sp|Q9SAJ3|FTSHC_ARATH ----> ATP-dependent zinc metalloprotease FTSH 12, chloroplastic
Intron 1 GTAATCCTGC ... GGAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.34 | 21 | 47 | 48 |
| A2 | 62.5 | 18 | 35 | 25 |
| A3 | 63.27 | 18 | 28 | 34 |
| A4 | 55.04 | 29 | 36 | 35 |
| A5 | 49.15 | 15 | 15 | 14 |
| A6 | 65.82 | 27 | 47 | 57 |
| A7 | 59.58 | 67 | 97.5 | 100 |
| A8 | 62.51 | 71 | 115.8 | 121 |
| A9 | 59.26 | 61 | 105.5 | 72 |
| A10 | 62.62 | 40 | 70 | 64 |
>TRINITY_DN121265_c0_g1_i3 from sample A2 / Example spliced isoformCCCTGTACCAGGTGGCCCACTTATCAAGATACCCCGAGGAATTTTCACCCTTTTCTTGTAATATTGCAAAGGATTCTTCATATAGATCGTTATCTCATCAAGAAGATCCCATACATCCCCTCCCAAAATAACATCACCATATCCTGATGCTGCTGCACCTTCAGGATATGGTGATGTTATTTTGGGAGGGGATGTATGGG
ATCTTCTTGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGT
GGATCGCAGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGCTTTGGCAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGC
AGTAATTCTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAACTCCATGTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACT
CAGGCGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTA
CATGAAGCTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGGCAAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCTGAACA
ACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCAGTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGG
AGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTA
ATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTG
AGATCCACTACCATAAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAA
GCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGG
CTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAATAATACCTCTTGTTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATG
TTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGAC
>TRINITY_DN121265_c0_g1_i5 from sample A2 / Example unspliced isoform:AAAGATATTAATTATTACAATTAAGATACCACAAATACGTCCCATCCCGTGTCTTCTAAAACCCCTTCTAAACCCTCAGTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGG
CATTCAGAGTCCACAGCGGAGCGGACCGCCTGCCATCAAACCTCCAAAACAACAACACATTCGCTCAAATTCCACTTGGCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGG
GAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATGGTAATGGGAAGGAAAATGGGAAGGAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAG
AATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAATGTGGAGAAGCTAAGGTTTCAGCTTTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGAT
TCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGCAGAAGGCTACTTGGAGGCATTTATTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCT
AAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAGAATTGGAAAGGGTCATTGATGAAGATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGA
GGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAATATGTAATTACTTTTGATTGGCAACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTC
AGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGAAATTTATGTGACAATGAAAGAGGGTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCA
GTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTTATACTATGCGCATAGTGAATACGAGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCT
TGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGC
AGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGCTTTGGCAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATT
CTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAACTCCATGTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGC
AGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAG
CTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGGCAAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCTGAACAACTTATA
TTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCAGTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGC
TCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGT
CGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCA
CTACCATAAGgtaatcctgctggaaaatctttcatatactatgaattgcttggaggtgcatcttggcttcatttgcctacaatagaagggttagacagagcttgcgtggaaagtaaatcaattatttttgtggaaatgcagTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGC
ATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGG
AGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATC
TATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAATAATACCTCTTGTTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTAC
AGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGAC
Intron 2 GTTGAGATAA ... CTACCATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.99 | 19 | 46 | 47 |
| A2 | 84.95 | 7 | 44 | 35 |
| A3 | 69.77 | 13 | 32 | 28 |
| A4 | 67.86 | 18 | 40 | 36 |
| A5 | 86.21 | 2 | 10 | 15 |
| A6 | 75.19 | 16 | 50 | 47 |
| A7 | 71.7 | 44 | 125 | 98 |
| A8 | 74.77 | 42 | 133 | 116 |
| A9 | 79.17 | 30 | 122 | 106 |
| A10 | 78.29 | 19 | 67 | 70 |
>TRINITY_DN113261_c0_g1_i1 from sample A3 / Example spliced isoformCCATTCATGAAAATTTGGTCATTAGTTGGTCTGCAGTGAACTCATATGGTAGTATTGAACTTCAGTTTTTATGGTAAGAATCATTGCTCATTTCTAAAGAATTCATCATTTACTGTTTGCAATTGAACACAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTA
CTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCTGAACAACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCAGTTAGCA
ACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAA
ATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTAATCCT
GCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATGTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTAAATATCTC
TATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCAT
TGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATCTATAAAGTTATTGGTATG
TTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAA
CTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCG
>TRINITY_DN113261_c0_g1_i3 from sample A3 / Example unspliced isoform:ATTATTACAATTAAGATACCACAAATACGTCCCATCCCGTGTCTTCTAAAACCCCTTCTAAACCCTCAGTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGGCATTCAGAGT
CCACAGCGGAGCGGACCGCATGCCATCAAACCTCCAAAACAACAACACATTCGCTCAAATTCCACTTGGCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGGGAAAACATTT
TAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATGGTAATGGGAAGGAAAATGGGAAGGAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAGAATTGCAGAT
TCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAATGTGGAGAAGCTAAGGTTTCAGCTTTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGATTCTTTCTAGC
TTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGCAGAAGGCTACTTGGAGGCATTTATTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCTAAAGATTATG
TTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAGAATTGGAAAGGGTCATTGATGAAGATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGAGGACATTCTA
GAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAATATGTAATTACTTTTGATTGGCAACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTCAGAAAATTGA
ATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGAAATTTATGTGACAATGAAAGAGGGTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCAGTTGCTGTTT
TAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTTATACTATGCGCATAGTGAATACGAGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATGGTGATGTTATTTTGGGAGGGGATGTATGGGATCTTCTTGATGAGATA
ACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGCAGAAGATTTT
TGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGCTTTGGCAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATTCTGATTTGTG
CAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAACTCCATGTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGCAGATATCCGA
AATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAGCTGGTCATAT
ACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGGCAAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCTGAACAACTTATATTTGGTGATG
ATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCAGTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCT
ATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAAT
GCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAgttgagataaatttctgattttgaatactgcattggcaaaacatctgttccatttgagatccactaccataag
GTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATGTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTA
AATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTG
GCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATCTATAAAGTTA
TTGGTATGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAG
AGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCG
Intron 3 ATGGAAGTGG ... CCTTGGCAAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.08 | 26 | 117 | 92 |
| A2 | 72.46 | 19 | 52 | 48 |
| A3 | 82.95 | 15 | 76 | 70 |
| A4 | 73.79 | 19 | 51 | 56 |
| A5 | 86.67 | 4 | 28 | 24 |
| A6 | 73.08 | 28 | 71 | 81 |
| A7 | 75.44 | 56 | 181 | 163 |
| A8 | 77.34 | 58 | 212 | 184 |
| A9 | 72.38 | 50 | 132 | 130 |
| A10 | 73.7 | 43 | 140 | 101 |
>TRINITY_DN42768_c0_g1_i3 from sample A6 / Example spliced isoformGTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGGCATTCAGAGTCCACAGCGGAGCGGACCGCCTGCCATCAAACCTCCAAAACAACAACACATTCGCTCAAATTCCACTTG
GCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGGGAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATGGTAATGGGAAGGAAAATGGGAAG
GAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAGAATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAATGTGGAGAAGCTAAGGTTTCAGCT
TTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGATTCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGCAGAAGGCTACTTGGAGGCATTTA
TTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCTAAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAGAATTGGAAAGGGTCATTGATGAA
GATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGAGGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAATATGTAATTACTTTTGATTGGCA
ACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTCAGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGAAATTTATGTGACAATGAAAGAGG
GTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCAGTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTTATACTATGCGCATAGTGAATACG
AGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCTTGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATCTTGAT
AAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGCAGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGCTTTGG
CAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATTCTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAACTCCAT
GTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAAGATAT
CATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAGCTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGGCAAGG
AATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCAGAACAACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGT
CCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCATTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAA
GAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAA
TACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATCTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTG
TGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCA
GCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAA
TTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTC
ATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTTTGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCAG
ATTGTGGTTACAGA
>TRINITY_DN42768_c0_g1_i2 from sample A6 / Example unspliced isoform:GTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGGCATTCAGAGTCCACAGCGGAGCGGACCGCCTGCCATCAAACCTCCAAAACAACAACACATTCGCTCAAATTCCACTTG
GCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGGGAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATGGTAATGGGAAGGAAAATGGGAAG
GAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAGAATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAATGTGGAGAAGCTAAGGTTTCAGCT
TTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGATTCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGCAGAAGGCTACTTGGAGGCATTTA
TTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCTAAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAGAATTGGAAAGGGTCATTGATGAA
GATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGAGGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAATATGTAATTACTTTTGATTGGCA
ACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTCAGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGAAATTTATGTGACAATGAAAGAGG
GTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCAGTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTTATACTATGCGCATAGTGAATACG
AGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCTTGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATCTTGAT
AAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGCAGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGCTTTGG
CAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATTCTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAACTCCAT
GTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAAGATAT
CATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAGCTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGGCAAGG
AATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCAGAACAACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGT
CCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCATTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAA
GAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCatggaagtggaagaaatagtgaaatcaatgaaccctgtaatgatgtcggacctaatgcagacaccaaatatcaaccttggcaacATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATG
AGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATCTTGGCTTCATTTGCCT
ACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGT
TTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGC
AGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTT
ATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTTTGAGA
ATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCAGATTGTGGTTACAGA
Intron 4 GTAAATACTG ... GAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.73 | 11 | 29 | 20.3 |
| A2 | 75.23 | 5 | 22 | 8.7 |
| A3 | 75.34 | 8 | 30 | 19.3 |
| A4 | 100 | 0 | 8 | 2.3 |
| A5 | 58.33 | 3 | 4 | 4.7 |
| A6 | 73.31 | 28 | 84 | 73.7 |
| A7 | 79.97 | 22 | 98 | 81.7 |
| A8 | 68.16 | 85 | 197 | 177 |
| A9 | 63 | 61 | 116 | 98 |
| A10 | 86.76 | 8 | 71 | 35 |
>TRINITY_DN43678_c0_g1_i4 from sample A8 / Example spliced isoformTATTGCAGACTTGTTACTTCTGGGCAAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCC
TACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTTTGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCAGATTG
TGGTTACAGATATATCAAACTTTCGCAAAAGCCTTGATTCTGCTTAGGAATTTGCATCACCTGCTTACAGTCTTATACAAAAAAGAGG
>TRINITY_DN43678_c0_g1_i6 from sample A8 / Example unspliced isoform:TATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAG
TGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGC
TTGGAGGTGCATGTTGGCTTCATTTGCCTACAATAGAAGGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGAT
CAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGgtaaatactgatgttttgtcattcttatggctgtataaataatcgttgtcacttctctccaatttcaattcacaaagataagttgaatttgcagGGC
AAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGC
Intron 5 GTTAGACAGA ... TCCTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.14 | 15 | 49 | 37 |
| A2 | 60 | 19 | 26 | 31 |
| A3 | 58.49 | 22 | 28 | 34 |
| A4 | 62.41 | 25 | 31 | 52 |
| A5 | 68.75 | 5 | 8 | 14 |
| A6 | 69.88 | 25 | 45 | 71 |
| A7 | 68.53 | 45 | 74 | 122 |
| A8 | 63.78 | 69 | 95 | 148 |
| A9 | 60.29 | 54 | 70 | 94 |
| A10 | 63.44 | 34 | 64 | 54 |
>TRINITY_DN43678_c0_g1_i6 from sample A8 / Example spliced isoformTATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAG
TGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGC
TTGGAGGTGCATGTTGGCTTCATTTGCCTACAATAGAAGGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGAT
CAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGC
AAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGC
>TRINITY_DN43678_c0_g1_i2 from sample A8 / Example unspliced isoform:CCTCAGTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGGCATTCAGAGTCCACAGCGGAGCGGACCGCCTGCCATCAAACCTCCAAAACAACAACACATTCGCTCAAATTCC
ACTTGGCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGGGAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATGGTAATGGGAAGGAAAATG
GGAAGGAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAGAATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAATGTGGAGAAGCTAAGGTTT
CAGCTTTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGATTCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGCAGAAGGCTACTTGGAGGC
ATTTATTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCTAAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAGAATTGGAAAGGGTCATTG
ATGAAGATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGAGGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAATATGTAATTACTTTTGAT
TGGCAACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTCAGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGAAATTTATGTGACAATGAA
AGAGGGTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCAGTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTTATACTATGCGCATAGTGA
ATACGAGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCTTGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATC
TTGATAAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGCAGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGC
TTTGGCAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATTCTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAAC
TCCATGTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAA
GATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAGCTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGG
CAAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCAGAACAACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTA
TAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCATTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGAT
GCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACCTCCAAATTTTCGGGGATA
TTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATGTTGGCTTCATT
TGCCTACAATAGAAGGgttagacagagcttgcgtggaaagtaaatcaattatttttgtggaaatgcagttagcacatatccgtttgctgtgttcttcctttgctcagttcagctttcaacagccggcatttgatctaaatatctctattccttgacagTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGG
GAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGT
ATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAATAATACCTCT
TGTTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTT
TGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCAGATTGTGGTTACAGATATATCAAACTTTCGCAAAAGCCTTGATTCTGCTTAGGAATTTGCATCACCTGCTTACAGTCTTATACAAAAAAGAGG
Intron 6 GTATTGCAGA ... GAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.09 | 18 | 26 | 26 |
| A2 | 64.29 | 10 | 25 | 11 |
| A3 | 69.62 | 12 | 32 | 23 |
| A4 | 75 | 2 | 9 | 3 |
| A5 | 62.5 | 3 | 4 | 6 |
| A6 | 63.95 | 53 | 95 | 93 |
| A7 | 69.82 | 43 | 97 | 102 |
| A8 | 59.56 | 147 | 206 | 227 |
| A9 | 56.6 | 97 | 124 | 129 |
| A10 | 70 | 24 | 69 | 43 |
>TRINITY_DN44835_c0_g3_i5 from sample A7 / Example spliced isoformCTAAAACCCCTTCTAAACCCTCAGTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGGCATTCAGAGTCCACAGCGGAGCGGACCGCATGCCATCAAACCTCCAAAACAACAA
CACATTCGCTCAAATTCCACTTGGCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGGGAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATG
GTAATGGGAAGGAAAATGGGAAGGAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAGAATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAAT
GTGGAGAAGCTAAGGTTTCAGCTTTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGATTCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGC
AGAAGGCTACTTGGAGGCATTTATTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCTAAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAG
AATTGGAAAGGGTCATTGATGAAGATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGAGGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAA
TATGTAATTACTTTTGATTGGCAACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTCAGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGA
AATTTATGTGACAATGAAAGAGGGTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCAGTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTT
ATACTATGCGCATAGTGAATACGAGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCTTGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTG
AAAATTCCTCGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGCAGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTT
TATCGATGAAGTTGATGCTTTGGCAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATTCTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTG
GGCGCATAGATCGTGAACTCCATGTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCAC
AATGAAATATCTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAGCTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCAC
TCACTTGCTCCCTGGTGGCAAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCAGAACAACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTA
TTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCATTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATT
GAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACC
TCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAG
GTGCATGTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTT
TCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTT
GCACTACCAATGCAAGGGCAAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAA
AGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTTTGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCA
>TRINITY_DN44835_c0_g3_i4 from sample A7 / Example unspliced isoform:CTAAAACCCCTTCTAAACCCTCAGTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGGCATTCAGAGTCCACAGCGGAGCGGACCGCATGCCATCAAACCTCCAAAACAACAA
CACATTCGCTCAAATTCCACTTGGCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGGGAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATG
GTAATGGGAAGGAAAATGGGAAGGAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAGAATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAAT
GTGGAGAAGCTAAGGTTTCAGCTTTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGATTCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGC
AGAAGGCTACTTGGAGGCATTTATTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCTAAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAG
AATTGGAAAGGGTCATTGATGAAGATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGAGGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAA
TATGTAATTACTTTTGATTGGCAACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTCAGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGA
AATTTATGTGACAATGAAAGAGGGTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCAGTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTT
ATACTATGCGCATAGTGAATACGAGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCTTGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTG
AAAATTCCTCGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGCAGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTT
TATCGATGAAGTTGATGCTTTGGCAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATTCTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTG
GGCGCATAGATCGTGAACTCCATGTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCAC
AATGAAATATCTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAGCTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCAC
TCACTTGCTCCCTGGTGGCAAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCAGAACAACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTA
TTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCATTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATT
GAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACC
TCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAG
GTGCATGTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTT
TCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTT
GCACTACCAATGCAAGgtattgcagacttgttacttctggtaaatactgatgttttgtcattcttatggctgtataaataatcgttgtcacttctctccaatttcaattcacaaagataagttgaatttgcagGGCAAATCAATCTATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACA
ACACGAAATAATACCTCTTGTTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAA
TACTGTGCTAGCATGCTTTGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCA
Intron 7 GTAATCCTGC ... TCCTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.85 | 19 | 47 | 37 |
| A2 | 57.89 | 24 | 35 | 31 |
| A3 | 60.78 | 20 | 28 | 34 |
| A4 | 63.77 | 25 | 36 | 52 |
| A5 | 59.18 | 10 | 15 | 14 |
| A6 | 70.24 | 25 | 47 | 71 |
| A7 | 67.9 | 52 | 98 | 122 |
| A8 | 59.46 | 90 | 116 | 148 |
| A9 | 60.24 | 66 | 106 | 94 |
| A10 | 60.19 | 41 | 70 | 54 |
>TRINITY_DN45621_c0_g1_i2 from sample A10 / Example spliced isoformGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGAT
TTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATAT
GTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCG
GATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTTTGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTA
ACTATAAAAGCAAAGGGTTTATCAGATTGTGG
>TRINITY_DN45621_c0_g1_i4 from sample A10 / Example unspliced isoform:TTTACTAATCATGATTTCTCAACTTGAAAATCACAATTAAGTAATATTTCAACCCTATACTTGCATGGATTGAAATTATTAGCTTACTGATTTCTTCTTCTTGACAGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGT
GCACCTCCAAATTTTCGGGGATATTATGAGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGgtaatcctgctggaaaatctttcatatactatgaattgct
tggaggtgcatgttggcttcatttgcctacaatagaagggttagacagagcttgcgtggaaagtaaatcaattatttttgtggaaatgcagttagcacatatccgtttgctgtgttcttcctttgctcagttcagctttcaacagccggcatttgatctaaatatctctattccttgacagTTGGAAAAATGGATCCTGT
GGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGT
TATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATCTATAAAGTTATTGGTATGTTTGTCTGTGCAGACAATTGAAATCATGATAA
GAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAAC
ATAAATACTGTGCTAGCATGCTTTGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCAGATTGTGG
Intron 8 GCGATAAGTG ... CTACCATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.06 | 64 | 92 | 47 |
| A2 | 68.07 | 19 | 46 | 35 |
| A3 | 52.49 | 43 | 67 | 28 |
| A4 | 55.77 | 36.5 | 56 | 36 |
| A5 | 73.58 | 7 | 24 | 15 |
| A6 | 60.58 | 41 | 79 | 47 |
| A7 | 58.72 | 90 | 158 | 98 |
| A8 | 61.76 | 91 | 178 | 116 |
| A9 | 68.45 | 53 | 124 | 106 |
| A10 | 60.44 | 54 | 95 | 70 |
>TRINITY_DN121265_c0_g1_i8 from sample A2 / Example spliced isoformCTCACTTGCTCCCTGGTGGCAAGATTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCAGTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTC
ACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCT
TGGCAACATGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATCTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGC
ATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGG
AGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATC
TATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAATAATACCTCTTGTTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTAC
AGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGAC
>TRINITY_DN121265_c0_g1_i5 from sample A2 / Example unspliced isoform:AAAGATATTAATTATTACAATTAAGATACCACAAATACGTCCCATCCCGTGTCTTCTAAAACCCCTTCTAAACCCTCAGTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGG
CATTCAGAGTCCACAGCGGAGCGGACCGCCTGCCATCAAACCTCCAAAACAACAACACATTCGCTCAAATTCCACTTGGCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGG
GAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATGGTAATGGGAAGGAAAATGGGAAGGAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAG
AATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAATGTGGAGAAGCTAAGGTTTCAGCTTTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGAT
TCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGCAGAAGGCTACTTGGAGGCATTTATTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCT
AAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAGAATTGGAAAGGGTCATTGATGAAGATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGA
GGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAATATGTAATTACTTTTGATTGGCAACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTC
AGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGAAATTTATGTGACAATGAAAGAGGGTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCA
GTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTTATACTATGCGCATAGTGAATACGAGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCT
TGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATCTTGATAAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGC
AGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGCTTTGGCAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATT
CTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAACTCCATGTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGC
AGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAAGATATCATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAG
CTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGGCAAGGAATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCTGAACAACTTATA
TTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGTCCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCAGTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGC
TCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAAGAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGT
CGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGgcgataagtgcacctccaaattttcggggatattatgaggacttggatatatatccagcaccccttcatcgttgctagattctacttttacttgaagttgagataaatttctgattttgaatactgcattggcaaaacatctgttccatttgagatcca
ctaccataagGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATCTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAATCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGC
ATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGG
AGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGGTATTGCAGACTTGTTACTTCTGGTAAATACTGATGTTTTGTCATTCTTATGGCTGTATAAATAATCGTTGTCACTTCTCTCCAATTTCAATTCACAAAGATAAGTTGAATTTGCAGGGCAAATCAATC
TATAAAGTTATTGGTGTGTTTGTCTGTGCAGACAATTGAAATCATGATAAGAACAACACGAAATAATACCTCTTGTTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTAC
AGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGAC
Intron 9 GTATTGCAGA ... GTCTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.31 | 11.2 | 26 | 34 |
| A2 | 71.66 | 8.4 | 25 | 16 |
| A3 | 75.95 | 7.7 | 32 | 15 |
| A4 | 65.39 | 4.6 | 9 | 8 |
| A5 | 73.33 | 2 | 4 | 7 |
| A6 | 78.32 | 25.4 | 95 | 81 |
| A7 | 69.88 | 44.4 | 97 | 105.3 |
| A8 | 71.46 | 87.9 | 206 | 223 |
| A9 | 72.41 | 51.2 | 124 | 138 |
| A10 | 65.99 | 29.2 | 69 | 41.7 |
>TRINITY_DN42768_c0_g1_i6 from sample A6 / Example spliced isoformCAGAGATTGACATTCCATATTATCTATATGGTTGCTAATTTCTAGCTGAATATCACTGCTGAAAGAATTATGAATGCCATTTTGTTTCAACAGGTAATCCTGCTGGAAAATCTTTCATATACTATGAATTGCTTGGAGGTGCATCTTGGCTTCATTTGCCTACAATAGAAGGGTTAGACAGAGCTTGCGTGGAAAGTAAA
TCAATTATTTTTGTGGAAATGCAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCTAAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAG
TTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTTGGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCT
TATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCAGAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTTTGAG
AATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCAGATTGTGGTTACAGA
>TRINITY_DN42768_c0_g1_i5 from sample A6 / Example unspliced isoform:GTTCAGTTCGAAATCCATTTATCCATCGCTCACGGTGATATGGTGGCGAAGGCATTGCACGGATATCGTTGGTAGGACTTCGTTCCGCCATTGACACAGCCAAGCATTTTCTCCATTAATGGCATTCAGAGTCCACAGCGGAGCGGACCGCCTGCCATCAAACCTCCAAAACAACAACACATTCGCTCAAATTCCACTTG
GCTACCTTGAAAGCTCATGCGTTCATTCAGCCACTCGCAGAAAGGTAAGAATAACTCGTCTTTCAAGCCTTCGCAGGAGAGACTTTGAGAATACGAAGCTCTGGTCTACTTACAGGCCCAGGGAAAACATTTTAATCGTCAGAGCAATTAATGAAGGGGGCAATGCAGTACGGAATGGTAATGGGAAGGAAAATGGGAAG
GAAGATTTAACCTTGACCAGAGTTTGGCAGGCATTTGGCAGAGCAGTGGATAGAATTGGTCAGAAATTTCAGAGGCGGTTGAAAGAGGAGACCGGGATCGATATTGAGCAAGTTGAGGCAAGAATTGCAGATTCTTCAAGGAAAGTAGAAGAGTACAGGCAGCAAGGCATTCAGAATGTGGAGAAGCTAAGGTTTCAGCT
TTGGCCTCGGTTTGTCGCCTGGAATCAGTTGGAGCGCTGGAAGGATTTCAAGCACTGGGAATCTGGGCGTATTGTTGTGTTCGTACTTTATGTCTTATCTGTTGCAGTCTCATTTCAAGGATTCTTTCTAGCTTTCAAAAGGTCACGTGTATACCTACAGCCAAACAGGAGACTTGCAGAAGGCTACTTGGAGGCATTTA
TTCCTGAGCCTTCACCTAGGAACATACAAGAGTTAAAGAAAGGTCTTTGGAGAAGATACATGCCAGAAGGTCTCAAAGTGAATAAGTACTATCTTGGACCTGACGGAGCCTATCATCACTCTAAAGATTATGTTGGGCAAGATGCATGGGAAGATGATCCTCAAACCTCTCAATTAGAATTGGAAAGGGTCATTGATGAA
GATTACGAATTCAATAAAGAGCAAAAGCAAGAATTAAAAAAAGATCTTGGCTTGAGAGCTGAGGAAGGCAGAAGACAGGTAACAGCTAGGGGGACATGGCAGGAAAGGCTTGCAAAGTGGGAGGACATTCTAGAAAAGGAAAAGTGGCAAGAGGATATTGATGCTTTAACTTCTAAATATGTAATTACTTTTGATTGGCA
ACAAATGAAAGAAAATTTTCGCAAGGATCAAGAGGAGAAAAGGCCCAATAGCCATCGGGGTAGATGGATTACAAAACGATGGTGGCAGTATCGCCCAAAACTACCTTATACATATTTGATTCAGAAAATTGAATGTTTAGAGGTTAAAGAAGCGGTTTTCAGCGAGGATTTCAAGGAAATTTATGTGACAATGAAAGAGG
GTTTCCCCTCGGAATATATTGTTGACATACCTGTGGATCCTTACCTTTTTGAGCTACTTACAAGATGTGGTGTGGAGGTGGATATTCTACACACAACCCATCTTCACTACATTCTACGAGCAGTTGCTGTTTTAGCCCCAGGCTTTTTCTTACTCTGGTGTATTAAACATGCGCTTTATACTATGCGCATAGTGAATACG
AGCCTGTTAGTTGACATTGCGAAATCAAACAATGAGATCATGATTTTGCCAGGCGAAGCTGAAGGTGCAGCAGCATCAGGATATAGTGATGTTGTTTTGGGAGGGGATGTATGGGATCTTCTTGATGAGATAACGATCTATATGAAGAATCCTTTGCAATATTACAAGAAAAGGGTGAAAATTCCTCGGGGTATCTTGAT
AAGTGGGCCACCTGGTACAGGGAAGACACTTCTTGCTCGTGCAATAGCAAGAGAGAGTGGGGTCCCATTTGTTTTTGCTTCAGGTGCTGAGTTTGCAGAATCTGGAACCAAAAGTGGATCGCAGAAGATTTTTGAGTTGTTTTTCACTGCTAGGGCAAATGCACCATCATTTATTTTTATCGATGAAGTTGATGCTTTGG
CAGGAAAGAATGTAAATGATGATCCTGAGCGAAAATCCACTTTTGAACAACTGTTATCACAATTGGATGGAGAAGAGGATAACACAAATGTTGAAAGGTACTCTCTAAGGCAGGCAGTAATTCTGATTTGTGCAACTAATCGGCCCGATGAACTAGATGAGAGATTTCTTCGAGCTGGGCGCATAGATCGTGAACTCCAT
GTAGGTTTGCCTGGAGAAAAGGACCGTGTATCAATTTTTTCCGTTCATAGTCAAGGGAAGCACTTAGCAAAGGATGTAGATTTCAAGAAGCTTGTTTTCCGGACAATAGGTTACTCAGGCGCAGATATCCGAAATCTTGTCAATGAGTCTGGCATTATGGCAGTTCGGAAGGGCCACAATGAAATATCTCAACAAGATAT
CATTGATGTATTAGATAAACAATTATTTGAGAGCATGGGGTTAGTCCTTACAGAGGATGAGCAGCGAATGTATGAAAAAAATGTGACATTTGAGAATAAAAGGTTGCTGGCAGTACATGAAGCTGGTCATATACTTTTAGCTCATTTGTTTCCTCAGTTTGATTGGCATGCTTTCACTCACTTGCTCCCTGGTGGCAAGG
AATCTGCATTAAGTGTGTTTTATCCTAGGGAAGATATTTTGCAAATGGGTTATCCGACTGTAGGGTACTTAAAAATGCAAATGGTGGTAGCACATGGTGGTCGCTGTGCAGAACAACTTATATTTGGTGATGATATAACTGATGGAGGTCGAGATGATCTGGCAAGAATTTCAAGTATTGCCCGGGAGTTAGTTATAAGT
CCTGCAAATCCACGACTGGGCTTACTTCGTTTGACATGGAATGGTACATATGAAGCTCCATTTAGCAACCAGGAAGGGAGTCTGATTAAAAATGAGTGGGAGAGGCCAGGAACGGAGATTGCTCAAATGTCTATTGAGCTTTCAGAATTGTTCACTCGAGAAGTGACACGTTATATTGAAGAGACAGAAGAAGATGCAAA
GAATGCTTTGAGGAGAAATAGGCATATCTTCGACAGATTAACAGCTGAACTGTTGGAACGCACAAAAATTTCTGGCATGGAAGTGGAAGAAATAGTGAAATCAATGAACCCTGTAATGATGTCGGACCTAATGCAGACACCAAATATCAACCTTGGCAACATGGCGATAAGTGCACCTCCAAATTTTCGGGGATATTATG
AGGACTTGGATATATATCCAGCACCCCTTCATCGTTGCTAGATTCTACTTTTACTTGAAGTTGAGATAAATTTCTGATTTTGAATACTGCATTGGCAAAACATCTGTTCCATTTGAGATCCACTACCATAAGTTAGCACATATCCGTTTGCTGTGTTCTTCCTTTGCTCAGTTCAGCTTTCAACAGCCGGCATTTGATCT
AAATATCTCTATTCCTTGACAGTTGGAAAAATGGATCCTGTGGTTTTCATGAACCATTTGGAGGGAAGTTTTGCATTTACGAGTGTTTGCTACACATTCTTACAATAGTTACAAAGCAATTACATAGGAAAGGCCTAAACTGGTTGAGCTTCAGCATACCAATGATATGTGGGACTCCTGATCAATTTCGGAGTAGAGTT
GGCCAGCATTGTTTTTATGTTTGGGGATAAACTTCGTCAGTTATTTGCACTACCAATGCAAGgtattgcagacttgttacttctggtaaatactgatgttttgtcattcttatggctgtataaataatcgttgtcacttctctccaatttcaattcacaaagataagttgaatttgcagggcaaatcaatctataaagtt
attggtgtgtttgtctgtgcagACAATTGAAATCATGATAAGAACAACACGAAAGAATACCTCTTTCTTATTGAATGAATTAAAGGCAAGCCTTTTATATAAAGAGATGCAAATGTTTTGGAGCATCGGATTCGCTTGACCACTGGCAGATTCATCCTACAAAAGAAAATGAGCAAATTGATGTACGTTACAGCTAGGCA
GAGTTAAAACTCGATAGCATATGCTGAGCGATTCGACAAACATAAATACTGTGCTAGCATGCTTTGAGAATATCATAAATATCGTTGTTTTACATTTCTTTTTTCAGGTTGAAGGAATATATTTATTAACTATAAAAGCAAAGGGTTTATCAGATTGTGGTTACAGA