sp|Q9FK07|CLPX1_ARATH ----> CLP protease regulatory subunit CLPX1, mitochondrial

Intron 1 GTAAATATGC ... CTTAACACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	41.14	8.6	6	6
A2	33.33	5	1	4
A3	38.46	4	2	3
A4	36.72	10.8	8	4
A5	45.67	4.4	2	5
A6	14.59	17.6	1	5
A7	20	8	0	4
A8	18.99	23.6	2	9
A9	8.86	20.6	0	4
A10	19.85	30.4	6	9

>TRINITY_DN129161_c4_g1_i18 from sample A1 / Example spliced isoform

CATATGGATCCTTTGCTTTGTTGTGGTCATGTAAGTTGAGAGATCATGTAGAAAAGGACATTATGTGATTTGACATGTTTATCTATGTCTAGGTTGTAAATGTTCCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTG
GAGAAAACAATTGCAGAAAGGTAAAGTTGTCTACACTGCTTGTTAACTATTTACCAAAAACTACTATGTAAACTGTCTGCCAATAAATAAATTTGGTTCATATGTTTGTCCTATTTTATTTCTCACCCATGGAAGAATCAAGATACCAGACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAG
GTCCAGTGGCCTAACAAATACAGCGATCACATCATCTTTACTGGAGTTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTTTAAGTGAAGACCAACTTGTTAAGGTTCTCACGGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAAT
TGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCTATGTTCGAGGT

>TRINITY_DN129161_c4_g1_i12 from sample A1 / Example unspliced isoform:

CTAATATCATATATGGATAATAAAGAGGGACTATTTAGTGCTTTAACTTTTAATCTGTTGCTTATTCTGGGTTATTGAAGGATTTCAGTTTTTAATGACATTGTCCTGCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGGTAAAGTTGTCTACACTG
CTTGTTAACTATTTACCAAAAACTACTATGTAAACTGTCTGCCAATAAATAAATTTGGTTCATATGTTTGTCCTATTTTATTTCTCACCCATGGAAGAATCAAGATACCAGACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAGGTCCAGTGGCCTAACAAATACAGCGATCACATCATCTT
TACTGGAGTTGgtaaatatgccttttgaacagcagaaattgcaaataaatgccatttgaatatagcctgtaaattctgttcaccctaaaattaccttacaccttgttgcttaacacagGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTT
TAAGTGAAGACCAACTTGTTAAGGTTCTCACGGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAATTGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCT
ATGTTCGAGGT

Intron 2 GTGCATCTAT ... TGTCCTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.03	14.7	1	7.7
A2	42.98	6.3	4	4.7
A3	36.51	10.3	4	8
A4	13.87	9.7	0	3
A5	10.43	7.3	1	0.7
A6	13.19	29.7	7	2
A7	5.99	31.7	2	2.3
A8	7.49	38	3	3.7
A9	10.1	23.3	4	1.3
A10	13.33	36	6	6

