sp|F4IFC5|SYTM2_ARATH ----> Threonine--tRNA ligase, chloroplastic/mitochondrial 2


Intron 1 GTAACTTTAC ... CGAATGACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A111.621752310
A29.721301412
A313.691452314
A48.09125112
A513.245993
A617.07170355
A78.75292287
A88.65243234
A910.972763413
A1012.17267374



>TRINITY_DN110477_c0_g4_i6 from sample A2 / Example spliced isoform
TCTTACTGCTATTTCAGAATGCTTATTGTTTGTATGCGTTTTATTAATAATTATTACTAGAGAACCATTTATGTTTAATCTGTTTTTGACATCACTTCTGATGTGTGTGAGCAGTGAACGCAAATGTGAAGATAAAGCAATTGGCAAGCAATTGGCTGCTGCATTGCTAGATATAAAGATCATGAAACAGAACTGGAGCA
CGGTTCTTTTGTGTCTACATGAAGCTGGGAAATATGCGAAAATTCGTCTTGCAGACCTTTTTTGTGAGGCACTTTCCCCATTATCTCCATTGAATTCAAAAACTGTATGCCAAGAGATGCCAAGTGGAAGAGCTCGTGGAACTGACACATTAGGGAATGCTGATCTTCACAACAGCAGCTATTCAGACTTGACAAATGGG
AAGTTCATTGGCCATGCTATCAAAAAACTAAGGGATCTGTCATTGCCATTATTAGCGAGTCTCCTTAAGGAGTGGGAGAAGCTGACGAAAGGAATGACAGAGATCAATATTGAAGTTTACAGATTACAGTCAATAGTTGGACGTGATTTCAATGGAGACAATGCTGAAGAAATTTCTCGAGATTTCAGTGGAGACTTTAC
TGGCATGCCGCAAACTTCAAAAATCAGTGCAGAGAAACTGTTGCCAAAGACCAGCTCCTATGGTTGTTCAACTTCAGAAAGAGGGGATTTGAAAGCTGTAAATGACATGGCTGTGAAGCTGCTTGAGCGAATGGTTAGACAGTATTTGAGACCAATAGAATCCATGCCCTTCCATGAAATAATATGCTACAAACAAGTTA
ATGCATTGCAGTCGGCCCTTATGGGAGACACTCGGAAAACAGTTCAAAATGATCTCATAAATTTCCAATCATCTCTCCAGTGTGGTTGCTGCAGAGGATTAGTTGGATTATCTTCATCCATGCATGACACTTCTCTCGCATATAATTTGGCTCAAGAACATGGTGATGTTATCAATGTCCATGATTGGTACGAGTCATTT
GGAGCCATAGTTTCTGGGACAGATCTAAACAAGGAGCATGTGGAAAATAAATCTTCTGAGAAAAAGCGAAAGGCTATGGCTGGGCCCCGGCAAACAGATAAAGCTTCCATTCAGGCTAGATTTTCGAAAGCAATCACAGAGCTTCAAATTGTGGGTCTACTGAGAATGCCCAGCAAGAGACGTCCTGATTACATACAACG
AGTTGCCTTTGGTTTGTAGAAGGAAAACCTTCTGTTGTTACCTCTGAATGAACTTACCACTATTAGGTGCTAACATTCGAGACTATTTGTAATTAGCTGGTAGCAGGAGTGTAAACCAGTGTTAGCTGATGACTAAACTGAAATACAACAGGGAAAAACAATGATCAGGATGACATCACAGAGACAGCTGATGAAGTTGG
TTATACTGGTTTACAGGTTGATAGAATTCTTCTAGTGCCAAATATCCTTATAAAGTGAGAATACAAGGGTGGTGAATTTGTGATTTCAGTGGTTATGCATGGACAGTTTACAATGTAAAAGGAGTTGTATATCTTATCTATTTTCCAGGATGCATGTAAATTTGAATGTGTAAGCAATCTATGCTTGCCTTCTGCTATTT
