sp|Q851S7|PESC_ORYSJ ----> Pescadillo homolog
Intron 1 GTAGCTCCCA ... CTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.68 | 213 | 63 | 239.8 |
| A2 | 50.81 | 324 | 120 | 349.2 |
| A3 | 49.98 | 312 | 100 | 328.5 |
| A4 | 51.72 | 251 | 86.2 | 281.2 |
| A5 | 52.95 | 152 | 62 | 177.2 |
| A6 | 49.18 | 95 | 35 | 96.5 |
| A7 | 50.49 | 395 | 122 | 424.3 |
| A8 | 52.88 | 145 | 37 | 171.5 |
| A9 | 48.99 | 386 | 132 | 388.3 |
| A10 | 50.59 | 424 | 118 | 458.5 |
>TRINITY_DN109337_c0_g1_i11 from sample A2 / Example spliced isoformAGAAAATTTGCGCAGATGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTATTAGTGAGTGCATA
ATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCTTGAAGGAAATAACAAGA
CCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGTATCCAACCTTTATTGAT
GCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAGGCAGAAGT
TGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGCAGCAGAAC
TGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAAGAGCTATG
GCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCGGAGTGGTCTCATGGGATGGTGATGG
GGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTATCTTGCCTACAGATGATTACATGGTTGGAAGGGTTCCTCCACCTCATCTGTCACCTTTTGTTGACGAGG
AAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCCCAAAACATACTGGCAGATGCTATTGCCTACCGAAATGAAGCCAATGCAGCAGCAGAAAGGGGTACAGAGGAAATGGCGATTGAAAGG
TCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCCGAGCACAGGTTCTGGACCAGAGAAGGATGCAGATGACTTGAAGGCTATGTCACAGATTATGATGTCCCGCAAAAAGAGAAAATTGTA
TGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAATCAAGAAAGGCAGGCAAGACAGAGTGAGAAACTTCTTCCAGGTTATTATTATGGCTATGTGGAAAATGTCCAAATGTTGGAGAGATTTGTGTGGCACTGTATGTTGTATAACATATTCTTTTATTACAGC
CAGTATTTTAAGAGAATTCCATGCAAGATTAAGAAAGTGCGAATGGTCGAATTAGAAGTGTTTGTGGAAATTTTGAAGGGCATGACTTTGGAACTGTGATAGTTTATTTTGTCACATACCCGTATAGGTGATCAAAGCTCTTGGTGCTTAGTGATGCCCACGTGATCCTATGAGGGCCCACATGCCATGTTAATTTAAAT
GTTGCATTTTTAAAGCAAATTTGGGGCTGACTTGTGTAATTTTCTCCCTTAATTTTGAAAATAAGTGATTTTTTTAATGAGATTTACGAAGGGGTAG
>TRINITY_DN109337_c0_g1_i7 from sample A2 / Example unspliced isoform:AGAAAATTTGCGCAGATGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGgtagctcccatctccac
ccgacgaggtaggtcttgggcactggtatgcgtaccggagcaggcatacataacaattcttaaccactgtcgcaaaactgtttgcagGTATTAGTGAGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGC
TCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCTTGAAGGAAATAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAG
CTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGTATCCAACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCAT
AGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAGGCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATT
TTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGCAGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGG
AGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAAGAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACT
CTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTAAGTGTTTTGTTTCCATATTCTTTGAATTTTAAAATAACTGCTTTTATAATCTGGAAAAAGTAGATGTTATGCAGCAGCAACAATTTCAATAAAGGCTTGTCTTAGGGACAGTGTTATCTCATCATTGATCATACTTCAGTTGAGGATGAAACATATAATCA