>TRINITY_DN106832_c0_g1_i2 from sample A2 / Example spliced isoform

TATAAGATGGCCTTCCCTGTATTTTGGTGCGTTGCTGATACGAAGACGCGATAATATTTATAAATAAATCCAAGAACAGCTGCATTCATTCATTCCCCGACGAGATCTGAATGCACGTTCGTCTCATCTGCAAAATTTCCGTCTCCTTCTCAGTGGTCCGTGGATTGAAGTCCAGTCTTCGCACGCTTCCCCTCCTCAGA
GGTCTGGGAGTCGAGTCTCCAGTCTCTGCCCACCTCAATTGCATAACACCACACAATGGCGCGATGGAGACGCCTGGGAAAATTGGCAGTCTCGGAGATTCGAACGTGGAAAAATAGCAATTGCAATTCCAGAAATCCTACACAACAACTGAATCCCAAATTCAATCCTGTGAACAAATCTTCAGATGGGAGATTAAATT
CCTCGAGCTTCAGATCTCTGGCGTGGCCTGCAATTGCAGAAGAATGCCGCGACGGCAGAATGGGGCTCAATTTGCGTGAAATGTCTGTAAAACGCGAGAAGCCGCCGGCGGATTCGCAACCGGAAAACGGTCAGAGTAGTCCACCGGGAGTAGGGGTCGATGCGCCCTCGATTCCTCTGATCCTTGTCGATTCAAACCGG
GCGCGCTCGCGTCACGGAAAGGGAAGATCCGGTGCAGCGGGTGCGACTAAAGAAGCTTGGGGCAGTTCGAATTTCGGCAAGGATATGCCTACTCCCAGAGAAATGTACGAGGCCCTTGACAAATTTGTTGTCGGTCAGGAGCGTGCAAAAAAGGTTTTAGCAGTTGCAGTTCATAATCATTACAAGCGGATATTATATGA
ATTGTCAAAGAAACATAAATACCAGGATGTATCGTCAGAAGGGTCAGATGCTTGTCCTCTAGAGGAGCATATTGATGACAGTGATATGGTGGAGCTGGAGAAAAGCAATATTCTTATTATGGGTCCTACTGGCTGTGGGAAGACATTGCTTGCAAAAACATTGGCTAAATTTGTAAATGTGCCCTTTGTCATCGCCGATG
CAACAAACTTGACACAGGCAGGGTATGTAGGGGAAGATGTGGAGTCTATTTTGTATAAACTTCTTATGGCAGCTGAGTTCAATGTTGCAGCGGCTCAACAAGGCATTGTTTATATTGATGAAGTTGATAAAATTACAAAGAAGGCTGAAAGCCTGAATATCAGTAGGGATGTGTCTGGAGAGGGTGTTCAGCAGGCATTG
CTAAAAATGCTGGAAGGAACGGTTGTAAATGTTCCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAG
GTCCAGTGGCCTAACAAATACAGCGATCACATCATCTTTACTGGAGTTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTTTAAGTGAAGACCAACTTGTTAAGGTTCTCACAGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAAT
TGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCAACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCTATGTTCGAGATTCCAGAAGCAACAACAGGACATAATAGAATAGATGCTGTTGTTGTTGATGAAGAGGTG
GTATCATCACCAAAATCAGAGGGAAAAGTGCCCAAAATCCTTCGCGGAGTGGGTGCATTGGAGAAATATCTTTTAGAACAGGAAGGAAAGGATTCGCTGGTCGTGATTGATGCTCCTCAGGAGGCAGAAGCAGAGTCGGAGCTTACTGGGAGAGCTGCTGTGATGTAACTGTTTCGCTTGAAGAAAGTAGCCTCATCAGA
GTCAATTAAAAGAACCATATATCCTCCATTCTACAACGAAGAATTGGAAGTTGTAATCCATCCATTATTATTACTGGCCAACAATGTTGGCTTGTAACTGCTCTTCTGGCTCCAGTGAAAACCCTTCTGGGTTGGGTGCAACAAACAGGACTACAGGAAAATTATTGTGTACAGAAACTTGCTGAAGCTGTACTCTTGAT
CGTAACCACAAAATAAATGTGGTTGTAGTTTTATCCAATTAATTTAATGGAAAAGACACGGGCATCTTCATTTGATTATTCCATCTAAGATGTATGTGGCATCTCCACG

>TRINITY_DN106832_c0_g1_i3 from sample A2 / Example unspliced isoform:

TATAAGATGGCCTTCCCTGTATTTTGGTGCGTTGCTGATACGAAGACGCGATAATATTTATAAATAAATCCAAGAACAGCTGCATTCATTCATTCCCCGACGAGATCTGAATGCACGTTCGTCTCATCTGCAAAATTTCCGTCTCCTTCTCAGTGGTCCGTGGATTGAAGTCCAGTCTTCGCACGCTTCCCCTCCTCAGA
GGTCTGGGAGTCGAGTCTCCAGTCTCTGCCCACCTCAATTGCATAACACCACACAATGGCGCGATGGAGACGCCTGGGAAAATTGGCAGTCTCGGAGATTCGAACGTGGAAAAATAGCAATTGCAATTCCAGAAATCCTACACAACAACTGAATCCCAAATTCAATCCTGTGAACAAATCTTCAGATGGGAGATTAAATT
CCTCGAGCTTCAGATCTCTGGCGTGGCCTGCAATTGCAGAAGAATGCCGCGACGGCAGAATGGGGCTCAATTTGCGTGAAATGTCTGTAAAACGCGAGAAGCCGCCGGCGGATTCGCAACCGGAAAACGGTCAGAGTAGTCCACCGGGAGTAGGGGTCGATGCGCCCTCGATTCCTCTGATCCTTGTCGATTCAAACCGG
GCGCGCTCGCGTCACGGAAAGGGAAGATCCGGTGCAGCGGGTGCGACTAAAGAAGCTTGGGGCAGTTCGAATTTCGGCAAGGATATGCCTACTCCCAGAGAAATGTACGAGGCCCTTGACAAATTTGTTGTCGGTCAGGAGCGTGCAAAAAAGGTTTTAGCAGTTGCAGTTCATAATCATTACAAGCGGATATTATATGA
ATTGTCAAAGAAACATAAATACCAGGATGTATCGTCAGAAGGGTCAGATGCTTGTCCTCTAGAGGAGCATATTGATGACAGTGATATGGTGGAGCTGGAGAAAAGCAATATTCTTATTATGGGTCCTACTGGCTGTGGGAAGACATTGCTTGCAAAAACATTGGCTAAATTTGTAAATGTGCCCTTTGTCATCGCCGATG
CAACAAACTTGACACAGGCAGGGTATGTAGGGGAAGATGTGGAGTCTATTTTGTATAAACTTCTTATGGCAGCTGAGTTCAATGTTGCAGCGGCTCAACAAGGCATTGTTTATATTGATGAAGTTGATAAAATTACAAAGAAGGCTGAAAGCCTGAATATCAGTAGGGATGTGTCTGGAGAGGGTGTTCAGCAGGCATTG
CTAAAAATGCTGGAAGGAACGGTTGTAAATGTTCCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGgtgcatctatttgtattgagaacattttcgtgatcttgttgctccaattgtttacctgtttcatcgatattatgtgtatttgtgttaaaaaaagcatatctttctatcacaaggatacgata
ctaatatcatatatggataataaagagggactatttagtgctttaactttcaatctgttgcttattctgggttattgaaggatttcagtttttaacgacattgtcctgcagATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGACGACAATATTCTTCAAT
CGGCTTTGGAGCACCTGTACGGGCAAATATGAGGTCCAGTGGCCTAACAAATACAGCGATCACATCATCTTTACTGGAGTT

Intron 3 GTAAAGTTGT ... CCCATGGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	42.81	20	13.5	16.5
A2	16.67	5	0	2
A3	67.81	7	16.5	13
A4	53.17	11	7	18
A5	69.8	4	8	10.5
A6	15.36	23	5	4
A7	7.14	36	5.5	0.5
A8	12.91	38	4.5	7
A9	15.51	22	6.5	2.5
A10	14.17	35	6	6

