sp|Q8LGU6|CD27B_ARATH ----> Cell division cycle protein 27 homolog B
Intron 1 GTATGCTTTG ... TCTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.36 | 46 | 9 | 1.7 |
| A2 | 13.16 | 33 | 5 | 4.8 |
| A3 | 28.38 | 53 | 21 | 9.2 |
| A4 | 7.89 | 35 | 3 | 5.1 |
| A5 | 10 | 18 | 2 | 6.8 |
| A6 | 22.92 | 37 | 11 | 7.8 |
| A7 | 13.11 | 53 | 8 | 12.5 |
| A8 | 33.33 | 44 | 22 | 13.6 |
| A9 | 22.73 | 51 | 15 | 8.5 |
| A10 | 18.92 | 30 | 7 | 6.1 |
>TRINITY_DN119628_c0_g1_i12 from sample A2 / Example spliced isoformAAATATATGAGAAAATTTGAAATGAAATGATCAGTGACGTAGTATTCCGGAAAAGAGGGTTCGATTTCAAGTAAAGAGGACCAGAGGTTTCTGCCAAAGGCTCATGGTCGCAGCAGCCTTGATCTCACTTGGATCTCCATAACAGCAAGGAAAAGTCATAGCATTTGTATATCTTCAGAGATCTTGGTGGCTGTAGTTTC
TGGGTGTTCTTGCTGGTTTCCTGCGATTCAAATAGGCGACATACGCATACTTTGGTAGTTATTGGCCGTTTTTACTAATGAATCATGGAGTCCCGAATGGTGGAATGCGTGAACTATAGCCTTCGCCAATACATGTACAGCAATGCTATTTTTATTGGCGAACGACTCTGTGCCGAATACCCTTCCGAGAAGAACTCTCA
ATTATTGGCAAGCTGTTACTTGCGTAACAATCAAGCTTATCGTGCATACAACATCTTAAAAGGGACTCAATCTGCACAATCCCGTTATTTATTTGCACTAGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCGTTATGTCCTCTCAATGAACCTAGCACAGAGGTTCCAAATGGTGCAGCTGGTCATTATC
TGCTTGGAAAAATATACAGGTATACTGATAGAAGAAAAATTGCGATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCTCTTCTTTGGGCTGCATATGAAGAGTTGTGCATCTTAGGTGCTGAAGAAGAAGCAGCTGAACTTTATGGTGATTCAGCTGTTTTTCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCC
CAATATTTGCCATCAGCTGCTGATGACCGTAATATGCCATCTAGCCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAAATACCTGGGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGTTTCAGGGGCTGGGAATATAACACTTCATAGTACACCATTTTCAATGAACATGTCAGCATACAA
CACCCCTTCTCCAGTTCCCTCACAAGTCGCTACAGCAGCTCCACCACCATTGAACAGAAATGTACAAGGTCAGCAAAATCCTACTGTGATGGCTGGAGAGGTTTCACCAAGGTCAAATGTCAATGCTCCGGGTCAAGCACCAAGGAGGAAGTTTATGGATGAAGGAAAATTAAGAAAGAGCATCCGATCATCTTCCACAC
GTGCTGCATACTCTCAGGTTTCAGGAAGGTTATTTTCTGAAACCGGACCACGCAGAAGTACAAGGCTTTCAGGAGATGCAACAATACCAGTTAGCTCATCTGTGTTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTTCCTGGAGGTCTGTCTTCAACAACCAAAATGAATGCATCGAGCTCTCTTCGC
TCAGGCACTGTTCGTAAAGGGCATTCATTGGCTTTAGACAGTAGTTACGAAGATGGTAAAAAATATGAAGCTTTGGAAGACTCTGGGCCAGAAGATGTAGCATTTAATTCTTCTCGGCGTGCTGGATCAGTTGTAATGGATGACGAGCCTCGTATGCGTAACAGATCAAGTGGTTTAATAGGTCGTAGTTCAAGGGTTGC
AGAGGGTTCTTTGGAGCTTTTAGGACTTTTGCGAGTTCTTGGAGAAGCATTCAGGCATTGTTGCATGCATCGATGCAAGGAGGCTCTGGAAGTCTTTTGTAAACTTCCACATCATCAGTATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAACGTGCCTTTA
TTTGGGCTCGTCGTGTCTCTCCTTACTATCTAGAAGGAATGGATATCTACTCCACAGTTCTTTATCACATGAAGGAGGAGATGAAGCTGAGTTACTTAGCTCAGGAATTGAATGCAATTGATCGTTTATCTCCTCAAGCTTGGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACT
TTTCAACGAGCCATACAACTTGATTCACGTTTTACATATGCTCATACACTTTGTGGTCACGAATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCACTGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCA
TCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTCTAATGTGTTACCTCGGGATGGCGTTGCATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTT
TAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTAATTGGTAAAATTTACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATC
GAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTTAGCGTCAACCCCAACATCTATCAATCTGTTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTCCTGGGAAATTACCGGTATCCAGCACTAATGATACCTGT
ACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAGAATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGC
CAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATGTATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGC
>TRINITY_DN119628_c0_g1_i14 from sample A2 / Example unspliced isoform:TGCAAAAATTAATTTGATGTTTTGTTGATAATGGGAATAATTCTATGCAGGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGAGCCATACAACTTGATTCACGTTTTACATATGCTCATACACTTTGTGGTCACGAgtatgctttgacatgaattattctgttcct
gcaaatagtttaatgcttacttattcattacctgtggcgtttgcattattcaattaaattcttttacagATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCACTGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTG
CGGAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTCTAATGTGTTACCTCGGGATGGCGTTGCATGCTCTAA
Intron 2 GTGATTTTTT ... CTCTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.66 | 45.5 | 0 | 21 |
| A2 | 26.9 | 17 | 0 | 6 |
| A3 | 30 | 23 | 0 | 9 |
| A4 | 18.98 | 30 | 0 | 7 |
| A5 | 0 | 14.5 | 0 | 0 |
| A6 | 21.96 | 32 | 0 | 9 |
| A7 | 7.67 | 49.5 | 0 | 4 |
| A8 | 6.54 | 43 | 2 | 3 |
| A9 | 17.48 | 71 | 0 | 15 |
| A10 | 24.15 | 41 | 0 | 13 |
>TRINITY_DN42301_c0_g1_i4 from sample A8 / Example spliced isoformTTCCGGAAAAGAGGGTTCGATTTCAAGTAAAGAGGACCAGAGGTTTCTGCCAAAGGCTCATGGTCGCAGCAGCCTTGATCTCACTTGGATCTCCATAACAGCAAGGAAAAGTCATAGCATTTGTATATCTTCAGAGATCTTGGTGGCTGTAGTTTCTGGGTGTTCTTGCTGGTTTCCTGCGATTCAAATAGGCGACATAC
GCATACTTTGGTAGTTATTGGCCGTTTTTACTAATGAATCATGGAGTCCCGAATGGTGGAATGCGTGAACTATAGCCTTCGCCAATACATGTACAGCAATGCTATTTTTATTGGCGAACGACTCTGTGCCGAATACCCTTCCGAGAAGAACTCTCAATTATTGGCAAGCTGTTACTTACGTAACAATCAAGCTTATCGTG
CATACAACATCTTAAAAGGGACTCAATCTGCACAATCCCGTTATTTATTTGCACTAGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCGTTATGTCCTCTCAATGAACCTAGCACAGAGGTTCCAAATGGTGCAGCTGGTCATTATCTGCTTGGAAAAATATACAGGTATACTGATAGAAGAAAAATTGCG
ATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCTCTTCTTTGGGCTGCATATGAAGAGTTGTGCATCTTAGGTGCTGAAGAAGAAGCAGCTGAACTTTATGGTGATTCAGCTGTTTTTCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCCCAATATTTGCCATCAGCTGCTGATGACCGTAATATGCCATCTAG
CCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAAATACCTGGGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGTTTCAGGGGCTGGGAATATAACACTTCATAGTACACCATTTTCAATGAACATGTCAGCATACAACACCCCTTCTCCAGTTCCCTCACAAGTCGCTACAGCAGCTCCAC
CACCATTGAACAGAAATGTACAAGGTCAGCAAAATCCTACTGTGATGGCTGGAGAGGTTTCACCAAGGTCAAATGTCAATGCTCCGGGTCAAGCACCAAGGAGGAAGTTTATGGATGAAGGAAAATTAAGAAAGAGCATCCGATCATCTTCCACACGTGCTGCATACTCTCAGGTTTCAGGAAGGTTATTTTCTGAAACC
