NA ----> NA
Intron 1 GTATATCACA ... AATTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.92 | 57 | 10 | 21 |
| A2 | 26.47 | 50 | 7 | 18 |
| A3 | 34.18 | 52 | 2 | 27 |
| A4 | 23.08 | 40 | 3 | 12 |
| A5 | 28.57 | 10 | 3 | 4 |
| A6 | 29.6 | 352 | 42 | 148 |
| A7 | 28.28 | 535 | 50 | 211 |
| A8 | 26.47 | 439 | 33 | 158 |
| A9 | 25.29 | 570 | 46 | 193 |
| A10 | 25.35 | 421 | 29 | 143 |
>TRINITY_DN44969_c0_g2_i7 from sample A8 / Example spliced isoformGCAGAATTTATTAAAAAATAAATTTTAACGTGTCAGATTGATTATACTGTGGATATTCTTTGTCTGGTTCATGATCGGAGCATTGAGATTTAATGAAATAACTCATCCGCATGTTTAAATTCAACCAGTCACTAATAATTGTTTTTAAAAATAGATTTATTATAGATGGCTGGCAGTTTCAAATAAATGATCATCCACTT
GGCATCGGGCTCCTCTTCAATGTAACGCTTACTAACTTCAAGTACTCAACTCCTTGGCCGATTAAGATCCACCACCCACCGTTACATTTTATAGGTTAATAGATGTCTACAATCACTGCCCATCAAGGTGTCGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAA
CAGCGTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGCTGCCTT
CAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAA
AGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATAT
CTGAGAAAATTATATTACTGAATGCCGATTCAATTCTTGAATCTATAAATT
>TRINITY_DN44969_c0_g2_i8 from sample A8 / Example unspliced isoform:ACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGGTAATCACTAGAATTAGATCAGCATTACTGTTTACAAGCTCATTGAAATGTAATTCT
AGAGCACCGGCTTTACAATTTATTTACCTGAAATTTTTGGATACAGGCAAAGATCGATCTGAAAATTCAATAGATCTAGACGGGCTTGTGGTTTACAAAGTATTTAAATGAGATTTAAGCATGCAACCTGTGCCGATCTTAGATCTCCATAGATCGGAATTGGGTTGCAATTGGATTAAAAGAAGTTTTACGGTCCCAAT
TATCGGTTGTTTAATTCAACACTAACGCTTTATCCCTGAGGATTGCAGATTGAGATCTTATTCCCTGTTGTAGATTGATTCAATCAAGACTATTTAGATCATTCTTTTGCTGTCTTTTGTTTTATTATGCATTTCTGATGTTGATCTTACTATAATTTATCGATCAAATATGTACGTCAGATTCACCTGGATTAATTGAT
TCATCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGT
TAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACGTAAGTGCATTGATCTTGGCCGTTAGgtatatcacattgttttattttgttatctgattcgactttgggattattagttttcgtgaatctaa
aaaattctcaatgttgtttgccttcgaatttggtagATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGC
TGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTA
TTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCG
ACATATCTGAGAAAATTATATTACTGAATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCATGATCATATTCGCTTAGGTT
AATCTGAAAGTCCCCATCCTGTGCAT
Intron 2 GCAAAGATCG ... TGTACGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60 | 2 | 1 | 5 |
| A2 | 55.56 | 2 | 2 | 3 |
| A3 | 100 | 0 | 2 | 3 |
| A4 | 33.33 | 1 | 1 | 0 |
| A5 | 100 | 0 | 6 | 3 |
| A6 | 55.84 | 17 | 23 | 20 |
| A7 | 55.69 | 37 | 49 | 44 |
| A8 | 63.01 | 27 | 44 | 48 |
| A9 | 58.96 | 55 | 98 | 60 |
| A10 | 60.75 | 52 | 108 | 53 |
>TRINITY_DN46579_c0_g2_i5 from sample A7 / Example spliced isoformTATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGATTCACCTGGATTAATTGATTCA
TCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAA
CAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAG
TACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAA
ATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACA
TTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTT
TTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCATTTCGATTGCAGCACTTAGT
>TRINITY_DN46579_c0_g2_i11 from sample A7 / Example unspliced isoform:TATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGgcaaagatcgatctgaaaattca
atagatctagacgggcttgtggtttacaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggttgcaattggattaaaagaagttttacggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgtt
gtagattgattcaatcaagactatttagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatcaaatatgtacgtcagATTCACCTGGATTAATTGATTCATCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATG
AACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGA
TTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAA
GACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTG
AAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGAT
CGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTA
TATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCATTTCGATTGCAGCACTTAGT
Intron 3 GTATATTACA ... AATTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.42 | 57 | 8 | 18.5 |
| A2 | 24.55 | 50 | 5 | 16.3 |
| A3 | 28.67 | 52 | 2.5 | 21.1 |
| A4 | 17.09 | 40 | 1.5 | 8.5 |
| A5 | 25.82 | 10 | 2.5 | 3.5 |
| A6 | 27.36 | 351.8 | 28.9 | 132.9 |
| A7 | 24.22 | 536 | 33.6 | 173 |
| A8 | 21.82 | 439.2 | 25.5 | 124.3 |
| A9 | 21.22 | 571.7 | 33.3 | 155.5 |
| A10 | 21.71 | 421.2 | 22.5 | 118 |
>TRINITY_DN42951_c0_g1_i3 from sample A6 / Example spliced isoformGTCATAAGGCGTCTTATTTCAACTCCCAGGGTGGAGTAGGGGTAGCAGAATTTATTAAAAAATAAATTTTAACGTGTCAGATTGATTATACTGTGGATATTCTTTGTCTGGTTCATGATCGGAGCATTGAGATTTAATGAAATAACTCATCCGCATGTTTAAATTCAACCAGTCACTAATAATTGTTTTTAAAAATAGAT
TTATTATAGATGGCTGGCAGTTTCAAATAAATGATCATCCACTTGGCATCGGGCTCCTCTTCAATGTAACGCTTACTAACTTCAAGTACTCAACTCCTTGGCCGATTAAGATCCACCACCCACCGTTACATTTTATAGGTTAATAGATGTCTACAATCACTGCCCATCAAGGTGTCGAGGATATCTATCGACGCCCGTTT
GGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAA
GGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGC
TGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGT
ACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAACAATTAAAAATCAT
>TRINITY_DN42951_c0_g1_i4 from sample A6 / Example unspliced isoform:CTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATC
CAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACA
GCCTAAGTGCATTGATCTTGGCCGTTAGgtatattacattgttttattttgttatctgaatcgaactttgggattattagttttcgtgaatctaaaaaattctcaatgttgtttgccttcgaatttggtagATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAG
TACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAA
ATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACA
TTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAACAATTAAAAATCAT
Intron 4 GTAATCACTA ... TGTACGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.47 | 2 | 8 | 5 |
| A2 | 55.56 | 2 | 2 | 3 |
| A3 | 100 | 0 | 0 | 3 |
| A4 | 75 | 1 | 6 | 0 |
| A5 | 100 | 0 | 2 | 3 |
| A6 | 52.11 | 17 | 17 | 20 |
| A7 | 51.32 | 37 | 34 | 44 |
| A8 | 56.1 | 27 | 21 | 48 |
| A9 | 53.19 | 55 | 65 | 60 |
| A10 | 51.63 | 52 | 58 | 53 |
>TRINITY_DN46579_c0_g2_i5 from sample A7 / Example spliced isoformTATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGATTCACCTGGATTAATTGATTCA
TCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAA
CAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAG
TACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAA
ATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACA
TTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTT
TTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCATTTCGATTGCAGCACTTAGT
>TRINITY_DN46579_c0_g2_i14 from sample A7 / Example unspliced isoform:TATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGgtaatcactagaattagatcagc
attactgtttacaagctcattgaaatgtaattctagagcaccggctttacaatttatttacctgaaatttttggatacaggcaaagatcgatctgaaaattcaatagatctagacgggcttgtggtttacaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggtt
gcaattggattaaaagaagttttacggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgttgtagattgattcaatcaagactatttagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatca
aatatgtacgtcagATTCACCTGGATTAATTGATTCATCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGAT
TAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATA
CTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACA
AGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAA
AGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAA
AAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCAT
TTCGATTGCAGCACTTAGT
Intron 5 GTAATCACTA ... TTGGATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.89 | 1 | 8 | 8 |