>TRINITY_DN129161_c4_g1_i4 from sample A1 / Example spliced isoform

CATATGGATCCTTTGCTTTGTTGTGGTCATGTAAGTTGAGAGATCATGTAGAAAAGGACATTATGTGATTTGACATGTTTATCTATGTCTAGGTTGTAAATGTTCCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTG
GAGAAAACAATTGCAGAAAGAATCAAGATACCAGACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAGGTCCAGTGGCCTAACAAATACAGCGATCACATCATCTTTACTGGAGTTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTT
GTCAGTATTTCAGCTTTAAGTGAAGACCAACTTGTTAAGGTTCTCACGGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAATTGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAA
CCTTTTGACTGAAGCTATGTTCGAGGTCGTGATTGATGCTCCTCAGGAGGCAGAAGCAGAGTCGGAGCTTACTGGGAGAGCTGCTGTGATGTAACTGTTTCGCTTGAAGAAAGTAGCCTAATCAGAGTCAATTAAAAGAACCATATATCCTCCATTCTACAACGAAGAATTGGAAGTTGTAATCCATCCATTATTATTAC
TGGCCAACAATGTTGGCTTGTAACTGCTCTTCTGGCTCCAGTGAAAACCCTTCTGGGTTGGGTGCAACAAACAGGACTACAGGAAAATTATTGTGTACAGAAACTTGCTCAAGCTGTACTCTTGATCGTAACCACAAAATAAATGTGGTTGTAGTTTTATCCAATTAATTTAATGGAAAAG

>TRINITY_DN129161_c4_g1_i12 from sample A1 / Example unspliced isoform:

CTAATATCATATATGGATAATAAAGAGGGACTATTTAGTGCTTTAACTTTTAATCTGTTGCTTATTCTGGGTTATTGAAGGATTTCAGTTTTTAATGACATTGTCCTGCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGgtaaagttgtctacactg
cttgttaactatttaccaaaaactactatgtaaactgtctgccaataaataaatttggttcatatgtttgtcctattttatttctcacccatggaagAATCAAGATACCAGACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAGGTCCAGTGGCCTAACAAATACAGCGATCACATCATCTT
TACTGGAGTTGGTAAATATGCCTTTTGAACAGCAGAAATTGCAAATAAATGCCATTTGAATATAGCCTGTAAATTCTGTTCACCCTAAAATTACCTTACACCTTGTTGCTTAACACAGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTT
TAAGTGAAGACCAACTTGTTAAGGTTCTCACGGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAATTGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCT
ATGTTCGAGGT

Intron 4 GTAAGATAGG ... TCTCTTCTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	39.54	10	5	8
A2	27.27	8	1	5
A3	0	5	0	0
A4	25.36	14.8	5	5
A5	50	2	0	4
A6	5.26	18	2	0
A7	14.59	20.5	1	6
A8	8.44	21.8	2	2
A9	14.71	29	5	5
A10	3.7	13	0	1

>TRINITY_DN129161_c4_g1_i18 from sample A1 / Example spliced isoform

CATATGGATCCTTTGCTTTGTTGTGGTCATGTAAGTTGAGAGATCATGTAGAAAAGGACATTATGTGATTTGACATGTTTATCTATGTCTAGGTTGTAAATGTTCCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTG
GAGAAAACAATTGCAGAAAGGTAAAGTTGTCTACACTGCTTGTTAACTATTTACCAAAAACTACTATGTAAACTGTCTGCCAATAAATAAATTTGGTTCATATGTTTGTCCTATTTTATTTCTCACCCATGGAAGAATCAAGATACCAGACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAG
GTCCAGTGGCCTAACAAATACAGCGATCACATCATCTTTACTGGAGTTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTTTAAGTGAAGACCAACTTGTTAAGGTTCTCACGGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAAT
TGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCTATGTTCGAGGT

>TRINITY_DN129161_c4_g1_i1 from sample A1 / Example unspliced isoform:

GATACGAAGACGCGATAATATTTATAAATAAATCCAAGAACAGCTGCATTCATTCATTCCCCGACGAGATCTGAATGCACGTTCGTCTCATCTGCAAAATTTCCGTCTCCTTCTCAGTGGTCCGTGGATTGAAGTCCAGTCTTCGCACGCTTCCCCTCCTCAGAGGTCTGGGAGTCGAGTCTCCAGTCTCTGCCCACCTC
AATTGCATAACACCACACAATGGCGCGATGGAGACGCCTGGGAAAATTGGCAGTCTCGGAGATTCGAACGTGGAAAAATAGCAATTGCAATTCCAGAAATCCTACACAACAACTGAATCCCAAATTCAATCCTGTGAACAAATCTTCAGATGGGAGATTAAATTCCTCGAGCTTCAGATCTCTGGCGTGGCCTGCAATTG
CAGAAGAATGCCGCGACGGCAGAATGGGGCTCAATTTGCGTGAAATGTCTGTAAAACGCGAGAAGCCGCCGGCGGATTCGCAACCGGAAAACGGTCAGAGTAGTCCACCGGGAGTAGGGGTCGATGCGCCCTCGATTCCTCTGATCCTTGTCGATTCAAACCGGGCGCGCTCGCGTCACGGAAAGGGAAGATCCGGTGCA
GCGGGTGCGACTAAAGAAGCTTGGGGCAGTTCGAATTTCGGCAAGGATATGCCTACTCCCAGAGAAATGTACGAGGCCCTTGACAAATTTGTTGTCGGTCAGGAGCGTGCAAAAAAGGTTTTAGCAGTTGCAGTTCATAATCATTACAAGCGGATATTATATGAATTGTCAAAGAAACATAAATACCAGGATGTATCATC
AGAAGGGTCAGATGCTTGTCCTCTAGAGGAGCATATTGATGACAGTGATATGGTGGAGCTGGAGAAAAGCAATATTCTTATTATGGGTCCTACTGGCTGTGGGAAGACATTGCTTGCAAAAACATTGGCTAAATTTGTAAATGTGCCCTTTGTCATCGCCGATGCAACAAACTTGACACAGGCAGGGTATGTAGGGGAAG
ATGTGGAGTCTATTTTGTATAAACTTCTTATGGCAGCTGAGTTCAATGTTGCAGCGGCTCAACAAGGCATTGTTTATATTGATGAAGTTGATAAAATTACAAAGAAGGCTGAAAGCCTGAATATTAGTAGGGATGTGTCTGGAGAGGGTGTTCAGCAGGCATTGCTAAAAATGCTGGAAGGAACGGTTGTAAATGTTCCA
GAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAGGTCCAGTGGCCTAACAAATACAGCGATCACATCATC
TTTACTGGAGTTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTTTAAGTGAAGACCAACTTGTTAAGGTTCTCACGGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAATTGTTTTCTATGGACAATgtaagataggacctgaacc
taatctttgtgcaatgtttttaaatgtgttgagaacaacagggttcattcaatgtgttgaaatcgatcattgagaagttacatttgtagtgcatcatagataatttatttgctgtgagcactcactaatctgtcatctcttctagGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAG
CTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCTATGTTCGAGGTAAATAGTTTGGAGTCTGGACACTTACTATTTCTTGTGTGTTTTAGGCTGTAAATAATATGTCATTTTCTCTTCGATGAGTTTATGTTAATTCACCA

Intron 5 GTAAAGTTGT ... AAGATACCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	43.04	20	13.8	16.5
A2	17.34	4.8	0	2
A3	66.18	7	16.4	11
A4	49.85	12	7.2	16.7
A5	63.12	4	8	5.7
A6	18.45	25	5.8	6.2
A7	8.5	37	6.6	0.7
A8	14.03	41	5.2	8.5
A9	20.41	25	7.4	6.2
A10	18.78	43	6.8	13.6

