NA ----> NA
Intron 1 GTAAGAGTGA ... TGGCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 5 | 2.5 | 0 |
| A2 | 21.25 | 3.8 | 1 | 1.5 |
| A3 | 28.89 | 8 | 4 | 0 |
| A4 | 100 | 0 | 2 | 0 |
| A5 | 16.66 | 4 | 1 | 0 |
| A6 | 20.64 | 36.3 | 13 | 0 |
| A7 | 35.77 | 35.8 | 21.5 | 2 |
| A8 | 22.04 | 41.8 | 13 | 3 |
| A9 | 26.24 | 33 | 15.5 | 0 |
| A10 | 41.01 | 29.8 | 21 | 2 |
>TRINITY_DN44853_c0_g3_i3 from sample A7 / Example spliced isoformTTTGGTTTCAACTACTTCTTCTATTTACCGGGCTTCTTGTTTCCAGTTTTTCCATTCATCGCCTACGATGGCTGTTACGTTACATTTGGCTTTTTGTATAACAGACTAACTGTTCTTGCTGTTTCCGCTACATTTGTCTTTTTCTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAGAAGCCGGT
AATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATACATGCAGC
GAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGGATCCTACTATCCCATCCAATGCATCCAACATTATGGTT
GACAGAAGATTCAATAATAGATTTATGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTACGTTATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAG
ATATTATGTTAAACTAATAAGTTAAAATTTGTTGTGTATAGAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAA
CAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAGCCTTGAAACCTGACATCTTGTGAAATTTGGTAGAATCTAATGAAAGAG
>TRINITY_DN44853_c0_g3_i2 from sample A7 / Example unspliced isoform:TTTGGTTTCAACTACTTCTTCTATTTACCGGGCTTCTTGTTTCCAGTTTTTCCATTCATCGCCTACGATGGCTGTTACGTTACATTTGGCTTTTTGTATAACAGACTAACTGTTCTTGCTGTTTCCGCTACATTTGTCTTTTTCTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAGAAGCCGGT
AATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATACATGCAGC
GAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGgtaagagtgaaaattttattttggggtttaattatctta
tgtttcaacttatttttcttattaacaatattatcttaatatatatgttttcaccacatacaaaattactagagtaaccctagtgattggatcttgttggcatgcagGATCCTACTATCC
Intron 2 GTGGGTTTAA ... GTTCATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 2 | 1 | 3 |
| A2 | 50 | 1 | 1 | 1 |
| A3 | 50 | 1 | 0 | 1 |
| A4 | 50 | 3 | 1 | 3 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 10 | 2.5 | 5 |
| A7 | 48.15 | 14 | 4 | 13 |
| A8 | 53.33 | 21 | 5 | 24 |
| A9 | 50 | 10 | 0.5 | 10 |
| A10 | 33.33 | 4 | 1.5 | 2 |
>TRINITY_DN44193_c0_g2_i4 from sample A8 / Example spliced isoformGTTTCTATTTTGGTTTCAACAACTTCTTCTATTTACCGGGCTTCTTGTTTCCAGTTTTTCCATTCATCGCCTACGATGGCTGTTACGTTACATTTGGCTTTTTGTATAACAGACTAACTGTTCTTGCTGTTTCCGCTACATTTGTCTTTTTCTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAG
AAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATA
CATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGGATCCTACTATCCCATCCAATGCATCCAACA
TTATGGTTGACAGAAGATTCAATAATAGATTTATGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTT
TGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATA
GTATTGGGTTTTATAACTATACAATATTCTTGTTTAG
>TRINITY_DN44193_c0_g2_i10 from sample A8 / Example unspliced isoform:CATTTTGTTCTAAATTTGTAAGAATGTTCACAAGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGGTAAGAGTGAAAATTTTATTTTGGGGTTTAATTATCTTATGTTTCAACTTATTTTTCTTATTAACAA