| A2 | 42.86 | 2 | 2 | 1 |
| A3 | 0 | 2 | 0 | 0 |
| A4 | 75 | 1 | 6 | 0 |
| A5 | 33.33 | 6 | 2 | 4 |
| A6 | 37.84 | 23 | 17 | 11 |
| A7 | 33.08 | 49 | 35.5 | 13 |
| A8 | 26.94 | 44 | 22.5 | 10 |
| A9 | 30.83 | 97.3 | 65.7 | 21 |
| A10 | 27.32 | 110.2 | 55.8 | 27 |
>TRINITY_DN42951_c0_g1_i8 from sample A6 / Example spliced isoformCTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGGCAAAGATCGATCTGAAAATTCAATAGATCTAGACGGGCTTGTGGTTTAC
AAAGTATTTAAATGAGATTTAAGCATGCAACCTGTGCCGATCTTAGATCTCCATAGATCGGAATTGGGTTGCAATTGGATTAAAAGAAGTTTTACGGTCCCAATTATCGGTTGTTTAATTCAACACTAACGCTTTATCCCTGAGGATTGCAGATTGAGATCTTATTCCCTGTTGTAGATTGATTCAATCAAGACTATTTA
GATCATTCTTTTGCTGTCTTTTGTTTTATTATGCATTTCTGATGTTGATCTTACTATAATTTATCGATCAAATATGTACGTCAGATTCACCTGGATTAATTGATTCATCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACAT
CAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTA
TGTTGCAATAACATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATG
AGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCA
ATTTCATTTTATTACTGACTTTCATTTTAAACTGAATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTAC
TGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAACAATTAAAAATCAT
>TRINITY_DN42951_c0_g1_i10 from sample A6 / Example unspliced isoform:CTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGgtaatcactagaattagatcagcattactgtttacaagctcattgaaatg
taattctagagcaccggctttacaatttatttacctgaaatttttggatacagGCAAAGATCGATCTGAAAATTCAATAGATCTAGACGGGCTTGTGGTTTACAAAGTATTTAAATGAGATTTAAGCATGCAACCTGTGCCGATCTTAGATCTCCATAGATCGGAATTGGGTTGCAATTGGATTAAAAGAAGTTTTACGG
TCCCAATTATCGGTTGTTTAATTCAACACTAACGCTTTATCCCTGAGGATTGCAGATTGAGATCTTATTCCCTGTTGTAGATTGATTCAATCAAGACTATTTAGATCATTCTTTTGCTGTCTTTTGTTTTATTATGCATTTCTGATGTTGATCTTACTATAATTTATCGATCAAATATGTACGTCAGATTCACCTGGATT
AATTGATTCATCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTT
TATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAG
TCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTG
AAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGAATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTT
CTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAACAATTAAAAATCAT
Intron 6 GTAAGTGCAT ... AATTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.33 | 10 | 10 | 18 |
| A2 | 51.52 | 8 | 7 | 10 |
| A3 | 48.39 | 8 | 0 | 15 |
| A4 | 36.36 | 14 | 5 | 11 |
| A5 | 66.67 | 1 | 1 | 3 |
| A6 | 47.4 | 91 | 44 | 120 |
| A7 | 34.74 | 216 | 69 | 161 |
| A8 | 30.12 | 203 | 38 | 137 |
| A9 | 33.66 | 203 | 62 | 144 |
| A10 | 29.11 | 218 | 44 | 135 |
>TRINITY_DN44969_c0_g2_i10 from sample A8 / Example spliced isoformACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGGTAATCACTAGAATTAGATCAGCATTACTGTTTACAAGCTCATTGAAATGTAATTCT
AGAGCACCGGCTTTACAATTTATTTACCTGAAATTTTTGGATACAGGCAAAGATCGATCTGAAAATTCAATAGATCTAGACGGGCTTGTGGTTTACAAAGTATTTAAATGAGATTTAAGCATGCAACCTGTGCCGATCTTAGATCTCCATAGATCGGAATTGGGTTGCAATTGGATTAAAAGAAGTTTTACGGTCCCAAT
TATCGGTTGTTTAATTCAACACTAACGCTTTATCCCTGAGGATTGCAGATTGAGATCTTATTCCCTGTTGTAGATTGATTCAATCAAGACTATTTAGATCATTCTTTTGCTGTCTTTTGTTTTATTATGCATTTCTGATGTTGATCTTACTATAATTTATCGATCAAATATGTACGTCAGATTCACCTGGATTAATTGAT
TCATCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGT
TAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATC
AGCATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGCCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAA
GAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGAATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCG
AATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTGAGAAAATTATATTACTGAATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAAACAATTAAAAATCATGGAC
>TRINITY_DN44969_c0_g2_i4 from sample A8 / Example unspliced isoform:ACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGGCAAAGATCGATCTGAAAATTCAATAGATCTAGACGGGCTTGTGGTTTACAAAGTAT