CCTTTTAAGAGATTTTGGTTCTTCACCAATCAGTGAGGAAATTGATGGACAGTTGTGTTAGAAATTGCATCTTCGGCAAGTGAGAAAATGTATTTGTTCCACGGGCATATCTTTTGATTTTTGCTCAATATACAAGCATTTTTTCATATAAAAGTGTTATTGATTCCTATAAAATAGTGACTGATCACTCAATTCAATAT
GTATTTGCAAGACTACTTTTTCCACAAAATATATTACATATAAGTGTGTTAAACCCAG


>TRINITY_DN110477_c0_g4_i5 from sample A2 / Example unspliced isoform:
TCTTACTGCTATTTCAGAATGCTTATTGTTTGTATGCGTTTTATTAATAATTATTACTAGAGAACCATTTATGTTTAATCTGTTTTTGACATCACTTCTGATGTGTGTGAGCAGTGAACGCAAATGTGAAGATAAAGCAATTGGCAAGCAATTGGCTGCTGCATTGCTAGATATAAAGATCATGAAACAGAACTGGAGCA
CGGTTCTTTTGTGTCTACATGAAGCTGGGAAATATGCGAAAATTCGTCTTGCAGACCTTTTTTGTGAGGCACTTTCCCCATTATCTCCATTGAATTCAAAAACTGTATGCCAAGAGATGCCAAGTGGAAGAGCTCGTGGAACTGACACATTAGGGAATGCTGATCTTCACAACAGCAGCTATTCAGACTTGACAAATGGG
AAGTTCATTGGCCATGCTATCAAAAAACTAAGGGATCTGTCATTGCCATTATTAGCGAGTCTCCTTAAGGAGTGGGAGAAGCTGACGAAAGGAATGACAGAGATCAATATTGAAGTTTACAGATTACAGTCAATAGTTGGACGTGATTTCAATGGAGACAATGCTGAAGgtaactttactggtattgggggcaactgtga
gttaatgagcagacacccatataatatagagagagatcttgatagtgtttctgatcgaatgacag
AAATTTCTCGAGATTTCAGTGGAGACTTTACTGGCATGCCGCAAACTTCAAAAATCAGTGCAGAGAAACTGTTGCCAAAGTAAGATTTTAGATTTCCTCAACCATGGTTGTAATTAAGGCAGTAATTTTGCATAC
ATCACAGAAGTAACATTTGGAATATTAGAACCTTTAACATGATAGAACCTTCCAGATTAATCTATCAAATGCTTCTTAGCTGCCAGGATATTTATCTTTTCACTGATTTTGAAAGAGAATT




Intron 2 GTAAGTATCA ... TCATTTGTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A135.2123916
A237.5542
A327.661758
A433.33505
A55.26901
A616.671551
A722.222139
A816.671533
A94.172302
A10101822



>TRINITY_DN119443_c4_g1_i6 from sample A1 / Example spliced isoform
CATTGTCTGAAAGGGTGGGTGCATATTCTGTGAAATCACTGGTGGATGGATACGATGGGACTCAGGTGGCTAAGTTCATCCACGTGGCACTTACATTATGGATACTTCACACCCTCACACGAACCACACAATTTGCCAATTTCTCATGAATGTTATGCATTCTTAGCCAACCCGATTATCTGTTCGATCAGAAGATTGAT
AACAATGCAGAACAGAATATACACACAGAGCCTCTGCAGTATATACTCTTAAATAATATTCCCGCGTACCATAATCATCCCTCTCCCCGCCAAATGCAGGTTTTCACCGCAATCTAATTTAATCAATAATGGATTTTACAACGACTTCAGTTCACAGGGGCCATAGAATGGCCGCGGTCACATCCATTCTATGTCATCCG