TATTATCTTAATATATATGTTTTCACCACATACAAAATTACTAGAGTAACCCTAGTGATTGGATCTTGTTGGCATGCAGGATCCTACTATCCCATCCAATGCATCCAACATTATGGTTGACAGAAGATTCAATAATAGATTTATgtgggtttaattatgttattttcccttattatattgttttaatatctatgtttatt
ccttgtaggatgtttctagaattaataactccaagaagaatacaatctatcaacaagaatagtcatgtcatatatctggtgctcaagctgataacatgcattctatgaccaacatggattcctctagtatcccaattgaattgagcatgtcgacaaccattaagagtacaccacaattaagaaataatttatcaaatgtg
ggctcaatcggaattgttccaccaacgccagaacaagtttccttgaggagtctcatagaatcacaagaaagaatattaagggtcctacgtaccaaatactcttgaaaatgatcagattatgaaagaattacttcaacaaatttagctatatgggagacaaaattgttggaaagtgaagggcttagctcaaatgaactagt
aaaaatatctaaagatatattctacaattttggtttttctttagcattctaaatttcaatttttgcatcttcaattttttagtacataccattttatcaaattctcaagcttgattgcatctctaaatgcttctaattcttaggtgcttagttcatttttttagtttcatatctggtgtgtagggaaattatttcaaact
caataattctttaatatttggttggcttcataacattttcacattcaaattgtaaatgtaggaaataaatggaaaagtgattaatgtacatataggggaatttgcttcacccctaaaactgcaatgatttcctcgatgactacaaagggattgaaagaagttgcaatcatgctaacatcagaaggaaatgtcttgaagga
tgaaatgggctaaaattattccattttatcttttattgtgcaaagcaattgtttggtaatacaatcgagtttgattggaggaaacaacttaatgttaagaaaggtgaactcttcaatgatgtcataacaacctttggaaatattagcttcaataaggaaattattttgaatatttctcaaaaagacattcactttgaaag
ggacaacttaaggtccaagctaacaaaatacttgagatttccatgcccatattgaatcatagatcaagcaacatgggatgaacttataaatgatgccaagtttaagaggagtcctataagaatccaaactacattccatccacatgagaaggaagtcaaagatgcctttgtgatacaacaaaagcaactaaccccaaggt
gtcaagtattggatctcataattaggatataatgggtacaataacatttgtggtaacttggtgagtgaatttttttcatttactttatcctctatttgaaaagatcttgaaaaattatgaataagttgtatttatgagtcattatagaatatgaatttgattccttttgttcatgtagGTTCATCAATTTCAGAAAGAAG
CTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTACGTTATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAGATATTATGTTAAACTAATAAGTTAAAATTTGTTGTGTATAGAAGGCCC
AAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTA
TAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAG
Intron 3 GTACTTTGAG ... GGTGCATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.64 | 15 | 19 | 15 |
| A2 | 51.65 | 8 | 12 | 5.8 |
| A3 | 57.64 | 10 | 21.6 | 9 |
| A4 | 39.34 | 7 | 5.2 | 4 |
| A5 | 63.2 | 3 | 6.4 | 4 |
| A6 | 58.6 | 49 | 86 | 58 |
| A7 | 61.45 | 43 | 71.8 | 69 |
| A8 | 60.3 | 51 | 80.4 | 77.2 |
| A9 | 64.25 | 42 | 85.2 | 69.4 |
| A10 | 71.88 | 17 | 46.4 | 41.8 |
>TRINITY_DN86067_c0_g1_i2 from sample A1 / Example spliced isoformTCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAGAAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATT
CTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATACATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTA
GAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTACGTTATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAGATATTATGTTAAACTAATAAGTTAAAATTTGTTGTGTATAGAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGC
>TRINITY_DN86067_c0_g1_i1 from sample A1 / Example unspliced isoform:TCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAGAAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATT
CTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATACATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGgtactttgagttctactatggggatccacaactcttcaacaatttaattgagatgttgagaatgatcgaaggtaacaaattaccatg
atggtgcatgagGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTACGTTATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAGATATTATGTTAAAC
TAATAAGTTAAAATTTGTTGTGTATAGAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGC
Intron 4 GTACGTTATT ... TGTATAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 9 | 4 |
| A2 | 100 | 0 | 2 | 3 |
| A3 | 60 | 1 | 3 | 0 |
| A4 | 81.82 | 1 | 7 | 2 |
| A5 | 25 | 3 | 0 | 2 |
| A6 | 76.47 | 6 | 28 | 11 |
| A7 | 63.64 | 12 | 29 | 13 |
| A8 | 71.11 | 13 | 38 | 26 |
| A9 | 69.7 | 15 | 39 | 30 |
| A10 | 52.38 | 10 | 11 | 11 |
>TRINITY_DN44193_c0_g2_i4 from sample A8 / Example spliced isoformGTTTCTATTTTGGTTTCAACAACTTCTTCTATTTACCGGGCTTCTTGTTTCCAGTTTTTCCATTCATCGCCTACGATGGCTGTTACGTTACATTTGGCTTTTTGTATAACAGACTAACTGTTCTTGCTGTTTCCGCTACATTTGTCTTTTTCTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAG
AAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATA
CATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGGATCCTACTATCCCATCCAATGCATCCAACA
TTATGGTTGACAGAAGATTCAATAATAGATTTATGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTT
TGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATA
GTATTGGGTTTTATAACTATACAATATTCTTGTTTAG
>TRINITY_DN44193_c0_g2_i2 from sample A8 / Example unspliced isoform:GTTTCTATTTTGGTTTCAACAACTTCTTCTATTTACCGGGCTTCTTGTTTCCAGTTTTTCCATTCATCGCCTACGATGGCTGTTACGTTACATTTGGCTTTTTGTATAACAGACTAACTGTTCTTGCTGTTTCCGCTACATTTGTCTTTTTCTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAG
AAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATA
CATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGGATCCTACTATCCCATCCAATGCATCCAACA
TTATGGTTGACAGAAGATTCAATAATAGATTTATGTGGGTTTAATTATGTTATTTTCCCTTATTATATTGTTTTAATATCTATGTTTATTCCTTGTAGGATGTTTCTAGAATTAATAACTCCAAGAAGAATACAATCTATCAACAAGAATAGTCATGTCATATATCTGGTGCTCAAGCTGATAACATGCATTCTATGACC
AACATGGATTCCTCTAGTATCCCAATTGAATTGAGCATGTCGACAACCATTAAGAGTACACCACAATTAAGAAATAATTTATCAAATGTGGGCTCAATCGGAATTGTTCCACCAACGCCAGAACAAGTTTCCTTGAGGAGTCTCATAGAATCACAAGAAAGAATATTAAGGGTCCTACGTACCAAATACTCTTGAAAATG
ATCAGATTATGAAAGAATTACTTCAACAAATTTAGCTATATGGGAGACAAAATTGTTGGAAAGTGAAGGGCTTAGCTCAAATGAACTAGTAAAAATATCTAAAGATATATTCTACAATTTTGGTTTTTCTTTAGCATTCTAAATTTCAATTTTTGCATCTTCAATTTTTTAGTACATACCATTTTATCAAATTCTCAAGC
TTGATTGCATCTCTAAATGCTTCTAATTCTTAGGTGCTTAGTTCATTTTTTTAGTTTCATATCTGGTGTGTAGGGAAATTATTTCAAACTCAATAATTCTTTAATATTTGGTTGGCTTCATAACATTTTCACATTCAAATTGTAAATGTAGGAAATAAATGGAAAAGTGATTAATGTACATATAGGGGAATTTGCTTCAC
CCCTAAAACTGCAATGATTTCCTCGATGACTACAAAGGGATTGAAAGAAGTTGCAATCATGCTAACATCAGAAGGAAATGTCTTGAAGGATGAAATGGGCTAAAATTATTCCATTTTATCTTTTATTGTGCAAAGCAATTGTTTGGTAATACAATCGAGTTTGATTGGAGGAAACAACTTAATGTTAAGAAAGGTGAACT