TTAAATGAGATTTAAGCATGCAACCTGTGCCGATCTTAGATCTCCATAGATCGGAATTGGGTTGCAATTGGATTAAAAGAAGTTTTACGGTCCCAATTATCGGTTGTTTAATTCAACACTAACGCTTTATCCCTGAGGATTGCAGATTGAGATCTTATTCCCTGTTGTAGATTGATTCAATCAAGACTATTTAGATCATT
CTTTTGCTGTCTTTTGTTTTATTATGCATTTCTGATGTTGATCTTACTATAATTTATCGATCAAATATGTACGTCAGATTCACCTGGATTAATTGATTCATCCCTCGATCTGCATCTCTAAACTCATTAACAAATCTTAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTT
ATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCA
ATAACgtaagtgcattgatcttggccgttaggtatatcacattgttttattttgttatctgattcgactttgggattattagttttcgtgaatctcaaaaattctcgatgttgtttgccttcgaatttggtagATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGC
AGTACAATTTTGCACCAGTCTGATCAGCATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCC
AAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGAATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATA
CATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTGAGAAAATTATATTACTGAATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAAACAATTAAAAATCATGGAC
Intron 7 GTCAACTTCC ... CATTTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.94 | 4 | 0 | 9 |
| A2 | 60 | 4 | 4 | 8 |
| A3 | 100 | 0 | 2 | 7 |
| A4 | 55.56 | 2 | 3 | 2 |
| A5 | 40 | 3 | 2 | 2 |
| A6 | 59.69 | 26 | 32 | 45 |
| A7 | 78.7 | 23 | 59 | 111 |
| A8 | 80.68 | 17 | 47 | 95 |
| A9 | 74.84 | 40 | 128 | 110 |
| A10 | 76.59 | 24 | 73 | 84 |
>TRINITY_DN43278_c0_g1_i1 from sample A9 / Example spliced isoformATCTCCTCTATCAAGAAACAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGGTATATCACATTGTTTTATTTTGCTATCTGATTCGACTTTGGG
ATTATTAGTTTTCGTGAATCTCAAAAATTCTCAATGTTGTTTGCCTTCGAATTTGGTAG
>TRINITY_DN43278_c0_g1_i13 from sample A9 / Example unspliced isoform:CACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGgtcaacttcccagactggcttgcatgaacatctgctagatattgcgtg
aacatcagggttatccaagatattgcgcatgtttcaattcaatcgtcacttcaagtactcaactccttggccgattaggatacaccacccacggttacattttatagGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAG
GCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAA
GAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTG
TTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTAT
ATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAGGGGTTAACAATTAAAAATCGTG
Intron 8 GTAATCACTA ... TGAACATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 8 | 7 |
| A2 | 55.56 | 2 | 2 | 3 |
| A3 | 33.33 | 4 | 0 | 4 |
| A4 | 75 | 1 | 6 | 0 |
| A5 | 100 | 0 | 2 | 1 |
| A6 | 55.81 | 19 | 17 | 31 |
| A7 | 56.57 | 38 | 36 | 63 |
| A8 | 60.56 | 28 | 23 | 63 |
| A9 | 49.43 | 67 | 66 | 65 |
| A10 | 49.55 | 56 | 55 | 55 |
>TRINITY_DN43278_c0_g1_i8 from sample A9 / Example spliced isoformCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGT
ACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGC
GAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGT
CTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAA
ACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAG
GGGTTAACAATTAAAAATCGTG
>TRINITY_DN43278_c0_g1_i12 from sample A9 / Example unspliced isoform:CACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGgtaatcactagaattagatcagcattactgtttacaagctcattgaaa
tgtaattctagagcaccggctttacaatttatttacctgaaatttttggatacaggcaaagatcgatctgaaaattcaatagatctagacgggcttgtggtttacaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggttgcaattggattaaaagaagttttac
ggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgttgtagattgattcaatcaagactatttagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatcaaatatgtacgtcagattcacctgga
ttaattgattcatccctcgatctgcatctctaaactcattaacaaatcttaggtcaacttcccagactggcttgcatgaacatctgctagatattgcgtgaacatcagGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACAT
TTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACC
AGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTG
TGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGT
TTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAGGGGTTAACAATTAAAAATCGTG
Intron 9 GCAAAGATCG ... CAAATCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 8 |
| A2 | 38.46 | 4 | 2 | 3 |
| A3 | 50 | 2 | 2 | 2 |
| A4 | 14.29 | 3 | 1 | 0 |
| A5 | 63.64 | 2 | 6 | 1 |
| A6 | 41.82 | 32 | 23 | 23 |
| A7 | 48.51 | 58.3 | 49 | 60.8 |
| A8 | 53.57 | 48.1 | 44 | 67 |
| A9 | 37.91 | 127.3 | 97.4 | 58 |
| A10 | 52.81 | 74.1 | 109.9 | 56 |
>TRINITY_DN42951_c0_g1_i6 from sample A6 / Example spliced isoformCTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAA
CATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGC
CTATGTTGCAATAACATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGA
ATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTT
TCAATTTCATTTTATTACTGACTTTCATTTTAAACT
>TRINITY_DN42951_c0_g1_i8 from sample A6 / Example unspliced isoform:CTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGgcaaagatcgatctgaaaattcaatagatctagacgggcttgtggtttac
aaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggttgcaattggattaaaagaagttttacggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgttgtagattgattcaatcaagactattta
gatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatcaaatatgtacgtcagattcacctggattaattgattcatccctcgatctgcatctctaaactcattaacaaatcttagGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACAT
CAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTA
TGTTGCAATAACATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATG
AGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCA
ATTTCATTTTATTACTGACTTTCATTTTAAACTGAATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTAC
TGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAACAATTAAAAATCAT
Intron 10 GTAATCACTA ... AACTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.89 | 1 | 8 | 8 |
| A2 | 33.33 | 4 | 2 | 2 |
| A3 | 33.33 | 2 | 0 | 2 |
| A4 | 50 | 3 | 6 | 0 |
| A5 | 42.86 | 2 | 2 | 1 |
| A6 | 40.13 | 31.3 | 17 | 25 |
| A7 | 43.29 | 67.7 | 35.3 | 68 |
| A8 | 49.17 | 45.7 | 22.3 | 66 |
| A9 | 32.12 | 130.7 | 65.7 | 58 |
| A10 | 43.52 | 72.7 | 56 | 56 |
>TRINITY_DN46579_c0_g2_i6 from sample A7 / Example spliced isoformTATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGACTGGCTTGCATGAACATCTGCT
AGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCA
GGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAA
TTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGA
GGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTT
AAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCAT
GATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCATTTCGATTGCAGCACTTAGT
>TRINITY_DN46579_c0_g2_i14 from sample A7 / Example unspliced isoform:TATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGgtaatcactagaattagatcagc
attactgtttacaagctcattgaaatgtaattctagagcaccggctttacaatttatttacctgaaatttttggatacaggcaaagatcgatctgaaaattcaatagatctagacgggcttgtggtttacaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggtt
gcaattggattaaaagaagttttacggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgttgtagattgattcaatcaagactatttagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatca
aatatgtacgtcagattcacctggattaattgattcatccctcgatctgcatctctaaactcattaacaaatcttaggtcaacttcccagACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGAT
TAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATA
CTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACA
AGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAA
AGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAA
AAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCAT
TTCGATTGCAGCACTTAGT
Intron 11 GTAAGTGCGT ... TGGCCGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.33 | 11 | 47.5 | 54.5 |
| A2 | 80.63 | 11 | 42 | 49 |
| A3 | 84.18 | 8.5 | 42 | 48 |
| A4 | 76.91 | 11 | 33 | 39 |
