sp|Q93VC9|CATB2_ARATH ----> Cathepsin B-like protease 2
Intron 1 GTAGGACTCC ... GCCATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.31 | 127 | 3 | 3 |
| A2 | 5.1 | 93 | 5 | 2 |
| A3 | 2.3 | 127.3 | 3 | 2 |
| A4 | 4.11 | 116.7 | 5 | 0 |
| A5 | 1.39 | 71 | 1 | 0 |
| A6 | 0.52 | 384.7 | 2 | 0 |
| A7 | 0.88 | 451 | 4 | 2 |
| A8 | 2.82 | 310 | 9 | 1 |
| A9 | 0.97 | 410 | 4 | 1 |
| A10 | 0.7 | 427.7 | 3 | 1 |
>TRINITY_DN43347_c0_g2_i6 from sample A8 / Example spliced isoformTGAAGGTGAAGAAAACTTGTTATTGGGCCCTCTGGAAACAGTCACGTGTCCGTCACCGACCGGTTGGGAACCGGCCGCGTTGTTGTAGCCCAGGAGCTTCAAAGGGCAAAGGGCCAAAGAGTGCTCTTATCTACCAAGAGGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGT
TTAGCGGTCCTGGTAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCT
TCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATA
AAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAG
TGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTA
CTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAG
CTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCTAATTTATTTGTGACATTTGTATTTG
TTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAG
>TRINITY_DN43347_c0_g2_i1 from sample A8 / Example unspliced isoform:TGAAGGTGAAGAAAACTTGTTATTGGGCCCTCTGGAAACAGTCACGTGTCCGTCACCGACCGGTTGGGAACCGGCCGCGTTGTTGTAGCCCAGGAGCTTCAAAGGGCAAAGGGCCAAAGAGTGCTCTTATCTACCAAGAGGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGT
TTAGCGGTCCTGGTAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCT
TCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGGTCAGTAGCCTTCGTTGTAATCTCTTCAATAGACTGCAATGTGGGTCTTTAGGAATCTCTTTAGAATCATAGTAA
ATACTTATTGCTACTTTAAATTTATCATAAATGGAGATGATTTAGGAATCTAACTTGCTTTTTTTCCATATCGTTGTGGAATGTGCAATGTCGGCCATCGATATGATGTTGTTCCTGATGAGAGCAGATCAGGTAAATGCAGGCTATTTGCTTTTACTCGTTGTGCATAGTATTTCTTTGTTGTAATCATCATTTTGAAA
TCCGCCGCCTACTGTAGACCGTGGATAACTAAGTGGTGTTATCATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGgtaggactccataacatcaattatgttttggctaggtggtcttcttatcttttattgatttccggacgtatattctg
atttcatttttcttcgttatgccatgtcagAACGTTACTCTCTCCGAAAATG
Intron 2 GTATCTTATT ... TTACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.69 | 119.3 | 57 | 2 |
| A2 | 30.91 | 125.7 | 51 | 2 |
| A3 | 30.85 | 148.3 | 60 | 5 |
| A4 | 34.7 | 104.3 | 50 | 3 |
| A5 | 30.77 | 62.7 | 24 | 0 |
| A6 | 30.43 | 372.3 | 152 | 4 |
| A7 | 29.66 | 462.3 | 175 | 1 |
| A8 | 26.74 | 273 | 91 | 7 |
| A9 | 31.69 | 458.3 | 192 | 2 |
| A10 | 29.28 | 439.3 | 166 | 0 |
>TRINITY_DN102776_c0_g1_i8 from sample A4 / Example spliced isoformAATTATTAAAGCTATCTCTATCTCTATCTCTACCTATACCGACTATGAAACCTCATATCATAACTTTTTATTATTTTTTGATTGCAAAAATAATTTCAAACGCCGTTATAAAGTTTTATTCTTAACCAATCCAATTAAAATTTTAGAGAAAAATGGTGGAACAGAACTTGCCAAGTTATCGTACGTGTACGGTTACGAAA
AAATCTAACAAAATCTTCAGTCCACTTACGGCGCCTTGAAATCTCGTCCACTCACCGGGTTGCATGTAGACAGCTGGGCGAGTCTGATCCTGAATTTGAATTCGGATAACAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCGTATGTAGGCTTCTAAAATG
AATAAGCGTAAGACTTCCAACACTCATAATTGAAACAGACTTATTTGGTCTATACATAGACTTTAAGAGTGGGCACGTCATTCCTTGTTGATTTGATATAAATGTGAAATATAGTGATGTACCGGTTGCCTGGTCCGTTCCTCTGCATAATCACTAAATATTTTGAGGTAAATGGGCGAGCAAGTTCTTTGGAATTGGAA
TTCGGTTTCCACTTCTCTCCATAATCACTAAATATTTTTAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAAGTGCATTATTAGCAGGTGATCTG
CAAACTTTTTTATAACCGCAGGAAGAAAATAGTGAGAACTTTTATGACTGTTAATTGCTGTGTTTTTCAAGGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCT
CAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCA
ATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCA
TGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAG
GATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACG
TTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTA
>TRINITY_DN102776_c0_g1_i9 from sample A4 / Example unspliced isoform:GCCAAAGAGTGCTCTTATCTACCAAGAGGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGTTTAGCGGTCCTGGTAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGgtatcttatttcatcaattccatca
agagcattgccctgtttttttaaatatcatgctatgaagaaaacatacaccaaaccggttttacttgcagGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAAGTGCATTATTAGCAGGTGATCTGCAAACTTTTTTATAACCGCAGG
AAGAAAATAGTGAGAACTTTTATGACTGTTAATTGCTGTGTTTTTCAAGGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCA
TCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTT
GTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGG
CCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGA
GGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTAC
TATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTA
Intron 3 GTAAGAAATA ... GCTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.52 | 133.6 | 6 | 9.4 |
| A2 | 6.35 | 140.8 | 0 | 11.3 |
| A3 | 7.29 | 186.4 | 0 | 18.4 |
| A4 | 7.41 | 95.9 | 0 | 8.1 |
| A5 | 6.9 | 63.5 | 0 | 5.9 |
| A6 | 8.55 | 1018.5 | 3 | 118.1 |