CTTCAATGATGTCATAACAACCTTTGGAAATATTAGCTTCAATAAGGAAATTATTTTGAATATTTCTCAAAAAGACATTCACTTTGAAAGGGACAACTTAAGGTCCAAGCTAACAAAATACTTGAGATTTCCATGCCCATATTGAATCATAGATCAAGCAACATGGGATGAACTTATAAATGATGCCAAGTTTAAGAGGA
GTCCTATAAGAATCCAAACTACATTCCATCCACATGAGAAGGAAGTCAAAGATGCCTTTGTGATACAACAAAAGCAACTAACCCCAAGGTGTCAAGTATTGGATCTCATAATTAGGATATAATGGGTACAATAACATTTGTGGTAACTTGGTGAGTGAATTTTTTTCATTTACTTTATCCTCTATTTGAAAAGATCTTGA
AAAATTATGAATAAGTTGTATTTATGAGTCATTATAGAATATGAATTTGATTCCTTTTGTTCATGTAGGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATgtacgt
tattcaaaatatttgatgacttgtgcgataatttgattgaagatattatgttaaactaataagttaaaatttgttgtgtatagaagGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACAT
CCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAG
Intron 5 GTAAGAGTGA ... GTTCATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.09 | 15 | 0 | 3 |
| A2 | 15.48 | 5.5 | 1 | 1 |
| A3 | 11.69 | 8 | 1 | 1 |
| A4 | 38.46 | 4 | 2 | 3 |
| A5 | 0 | 3 | 0 | 0 |
| A6 | 4.53 | 53.5 | 0 | 5 |
| A7 | 16.23 | 65 | 12 | 13 |
| A8 | 15.93 | 76.5 | 5 | 24 |
| A9 | 8.24 | 67 | 2 | 10 |
| A10 | 19.49 | 39.5 | 17 | 2 |
>TRINITY_DN44193_c0_g2_i9 from sample A8 / Example spliced isoformCATTTTGTTCTAAATTTGTAAGAATGTTCACAAGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAG
GCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTACGTTATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAGATATTATGTTAAACTAATAAGTTAAAATTTGTTGTGTATAGAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACA
CAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGT
TTTATAACTATACAATATTCTTGTTTAG
>TRINITY_DN44193_c0_g2_i10 from sample A8 / Example unspliced isoform:CATTTTGTTCTAAATTTGTAAGAATGTTCACAAGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGgtaagagtgaaaattttattttggggtttaattatcttatgtttcaacttatttttcttattaacaa
tattatcttaatatatatgttttcaccacatacaaaattactagagtaaccctagtgattggatcttgttggcatgcaggatcctactatcccatccaatgcatccaacattatggttgacagaagattcaataatagatttatgtgggtttaattatgttattttcccttattatattgttttaatatctatgtttatt
ccttgtaggatgtttctagaattaataactccaagaagaatacaatctatcaacaagaatagtcatgtcatatatctggtgctcaagctgataacatgcattctatgaccaacatggattcctctagtatcccaattgaattgagcatgtcgacaaccattaagagtacaccacaattaagaaataatttatcaaatgtg
ggctcaatcggaattgttccaccaacgccagaacaagtttccttgaggagtctcatagaatcacaagaaagaatattaagggtcctacgtaccaaatactcttgaaaatgatcagattatgaaagaattacttcaacaaatttagctatatgggagacaaaattgttggaaagtgaagggcttagctcaaatgaactagt
aaaaatatctaaagatatattctacaattttggtttttctttagcattctaaatttcaatttttgcatcttcaattttttagtacataccattttatcaaattctcaagcttgattgcatctctaaatgcttctaattcttaggtgcttagttcatttttttagtttcatatctggtgtgtagggaaattatttcaaact
caataattctttaatatttggttggcttcataacattttcacattcaaattgtaaatgtaggaaataaatggaaaagtgattaatgtacatataggggaatttgcttcacccctaaaactgcaatgatttcctcgatgactacaaagggattgaaagaagttgcaatcatgctaacatcagaaggaaatgtcttgaagga
tgaaatgggctaaaattattccattttatcttttattgtgcaaagcaattgtttggtaatacaatcgagtttgattggaggaaacaacttaatgttaagaaaggtgaactcttcaatgatgtcataacaacctttggaaatattagcttcaataaggaaattattttgaatatttctcaaaaagacattcactttgaaag
