATTCAACCATGACTGATCAATATCTTGAGATACCACCTCCACGTCCAAAGCGAAAGCCAGGACATCCTTACCCCAAAAAGACAGGAGTTATAGGCAGAGGAGG
TGACCTATCAATTGCAGAAGAGGACTCTCGAACCAGGGGCTGTGAAGTCTCGGATATATCTGCAGTAACGCTTGACGGTGAAAGGGAATGTTCTAAGCTTACAGAACTTGCACAGCATAATTCAAAAAGCAGGCCATTTTATAAGCCCGAAATGACACAGGGAACACTGCAGCCAAGTCGGATGTCTACAAGCTTGAAGC
TTTTTGGTCGAACTCTTGTTGTTCAAAACTCATTTACAGATGATTTCTTATTTACTTCCATGAAAAATGAAGCAATATGTTCTGAGATTTATGCTGAAAATAAAGATGCTCCATGTGAAGATGAAATTTTGGATTGCAGGCGAATTAGAAAAGACACATTTTCACCTGAAGAAAGTGAGACAGATACTATTCAGTCAGTA
AACAATAGCACTGGAAGAAGCACAATTAATAAATCATCAGTGTTCAGTAATACAAACTGGAGTTCTGCACTACTCAATTCATGCCACTCTTCTTCATCGGAAGATGAGAAAATTCAATCTTCTTACCCACAAATGTTAAGAGATGGAGGTACTCTTGAAGATGGTCTACAGCAAAAACTTGAAGTGCCTGAAATAAAGGA
CAAGTATACTCACCAAAGCAAGGAAGAAGAAGAAAAACAGAGAAACAAGTCGTTGATGCAATTACAGAATAAAATTGGACTTCAAGCTCAACCTTGGACCCTTAATGCAGGAAAATTTATCTCCAATGTATCACATAATTATAAGATGCCACATCCTGGGAATATTGTATTACAAAGTAACACGAGTCCTGCCCCGTTGA
TAGAAGGCTGCAGTCTTAAGATTGCATCTGCAAGCCAGAGCAACTATGGCGATCCCTTTAAGGAAGAATGTAGTATGACATTTCCTCACTCAGAAACTAGTTTGGATAGTATCTCAGACTTCCAAATACTTCATGACATGTCTTCAATAGGTTTTTGTAGGCATATTCAATTAGAAAAAGATGTTTTTCCTTTTTCCAGA
TCTCAAGGCTCAATGTTGTGTTCAAAAAGTAGAGGAGAAAACAGAACATACAGCGGGGAAGGCTTTGTACCATATAAGAGATGTCAAATAGATGGGCAGTCTCCAAGAGAATCAGATACTGAGGAGTGTAATGTGTAGGACTCTGCGGAATCCAAAGCATGAAAATATCACAGCCGAATGTAAAAAAATAAAAGCTGAGG
TTGATTCCTGCATGTAATCTCTCATGCATGAGCTTTAAATTTTATTTATTCTCTGTAGGAGGTCTTTGCAATGTTTCTATAAACTTCATAACTTATCTTCAATTACTTTCAACACAATGATGCTAAGAGTGGATATCTCAGTTATTCCCGGAAAATATGTTCACACTCATCCATGTGTATGTGATGGATAATATCAGGTT
ACATGAAAGTGTTTACATCTTGAGAGGGCTGCATATCAAATTTGTGTTGACTGCCAATATGAGCTTGAAACAGAGATTCAAAATATATGAAGAGGG