CAGCCTGTAACCATAGTCCAAGGAAATGAACTGAGGAGCTGATGAATAACTGTTTCCCATTTCTTATCACCCAAACCATCGTGAAATCCTGGTAATTGATTTTCTGAAGTGCAGGAATCTCGGTGATAAGCATGCCAAGTTCTGTTTGCTGTTATAAAGTAATGTAATGTTCCTTAAATTGCAATTTTTGACAATATTAC
CATAATCAAGTTATATTTATTTATCTGATTTAACATAATTTAAATAAAGAAGAAGCATAACTTTAGAAACTATGTAAAATAATTTCCTTGTACCCTATATAGCACCCTTTACTAAATCAACATTGCTTCGCATAGGTACATGTTGATTGTTTTAGTGGAATCTGACTGTACATGCCTTGCACAAATCCAATG
Intron 2 GTAGGTCTTG ... CTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.55 | 232.8 | 82 | 254.3 |
| A2 | 51.04 | 345.6 | 144 | 368.2 |
| A3 | 50.9 | 327 | 119 | 348.4 |
| A4 | 52.79 | 259.1 | 90.5 | 296.8 |
| A5 | 53 | 161.8 | 65 | 185.9 |
| A6 | 49.16 | 103 | 42 | 102.1 |
| A7 | 51.48 | 412.2 | 151 | 449.7 |
| A8 | 53.14 | 155.8 | 48 | 181.6 |
| A9 | 49.74 | 405 | 155 | 410.7 |
| A10 | 50.83 | 457 | 139 | 486.1 |
>TRINITY_DN132928_c5_g1_i7 from sample A1 / Example spliced isoformGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTAGCTCCCATCTCCACCCGACGAGGTATTAGTG
AGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCTTGAAGGAAA
TAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGTATCCAACCT
TTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAG
GCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGC
AGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAA
GAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCGGAGTGGTCTCATGGGAT
GGTGATGGGGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTATCTTGCCTACAGATGATTACATGGTTGGAAGGGTTCCTCCACCTCATCTGTCACCTTTTGT
TGACGAGGAAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCCCAAAACATACTGGCAGATGCTATTGCCTACCGAAATGAAGCCAATGCAGCAGCAGAAAGGGGTACAGAGGAAATGGCGA
TTGAAAGGTCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCCGAGCACAGGTTCTGGACCAGAGAAGGATGCAGATGACTTGAAGGCTATGTCACAGATTATGATGTCCCGCAAAAAGAGA
AAATTGTATGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAATCAAGAAAGGCAGGCAAGACAGAGTGAGAAACTTCTTCCAGGTTATTATTATGGCTATGTGGAAAATGTCCAAATGTTGGAGAGATTTGTGTGGCACTGTATGTTGTATAACATATTCTTTT
ATTACAGCCAGTATTTTAAGAGAATTCCATGCAAGATTAAGAAAGTGCGAATGGTCGAATTAGAAGTGTTTGTGGAAATTTTGAAGGGCATGACTTTGGAACTGTGATAGTTTATTTTGTCACATACCCGTATAGGTGATCAAAGCTCTTGGTGCTTAGTGATGCCCACGTGATCCTATGAGGGCCCACATGCCATGTTA
ATTTAAATGTTGCATTTTTAAAGCAAATTTGGGGCTGACTTGTGTAATTTTCTCCCTTAATTTTGAAAATAAGTGATTTTTTTAATGAGATTTACGAAGGGGTAGTGACTGAAAGTATATATTTATGAAAGTAACTTCTGGATTACTGATTTTATATAGGGAGTCGTAAAAAGGGGCTAAGATGTCAC
>TRINITY_DN132928_c5_g1_i8 from sample A1 / Example unspliced isoform:GCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTAGCTCTCATCTCCACCCGACGAGgtaggtctt
gggcactggtatgcgtaccggagcaggcatacataacaattcttaaccactgtcgcaaaactgtttgcagGTATTAGTGAGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGC
TCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCTTGAAGGAAATAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAAC
AGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGTATCCAACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAG
TCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAGGCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAG
GATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGCAGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAG
CAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAAGAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAA
ATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCGGAGTGGTCTCATGGGATGGTGATGGGGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACT
GCATGAACTCTCGCCTTATCTTGCCTACAGATGATTACATGGTTGGAAGGGTTCCTCCACCTCATCTGTCACCTTTTGTTGACGAGGAAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCC
CAAAACATACTGGCAGATGCTATTGCCTACCGAAATGAAGCCAATGCAGCAGCAGAAAGGGGTACAGAGGAAATGGCGATTGAAAGGTCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCC
GAGCACAGGTTCTGGACCAGAGAAGGATGCAGATGACTTGAAGGCTATGTCACAGATTATGATGTCCCGCAAAAAGAGAAAATTGTATGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAATCAAGAAAGGCAGGCAAGACAGAGTGAGAAACTTCTTCCAGGT
TATTATTATGGCTATGTGGAAAATGTCCAAATGTTGGAGAGATTTGTGTGGCACTGTATGTTGTATAACATATTCTTTTATTACAGCCAGTATTTTAAGAGAATTCCATGCAAGATTAAGAAAGTGCGAATGGTCGAATTAGAAGTGTTTGTGGAAATTTTGAAGGGCATGACTTTGGAACTGTGATAGTTTATTTTGTC
ACATACCCGTATAGGTGATCAAAGCTCTTGGTGCTTAGTGATGCCCACGTGATCCTATGAGGGCCCACATGCCATGTTAATTTAAATGTTGCATTTTTAAAGCAAATTTGGGGCTGACTTGTGTAATTTTCTCCCTTAATTTTGAAAATAAGTGATTTTTTTAATGAGATTTACGAAGGGGTAGTGACTGAAAGTATATA
TTTATGAAAGTAACTTCTGGATTACTGATTTTATATAGGGAGTCGTAAAAAGGGGCTAAGATGTCAC
Intron 3 GTAGCTCTCA ... ACCCGACGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.39 | 213 | 135.8 | 232.8 |
| A2 | 46.59 | 324 | 219.6 | 345.6 |
| A3 | 46.58 | 312 | 217 | 327 |
| A4 | 46.33 | 251 | 174.2 | 259.2 |
| A5 | 47.91 | 152 | 117.8 | 161.8 |
| A6 | 47.66 | 95 | 70 | 103 |
| A7 | 46.16 | 395 | 265.2 | 412.2 |
| A8 | 47.73 | 145 | 109 | 155.8 |
| A9 | 45.9 | 386 | 250 | 405 |
| A10 | 47.85 | 424 | 321 | 457 |
>TRINITY_DN109337_c0_g1_i11 from sample A2 / Example spliced isoformAGAAAATTTGCGCAGATGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTATTAGTGAGTGCATA
ATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCTTGAAGGAAATAACAAGA
CCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGTATCCAACCTTTATTGAT
GCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAGGCAGAAGT
TGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGCAGCAGAAC
TGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAAGAGCTATG
GCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCGGAGTGGTCTCATGGGATGGTGATGG
GGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTATCTTGCCTACAGATGATTACATGGTTGGAAGGGTTCCTCCACCTCATCTGTCACCTTTTGTTGACGAGG
AAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCCCAAAACATACTGGCAGATGCTATTGCCTACCGAAATGAAGCCAATGCAGCAGCAGAAAGGGGTACAGAGGAAATGGCGATTGAAAGG
TCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCCGAGCACAGGTTCTGGACCAGAGAAGGATGCAGATGACTTGAAGGCTATGTCACAGATTATGATGTCCCGCAAAAAGAGAAAATTGTA
TGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAATCAAGAAAGGCAGGCAAGACAGAGTGAGAAACTTCTTCCAGGTTATTATTATGGCTATGTGGAAAATGTCCAAATGTTGGAGAGATTTGTGTGGCACTGTATGTTGTATAACATATTCTTTTATTACAGC
