sp|Q8GVE8|CAPP4_ARATH ----> Phosphoenolpyruvate carboxylase 4

Intron 1 GCACTTCTCC ... TCAAGCAGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75	3	9	9
A2	40	6	6	2
A3	50	2	2	2
A4	45.45	3	4	1
A5	42.86	2	2	1
A6	62.5	3	5	5
A7	56.52	5	7	6
A8	37.5	10	10	2
A9	57.14	6	10	6
A10	28.57	15	11	1

>TRINITY_DN47257_c1_g2_i1 from sample A10 / Example spliced isoform

GACATAAAGCCCTATCGAGATCAGAGGGTTAGCAGGGTTAGTACATGAATCATCACAGGGTTAGCAGGGTTCGTACATGAATTAAAACAAGAAGTGAACGATACATACCGTTATCTATTCTGTAGAAGGCAGCTCAATCGAGAGAAATCATGGATCCCACCATGGATCTCCATTTAGCAGAAGGCAGCTCAACCTCCAGC
AGAGGTCATTTTAGAACAGTCGCCTCCATGCAGCAGAGTCCTTTTAGAACAGTCGCCTCTACTGCAGTGCACTCCAGTAGAGACAAACTCAGGACTCAGACAGACACAGACACAGAGGCACTTCTCCCACTTCAGCTTCCTTCAACGGCCTTCAACAGATAGGAATAGGTTGCAGATGAGACAAATGGAGTCTCCCTCCT
TCAACGGTCTTCAACGAGAAAGGAGTATCAAACATCATAACTCTTTCCCGCGGACAGAACAGGCACTCTTTTTTCTCTTTTGCACAACCCTGTATAGGTGACGCAAATTGCTTTTCCATTCCTCGAATCACTGTTTTTTTCTCCCTGAACTAACAGACCTCGCTTTTCGGTCCTCGA

>TRINITY_DN47257_c1_g2_i5 from sample A10 / Example unspliced isoform:

GACATAAAGCCCTATCGAGATCAGAGGGTTAGCAGGGTTAGTACATGAATCATCACAGGGTTAGCAGGGTTCGTACATGAATTAAAACAAGAAGTGAACGATACATACCGTTATCTATTCTGTAGAAGGCAGCTCAATCGAGAGAAATCATGGATCCCACCATGGATCTCCATTTAGCAGAAGGCAGCTCAACCTCCAGC
AGAGGTCATTTTAGAACAGTCGCCTCCATGCAGCAGAGTCCTTTTAGAACAGTCGCCTCTACTGCAGTGCACTCCAGTAGAGACAAACTCAGGACTCAGACAGACACAGACACAGAGgcacttctcccacttcaagcagagGCACTTCTCCCACTTCAGCTTCCTTCAACGGCCTTCA

Intron 2 GTGAGTGTCA ... CTTTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	83.78	3	11	20
A2	87.1	2	19	8
A3	63.64	6	12	9
A4	66.67	1	2	2
A5	57.14	3	1	7
A6	59.09	9	14	12
A7	38.1	13	8	8
A8	48.39	16	12	18
A9	46.67	4	2	5
A10	60	4	6	6

>TRINITY_DN48251_c1_g2_i6 from sample A7 / Example spliced isoform

GTGAATTCAGGGACGGAAAAGCGAAGTCTGTTAGTTAAGGGAGAGAAAAGCAGTGATTTGAGGAATGGAAAAGCAATTTTCGTCCCCTGCAAAAGCAGTCAGTTTACAGTCCGTTTAGTGAAGGTCCAAGGAGACTCAATTTGTCAAATCTGCAACCCAGCCGGCTGCCCATTCCTATCCGTTTAGTGAAGGAAACTCAA
TTTGTCTCATCTGCAACCTATTCCTATCCGTTGAAGGCGCGTTGAAGGGAGCGGAAGTGGGAGAAGTGCCTCTGTGTCTGTGTCGGTGTATGAGTCATGAGTTTGTCTGTGTATGAGGCGACTGTTCTAAAAGGACCTCTGCTAGAGATTGAACTGCCTTCTGCGCAATGGAGATCCATGGCTTCTCTCGATTGAGCTGC
CTTCTACATAATAGATAACGAGGAGAGAGGTTACTTCTTTATGACAGATAGATGAACTGAGACATCATAATCCCACACGTATGGATGAAGCTCGCTCGGTTTGGGTTGCATATTGTGGAATAGTCCCTTTGAAAAGTTGTGTCACTATCTACATAGAGTTAGTGCTTCCTTAAAAAAGGTTGATTTCCTCACCATTGAAC
AAATTAGATTGATTCTTTGGATGGTAGATATCAATACTTAGTTTTCATGCCACTTGGTTTTGAGATATGACATTCTAAAATAATTAAATTACAATAATGATGTCGTTTTATAATTTTTCAGCATATTGGTAGGCCACTTTGTTTGACACGCACTCCTGTCATATTTGGTTCATGTATGGGAGGTTATAGATATGGTAACC
CAAATGTAACTACTAAGGTACTTATGACTTGAAAAACCCATAATTAATCAATAAAAACTGCAGAAC

>TRINITY_DN48251_c1_g2_i3 from sample A7 / Example unspliced isoform:

GTGAATTCAGGGACGGAAAAGCGAAGTCTGTTAGTTAAGGGAGAGAAAAGCAGTGATTTGAGGAATGGAAAAGCAATTTTCGTCCCCTGCAAAAGCAGTCAGTTTACAGTCCGTTTAGTGAAGGTCCAAGGAGACTCAATTTGTCAAATCTGCAACCCAGCCGGCTGCCCATTCCTATCCGTTTAGTGAAGGAAACTCAA
TTTGTCTCATCTGCAACCTATTCCTATCCGTTGAAGGCGCGTTGAAGGGAGCGGAAGTGGGAGAAGTGCCTCTGTGTCTGTGTCGGTGTATGAGTCATGAGTTTGTCTGTGTATGAGGCGACTGTTCTAAAAGGACCTCTGCTAGAGATTGAACTGCCTTCTGCGCAATGGAGATCCATGGCTTCTCTCGATTGAGCTGC
CTTCTACATAATAGATAACGAGGAGAGAGGTTACTTCTTTATGACAGATAGATGAACTGAGACATCATAATCCCACACGTATGGATGAAGCTCGCTCGGTTTGgtgagtgtcaaggagactgtaacatagtttgttatttcatgaatattaatcatcttacctttttgcagGGTTGCATATTGTGGAATAGTCCCTTTGA
AAAGTTGTGTCACTATCTACATAGAGTTAGTGCTTCCTTAAAAAAGGTTGATTTCCTCACCATTGAACAAATTAGATTGATTCTTTGGATGGTAGATATCAATACTTAGTTTTCATGCCACTTGGTTTTGAGATATGACATTCTAAAATAATTAAATTACAATAATGATGTCGTTTTATAATTTTTCAGCATATTGGTAG
GCCACTTTGTTTGACACGCACTCCTGTCATATTTGGTTCATGTATGGGAGGTTATAGATATGGTAACCCAAATGTAACTACTAAGGTACTTATGACTTGAAAAACCCATAATTAATCAATAAAAACTGCAGAAC