| A5 | 100 | 0 | 9 | 10 |
| A6 | 80.35 | 77.5 | 288.5 | 340 |
| A7 | 74.72 | 166.3 | 436.5 | 517 |
| A8 | 69.81 | 168.3 | 336.3 | 418 |
| A9 | 77.26 | 157.8 | 483 | 554 |
| A10 | 69 | 172.3 | 336.5 | 401.5 |
>TRINITY_DN46579_c0_g2_i8 from sample A7 / Example spliced isoformGGTAACTCTTACTAACTTCAAGTCCTCAACTCCTTGGCCGATTAGGATCCACCACCCACCGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTCGAGGATCTCTATTGACGCCCATTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCATACGTTGCAACAGCATATTCAATAGGGATA
TGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCCAAGAAAAGGAGATCAACAGCTGCCTTCGAAGAAGGCTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACAAGAAGGTCT
CCGGCCAACACACGGGGGCTGCGGCCAAAAGAATCGTATTGTGCAGACAAGAACTGAAGCGTCCGCGTTAATGGCTCTGGAAGTTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGAATTCGGTAAAGATCAAACA
GTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGT
TAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCATTTCGATTGCA
GCACTTAGT
>TRINITY_DN46579_c0_g2_i9 from sample A7 / Example unspliced isoform:GGTAACTCTTACTAACTTCAAGTCCTCAACTCCTTGGCCGATTAGGATCCACCACCCACCGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTCGAGGATCTCTATTGACGCCCATTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCATACGTTGCAACAGCgtaagtgcgttgatct
tggccgtcagATATTCAATAGGGATATGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCCAAGAAAAGGAGATCAACAGCTGCCTTCGAAGAAGGCTAAGAATGGGATGATCAATTCATCTACTCGATGGA
TGGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGCGGCCAAAAGAATCGTATTGTGCAGACAAGAACTGAAGCGTCCGCGTTAATGGCTCTGGAAGTTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTT
AAACTGAATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTAT
AAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCT
CAGAACGAGACTGCATTTCGATTGCAGCACTTAGT
Intron 12 GCAAAGATCG ... AACTTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.82 | 1 | 1 | 8 |
| A2 | 33.33 | 4 | 2 | 2 |
| A3 | 50 | 2 | 2 | 2 |
| A4 | 14.29 | 3 | 1 | 0 |
| A5 | 63.64 | 2 | 6 | 1 |
| A6 | 43.44 | 31.3 | 23 | 25 |
| A7 | 46.34 | 67.8 | 49 | 68 |
| A8 | 54.73 | 45.5 | 44 | 66 |
| A9 | 37.3 | 130.5 | 97.3 | 58 |
| A10 | 53.32 | 72.8 | 110.3 | 56 |
>TRINITY_DN46579_c0_g2_i6 from sample A7 / Example spliced isoformTATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGACTGGCTTGCATGAACATCTGCT
AGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCA
GGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAAGACTGCCAAA
TTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTGAAGATCTTGA
GGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTT
AAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTATATATATCAT
GATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCATTTCGATTGCAGCACTTAGT
>TRINITY_DN46579_c0_g2_i11 from sample A7 / Example unspliced isoform:TATTAATGTGCCAAGTGTAGGTCTCCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGgcaaagatcgatctgaaaattca
atagatctagacgggcttgtggtttacaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggttgcaattggattaaaagaagttttacggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgtt
gtagattgattcaatcaagactatttagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatcaaatatgtacgtcagattcacctggattaattgattcatccctcgatctgcatctctaaactcattaacaaatcttaggtcaacttcccagACTGGCTTGCATG
AACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATCTCTATCGACGCCCGTTTGGTGCCAGA
TTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGATATTCAATAGAGATATGGAAGCCTAGACATACTGTGGCGAAGGTCTATTCATGTTGAGACTCCAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCAAAGAAAAGGAGAAGAA
GACTGCCAAATTTATGGACGATCAACAGCTGCCTTCAAAGAAGACTAAGAATGGGATGATCAATTCATCTACTCGATGGATGGAGGAGGAGTCAACAAGAAGGTCTCCGGCCAACACACGGGGGCTGAGGCCAAATGAATCGTATCTGTGTAGACAAAAACTGAGGTGTCCGCAGTAATGGCTCTCGAAGCTGATACCTG
AAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTAGATTCGGTAAAGATCAAATAGTGTTTGACAGATCCAAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGAT
CGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAGGGGGTTAACAATTAAAAATCATGTATCATTTTTTTACTTGGGTCAACCGAATATTTAGGGGATCGCCGATGTGGCGTTCTCATCCGGTGTCTAAACTA
TATATATCATGATCATATTCCCTTGGGTTAATCTGAATGTCCTCATCCTGTGCGTATGAATCATTTTTAAATTGGTTAGCTCAGAACGAGACTGCATTTCGATTGCAGCACTTAGT
Intron 13 GCAAAGATCG ... TGAACATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 7 |
| A2 | 55.56 | 2 | 2 | 3 |
| A3 | 42.86 | 4 | 2 | 4 |
| A4 | 33.33 | 1 | 1 | 0 |
| A5 | 100 | 0 | 6 | 1 |
| A6 | 58.7 | 19 | 23 | 31 |
| A7 | 59.57 | 38 | 49 | 63 |
| A8 | 65.64 | 28 | 44 | 63 |
| A9 | 54.73 | 67 | 97 | 65 |
| A10 | 59.71 | 56 | 111 | 55 |
>TRINITY_DN43278_c0_g1_i8 from sample A9 / Example spliced isoformCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGT
ACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGC
GAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGT
CTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAA
ACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAG
GGGTTAACAATTAAAAATCGTG
>TRINITY_DN43278_c0_g1_i11 from sample A9 / Example unspliced isoform:CACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGgcaaagatcgatctgaaaattcaatagatctagacgggcttgtggttt
acaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggttgcaattggattaaaagaagttttacggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgttgtagattgattcaatcaagactatt
tagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatcaaatatgtacgtcagattcacctggattaattgattcatccctcgatctgcatctctaaactcattaacaaatcttaggtcaacttcccagactggcttgcatgaacatctgctagatattgcgtgaac
atcagGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCC
TATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAA
TGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTT
CAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATT
ACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAGGGGTTAACAATTAAAAATCGTG
Intron 14 GTAATCACTA ... CAAATCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 8 | 8 |
| A2 | 38.46 | 4 | 2 | 3 |
| A3 | 33.33 | 2 | 0 | 2 |
| A4 | 50 | 3 | 6 | 0 |
| A5 | 42.86 | 2 | 2 | 1 |
| A6 | 38.46 | 32 | 17 | 23 |
| A7 | 45.19 | 58.1 | 35.1 | 60.7 |
| A8 | 48.01 | 48.3 | 22.1 | 67 |
| A9 | 32.7 | 127.1 | 65.6 | 58 |
| A10 | 43.05 | 74.3 | 56.3 | 56 |
>TRINITY_DN42951_c0_g1_i6 from sample A6 / Example spliced isoformCTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAA
CATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGC
CTATGTTGCAATAACATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGA
ATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTT
TCAATTTCATTTTATTACTGACTTTCATTTTAAACT
>TRINITY_DN42951_c0_g1_i10 from sample A6 / Example unspliced isoform:CTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAATGTTGTTATATCTCCTCTATCAAGAAACAGgtaatcactagaattagatcagcattactgtttacaagctcattgaaatg
taattctagagcaccggctttacaatttatttacctgaaatttttggatacaggcaaagatcgatctgaaaattcaatagatctagacgggcttgtggtttacaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggttgcaattggattaaaagaagttttacgg
tcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgttgtagattgattcaatcaagactatttagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatcaaatatgtacgtcagattcacctggatt
aattgattcatccctcgatctgcatctctaaactcattaacaaatcttagGTCAACTTCCCAGACTGGCTTGCATGAACATCTGCTAGATATTGCGTGAACATCAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTT
TATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCATAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAG
TCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTG
AAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGAATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTT
CTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTCTGGATCACAAAAAAAGGGGTTAACAATTAAAAATCAT