ggacaacttaaggtccaagctaacaaaatacttgagatttccatgcccatattgaatcatagatcaagcaacatgggatgaacttataaatgatgccaagtttaagaggagtcctataagaatccaaactacattccatccacatgagaaggaagtcaaagatgcctttgtgatacaacaaaagcaactaaccccaaggt
gtcaagtattggatctcataattaggatataatgggtacaataacatttgtggtaacttggtgagtgaatttttttcatttactttatcctctatttgaaaagatcttgaaaaattatgaataagttgtatttatgagtcattatagaatatgaatttgattccttttgttcatgtagGTTCATCAATTTCAGAAAGAAG
CTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTACGTTATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAGATATTATGTTAAACTAATAAGTTAAAATTTGTTGTGTATAGAAGGCCC
AAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTA
TAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAG
Intron 6 GTACTTTGAG ... GTTCATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.14 | 15 | 20 | 3 |
| A2 | 60 | 8 | 12 | 1 |
| A3 | 71.43 | 10 | 25 | 1 |
| A4 | 36.36 | 7 | 4 | 3 |
| A5 | 70 | 3 | 7 | 0 |
| A6 | 65.25 | 49 | 92 | 5 |
| A7 | 64.17 | 43 | 77 | 13 |
| A8 | 61.65 | 51 | 82 | 24 |
| A9 | 66.67 | 42 | 84 | 10 |
| A10 | 74.24 | 17 | 49 | 2 |
>TRINITY_DN44193_c0_g2_i7 from sample A8 / Example spliced isoformGTTTCTATTTTGGTTTCAACAACTTCTTCTATTTACCGGGCTTCTTGTTTCCAGTTTTTCCATTCATCGCCTACGATGGCTGTTACGTTACATTTGGCTTTTTGTATAACAGACTAACTGTTCTTGCTGTTTCCGCTACATTTGTCTTTTTCTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAG
AAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATA
CATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTAC
GTTATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAGATATTATGTTAAACTAATAAGTTAAAATTTGTTGTGTATAGAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCAC
ATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAG
>TRINITY_DN44193_c0_g2_i2 from sample A8 / Example unspliced isoform:GTTTCTATTTTGGTTTCAACAACTTCTTCTATTTACCGGGCTTCTTGTTTCCAGTTTTTCCATTCATCGCCTACGATGGCTGTTACGTTACATTTGGCTTTTTGTATAACAGACTAACTGTTCTTGCTGTTTCCGCTACATTTGTCTTTTTCTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAG
AAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAATTTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATA
CATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGgtactttgagttctactatggggatccacaactcttcaacaatttaattgagatgttgagaatgatcgaaggtaacaaattaccatgatggtgcatgaggatcctactatcccatccaatgcatccaaca
ttatggttgacagaagattcaataatagatttatgtgggtttaattatgttattttcccttattatattgttttaatatctatgtttattccttgtaggatgtttctagaattaataactccaagaagaatacaatctatcaacaagaatagtcatgtcatatatctggtgctcaagctgataacatgcattctatgacc
aacatggattcctctagtatcccaattgaattgagcatgtcgacaaccattaagagtacaccacaattaagaaataatttatcaaatgtgggctcaatcggaattgttccaccaacgccagaacaagtttccttgaggagtctcatagaatcacaagaaagaatattaagggtcctacgtaccaaatactcttgaaaatg
atcagattatgaaagaattacttcaacaaatttagctatatgggagacaaaattgttggaaagtgaagggcttagctcaaatgaactagtaaaaatatctaaagatatattctacaattttggtttttctttagcattctaaatttcaatttttgcatcttcaattttttagtacataccattttatcaaattctcaagc