CAGTATTTTAAGAGAATTCCATGCAAGATTAAGAAAGTGCGAATGGTCGAATTAGAAGTGTTTGTGGAAATTTTGAAGGGCATGACTTTGGAACTGTGATAGTTTATTTTGTCACATACCCGTATAGGTGATCAAAGCTCTTGGTGCTTAGTGATGCCCACGTGATCCTATGAGGGCCCACATGCCATGTTAATTTAAAT
GTTGCATTTTTAAAGCAAATTTGGGGCTGACTTGTGTAATTTTCTCCCTTAATTTTGAAAATAAGTGATTTTTTTAATGAGATTTACGAAGGGGTAG
>TRINITY_DN109337_c0_g1_i8 from sample A2 / Example unspliced isoform:AGAAAATTTGCGCAGATGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGgtagctcccatctccac
ccgacgagGTATTAGTGAGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAG
AAAAAGCTTGAAGGAAATAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAG
GCAGAGGTATCCAACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGA
AAGGAATCTACTACCAGGCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCA
AGATTGGAGGCAGCAGCAGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTC
GTCAATGGACAAAGAAAGAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTAAGTGTTTTGTTTCCATATTCTTTGAATTTTAAAATAACTG
CTTTTATAATCTGGAAAAAGTAGATGTTATGCAGCAGCAACAATTTCAATAAAGGCTTGTCTTAGGGACAGTGTTATCTCATCATTGATCATACTTCAGTTGAGGATGAAACATATAATCACAGCCTGTAACCATAGTCCAAGGAAATGAACTGAGGAGCTGATGAATAACTGTTTCCCATTTCTTATCACCCAAACCAT
CGTGAAATCCTGGTAATTGATTTTCTGAAGTGCAGGAATCTCGGTGATAAGCATGCCAAGTTCTGTTTGCTGTTATAAAGTAATGTAATGTTCCTTAAATTGCAATTTTTGACAATATTACCATAATCAAGTTATATTTATTTATCTGATTTAACATAATTTAAATAAAGAAGAAGCATAACTTTAGAAACTATGTAAAA
TAATTTCCTTGTACCCTATATAGCACCCTTTACTAAATCAACATTGCTTCGCATAGGTACATGTTGATTGTTTTAGTGGAATCTGACTGTACATGCCTTGCACAAATCCAATG
Intron 4 GTCAGCAAGC ... AATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.98 | 308 | 2 | 63 |
| A2 | 13.87 | 236 | 7 | 38 |
| A3 | 16.15 | 244 | 1 | 47 |
| A4 | 16.83 | 257 | 9 | 52 |
| A5 | 14.93 | 114 | 2 | 20 |
| A6 | 11.65 | 91 | 0 | 12 |
| A7 | 12.44 | 352 | 4 | 50 |
| A8 | 20.39 | 164 | 0 | 42 |
| A9 | 14.88 | 349 | 2 | 61 |
| A10 | 17.63 | 369 | 3 | 79 |
>TRINITY_DN95898_c0_g2_i8 from sample A4 / Example spliced isoformTTCCTATCAAGAAAATTTGCGCAGATGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTAGCTCC
CATCTCCACCCGACGAGGTATTAGTGAGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGA
GAGCCAAAGAAAAAGCTTGAAGGAAATAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCA
TATTCTGAGGCAGAGGTATCCAACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTG
TGTCTGTGAAAGGAATCTACTACCAGGCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATA
CTTGATCCAAGATTGGAGGCAGCAGCAGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCA
TCGGCTTTCGTCAATGGACAAAGAAAGAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAG
CCTTTGGCGGAGTGGTCTCATGGGATGGTGATGGGGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTATCTTGCCTACAGATGATTACATGGTTGGAAGGGTT
CCTCCACCTCATCTGTCACCTTTTGTTGACGAGGAAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCCCAAAACATACTGGCAGATGCTATTGCCTACCGAAATGAAGCCAATGCAGCAGC
AGAAAGGGGTACAGAGGAAATGGCGATTGAAAGGTCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCCGAGCACAGGTTCTGGACCAGAGAAGGATGCAGATGACTTGAAGGCTATGTCAC