GCATTGGTTCGGAGTTCGAAATCCACGAGGAAAATGCTTTTGAATGCAAAATCGCCAGCGTGGGCAGGATCCCACTACCACAGCAGAGTCGTTCTGGAAAACCCATACCAGTCTAGGGTTTTGGGCGGTGACCGTATAAGGCTTAAAAGGGTCGCAGCTTTTGCCTCGCTGGCGGCTCCTCAGGAAGCTGCGCCTAAAAT
TCAAGAGGACGATGAGTTTAAGCCGGTTGTTCTGCCTACTAACGAGACCTCTAAGACGCTTCTTTGCATTCGCCACACGAGTGCTCATGTTCTGGCCATGGCAGTGCAAAAGGTTTTTCCAGATGCTAAGGTCACAATAGGTCCGTGGATTGAAAGGGGCTTTTACTATGATTTTGATATTCAGCCTTTAACAGACAAAG
ATCTCAAGAAAATAAAGAAAGAAATGGATCGTATTATACGTCGAAACTTACCTCTTATAAGGGAGGAGGTTTCTAGGGAGGAAGCTGAACAACGAATAAGGGCTATTAATGAACCTTACAAATTGGAGATTCTAGATAGTATCAAATCGGAACCCATCACTATATATCGTATTGGAGATGAATGGTGGGACCTTTGTGCG
GGACCACATGTTGAAAGCACTGGCCAACTTAACAAGAAAGCCATCGAGCTTGAATCTGTGGCTGGGGCTTATTGGAGAGGTGATGAAAAGAGACAGATGCTACAACGAATATATGGCACTGCCTGGGAAAATGAAGAACAACTGAAAACATATCAGTTCCTTAAAGAGGAGGCAAAACGACGTGATCACAGGCGTTTAGG
CCAGGAGCTAGACTTGTTTTCTATACAGGAGGAGGCAGGAGGGGGCTTGGTATTTTGGCATCCTAAAGGAGCTATTGTTAGGCAAAATATTGAAGATTTTTGGAAAAGAACTCATATACAGCATGGATATGACCTTCTTTACACACCGCATGTGGCCAAAGCTGACCTCTGGAAGATTAGTGGACATCTAGAGTTTTACA
AAGAAAACATGTTTAATCAAATGGACATTGAAGATGAGCCGTATCAACTTAGACCCATGAACTGCCCCTATCATATACTAGTCTACAAGCATAGCCTGCGCTCATACAGGGACTTACCCTTCAAAGTTGCAGAATTGGGTACTGTATATAGATATGAGATGTCGGGAAGCTTACATGGTCTTTTCCGTGTAAGGGGTTTC
ACTCAGGATGATGCACATATCTTCTGTTTGCCTAGCCAGATCAAGGAAGAAATAAGAAGTGTTTTAGATCTGACAGAAGCGATCTTGTCTCAGTTTGATTTTAAGAATTATGAAATTAATCTATCAACAAAACCTGAAAAGGCAGTGGGTAGTGATGTTATTTGGGAGAAAGCAACTTCTGCTTTAAGAGATGCTCTTGA
AGACAAGGGGTGGGATTATTCTGTTGATGAAGGAGGTGGTGCATTTTATGGTCCAAAGATTGATCTTAAGATTGAAGATGCTCTAGGAAGAAAGTGGCAGTGTTCGACAGTTCAGGTGGATTTCAATCTGCCTCAGCGATTTGATCTATTTTATATTGATTCAAACTCAGAGAAGAAACGGCCCATCATGATTCACAGGG
CCATCCTAGGATCTCTTGAAAGGTTCTTTGGGATATTGATTGAGCATTATGCTGGTGACTTTCCTTTGTGGCTTTCTCCAGTACAAGCACGCATTTTACCTGTAACAGACACTCAGGTCCCATACTGTCAAAAGGTAGTGGCAAAGATGAAAGAGAAAAATATTAGAGCGGAATTATCATTTGGTGAGCGTCTTAGCAAA
CTAATTAGGAATTCAGAAACACAGAAGATACCTTTGATGGCAGTTGTGGGGCCAAAAGAGGTTGAAAGTGGAACTCTCACTGTTCGCACGAGACATGGGGGAGAACTTGGGACCATGACGATGGATGACGTTATAGAAAAAATTCAAAAGGCAGCAGCTAATAGAAGCTTTTTATAGCATAATAAAATTCTCCTTTTAGA