GGACCACGCAGAAGTACAAGGCTTTCAGGAGATGCAACAATACCAGTTAGCTCATCTGTGTTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTTCCTGGAGGTCTGTCTTCAACAACCAAAATGAATGCATCGAGCTCTCTTCGCTCAGGCACTGTTCGTAAAGGGCATTCATTGGCTTTAGACAGTAG
TTACGAAGATGGTAAAAAATATGAAGCTTTGGAAGACTCTGGGCCAGAAGATGTAGCATTTAATTCTTCTCGGCGTGCTGGATCAGTTGTAATGGATGACGAGCCTCGTATGCGTAACAGATCAAGTGGTTTAATAGGTCGTAGTTCAAGGGTTGCAGAGGGTTCTTTGGAGCTTTTAGGACTTTTGCGAGTTCTTGGAG
AAGCATTCAGGCATTGTTGCATGCATCGATGCAAGGAGGCTCTGGAAGTCTTTTGTAAACTTCCACATCATCAGTATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAACGTGCCTTTATTTGGGCTCGTCGTGTCTCTCCTTACTATCTAGAAGGAATGGAT
ATCTACTCCACAGTTCTTTATCACATGAAGGAGGAGATGAAGCTGAGTTACTTAGCTCAGGAATTGAATGCAATTGATCGTTTATCTCCTCAAGCTTGGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGAGCCATACAACTTGATTCACGTTTTACATATGCTCA
TACACTTTGTGGTCACGAATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCACTGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTC
TAATGTGTTACCTCGGGATGGCGTTGCATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGT
AGTGTCTACTCTCTAATTGGTAAAATTTACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTT
AGCGTCAACCCCAACATCTATCAATCTGTTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTTCTGGGAAATTACCGGTATCCAGCACTAATGATACCTGTACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAG
AATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATG
TATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAAT
CTGGTAAAATCAGGAGGTGGGAGGTTGACTTACCTGGGCTTTTAGTTGGGCAGCTATAAATATTGAATTACATACATTTCTCTACTAACACAAACCCATAAGTACAATGAACG
>TRINITY_DN42301_c0_g1_i3 from sample A8 / Example unspliced isoform:TCCTCGCCATTACAATGCCTGgtgattttttgatatagtacttttattatttcaaagtaaatgagaggaagcttagtgtaggaacaatttgtgtttctttatgcaaagcttgggatctataggattttgaaagtcactgttctctgttcagGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCG
GAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTCTAATGTGTTACCTCGGGATGGCGTTGCATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGA
TGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTAATTGGTAAAATTTACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATG
ATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTTAGCGTCAACCCCAACATCTATCAATCTGTTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTTCTGGGAAATTACCGGTATCCAGCACTAATGATA
CCTGTACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAGAATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAA
ATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATGTATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTA
TGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAATCTGGTAAAATCAGGAGGTGGGAGGTTGACTTACCTGGGCTTTTAGTTGGGCAGCTATAAATATTGAATTACATACATTTCTCTACTAACACAAACCCATAAGTACAATGAACG
Intron 3 GTATGTTCTA ... TTCTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.95 | 31.8 | 1 | 10 |