ttgattgcatctctaaatgcttctaattcttaggtgcttagttcatttttttagtttcatatctggtgtgtagggaaattatttcaaactcaataattctttaatatttggttggcttcataacattttcacattcaaattgtaaatgtaggaaataaatggaaaagtgattaatgtacatataggggaatttgcttcac
ccctaaaactgcaatgatttcctcgatgactacaaagggattgaaagaagttgcaatcatgctaacatcagaaggaaatgtcttgaaggatgaaatgggctaaaattattccattttatcttttattgtgcaaagcaattgtttggtaatacaatcgagtttgattggaggaaacaacttaatgttaagaaaggtgaact
cttcaatgatgtcataacaacctttggaaatattagcttcaataaggaaattattttgaatatttctcaaaaagacattcactttgaaagggacaacttaaggtccaagctaacaaaatacttgagatttccatgcccatattgaatcatagatcaagcaacatgggatgaacttataaatgatgccaagtttaagagga
gtcctataagaatccaaactacattccatccacatgagaaggaagtcaaagatgcctttgtgatacaacaaaagcaactaaccccaaggtgtcaagtattggatctcataattaggatataatgggtacaataacatttgtggtaacttggtgagtgaatttttttcatttactttatcctctatttgaaaagatcttga
aaaattatgaataagttgtatttatgagtcattatagaatatgaatttgattccttttgttcatgtagGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGGTATACATTTAATGTACGT
TATTCAAAATATTTGATGACTTGTGCGATAATTTGATTGAAGATATTATGTTAAACTAATAAGTTAAAATTTGTTGTGTATAGAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACAT
CCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATATATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAG
Intron 7 GTATACATTT ... TTGTGTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.47 | 2 | 9 | 4 |
| A2 | 60 | 1 | 0 | 3 |
| A3 | 100 | 0 | 3 | 0 |
| A4 | 71.28 | 2 | 8 | 2 |
| A5 | 25 | 3 | 0 | 2 |
| A6 | 79.59 | 5 | 28 | 11 |
| A7 | 63.88 | 13 | 34 | 12 |
| A8 | 65.13 | 17 | 36.5 | 27 |
| A9 | 62.49 | 21 | 42 | 28 |
| A10 | 52.38 | 10 | 11 | 11 |
>TRINITY_DN36505_c1_g1_i5 from sample A6 / Example spliced isoformGAGAAATGGAATGTTCACAAGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATTACCATGATGGTGCATGAGGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACA
TATGCTAGAGCAAGGGGAGAAATTGATCTCTGGAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATA
TATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAGCCTTGAAACCTGACATCTTGTGAAATTTGGTAGAATCTAATGAAAGAGGC
>TRINITY_DN36505_c1_g1_i3 from sample A6 / Example unspliced isoform:CTATGATCCAAAACCAATGCTGTAGGTGCTGTCTGTGACGGTGGATGAGAAGCCGGTAATGAAGGTGGCTGTGGAGGAGAAGCCGGCGGTGATTTTATGATCAGAATTGGTTTGTTCTGTTTTGTCCAACTTCGTGCGGAGACTTAGTCTACCCATGAAGCCAAAATGCTTCTCTGAGAGCTAGACCTCCATCATCTAAT
TTAATTCTCTTCCGTATATATATTAAAATGGTTTCTGGCTTATGTTATACATGCAGCGAGGCTAAATATACTTGGAAAAAGGGCCAGAAGAAGAAGAGGAGGTCGTGGTAGAGAAATGGGTACTTTGAGTTCTACTATGGGGATCCACAACTCTTCAACAATTTAATTGAGATGTTGAGAATGATCGAAGGTAACAAATT
ACCATGATGGTGCATGAGGTTCATCAATTTCAGAAAGAAGCTCCAAAGGAGGGTTGCACATATGCTTTATTACATGGTTCTCGAGGCCTCTAACAACATATGCTAGAGCAAGGGGAGAAATTGATCTCTGGgtatacatttaatgtacgttattcaaaatatttgatgacttgtgcgataatttgattgaagatattatg
ttaaactaataagttaaaatttgttgtgtatagAAGGCCCAAGAACCAAACTCATAGGGGAAGGATATGAATTCTTTGTTGCACACAATGAATCAATTGCCATTCTTGAAACTCAACAAAGGAAAGAAAATGATAATGAGCATGCCACATCCATAATTATCTAGTAATTCCTTGTAGAAAGAGGATTGACAACAATAATA
TATAAGAATTTTCTATGCAAGATATATTTCAATCCTTTTATAACTTTTCCCTTCCAAATTTTTCATATTTTTTATAGTATTGGGTTTTATAACTATACAATATTCTTGTTTAGCCTTGAAACCTGACATCTTGTGAAATTTGGTAGAATCTAATGAAAGAGGC