TGTTAATACCCCAGCTTCGCAGTACAATTTGCATGCAAGAAATGCTTGTATATGGTGGAAGGTTATGTCCGTTTTACCTTTTGTGCAGATCCATTGTCATCGTTTCTCTACACACGCTGCTTAAATAGGCAATGAACTCAAAACTGCAGTCTCCCATGTAAATAACGTCATAAAGTCACCATATTAGATCAGTATGTGCT
ACTGCTGATTTTATGATGGTTTCAGTTATTGTCTCTAGTATGTCAATTTCCTTTAGTTTATTCTTTTTTGGTTGACAAATGTGCTTGTGCCAAACACGAAGGCCAGAAGGATTTACCATATTAATGTTAGTACATTCTAGCCAGAATTACATTGCATGGAAAGTTGTGCAGAGTCTTCTTCAATGTTGTGGATAACTTGA
CATATAGATCCTTATTTCCCTTTTTTAGGAT


>TRINITY_DN119443_c4_g1_i1 from sample A1 / Example unspliced isoform:
CATTGTCTGAAAGGGTGGGTGCATATTCTGTGAAATCACTGGTGGATGGATACGATGGGACTCAGGTGGCTAAGTTCATCCACGTGGCACTTACATTATGGATACTTCACACCCTCACACGAACCACACAATTTGCCAATTTCTCATGAATGTTATGCATTCTTAGCCAACCCGATTATCTGTTCGATCAGAAGATTGAT
AACAATGCAGAACAGAATATACACACAGAGCCTCTGCAGTATATACTCTTAAATAATATTCCCGCGTACCATAATCATCCCTCTCCCCGCCAAATGCAGGTTTTCACCGCAATCTAATTTAATCAATAATGGATTTTACAACGACTTCAGTTCACAGGGGCCATAGAATGGCCGCGGTCACATCCATTCTATGTCATCCG
GCATTGGTTCGGAGTTCGAAATCCACGAGGAAAATGCTTTTGAATGCAAAATCGCCAGCGTGGGCAGGATCCCACTACCACAGCAGAGTCGTTCTGGAAAACCCATACCAGTCTAGGGTTTTGGGCGGTGACCGTATAAGGCTTAAAAGGGTCGCAGCTTTTGCCTCGCTGGCGGCTCCTCAGGAAGCTGCGCCTAAAAT
TCAAGAGGACGATGAGTTTAAGCCGGTTGTTCTGCCTACTAACGAGACCTCTAAGACGCTTCTTTGCATTCGCCACACGAGTGCTCATGTTCTGGCCATGGCAGTGCAAAAGGTTTTTCCAGATGCTAAGGTCACAATAGGTCCGTGGATTGAAAGGGGCTTTTACTATGATTTTGATATTCAGCCTTTAACAGACAAAG
ATCTCAAGAAAATAAAGAAAGAAATGgtaagtatcatgtttatgtgttgagtttatttctgtagtctttctgagaacattcataattttgctgaaagggcagaatgaagcttgcaaacattaagatttgacattgatttggcatcatttgtagGATCGTATTATACGTCGAAACTTACCTCTTATAAGGGAAGAGGTCTC
TAGGGAGGAAGCTGAACAACGAATAAGGGCTATTAATGAACCTTACAAATTGGAGATTCTAGATAGTATCAAATCGGAACCCATCACTATATATCGTATTGGTAATGGCAACCATCATAACAGCTCTATTTTTTTCTAAATTATTTTGCAAATGGGAGTTGCACAATATTTTTTTAATTTTCAATTCATTTTCCCCATTT
TTGTATGCTTTGTTTAACAGTTGCAATGCATTCTGAGCC




Intron 3 GTAACTTTCA ... CATTGTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A114.812304
A201100
A314.291202
A425903
A50300
A610.342603
A74.172301
A80900
A925913
A1012.122904