AGATTATGATGTCCCGCAAAAAGAGAAAATTGTATGAAGCCATGCAGGTATTGTGTGTATTCTTGGCTTCTTATGTAAATAGGTGTTATGATATTTGATCAGCTACAGAAAAACTGTGACAAATTTGTTTTTTAGAAGAGATTTTTAACTAATAAAACCTTGCATAAGAAATGAGAAATAAAACCTTCTGAGGTCGGGAT
GTCAAACTAGAGTCTTCAATCTTCTCTGACTGTTGCAACTTATCCCTGAACTGTTGATTGAGGTTAAAATTTTGTTGTATATTTATTCTTGGAGTCGAGCAGAGCCTCCTCTTTGTTGTTTTTTCCCATTTAGATTTCTAGGGGAAATATATGTGCTTTGTGGTG
>TRINITY_DN95898_c0_g2_i7 from sample A4 / Example unspliced isoform:TAGATCAAATATTAAATTTAATTGCTAAGTTTTCTTTTGGGGCACTTGAATTGCTATTTATTTTGATAAGCTGAAGCTAAAACTATGAATTACTGCAAAGTGGAAACATTTTTCTCTACAGTATGCACTTTTATGAAGATTTTTTTCAACTTTATAGGTCACATTTTGTCCTGCAGACAGGCAACCTCTGTAAAATAAAA
ATTGATGCCACTGAAAACTGAATTTTGTTGACAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAGgtcagcaagctcgagagtttacatgttcaagctagtagacttgtttttgagtatgtacattttgttttctttgtgcttgtc
attaaaataaggtccccttttttctcaaagtgtttttatacatggtataattttgcagGCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTT
ATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGCAGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCA
GAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAAGAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGT
TCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCGGAGTGGTCTCATGGGATGGTGATGGGGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTATCT
TGCCTACAGATGATTACATGGTTGGAAGGGTTCCTCCACCTCATCTGTCACCTTTTGTTGACGAGGAAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCCCAAAACATACTGGCAGATGCT
ATTGCCTACCGAAATGAAGCCAATGCAGCAGCAGAAAGGGGTACAGAGGAAATGGCGATTGAAAGGTCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCCGAGCACAGGTTCTGGACCAGA
GAAGGATGCAGATGACTTGAAGGCTATGTCACAGATTATGATGTCCCGCAAAAAGAGAAAATTGTATGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAATCAAGAAAGGCAGGCAAGACAGAGTGAGAAACTTCTTCCAGGTTATTATTATGGCTATGTGGAA
AATGTCCAAATGTTGGAGAGATTTGTGTGGCACTGTATGTTGTATAACATATTCTTTTATTACAGCCAGTATTTTAAGAGAATTCCATGCAAGATTAAGAAAGTGCGAATGGTCGAATTAGAAGTGTTTGTGGAAATTTTGAAGGGCATGACTTTGGAACTGTGATAGTTTATTTTGTCACATACCCGTATAGGTGATCA
AAGCTCTTGGTGCTTAGTGATGCCCACGTGATCCTATGAGGGCCCACATGCCATGTTAATTTAAATGTTGCATTTTTAAAGCAAATTTGGGGCTGACTTGTGTAATTTTCTCCCTTAATTTTGAAAATAAGTGATTTTTTTAATGAGATTTACGAAGGGGTA
Intron 5 GTAAATGAGC ... CTACTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.63 | 355.2 | 30 | 82 |
| A2 | 10.76 | 427.1 | 49 | 54 |
| A3 | 10.11 | 449.2 | 43 | 58 |
| A4 | 14.25 | 355.2 | 50 | 68 |
| A5 | 12.9 | 195.9 | 34 | 24 |
| A6 | 8.78 | 125 | 12 | 12 |
| A7 | 10.99 | 587.4 | 57 | 88 |
| A8 | 13.26 | 209.7 | 31 | 33 |
| A9 | 10.88 | 516.6 | 48 | 78 |
| A10 | 10.18 | 582.7 | 73 | 59 |
>TRINITY_DN109337_c0_g1_i3 from sample A2 / Example spliced isoformAGAAAATTTGCGCAGATGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTAGCTCCCATCTCCAC
CCGACGAGGTATTAGTGAGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAG
AAAAAGCTTGAAGGAAATAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAG
GCAGAGGTATCCAACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGA
AAGGAATCTACTACCAGGCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCA
AGATTGGAGGCAGCAGCAGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTC
GTCAATGGACAAAGAAAGAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCG
GAGTGGTCTCATGGGATGGTGATGGGGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTATCTTGCCTACAGATGATTACATGGTTGGAAGGGTTCCTCCACCT
CATCTGTCACCTTTTGTTGACGAGGAAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCCCAAAACATACTGGCAGATGCTATTGCCTACCGAAATGAAGCCAATGCAGCAGCAGAAAGGGG
TACAGAGGAAATGGCGATTGAAAGGTCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCCGAGCACAGGTTCTGGACCAGAGAAGGATGCAGATGACTTGAAGGCTATGTCACAGATTATGA
TGTCCCGCAAAAAGAGAAAATTGTATGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAATCAAGAAAGGCAGGCAAGACAGAGTGAGAAACTTCTTCCAGGTTATTATTATGGCTATGTGGAAAATGTCCAAATGTTGGAGAGATTTGTGTGGCACTGTATGTT
GTATAACATATTCTTTTATTACAGCCAGTATTTTAAGAGAATTCCATGCAAGATTAAGAAAGTGCGAATGGTCGAATTAGAAGTGTTTGTGGAAATTTTGAAGGGCATGACTTTGGAACTGTGATAGTTTATTTTGTCACATACCCGTATAGGTGATCAAAGCTCTTGGTGCTTAGTGATGCCCACGTGATCCTATGAGG
GCCCACATGCCATGTTAATTTAAATGTTGCATTTTTAAAGCAAATTTGGGGCTGACTTGTGTAATTTTCTCCCTTAATTTTGAAAATAAGTGATTTTTTTAATGAGATTTACGAAGGGGTAG
>TRINITY_DN109337_c0_g1_i14 from sample A2 / Example unspliced isoform:AGAAAATTTGCGCAGATGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTAGCTCCCATCTCCAC
CCGACGAGGTAGGTCTTGGGCACTGGTATGCGTACCGGAGCAGGCATACATAACAATTCTTAACCACTGTCGCAAAACTGTTTGCAGGTATTAGTGAGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGgtaaatgagcttaatttatcttccagtgggactgggctttaggattcctc
tgatttatttataaatattacctgaaggcacttcatttctgatttgatttgagctacttacagGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCT
TGAAGGAAATAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGT
ATCCAACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAG
Intron 6 GTTTTTGGGA ... CGGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.01 | 262 | 12.3 | 65.5 |
| A2 | 19.07 | 157 | 20.3 | 37 |
| A3 | 16.1 | 201 | 13.7 | 38.6 |
| A4 | 13.39 | 158 | 13.7 | 24.4 |
| A5 | 13.04 | 80 | 7.3 | 12 |
| A6 | 16.98 | 132 | 4.7 | 27 |
| A7 | 17.06 | 485 | 24.2 | 99.8 |
| A8 | 14.86 | 378 | 15.3 | 66 |
| A9 | 13.44 | 470 | 36.3 | 73 |
| A10 | 15.16 | 459 | 34.4 | 82 |
>TRINITY_DN132928_c5_g1_i7 from sample A1 / Example spliced isoformGCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTAGCTCCCATCTCCACCCGACGAGGTATTAGTG
AGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGCTCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCTTGAAGGAAA
TAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAACAGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGTATCCAACCT
TTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAGTCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAG
GCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAGGATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGC
AGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAGCAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAA
GAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAAATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCGGAGTGGTCTCATGGGAT
GGTGATGGGGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTATCTTGCCTACAGATGATTACATGGTTGGAAGGGTTCCTCCACCTCATCTGTCACCTTTTGT