>TRINITY_DN129161_c4_g1_i17 from sample A1 / Example spliced isoform

ATTTTATTTTTCGTCATTCCCAAGGAAATGCATAATGATATTTGTTATGAAGTTCTTGAAATGATCTAGTAAAGTATGTTTGTTCAGAACATATGCATGTGATCTTGCTTGCTTGGACATTTTTGGAGTACATGTAATTGTTTATCAACAATGCAAGTGATGAAAAATCTGTTATATTAATGCACCCCCTTCTCATGTTA
AAATGATCGATTTCTGTAAGATACATTTCTCAATCTTAAATTCAGAGGCCTTCTTTGAAAGTAAAATGTGGATATTGCTTATACCTATCTGGTTGAGTTGGTACAGGCAGCTGAGTTCAATGTTGCAGCGGCTCAACAAGGCATTGTTTATATTGATGAAGTTGATAAAATTACAAAGAAGGCTGAAAGCCTGAATATTA
GTAGGGATGTGTCTGGAGAGGGTGTTCAGCAGGCATTGCTAAAAATGCTGGAAGGAACGGTTGTAAATGTTCCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTGGAGAAAACAATTGCAGAAAGACGACAATATTCT
TCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAGGTCCAGTGGCCTAACAAATACAGCGATCACATCATCTTTACTGGAGTTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTTTAAGTGAAGACCAACTTGTTAAGGTTCTCAC
GGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAATTGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCTATGCTCGAGATTCCAGAAGCAACAACAGGAC
ATAATAGAATAGATGCTGTTGTTGTTGATGAAGAGGTGGTATCATCACCAAAATCAGAGGGAAAAGTGCCCAAAATCCTTCGCGGAGTGGGTGCATTGGAGAAATATCTTTTAGAACAGGAAGGAAAGGATTCGCTGGTATGTTTCCTAGAAACTGTGTACATTAATCTTAATTTATGATTTCCATTAAAAATTTCATAA
GATGCATTTTTATAAGACTTTTTCCATCCTCTGCAGTTTTCTACTTTGTTGTTGTTCAACACCAATATTTATATAAAAAAAGCATCTTTTTCACCTTATATGGTTGCTGCTTTTGTTGCTTCTGCTTAGGCAGTTATCCACGTGATCTGAGCATTGATTTAGCTATTCTAAACACCTATTCACAATGCCTATAGTCTATT
GTGGCATCACCATGGATTGTCACCCAAGGTAGCCTACTTTGGGCTAGGATAAAGTCCACAAAATGTGGTGTTTGTTGAAGGAAATTCTCTTCCTTGGATCCCTTCCATTTTATATGGGCAAGTCTTACATGTTAT

>TRINITY_DN129161_c4_g1_i18 from sample A1 / Example unspliced isoform:

CATATGGATCCTTTGCTTTGTTGTGGTCATGTAAGTTGAGAGATCATGTAGAAAAGGACATTATGTGATTTGACATGTTTATCTATGTCTAGGTTGTAAATGTTCCAGAAAAGGGAACTCGCAAGAATCCTCGTGGTGATCACATTCAGATAGATACAAAGGATATTCTCTTCATATGTGGTGGGGCATTTGTGGACCTG
GAGAAAACAATTGCAGAAAGgtaaagttgtctacactgcttgttaactatttaccaaaaactactatgtaaactgtctgccaataaataaatttggttcatatgtttgtcctattttatttctcacccatggaagaatcaagataccagACGACAATATTCTTCAATCGGCTTTGGAGCACCTGTACGGGCAAATATGAG
GTCCAGTGGCCTAACAAATACAGCGATCACATCATCTTTACTGGAGTTGGCTGAGAGTAGTGACTTGGTTGCTTATGGCTTGATACCAGAGTTTGTTGGTCGATTTCCTGTTCTTGTCAGTATTTCAGCTTTAAGTGAAGACCAACTTGTTAAGGTTCTCACGGAGCCAAGAAATGCACTTGGCAGGCAGTATAGAAAAT
TGTTTTCTATGGACAATGTTAAGTTGCACTTCACAAAAGGTGCAATGCGACAGATTGCAAAGAAAGCATTAGCTAAGAGTACTGGAGCCCGTGGTTTACGTTCCATCCTTGAAAACCTTTTGACTGAAGCTATGTTCGAGGT