>TRINITY_DN43111_c0_g1_i2 from sample A9 / Example spliced isoform
ATACGATGGGACTCAGGTGGCTAAGTTCATCCACGTGGCACTTACATTATGGATACTTCACACCCTCACACGAACCACACAATTTGCCAATTTCTCATGAATGTTATGCATTCTTAGCCAACCCGATTATCTGTTCGATCAGAAGATTGATAACAATGCAGAACAGAATATACACACAGAGCCTCTGCAGTATATACTCT
TAAATAATATTCCCGCGTACCATAATCATCCCTCTCCCCGCCAAATGCAGGTTTTCACCGCAATCTAATTTAATCAATAATGGATTTTACAACGACTTCAGTTCACAGGGTCCATAGAATGGCCGCGGTCACATCCATTCTATGCCATCCGGCATTGGTTCGGAGTTCGAAATCCACGAGGAAAATGCTTTTGAATGCAA
AATCGCCAGCGTGGGCAGGATCCCACTACCACAGCAGAGTCGTTCTGGAAAACCCATACCAGTCTAGGGTTTTGGGCGGTGACCGTATAAGGCTTAAAAGGGTCGCAGCTTTTGCCTCGCTGGCGGCTCCTCAGGAAGCTGCTCCTAAAATTCAAGAGGACGATGAGTTTAAGCCGGTTGTTCTGCCTACTAACGAGACC
TCTAAGACGCTTCTTTGCATTCGCCACACGAGTGCTCATGTTCTGGCCATGGCAGTGCAAAAGGTTTTTCCAGATGCTAAGGTCACAATAGGTCCGTGGATTGAAAGGGGCTTTTACTATGATTTTGATATTCAGCCTTTAACAGACAAAGATCTCAAGAAAATAAAGAAAGAAATGGATCGTATTATACGTCGAAACTT
ACCTCTTATAAGGGAGGAGGTTTCTAGGGAGGAAGCTGAACAACGAATAAGGGCTATTAATGAACCTTACAAATTGGAGATTCTAGATAGTATCAAATCGGAACCCATCACTATATATCGTATTGGAGATGAATGGTGGGACCTTTGTGCGGGACCACATGTTGAAAGCACTGGCCAACTTAACAAGAAAGCCATCGAAC
TTGAATCTGTGGCTGGGGCTTATTGGAGAGGTGATGAAAAGAGACAGATGCTACAACGAATATATGGCACTGCCTGGGAAAATGAAGAACAACTGAAAACATATCAGTTCCTTAAAGAGGAGGCAAAACGACGTGATCACAGGCGTTTAGGCCAGGAGCTAGACTTGTTTTCTATACAGGTATTAGATGGACATATTATG
GTGCTTGTTGGTTTATCCTGATCCAAATTCAGTATAGTGCATATAGACATGGGACTCATCTGGTGGAGCATGAC


>TRINITY_DN43111_c0_g1_i6 from sample A9 / Example unspliced isoform:
TTCGGAGTTCGAAATCCACGAGgtaactttcaaacattgatttggcccctaccctattgaaaaaacttaaaacgagatattgaagaatagactccattgttcagGAAAATGCTTTTGAATGCAAAATCGCCAGCGTGGGCAGGATCCCACTACCACAGCAGAGTCGTTCTGGAAAACCCATACCAGTCTAGGGTTTTGGG
CGGTGACCGTATAAGGCTTAAAAGGGTCGCAGCTTTTGCCTCGCTGGCGGCTCCTCAGGAAGCTGCTCCTAAAATTCAAGAGGACGATGAGTTTAAGCCGGTTGTTCTGCCTACTAACGAGACCTCTAAGACGCTTCTTTGCATTCGCCACACGAGTGCTCATGTTCTGGCCATGGCAGTGCAAAAGGTTTTTCCAGATG
CTAAGGTCACAATAGGTCCGTGGATTGAAAGGGGCTTTTACTATGATTTTGATATTCAGCCTTTAACAGACAAAGATCTCAAGAAAATAAAGAAAGAAATGGATCGTATTATACGTCGAAACTTACCTCTTATAAGGGAGGAGGTTTCTAGGGAGGAAGCTGAACAACGAATAAGGGCTATTAATGAACCTTACAAATTG