TGACGAGGAAGCAGAAGGCTACATGCCAGAGTATGCTAAGACTATTAAGCGCTTGCAAGCAGCAGCAAAGCAACAAGTTTTACCTATGGCAGGGATGGAAGATCAGGTTATCAATGATTCCCAAAACATACTGGCAGATGCTATTGCCTACCGAAATGAAGCCAATGCAGCAGCAGAAAGGGGTACAGAGGAAATGGCGA
TTGAAAGGTCATATCAAGAAGAGTTGACAAAGGAACTTGAAGGCATTCCATATTCTGCATCGTTGTCAGGCAAGGCAATACAGGAATTGCTTGAAGATTCTGAAGATGAAGAAAAGGCTCCGAGCACAGGTTCTGGACCAGAGAAGGATGCAGATGACTTGAAGGCTATGTCACAGATTATGATGTCCCGCAAAAAGAGA
AAATTGTATGAAGCCATGCAGATTGGCAAATCGAAAAAGAGAGCAAATGTTGAACTCCTCGAAGAAAGGAAAAGAAAATCAAGAAAGGCAGGCAAGACAGAGTGAGAAACTTCTTCCAGGTTATTATTATGGCTATGTGGAAAATGTCCAAATGTTGGAGAGATTTGTGTGGCACTGTATGTTGTATAACATATTCTTTT
ATTACAGCCAGTATTTTAAGAGAATTCCATGCAAGATTAAGAAAGTGCGAATGGTCGAATTAGAAGTGTTTGTGGAAATTTTGAAGGGCATGACTTTGGAACTGTGATAGTTTATTTTGTCACATACCCGTATAGGTGATCAAAGCTCTTGGTGCTTAGTGATGCCCACGTGATCCTATGAGGGCCCACATGCCATGTTA
ATTTAAATGTTGCATTTTTAAAGCAAATTTGGGGCTGACTTGTGTAATTTTCTCCCTTAATTTTGAAAATAAGTGATTTTTTTAATGAGATTTACGAAGGGGTAGTGACTGAAAGTATATATTTATGAAAGTAACTTCTGGATTACTGATTTTATATAGGGAGTCGTAAAAAGGGGCTAAGATGTCAC
>TRINITY_DN132928_c5_g1_i6 from sample A1 / Example unspliced isoform:GCCAAAAACAAATTTAGGGTTTGTATCTAAGGGTCGAGCATAAACCCTGGAGTCCTCTTTTAGCTTGGCCGTAAAAACTAATGTAAAGTTTGGATTTTAAATAGTGCCCTCTTATAAGAGCTTCAAAGCTTCTCAAGGTCCGTGTGTAGAGCGAACGAGGGCGAAGGTAGCTCTCATCTCCACCCGACGAGGTAGGTCTT
GGGCACTGGTATGCGTACCGGAGCAGGCATACATAACAATTCTTAACCACTGTCGCAAAACTGTTTGCAGGTATTAGTGAGTGCATAATCCTTTGCAGATTCAGCAAGAATGCCAAAGCATTATCGCCCACCGGGTAAGAGGAAAGAAGGAAATGCTGCCAAATACATCACAAGGAACAAGGCTCTGAACCTTCTTCAGC
TCAAATTGCCAGAGTTTCGGCGACTGTGCATCTTGAAGGGGATTTTTCCCCGAGAGCCAAAGAAAAAGCTTGAAGGAAATAACAAGACCTACTATCATCTCAAAGATATTTCGTTTCTTGCGCATGAACCTTTGCTCGATAAAAGCAGACAGATTAAGGCTTTTAACAAGAAGATAAAAAAAGCTTTGGCAAAGAAGAAC
AGGAATTTGGCTTCTCGCTTGGAGAATAATAGGCCTTCATATACTCTTGACCATATTCTGAGGCAGAGGTATCCAACCTTTATTGATGCTCTTCGTGACCTGGATGATGCTCTCACAATGATGCATCTTTTTGCAGCTTTGCCTGCAGACAAGACACATGAGATTCCTGCCGAGCGTGTTCATAGCTGCCGAAGATTAAG
TCTGGAGTGGCAGGCCTACATTTCTAGAACTCATTCTTTACGTAAGACATTTGTGTCTGTGAAAGGAATCTACTACCAGGCAGAAGTTGATGGTCAAAACATTACGTGGCTTACACCACACGTTCTGCAACAAGTTATTCCTGGGGATGTTGATTTTCGTGTTATGCTGACATTCTTAGAATTTTATGAGACTCTTATAG
GATTTGTGAATTTCAAACTTTATTATTCTATATCTTTAAAGTATCCACCAATACTTGATCCAAGATTGGAGGCAGCAGCAGCAGAACTGTATGCCATTGTCAAGGACCTTGCTTCAAATACTGTGAGCTCCCTTCAGGAGGATGCTCCTGAACCAAGTCAGGAGATTGTTGCTAGTGAATCGGAGCTAATTAATCCAGAG
CAGAAAGAGAAAAGATTGGCAGAGTCGCAGGCAAGGTTGGCATTACTTCAGCATCGGCTTTCGTCAATGGACAAAGAAAGAGCTATGGCTAATGATCTGCAACAAGAAGACACAGCAATTCAAGATAAAGAGCAAGATGTTGATGAAGAAGATGAAGATGAAGAAAAAAAAGTCTGCAGGACTCTCTTCAAGGATTTGAA
ATTCTTCTTGGGACGGGAGGTTCCAAGAGAGTCGTTACTTTTTGTTATTCAAGCCTTTGGCGGAGTGGTCTCATGGGATGGTGATGGGGCCCCTTTCAAAGAGACTGATGAAGGCATTACCCACCAGgtttttgggaactttagcaatctatcccgtagttagagtgatatttcaatgtgtaatatcatttagccgcaaa
ttagctagagttttctatgatcaggaatgcctgttctttccatatgtgcaatgttttgaatgtgaccctgtttgttgtattacctgatatattgtatgcggtgtgcagATAGTGGATCGCCCAACCCAGAGCCATAAATTTTTATCTAGGGACTATGTACAACCTCAATGGGTTTATGACTGCATGAACTCTCGCCTTAT
CTTGCCTACAGATGATTACATGGTTGGAAGGTACTTTTAATATTAATATTTGTGTGGAGATTAAGTCTGATTCTTTTCTACTTGAAACTGGGATGAAGGCATACTTCTAAATTGAACTGT