| A7 | 8.55 | 1143.8 | 1 | 136.3 |
| A8 | 7.55 | 1075.3 | 1 | 109.3 |
| A9 | 7.74 | 962.8 | 3 | 101.8 |
| A10 | 7.76 | 818.4 | 0 | 85.8 |
>TRINITY_DN42105_c0_g1_i1 from sample A6 / Example spliced isoformAACTTGTTATTGGGCCCTCTGGAAACAGTCACGTGTCCGTCACCGACCGGTTGGGAACCGGCCGCGTTGTTGTAGCCCAGGAGCTTCAAAGGGCAAAGGGCCAAAGAGTGCTCTTATCTACCAAGAGGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGTTTAGCGGTCCTGG
TAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGG
AACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTAC
TCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAAT
GCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACAT
GCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGG
CCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGT
TTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAA
>TRINITY_DN42105_c0_g1_i11 from sample A6 / Example unspliced isoform:CCGAGAATGGAACTGATTATTGGgtaagaaatatgttcataggttcacagtctttctatgcaagcttatttaacatactggtttcaattcgtattgttttcttgaacatttactcatggttgtgtttgaactgtggcttgtacagCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTG
CGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAG
TACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGG
CAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAA
Intron 4 GTAAATGGGC ... ATATTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.17 | 39 | 6 | 48 |
| A2 | 53.47 | 47 | 10 | 54 |
| A3 | 52.88 | 49 | 5 | 55 |
| A4 | 52.27 | 42 | 5 | 46 |
| A5 | 47.27 | 29 | 4 | 26 |
| A6 | 54.33 | 153 | 27 | 182 |
| A7 | 51.04 | 188 | 26 | 196 |
| A8 | 52.32 | 113 | 12 | 124 |
| A9 | 53.31 | 169 | 21 | 193 |
| A10 | 51.26 | 212 | 27 | 223 |
>TRINITY_DN106285_c0_g1_i4 from sample A5 / Example spliced isoformTGATCCTGAATTTGAATTCGGATATCAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCATATGTAGGCTTCTAAAATGAATAAGCGTAAGACTTCCAACACTCATAATTGAAACAGACTTATTTGGTCTATACATAGACTTTAAGAGTGGGCACGTCATTCC
TTGTTGATTTGATATAAATGTGAAATATAGTGATGTACCGGTTGCCTGGTCCGTTCCTCTGCATAATCACTAAATATTTTGAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGT
TTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGC
ATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAG
CTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGAC
TTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGT
GGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAG
CAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAA
ATGGTTCTCTGGTAATTAAGAAACAC
>TRINITY_DN106285_c0_g1_i6 from sample A5 / Example unspliced isoform:TGATCCTGAATTTGAATTCGGATATCAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCATATGTAGGCTTCTAAAATGAATAAGCGTAAGACTTCCAACACTCATAATTGAAACAGACTTATTTGGTCTATACATAGACTTTAAGAGTGGGCACGTCATTCC
TTGTTGATTTGATATAAATGTGAAATATAGTGATGTACCGGTTGCCTGGTCCGTTCCTCTGCATAATCACTAAATATTTTGAGgtaaatgggcgagcaagttctttggaattggaattcggtttccacttctctccataatcactaaatatttttagGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAA
TCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGAT
GCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTA
TCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTT
CCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGG
AATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATT
TTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGT
CTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAAACAC
Intron 5 GTAGGACAAT ... TGTTTACGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.82 | 70 | 116 | 131 |
| A2 | 59.87 | 63 | 91 | 97 |
| A3 | 59.16 | 97 | 152 | 129 |
| A4 | 64.41 | 50 | 93 | 88 |
| A5 | 64.09 | 31 | 62.7 | 48 |
| A6 | 57.31 | 364 | 342.3 | 635 |
| A7 | 54.73 | 459 | 387.7 | 722 |
| A8 | 54.98 | 382 | 263 | 670 |
| A9 | 57.76 | 380 | 377.3 | 662 |
| A10 | 57.92 | 338 | 356.3 | 574 |
>TRINITY_DN106285_c0_g1_i3 from sample A5 / Example spliced isoformTTTATCTTTAATACTCAGAGAGGCCCGAGAGTCTGTAGATATCTTTGTTATCAGATTCTTGTTTTTTGCATTTTTTTATATATTCAAGTACGGGATTTTATTGCCTTTTAACATTTGTGCTTATATACTGATTATAGAAATCTGGGGTCACAACATATCTTTAAAATCTAGTGATGGAACTGCTGAAGCAAGTGTTTTTT
GAATAATGCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGA
GGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCAC
TGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCT
GATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAAACAC
>TRINITY_DN106285_c0_g1_i6 from sample A5 / Example unspliced isoform:TGATCCTGAATTTGAATTCGGATATCAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCATATGTAGGCTTCTAAAATGAATAAGCGTAAGACTTCCAACACTCATAATTGAAACAGACTTATTTGGTCTATACATAGACTTTAAGAGTGGGCACGTCATTCC
TTGTTGATTTGATATAAATGTGAAATATAGTGATGTACCGGTTGCCTGGTCCGTTCCTCTGCATAATCACTAAATATTTTGAGGTAAATGGGCGAGCAAGTTCTTTGGAATTGGAATTCGGTTTCCACTTCTCTCCATAATCACTAAATATTTTTAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAA
TCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAgtaggacaatttaagcgcctcctaggagtgcttcccacccccaggaacttgttagaaaatgttccccttaaaacttatccgaagggtttgaacttgccaaagcaattcgat
gcacggaaagcttggcctcagtgtacttctgttcgaaccatcctagatcaggggcactgtggttcttgctgggcatttggtgcagtggaagcactttctgataggttttgcattcactataaagtgaacgttactctctccgaaaatgacctagtggcatgttgtggattcgagtgtggggacggctgtgatggtggcta
tccattatccgcatggcaatacttcatcaggaccggtgttgtaactgccgagtgcgacccctactttgatgaagctggttgccaacatccaggctgcgagcctggatatcccactcctaagtgtgtgaagcaatgcaaagatgaaaaccaaaactggggcaattccaaacgctttagcgcgactgcttacagaattagtt
ccaagccatatgatatcatggcggaggtttataccaatggccctgtggaggttgatttttctgtttacgagGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGG
AATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATT
TTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGT
CTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAAACAC
Intron 6 GTGAGAAATT ... GTATATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.36 | 131 | 17 | 50 |
| A2 | 20.16 | 97 | 11 | 38 |
| A3 | 24.56 | 129 | 26 | 58 |
| A4 | 23.14 | 88 | 17 | 36 |
| A5 | 24.41 | 48 | 13 | 18 |
| A6 | 20.33 | 635 | 75 | 249 |
| A7 | 23.8 | 722.1 | 110 | 341 |
| A8 | 22.9 | 670 | 94 | 304 |
| A9 | 21.34 | 662 | 98.2 | 261 |
| A10 | 21.37 | 574 | 71 | 241 |
>TRINITY_DN45445_c0_g1_i13 from sample A7 / Example spliced isoformCTGAATTTGAATTCGGATAACAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCGTATGTAGGCTTCTAAAATGAATAAGCGTAAGACTTCCAACACTCATAATTGAAACAGACTTATTTGGTCTATACATAGACTTTAAGAGTGGGCACGTCATTCCTTGTT
GATTTGATATAAATGTGAAATATAGTGATGTACCGGTTGCCTGGTCCGTTCCTCTGCATAATCACTAAATATTTTGAGGTAAATGGGCGAGCAAGTTCTTTGGAATTGGAATTCGGTTTCCACTTCTCTCCATAATCACTAAATATTTTTAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTC
AAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACG
GAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCAT
TATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAG
CCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATAC
AGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTT
TGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGT
TTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGT
>TRINITY_DN45445_c0_g1_i9 from sample A7 / Example unspliced isoform:CTGAATTTGAATTCGGATAACAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCGTATGTAGGCTTCTAAAATGAATAAGCGTAAGACTTCCAACACTCATAATTGAAACAGACTTATTTGGTCTATACATAGACTTTAAGAGTGGGCACGTCATTCCTTGTT
GATTTGATATAAATGTGAAATATAGTGATGTACCGGTTGCCTGGTCCGTTCCTCTGCATAATCACTAAATATTTTGAGGTAAATGGGCGAGCAAGTTCTTTGGAATTGGAATTCGGTTTCCACTTCTCTCCATAATCACTAAATATTTTTAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTC
AAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACG
GAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCAT
TATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAG
CCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGgtaagaaattagcttctcacaagtcattaactggtgtgtgcgttcttcaatcttttgtttatgttgtatatatttaagaagaagtactacaccctccctaattctgatttgcgaggtaacagatatacgatcat
atctggttagataaggattgatcaggactttacaaggttgatcaagacccgagttgacctgagcacagtgaaaagtaaattgtcaacaaacctttcaaaagtgatgcagctacaggctgcctatctgagagtgcacagcaatgcaatggaagcaacaaaaataaacgaaatctcatggcagcaaggcataccaggctctt
cactattaatattaaaacaaggttagagaccattacagagctattctgctcattacatcatattctcggaaatgacattcgcgagcacacaggctcagcctatttagacttaccctatctcatttcacacagacttaaagccttcctttctaatatagtcagtcctcagtctgattcttctcggatctgtgatcccgctt
gcttggaggatcctttcggctatcctctcgatcgatcccgagttgcccacaacttcaagctcaaccgttcctttatatcctccagcagtggttaaactcttgtttttccggttggttgtccttgggcaaaacaacaaagcaaaactttgccttcttgaattctttcaggagttatttgacctgagcacagtgatacccgg
ctgctaccacattttccatgttcttcattcatggaagtaaaatgaacttccaaccccactttactgcaactagttgttaatatcctgatctggaacgtttctttgatttcaagatgtctcctgtaaacaaccttggctaaaatccaagccaaaaacatacaagggtgtatttgactaattttatttaaatgagcttccca
ctcatatacttaataaatacagtcagtgagcatggcttatcagcaccgaatactattgacatgttatcatcagtaagatatataacctgatataatggtgatactgatgagttctttcaactggatctttaacatgaatgagagattcatgtatttctcttgatatctgtacttaaccggcatacttggggcagaatatt
ttatttgctagaaatcaacaacccatctaatttagtttcagtgatttttaaatagacaatggctgagaaatagagtgcttaatgatggcatgtatatccagGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGA
ACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTA
CATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTT
AGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGT
Intron 7 GTATAAGAAG ... CAATTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.29 | 106 | 18 | 50 |
| A2 | 26.28 | 101 | 19 | 53 |
| A3 | 20.25 | 128 | 14 | 51 |
| A4 | 23.16 | 73 | 11 | 33 |
| A5 | 20 | 76 | 12 | 26 |
| A6 | 20.59 | 405 | 59 | 151 |
| A7 | 22.24 | 514 | 74 | 220 |
| A8 | 21.45 | 379 | 44 | 163 |
| A9 | 19.9 | 477 | 71 | 166 |