GAGATTCTAGATAGTATCAAATCGGAACCCATCACTATATATCGTATTGGAGATGAATGGTGGGACCTTTGTGCGGGACCACATGTTGAAAGCACTGGCCAACTTAACAAGAAAGCCATCGAACTTGAATCTGTGGCTGGGGCTTATTGGAGAGGTGATGAAAAGAGACAGATGCTACAACGAATATATGGCACTGCCTG
GGAAAATGAAGAACAACTGAAAACATATCAGTTCCTTAAAGAGGAGGCAAAACGACGTGATCACAGGCGTTTAGGCCAGGAGCTAGACTTGTTTTCTATACAGGAGGAGGCAGGAGGGGGCTTGGTATTTTGGCATCCTAAAGGAGCTATTGTTAGGCAAAATATTGAAGATTTTTGGAAAAGAACTCATATACAGCATG
GATATGACCTTCTTTACACACCGCATGTGGCCAAAGCTGACCTCTGGAAGATTAGTGGACATCTAGAGTTTTACAAAGAAAACATGTTTAATCAAATGGACATTGAAGATGAGCCGTATCAACTTAGACCCATGAACTGCCCCTATCATATACTAGTCTACAAGCATAGCCTGCGCTCATACAGGGACTTACCCTTCAAA
GTTGCAGAATTGGGTACTGTATATAGATATGAGATGTCGGGAAGCTTACATGGTCTTTTCCGTGTAAGGGGTTTCACTCAGGATGATGCACATATCTTCTGTTTGCCTAGCCAGATCAAGGAAGAAATAAGAAGTGTTTTAGATCTGACAGAAGCGATCTTGTCTCAGTTTGATTTTAAGAATTATGAAATTAATCTATC
AACAAAACCTGAAAAGGCAGTGGGTAGTGATGTTATTTGGGAGAAAGCAACTTCTGCTTTAAGAGATGCTCTTGAAGACAAGGGGTGGGATTATTCTGTTGATGAAGGAGGTGGTGCATTTTATGGTCCAAAGATTGATCTTAAGATTGAAGATGCTCTAGGAAGAAAGTGGCAGTGTTCGACAGTTCAGGTGGATTTCA
ATCTGCCTCAGCGATTTGATCTATTTTATATTGATTCAAACTCAGAGAAGAAACGGCCCATCATGATTCACAGGGCCATCCTAGGATCTCTTGAAAGGTTCTTTGGGATATTGATTGAGCATTATGCTGGTGACTTTCCTTTGTGGCTTTCTCCAGTACAAGCACGCATTTTACCTGTAACAGACACTCAGGTCCCATAC
TGTCAAAAGGTAGTGGCAAAGATGAAAGAGAAAAATATTAGAGCGGAATTATCATTTGGTGAGCGTCTTAGCAAACTAATTAGGAATTCAGAAACACAGAAGATACCTTTGATGGCAGTTGTGGGGCCAAAAGAGGTTGAAAGTGGAACTCTCACTGTTCGCACGAGACATGGGGGAGAACTTGGGACCATGACGATGGA
TGACGTTATAGAAAAAATTCAAAAGGCAGCAGCTAATAGAAGCTTTTTATAGCATAATAAAATTCTGCTTTTAGATGTTAATACCCCAGCTTCGCAGTACAATTTGCATGCAAGAAATGCTTGTATATCGTGGAAGGTTATGTCCGTTTTACCTTTTGTGCAGATCCATTGTCATCGTTTCTCTACACACGCTGCTTAAA
TAGGCAATGAACCCAAAACTGCAGTCTCCCATGTAAATAACGTCATAAAGTCACCATATTAGATCAGTATGTGCTACTGCTGATTTTATGATGGTTTCAGTTATTGTCTCTAGTATGTCAATTTCCTTTAGTTTATTCTTTTTTGGTTGACAAATGTGCTTGTGCCAAACACGAAGGCCAGAAGGATTTACCATATTAAT
GTTAGTACATTCTAGCCAGAATTACATTGCATGGAAAGTTGTGCAGAGTCTTCTTCAATGTTGTGGATAACTTGACATATAGATCCTTATTTCCCTTTTTTAGGATAGAGGATGCTGCATTTTACTGTATAGTGCTGTTCATGGAGAGGTA