Intron 15 GTAATCACTA ... CATTTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.19 | 4 | 8 | 10 |
| A2 | 55.56 | 4 | 2 | 8 |
| A3 | 100 | 0 | 0 | 7 |
| A4 | 66.67 | 2 | 6 | 2 |
| A5 | 42.73 | 3 | 2 | 2.5 |
| A6 | 57.79 | 26 | 17 | 55 |
| A7 | 76.41 | 23 | 36 | 113 |
| A8 | 77.92 | 17 | 23 | 97 |
| A9 | 69.45 | 40 | 66 | 116 |
| A10 | 74.26 | 24 | 55 | 83.5 |
>TRINITY_DN43278_c0_g1_i1 from sample A9 / Example spliced isoformATCTCCTCTATCAAGAAACAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAACAGCCTAAGTGCATTGATCTTGGCCGTTAGGTATATCACATTGTTTTATTTTGCTATCTGATTCGACTTTGGG
ATTATTAGTTTTCGTGAATCTCAAAAATTCTCAATGTTGTTTGCCTTCGAATTTGGTAG
>TRINITY_DN43278_c0_g1_i12 from sample A9 / Example unspliced isoform:CACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGgtaatcactagaattagatcagcattactgtttacaagctcattgaaa
tgtaattctagagcaccggctttacaatttatttacctgaaatttttggatacaggcaaagatcgatctgaaaattcaatagatctagacgggcttgtggtttacaaagtatttaaatgagatttaagcatgcaacctgtgccgatcttagatctccatagatcggaattgggttgcaattggattaaaagaagttttac
ggtcccaattatcggttgtttaattcaacactaacgctttatccctgaggattgcagattgagatcttattccctgttgtagattgattcaatcaagactatttagatcattcttttgctgtcttttgttttattatgcatttctgatgttgatcttactataatttatcgatcaaatatgtacgtcagattcacctgga
ttaattgattcatccctcgatctgcatctctaaactcattaacaaatcttaggtcaacttcccagactggcttgcatgaacatctgctagatattgcgtgaacatcagggttatccaagatattgcgcatgtttcaattcaatcgtcacttcaagtactcaactccttggccgattaggatacaccacccacggttacat
tttatagGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACC
AGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTG
TGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGT
TTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAGGGGTTAACAATTAAAAATCGTG
Intron 16 GTCAACTTCC ... TGAACATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 1 |
| A2 | 66.67 | 2 | 4 | 4 |
| A3 | 50 | 4 | 2 | 6 |
| A4 | 60 | 1 | 3 | 0 |
| A5 | 100 | 0 | 2 | 1 |
| A6 | 63.46 | 19 | 32 | 34 |
| A7 | 60.62 | 38 | 59 | 58 |
| A8 | 64.33 | 28 | 47 | 54 |
| A9 | 63.09 | 67 | 128 | 101 |
| A10 | 52.74 | 56 | 73 | 52 |
>TRINITY_DN43278_c0_g1_i8 from sample A9 / Example spliced isoformCACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGT
ACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAGGCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGC
GAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAAGAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGT
CTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTGTTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAA
ACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTATATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAG
GGGTTAACAATTAAAAATCGTG
>TRINITY_DN43278_c0_g1_i13 from sample A9 / Example unspliced isoform:CACTCTTACACTTACTCCTTGAACGGCTCAGCTCCACTCCTACTCGGCTACGCTGTAAGATTGCTCAGCTCCACTCCGCACGACTGCTCAGCACCCAAATTGGTAGTGTAACACTCAAACAGTGTTGTTATATCTCCTCTATCAAGAAACAGgtcaacttcccagactggcttgcatgaacatctgctagatattgcgtg
aacatcagGGTTATCCAAGATATTGCGCATGTTTCAATTCAATCGTCACTTCAAGTACTCAACTCCTTGGCCGATTAGGATACACCACCCACGGTTACATTTTATAGGTTAACAGATGTCTACAATCACTGCCCATCAAGGTGTGGAGGATATCTATCGACGCCCGTTTGGTGCCAGATTCGGCTGCAGGAGTATATCAG
GCCTATGTTGCAATAACATATTCAATAGAGATATGGAAGCGTAGACATACTGTGGCGAAGGTCTATTAATGTTGAGGCTCTAGCAGTACAATTTTGCACCAGTCTGATCAGTATTGGGATGGTCGTGAACCAAGCGAAGAAAAGGAGAACAAGAATGTCAAATTTATGGACGATCAACAGCTGTCTTCGAAAAAGACTAA
GAATGAGATGATCAATTCATCTACTCGATGGATTGAGGAGGAGTCAACAAGAAGGTCTTCGGCCAACACACGGGGGTTGCGGCCAAATGAATCGTATCTGTGAAGACAAGAACTGAGGCGTCCGCGGTAATGGCTCTGGAAGCTGATACCTGAAGATCTTGAGGATATAGATATGCATTTATTTTAAAGATCAAACAGTG
TTTCAATTTCATTTTATTACTGACTTTCATTTTAAACTGGATTCGGTAAAGATCAAACAGTGTTTGACAGATCCCAGAAAAATACATTACTGTATGCCGTTTCTTTTCGAATTCTTGAATTATTTTATGGATTACAAAGCTGTACTGAAGATCGATTTCTTTAAGTTATTTAAGTTGTTCGACATATCTCAGAAAATTAT
ATTACTGTATGCCGATTCAATTCTTGAATCTATAAATTATCGATCACAAAAAAAAGGGGTTAACAATTAAAAATCGTG