| A10 | 21.86 | 361 | 74 | 128 |
>TRINITY_DN43347_c0_g2_i6 from sample A8 / Example spliced isoformTGAAGGTGAAGAAAACTTGTTATTGGGCCCTCTGGAAACAGTCACGTGTCCGTCACCGACCGGTTGGGAACCGGCCGCGTTGTTGTAGCCCAGGAGCTTCAAAGGGCAAAGGGCCAAAGAGTGCTCTTATCTACCAAGAGGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGT
TTAGCGGTCCTGGTAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCT
TCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATA
AAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAG
TGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTA
CTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAG
CTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCTAATTTATTTGTGACATTTGTATTTG
TTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAG
>TRINITY_DN43347_c0_g2_i4 from sample A8 / Example unspliced isoform:ATTCAAGTACGGGATTTTATTGCCTTTTAACATTTGTGCTTATATACTGATTATAGAAATCTGGGGTCACAACATATCTTTAAAATCTAGTGATGGAACTGCTGAAGCAAGTGTTTTTTGAATAATGCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAA
TTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACT
TCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCAT
CAGGACCGGTGTTGTAACTGCCGAGgtataagaagtccctttgtcattaaactgtagttttatcagaggacatttagggtatctcaagtatagtattcagtgaagcagcatatcactagcttgtcatgaactgtatgtttcactgagtttagagtaggcttttgactaataattttgtcaatttgtagTGCGACCCCTAC
TTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGT
TTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAG
AAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGA
ATCTGACGAGCAAAGATAAAAATAAAGTACCTAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAA
TGCTGCACAAATGGTTCTCTGGTAATTAAG
Intron 8 GTATGTTTCT ... GTGTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.93 | 113.7 | 4.7 | 40 |
| A2 | 17.01 | 107 | 8.9 | 20 |
| A3 | 16.73 | 159.1 | 12.2 | 30 |
| A4 | 27.56 | 86.1 | 10 | 31 |
| A5 | 23.82 | 60.3 | 2 | 18 |
| A6 | 23.7 | 1003.8 | 46.3 | 302 |
| A7 | 21.06 | 1045 | 49 | 270 |
| A8 | 23.87 | 1067.6 | 59.3 | 322 |
| A9 | 21.09 | 899.2 | 55.4 | 230 |
| A10 | 21.67 | 717.2 | 45.4 | 191 |
>TRINITY_DN45445_c0_g1_i18 from sample A7 / Example spliced isoformGCAGTGCTAAAAAAAGGAGCAGAAATGGCATCGAGATTCTTTTTCTGTTTAACGGTCCTGGTGGCCATGGCTGCCGCTCTTCAGGCGTCTCAGCTGGAGTCCTTTCCTACACAGAGCCAAGACAGAATCCTGAAGGAGCCTATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCG
CTTTTCCGATCACACAGTAGGACAATTTAAGCGTCTCCTTGGAGTACTTCCCACCCCCAAGAATTTATTAGAAGATGTTCCAGTCAAAACTTACCCGAAGGGTTTGAACTTACCAAAGCAATTCGATGCACGGGAAGCTTGGCCGCAGTGTACTTCTGTTCAAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGG
CATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACCATAATGTGAACGTTACTCTCTCGGAAAATGATCTAGTGGCATGTTGTGGATTCATGTGTGGTGACGGTTGTGATGGTGGTTATCCAATATCCGCATGGAAGTACTTTATTAGTACTGGTGTTGTAACTGCCGAGTGCAACCCCTACTTTGATGAT
GCTGGCTGCCAACATCCAGGCTGCGAGCCTTTATATCCAACTCCTCAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAATTGGGATAATTCCAAACGCTTTAGCGCAACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTCTATACAAATGGCCCGGTGGAGGTTTCTTTCTCTGTTTACGAGGT
AAGAAATTAGCTTCTCACAAGTCATTAACTGGTGTGTGCGTTCTTCAATCTTTTGTTTATGTTGTATATATTTAAGAAGAAGTACTACACCCTCCCTAATTCTGATTTGCGAGGTAACAGATATACGATCATATCTGGTTAGATAAGGATTGATCAGGACTTTACAAGGTTGATCAAGACCCGAGTTGACCTGAGCACAG
TGAAAAGTAAATTGTCAACAAACCTTTCAAAAGTGATGCAGCTACAGGCTGCCTATCTGAGAGTGCACAGCAATGCAATGGAAGCAACAAAAATAAACGAAATCTCATGGCAGCAAGGCATACCAGGCTCTTCACTATTAATATTAAAACAAGGTTAGAGACCATTACAGAGCTATTCTGCTCATTACATCATATTCTCG
GAAATGACATTCGCGAGCACACAGGCTCAGCCTATTTAGACTTACCCTATCTCATTTCACACAGACTTAAAGCCTTCCTTTCTAATATAGTCAGTCCTCAGTCTGATTCTTCTCGGATCTGTGATCCCGCTTGCTTGGAGGATCCTTTCGGCTATCCTCTCGATCGATCCCGAGTTGCCCACAACTTCAAGCTCAACCGT
TCCTTTATATCCTCCAGCAGTGGTTAAACTCTTGTTTTTCCGGTTGGTTGTCCTTGGGCAAAACAACAAAGCAAAACTTTGCCTTCTTGAATTCTTTCAGGAGTTATTTGACCTGAGCACAGTGATACCCGGCTGCTACCACATTTTCCATGTTCTTCATTCATGGAAGTAAAATGAACTTCCAACCCCACTTTACTGCA
ACTAGTTGTTAATATCCTGATCTGGAACGTTTCTTTGATTTCAAGATGTCTCCTGTAAACAACCTTGGCTAAAATCCAAGCCAAAAACATACAAGGGTGTATTTGACTAATTTTATTTAAATGAGCTTCCCACTCATATACTTAATAAATACAGTCAGTGAGCATGGCTTATCAGCACCGAATACTATTGACATGTTATC
ATCAGTAAGATATATAACCTGATATAATGGTGATACTGATGAGTTCTTTCAACTGGATCTTTAACATGAATGAGAGATTCATGTATTTCTCTTGATATCTGTACTTAACCGGCATACTTGGGGCAGAATATTTTATTTGCTAGAAATCAACAACCCATCTAATTTAGTTTCAGTGATTTTTAAATAGACAATGGCTGAGA
AATAGAGTGCTTAATGATGGCATGTATATCCAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGC
GAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGT
ACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGC
AGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGT
>TRINITY_DN45445_c0_g1_i20 from sample A7 / Example unspliced isoform:CCGAGGATGGAACTGATTATTGGGTAAGAAATATGTTCATAGGTTCACAGTCTTTCTATGCAAGCTTATTTAACATACTGGTTTCAATTCGTATTGTTTTCTTGAACATTTACTCATGGTTGTGTTTGAACTGTGGCTTGTACAGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGgtatgtttctgtgttttca
tccagctccacttccattttctgatatggttgaatgagttttaacccattaactagcacaatttttcatgaagatctcttcctctaaagaatttgatttgagaattatggtatagatttagagtataattaaccttttatgtttgtactagaaaacaatgagagttttgcggaacagcgactgagaattgcatttcgctt
gtgttgacagGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGT
GCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTT
ATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGT
Intron 9 GTAAATGCAG ... TTATCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.34 | 15.5 | 2 | 0 |
| A2 | 1.06 | 14 | 0 | 0.5 |
| A3 | 20.72 | 19.5 | 2 | 3.5 |
| A4 | 31.29 | 17.5 | 5 | 6.5 |
| A5 | 19.61 | 9 | 0 | 2 |
| A6 | 16.96 | 43 | 1 | 0.5 |
| A7 | 13.8 | 49 | 3.5 | 1.5 |
| A8 | 26.39 | 41 | 8.5 | 6.5 |
| A9 | 2.38 | 50 | 0.5 | 0 |
| A10 | 6.21 | 41.5 | 1 | 1 |
>TRINITY_DN102776_c0_g1_i3 from sample A4 / Example spliced isoformTTTAAATTTATCATAAATGGAGATGATTTAGGAATCTAACTTGCTTTTTTTCCATATCGTTGTGGAATGTGCAATGTCGGCCATCGATATGATGTTGTTCCTGATGAGAGCAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTA
CTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAA
TGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACA
TGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATG
GCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTG
TTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTA
>TRINITY_DN102776_c0_g1_i2 from sample A4 / Example unspliced isoform:TCCTGATGAGAGCAGATCAGgtaaatgcaggctatttgcttttactcgttgtgcatagtatttctttgttgtaatcatcattttgaaatccgccgcctactgtagaccgtggataactaagtggtgttatcaacagGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTC
ACTATAAAGTGGTAGGACTCCATAACATCAATTATGTTTTGGCTAGGTGGTCTTCTTATCTTTTATTGATTTCCGGACGTATATTCTGATTTCATTTTTCTTCGTTATGCC
Intron 10 GTAAGTGCAT ... GTTTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.26 | 112.6 | 10.6 | 32 |
| A2 | 11.38 | 87.2 | 7.7 | 11 |
| A3 | 17.71 | 146.1 | 16.2 | 31 |
| A4 | 23.26 | 89.9 | 7.9 | 27 |
| A5 | 25.74 | 61.2 | 4 | 21 |
| A6 | 16 | 327.2 | 33.6 | 61 |
| A7 | 16.63 | 372.2 | 34.6 | 73 |
| A8 | 17.07 | 252 | 23.8 | 51 |
| A9 | 15.25 | 362 | 32.7 | 64 |
| A10 | 15.41 | 341.3 | 27.1 | 61 |
>TRINITY_DN122048_c0_g2_i1 from sample A1 / Example spliced isoformAGAGCCAAGACAGAATCCTCAAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCG
ATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGC
TATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAG
TTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCAT
GGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAA
TTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGG
GTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAAACACTCTAGGATGAGC
>TRINITY_DN122048_c0_g2_i9 from sample A1 / Example unspliced isoform:AGAGCCAAGACAGAATCCTCAAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAgtaagtgcattattagcaggtgatctgcaaacttttttataaccgcaggaagaaaatagtgagaacttttatgactgttaattgctgtgtttttcaagGTAGGACAATT
TAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGGTCAGTAGCCTTCGTTGTAATCTCTTCAATAGACTGCAATGTGGGTCTTTAGGA
ATCTCTTTAGAATCATAG
Intron 11 GTCAGTAGCC ... ATGAGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.06 | 65.6 | 10 | 23.6 |
| A2 | 28.15 | 44.1 | 14 | 19.7 |
| A3 | 22.08 | 82.9 | 18 | 28 |
| A4 | 26.37 | 48.6 | 8 | 25.4 |
| A5 | 22.89 | 26.4 | 4 | 11 |
| A6 | 20.17 | 211.4 | 31 | 72.4 |
| A7 | 18.17 | 230.3 | 30 | 70.3 |
| A8 | 20.99 | 202.6 | 37 | 67.9 |
| A9 | 19.64 | 242.4 | 39 | 77.1 |
| A10 | 19.59 | 224.7 | 44 | 63.6 |
>TRINITY_DN111784_c0_g1_i8 from sample A2 / Example spliced isoformGTTTTATTCTTAACCAATCCAATTAAAATTTTAGAGAAAAATGGTGGAACAGAACTTGCCAAGTTATCGTACGTGTACGGTTACGAAAAAATCTAACAAAATCTTCAGTCCACTTACGGCGCCTTGAAATCTCGTCCACTCACCGGGTTGCATGTAGACAGCTGGGCGAGTCTGATCCTGAATTTGAATTCGGATATCAA
AGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCATATGTAGGCTTCTAAAATGAATAAGCGTAAGACTTCCAACACTCATAATTGAAACAGACTTATTTGGTCTATACATAGACTTTAAGAGTGGGCACGTCATTCCTTGTTGATTTGATATAAATGTGAAATAT
AGTGATGTACGGGTTGCCTGGTCCGTTCCTCTGCATAATCACTAAATATTTTGAGGTAAATGGGCGAGCAAGTTCTTTGGAATTGGAATTCGGTTTCCACTTCTCTCCATAATCACTAAATATTTTTAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAAT
TAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTT
CTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATC
AGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGT
TTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATT
TTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATAT
ATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCTAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTAAAAAAAAC
>TRINITY_DN111784_c0_g1_i6 from sample A2 / Example unspliced isoform:GAGGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGTTTAGCGGTCCTGGTAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGC
TGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGgtcagtagcctt
cgttgtaatctcttcaatagactgcaatgtgggtctttaggaatctctttagaatcatagtaaatacttattgctactttaaatttatcataaatggagatgatttaggaatctaacttgctttttttccatatcgttgtggaatgtgcaatgtcggccatcgatatgatgttgttcctgatgagagcagATCAGGGGCA
CTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCG
ACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGAT
TTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATG
TAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCA
TTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCTAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTAAAAAAAAC
Intron 12 GTAGGACAAT ... TGTTTACGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.92 | 70 | 116 | 132 |
| A2 | 59.62 | 63 | 89 | 97 |
| A3 | 59.16 | 97 | 152 | 129 |
| A4 | 64.16 | 50 | 93 | 86 |
| A5 | 64.37 | 31 | 64 | 48 |
| A6 | 57.45 | 364 | 343 | 640 |
| A7 | 54.93 | 459 | 387 | 732 |
| A8 | 55.09 | 382 | 262 | 675 |
| A9 | 57.94 | 380 | 378 | 669 |
| A10 | 58.19 | 338 | 357 | 584 |
>TRINITY_DN106285_c0_g1_i3 from sample A5 / Example spliced isoformTTTATCTTTAATACTCAGAGAGGCCCGAGAGTCTGTAGATATCTTTGTTATCAGATTCTTGTTTTTTGCATTTTTTTATATATTCAAGTACGGGATTTTATTGCCTTTTAACATTTGTGCTTATATACTGATTATAGAAATCTGGGGTCACAACATATCTTTAAAATCTAGTGATGGAACTGCTGAAGCAAGTGTTTTTT
GAATAATGCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGA
GGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCAC
TGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCT
GATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAAACAC
>TRINITY_DN106285_c0_g1_i12 from sample A5 / Example unspliced isoform:GGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGTTTAGCGGTCCTGGTAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTG
GCATGAATTCTCGTTTTTCCAATCACACAgtaggacaatttaagcgcctcctaggagtgcttcccacccccaggaacttgttagaaaatgttccccttaaaacttatccgaagggtttgaacttgccaaagcaattcgatgcacggaaagcttggcctcagtgtacttctgttcgaaccatcctaggtcagtagccttcg
ttgtaatctcttcaatagactgcaatgtgggtctttaggaatctctttagaatcatagtaaatacttattgctactttaaatttatcataaatggagatgatttaggaatctaacttgctttttttccatatcgttgtggaatgtgcaatgtcggccatcgatatgatgttgttcctgatgagagcagatcaggggcact
gtggttcttgctgggcatttggtgcagtggaagcactttctgataggttttgcattcaccataatgtgaacgttactctctcggaaaatgatctagtggcatgttgtggattcatgtgtggtgacggttgtgatggtggttatccaatatccgcatggaagtactttattagtactggtgttgtaactgccgagtgcaac
ccctactttgatgatgctggctgccaacatccaggctgcgagcctttatatccaactcctcagtgtgtgaagcaatgcaaagatggaaaccaaaattggggtaattccaaacgctttagcgcaactgcttacagaattagttccaagccatatgatatcatggcggaggtctatacaaatggcccggtggaggttttttt
ctctgtttacgagGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTA
GCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATT
GAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAAT
ACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAAACAC
Intron 13 GTATCTTATT ... TTACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.42 | 114.3 | 1 | 1.5 |
| A2 | 0.88 | 121.3 | 0 | 1 |
| A3 | 2.29 | 139.4 | 2.5 | 3 |
| A4 | 1.7 | 96.4 | 0.5 | 1.5 |
| A5 | 0 | 57.8 | 0 | 0 |
| A6 | 0.62 | 347.8 | 0.5 | 2 |
| A7 | 0.12 | 441 | 0 | 0.5 |
| A8 | 1.6 | 262.1 | 0 | 4 |
| A9 | 0.26 | 427.3 | 0 | 1 |
| A10 | 0 | 416.8 | 0 | 0 |
>TRINITY_DN112793_c1_g1_i7 from sample A3 / Example spliced isoformCCCCGGTTGATATGAAAACTGTTTCATCATATTAAAGACCTTAGCCCCAACCCATATTATAATTTTTTGTGGTCAGGGGCCAGGGCATCCTTTTATCTTCTCATTCTGTCAGCTTATTTGATAAAACCATTCCCTTTCTCTGTTCCATGTTTCCATGTTTGTACTTTGTAGTCTTTGTGCTTTTTTACTTCAAATAAAGA
ATGGGAAATTATTTTTTCAAAATTCTTTTCTCCATTTATTTGTACAGATATGTTTTAATTTTTTTCCAAACAGTAGACTTTGGCTGTAATTTGATTTTATCTTTAATACTCAGAGAGGCCCGAGAGTCTGTAGATATCTTTGTTATCAGATTCTTGTTTTTTGCATTTTTTTATATATTCAAGTACGGGATTTTATTGCC
TTTTAACATTTGTGCTTATATACTGATTATAGAAATCTGGGGTCACAACATATCTTTAAAATCTAGTGATGGAACTGCTGAAGCAAGTGTTTTTTGAATAATGCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGAT
GGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAG
GGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGA
GTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGG
TTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAAC
GAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGT
ACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGAGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATT
TACTAATACAAAATGCTGCACAAATGGTTCTCTGGTG
>TRINITY_DN112793_c1_g1_i9 from sample A3 / Example unspliced isoform:GAGCCAAGACAGAATCCTCAAGgtatcttatttcatcaattccatcaagagcattgccctgttttttaaatatcatgctatgaagaaaacatacaccaaaccggttttacttgcagGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTA
AGTGCATTATTAGCAGGTGATCTGCAAACTTTTTTATAACCGCAGGAAGAAAATAGTGAGAACTTTTATGACTGTTAATTGCTGTGTTTTTCAAGGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAA
TTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGG
TGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAA
TTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAAC
TCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTC
GTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGC
TGAGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTG
Intron 14 GTAGGACTCC ... GCCATGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.61 | 127 | 4 | 20 |
| A2 | 14.68 | 93 | 9 | 16 |
| A3 | 12.93 | 128 | 6 | 19 |
| A4 | 8.53 | 118 | 9 | 11 |
| A5 | 12.35 | 71 | 2 | 10 |
| A6 | 12.87 | 386 | 3 | 57 |
| A7 | 15.23 | 451 | 11 | 81 |
| A8 | 12.18 | 310 | 6 | 43 |
| A9 | 16.84 | 410 | 11 | 83 |
| A10 | 15.75 | 428 | 9 | 80 |
>TRINITY_DN45445_c0_g1_i7 from sample A7 / Example spliced isoformGAAGAAAACTTGTTATTGGGCCCTCTGGAAACAGTCACGTGTCCGTCACCGACCGGTTGGGAACCGGCCGCGTTGTTGTAGCCCAGGAGCTTCAAAGGGCAAAGGGCCAAAGAGTGCTCTTATCTACCAAGAGGAAACAGTCCTGCAAAAGGTGAGCCACTGAGCAGCAATGGCATCGAGATTCTTTTTCTGTTTAGCGG
TCCTGGTAGCCATGGTTGCCACTATTCAGGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACC
CCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAA
CGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGA
AGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGTAAGAAATTAGCTTCTCACAAGTCATTAACTGGTGTGTGCGTTCTTCAATCTTTTG
TTTATGTTGTATATATTTAAGAAGAAGTACTACACCCTCCCTAATTCTGATTTGCGAGGTAACAGATATACGATCATATCTGGTTAGATAAGGATTGATCAGGACTTTACAAGGTTGATCAAGACCCGAGTTGACCTGAGCACAGTGAAAAGTAAATTGTCAACAAACCTTTCAAAAGTGATGCAGCTACAGGCTGCCTA
TCTGAGAGTGCACAGCAATGCAATGGAAGCAACAAAAATAAACGAAATCTCATGGCAGCAAGGCATACCAGGCTCTTCACTATTAATATTAAAACAAGGTTAGAGACCATTACAGAGCTATTCTGCTCATTACATCATATTCTCGGAAATGACATTCGCGAGCACACAGGCTCAGCCTATTTAGACTTACCCTATCTCAT
TTCACACAGACTTAAAGCCTTCCTTTCTAATATAGTCAGTCCTCAGTCTGATTCTTCTCGGATCTGTGATCCCGCTTGCTTGGAGGATCCTTTCGGCTATCCTCTCGATCGATCCCGAGTTGCCCACAACTTCAAGCTCAACCGTTCCTTTATATCCTCCAGCAGTGGTTAAACTCTTGTTTTTCCGGTTGGTTGTCCTT
GGGCAAAACAACAAAGCAAAACTTTGCCTTCTTGAATTCTTTCAGGAGTTATTTGACCTGAGCACAGTGATACCCGGCTGCTACCACATTTTCCATGTTCTTCATTCATGGAAGTAAAATGAACTTCCAACCCCACTTTACTGCAACTAGTTGTTAATATCCTGATCTGGAACGTTTCTTTGATTTCAAGATGTCTCCTG
TAAACAACCTTGGCTAAAATCCAAGCCAAAAACATACAAGGGTGTATTTGACTAATTTTATTTAAATGAGCTTCCCACTCATATACTTAATAAATACAGTCAGTGAGCATGGCTTATCAGCACCGAATACTATTGACATGTTATCATCAGTAAGATATATAACCTGATATAATGGTGATACTGATGAGTTCTTTCAACTG
GATCTTTAACATGAATGAGAGATTCATGTATTTCTCTTGATATCTGTACTTAACCGGCATACTTGGGGCAGAATATTTTATTTGCTAGAAATCAACAACCCATCTAATTTAGTTTCAGTGATTTTTAAATAGACAATGGCTGAGAAATAGAGTGCTTAATGATGGCATGTATATCCAGGACTTTGCTCATTACAAGTCCG
GTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCA
ACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTA
CCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGT
>TRINITY_DN45445_c0_g1_i6 from sample A7 / Example unspliced isoform:AAATACTTATTGCTACTTTAAATTTATCATAAATGGAGATGATTTAGGAATCTAACTTGCTTTTTTTCCATATCGTTGTGGAATGTGCAATGTCGGCCATCGATATGATGTTGTTCCTGATGAGAGCAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCAC
TATAAAGTGgtaggactccataaacatcaattatgttttggctaggtggtcttcttatcttttattgatttccggacgtatattctgatttcatttttcttcgttatgccatgtcagAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATCCATTATC
CGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCCAAGCCAT
ATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGTAAGAAATTAGCTTCTCACAAGTCATTAACTGGTGTGTGCGTTCTTCAATCTTTTGTTTATGTTGTATATATTTAAGAAGAAGTACTACACCCTCCCTAATTCTGATTTGCGAGGTAACAGATATACGATCATATCT
GGTTAGATAAGGATTGATCAGGACTTTACAAGGTTGATCAAGACCCGAGTTGACCTGAGCACAGTGAAAAGTAAATTGTCAACAAACCTTTCAAAAGTGATGCAGCTACAGGCTGCCTATCTGAGAGTGCACAGCAATGCAATGGAAGCAACAAAAATAAACGAAATCTCATGGCAGCAAGGCATACCAGGCTCTTCACT
ATTAATATTAAAACAAGGTTAGAGACCATTACAGAGCTATTCTGCTCATTACATCATATTCTCGGAAATGACATTCGCGAGCACACAGGCTCAGCCTATTTAGACTTACCCTATCTCATTTCACACAGACTTAAAGCCTTCCTTTCTAATATAGTCAGTCCTCAGTCTGATTCTTCTCGGATCTGTGATCCCGCTTGCTT
GGAGGATCCTTTCGGCTATCCTCTCGATCGATCCCGAGTTGCCCACAACTTCAAGCTCAACCGTTCCTTTATATCCTCCAGCAGTGGTTAAACTCTTGTTTTTCCGGTTGGTTGTCCTTGGGCAAAACAACAAAGCAAAACTTTGCCTTCTTGAATTCTTTCAGGAGTTATTTGACCTGAGCACAGTGATACCCGGCTGC
TACCACATTTTCCATGTTCTTCATTCATGGAAGTAAAATGAACTTCCAACCCCACTTTACTGCAACTAGTTGTTAATATCCTGATCTGGAACGTTTCTTTGATTTCAAGATGTCTCCTGTAAACAACCTTGGCTAAAATCCAAGCCAAAAACATACAAGGGTGTATTTGACTAATTTTATTTAAATGAGCTTCCCACTCA
TATACTTAATAAATACAGTCAGTGAGCATGGCTTATCAGCACCGAATACTATTGACATGTTATCATCAGTAAGATATATAACCTGATATAATGGTGATACTGATGAGTTCTTTCAACTGGATCTTTAACATGAATGAGAGATTCATGTATTTCTCTTGATATCTGTACTTAACCGGCATACTTGGGGCAGAATATTTTAT
TTGCTAGAAATCAACAACCCATCTAATTTAGTTTCAGTGATTTTTAAATAGACAATGGCTGAGAAATAGAGTGCTTAATGATGGCATGTATATCCAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTG
ATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATT
ATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGAT
CTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGT
Intron 15 GTATGTTTCT ... GTGTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.64 | 115 | 0 | 40 |
| A2 | 16.54 | 110.4 | 2 | 20 |
| A3 | 16.42 | 162.2 | 0 | 30 |
| A4 | 27.22 | 87.2 | 4 | 31 |
| A5 | 23.46 | 61.4 | 0 | 18 |
| A6 | 23.5 | 1014 | 1 | 302 |
| A7 | 20.88 | 1054.8 | 2 | 270 |
| A8 | 23.61 | 1079.6 | 4 | 322 |
| A9 | 20.76 | 915 | 1 | 230 |
| A10 | 21.43 | 725.8 | 3 | 191 |
>TRINITY_DN45216_c1_g1_i4 from sample A10 / Example spliced isoformGCAAAACTTTGCCTTCTTGAATTCTTTCAGGAGTTATTTGACCTGAGCACAGTGATACCCGGCTGCTACCACATTTTCCATGTTCTTCATTCATGGAAGTAAAATGAACTTCCAACCCCACTTTACTGCAACTAGTTGTTAATATCCTGATCTGGAACGTTTCTTTGATTTCAAGATGTCTCCTGTAAACAACCTTGGCT
AAAATCCAAGCCAAAAACATACAAGGGTGTATTTGACTAATTTTATTTAAATGAGCTTCCCACTCATATACTTAATAAATACAATCAGTGAGCATGGCTTATCAGCACCGAATGCTATTGACATGTTATCATCAGTAAGATATATAACCTGATATAATGGTGATACTGATGAGTTCTTTCAACTGGATCTTTAACATGAA
TGAGAGATTCATGTATTTCTCTTGATATCTGTACTTAACCGGCATACTTGGGGCAGAATATTTTATTTGCTAGAAATCAACAACCCATCTAATTTAGTTTCAGTGATTTTTAAATAGACAATGGCTGAGAAATAGAGTGCTTAATGATGGCATGTATATCCAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACA
TCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTA
ACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTG
ACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAAAAAA
>TRINITY_DN45216_c1_g1_i5 from sample A10 / Example unspliced isoform:AACATACTGGTTTCAATTCGTATTGTTTTCTTGAACATTTACTTGGTTGTGTTTGAACTGTGGCTTGTACAGCTCGTGGCAAACTCATGGAATACAGCCTGGGGTGAGgtatgtttctgtgttttcatccagctccacttccattttctgatatggtcgaatgagttttacccattaactagcacaatttttcatgaaga
tctcttcctctaaagaatttgatttgagaattatggtatagatttagagtataattaaccttttatgtttgtactagaaaacaatgagagttttgcggaacagcgactgagaattgcatttcgcttgtgttgacagGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAG
GGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTTCTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATA
AAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCTTGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAAAAAA
Intron 16 GTAAGACTTC ... ATATTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.53 | 47 | 12 | 48 |
| A2 | 51.76 | 50.3 | 11 | 54 |
| A3 | 52.38 | 50 | 10 | 55 |
| A4 | 53.49 | 40 | 2 | 46 |
| A5 | 53.06 | 23 | 2 | 26 |
| A6 | 56.52 | 140 | 2 | 182 |
| A7 | 54.19 | 165.7 | 5 | 196 |
| A8 | 51.88 | 115 | 1 | 124 |
| A9 | 54.67 | 160 | 1 | 193 |
| A10 | 53.1 | 197 | 5 | 223 |
>TRINITY_DN41060_c0_g3_i1 from sample A9 / Example spliced isoformCACCGGGTTGCATGTAGACAGCTGGGCGAGTCTGATCCTGAATTTGAATTCGGATAACAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCATATGTAGGCTTCTAAAATGAATAAGCGCATCTCTGCTGGAGTCCTTTCCTGCACAGAGCCAAGACAGAATC
CTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATCCGAAGGGTTTGAACTTGCCAAAGCAATTCGATGC
ACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGAACGTTACTCTCTCCGAAAATGACCTAGTGGCATGTTGTGGATTCGAGTGTGGGGACGGCTGTGATGGTGGCTATC
CATTATCCGCATGGCAATACTTCATCAGGACCGGTGTTGTAACTGCCGAGTGCGACCCCTACTTTGATGAAGCTGGTTGCCAACATCCAGGCTGCGAGCCTGGATATCCCACTCCTAAGTGTGTGAAGCAATGCAAAGATGAAAACCAAAACTGGGGCAATTCCAAACGCTTTAGCGCGACTGCTTACAGAATTAGTTCC
AAGCCATATGATATCATGGCGGAGGTTTATACCAATGGCCCTGTGGAGGTTGATTTTTCTGTTTACGAGGACTTTGCTCATTACAAGTCCGGTGTTTACAAGTACATCAAGGGTGACTACTTGGGAGGACATGCTGTGAAGCTGATAGGTTGGGGAACCGAGAATGGAACTGATTATTGGCTCGTGGCAAACTCATGGAA
TACAGCCTGGGGTGAGGATGGCTATTTTAAAATTGCGAGGGGTTCTAACGAATGTAGCATAGAAGAAGATGTGGTGGCAGGGATGCCTTCAACGAAGAATTTAGTAACGGATCCTGTAGCTGGCACTGATGGCCATGCATCTTCGTAATCTTTCATATCACAATGTTACATTATCTAATCTCTATAAAGTTCGTAATTTT
CTTTGTGCCGGAGACGTTGTAAATATATTTGGTAGTACTATATCAAAGTACTCATTGAAGGAATCTGACGAGCAAAGATAAAAATAAAGTACCCAATTTATTTGTGACATTTGTATTTGTTTGGCTGATTGTTTTCATGAACAGGGACAATTTGTGTAAATGCTATTTAGATCTTACAAGGAATACAGTGGCTGGGGTCT
TGTTTTATAATCTTCTTTTCCTTTGAGCAAGGTGGCAGTTATGTTTATTTACTAATACAAAATGCTGCACAAATGGTTCTCTGGTAATTAAGAAACACTCTGGGATGAGCATAG
>TRINITY_DN41060_c0_g3_i8 from sample A9 / Example unspliced isoform:CACCGGGTTGCATGTAGACAGCTGGGCGAGTCTGATCCTGAATTTGAATTCGGATAACAAAGAATAGAAAGATACGCTAAACTGTGCAAGTAGGGCGGGCCATCACCTTCAACGATCACATGCCTGGCATATGTAGGCTTCTAAAATGAATAAGCgtaagacttccaacactcataattgaaacagacttatttggtcta
tacatagactttaagagtgggcacgtcattccttgttgatttgatataaatgtgaaatatagtgatgtaccggttgcctggtccgttcctctgcataatcactaaatattttgaggtaaatgggcgagcaagttctttggaattggaattcggtttccacttctctccataatcactaaatatttttagGCATCTCTGCT
GGAGTCCTTTCCTGCACAGAGCCAAGACAGAATCCTCAAGGAACCCATAGTAGAAGAAATTAACAGGCATCCAAATGCTGGATGGAAGGCTGGCATGAATTCTCGTTTTTCCAATCACACAGTAGGACAATTTAAGCGCCTCCTAGGAGTGCTTCCCACCCCCAGGAACTTGTTAGAAAATGTTCCCCTTAAAACTTATC
CGAAGGGTTTGAACTTGCCAAAGCAATTCGATGCACGGAAAGCTTGGCCTCAGTGTACTTCTGTTCGAACCATCCTAGATCAGGGGCACTGTGGTTCTTGCTGGGCATTTGGTGCAGTGGAAGCACTTTCTGATAGGTTTTGCATTCACTATAAAGTGGTAGGACTCCATAACATCAATTATGTTTTGGCTAGGTGGTCT
TCTTATCTTTTATTGATTTCCGGACGTATATTCTGATTTCATTTTTCTTCGTTATGCCATGTCAGAACGTTACTCTCCCC