| A2 | 27.14 | 10.8 | 0.8 | 4 |
| A3 | 23 | 33.5 | 1.5 | 10 |
| A4 | 15.79 | 32 | 0.8 | 6 |
| A5 | 0 | 4 | 0 | 0 |
| A6 | 31.82 | 30 | 0 | 14 |
| A7 | 12.9 | 54 | 5.3 | 8 |
| A8 | 27.66 | 34 | 0 | 13 |
| A9 | 21.43 | 33 | 1.5 | 9 |
| A10 | 20.45 | 35 | 5 | 9 |
>TRINITY_DN40311_c0_g2_i2 from sample A7 / Example spliced isoformGTGACGTAGTATTCCGGAAAAGAGGGTTCGATTTCAAGTAAAGAGGACCAGAGGTTTCTGCCAAAGGCTCATGGTCGCAGCAGCCTTGATCTCACTTGGATCTCCATAACAGCAAGGAAAAGTCATAGCATTTGTATATCTTCAGAGATCTTGGTGGCTGTAGTTTCTGGGTGTTCTTGCTGGTTTCCTGCGATTCAAAT
AGGCGACATACGCATACTTTGGTAGTTATTGGCCGTTTTTACTAATGAATCATGGAGTCCCGAATGGTGGAATGCGTGAACTATAGCCTTCGCCAATACATGTACAGCAATGCTATTTTTATTGGCGAACGACTCTGTGCCGAATACCCTTCCGAGAAGAACTCTCAATTATTGGCAAGCTGTTACTTGCGTAACAATCA
AGCTTATCGTGCATACAACATCTTAAAAGGGACTCAATCTGCACAATCCCGTTATTTATTTGCACTAGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCGTTATGTCCTCTCAATGAACCTAGCACAGAGGTTCCAAATGGTGCAGCTGGTCATTATCTGCTTGGAAAAATATACAGGTATACTGATAGAA
GAAAAATTGCGATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCTCTTCTTTGGGCTGCATATGAAGAGTTGTGCATCTTAGGTGCTGAAGAAGAAGCAGCTGAACTTTATGGTGATTCAGCTGTTTTTCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCCCAATATTTGCCATCAGCTGCTGATGACCGTAAT
ATGCCATCTAGCCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAAATACCTGGGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGTTTCAGGGGCTGGGAATATAACACTTCATAGTACACCATTTTCAATGAACATGTCAGCATACAACACCCCTTCTCCAGTTCCCTCACAAGTCGCTAC
AGCAGCTCCACCACCATTGAACAGAAATGTACAAGGTCAGCAAAATCCTACTGTGATGGCTGGAGAGGTTTCACCAAGGTCAAATGTCAATGCTCCGGGTCAAGCACCAAGGAGGAAGTTTATGGATGAAGGAAAATTAAGAAAGGTTTCAGGAAGGTTATTTTCTGAAACCGGACCACGCAGAAGTACAAGGCTTTCAG
GAGATGCAACAATACCAGTTAGCTCATCTGTGTTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTTCCTGGAGGTCTGTCTTCAACAACCAAAATGAATGCATCGAGCTCTCTTCGCTCAGGCACTGTTCGTAAAGGGCATTCATTGGCTTTAGACAGTAGTTACGAAGATGGTAAAAAATATGAAGCT
TTGGAAGACTCTGGGCCAGAAGATGTAGCATTTAATTCTTCTCGGCGTGCTGGATCAGTTGTAATGGATGACGAGCCTCGTATGCGTAACAGATCAAGTGGTTTAATAGGTCGTAGTTCAAGGGTTGCAGAGGGTTCTTTGGAGCTTTTAGGACTTTTGCGAGTTCTTGGAGAAGCATTCAGGCATTGTTGCATGCATCG
ATGCAAGGAGGCTCTGGAAGTCTTTTGTAAACTTCCACATCATCAGTATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAACGTGCCTTTATTTGGGCTCGTCGTGTCTCTCCTTACTATCTAGAAGGAATGGATATCTACTCCACAGTTCTTTATCACATGA
AGGAGGAGATGAAGCTGAGTTACTTAGCTCAGGAATTGAATGCAATTGATCGTTTATCTCCTCAAGCTTGGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGAGCCATACAACTTGATTCACGTTTTACATATGCTCATACACTTTGTGGTCACGAATATGTTGCA
ATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCACTGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTCTAATGTGTTACCTCGGGATGGCGTTGCA
TGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTAATTGGTAAAATTT
ACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTTAGCGTCAACCCCAACATCTATCAATCTG
TTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTCCTGGGAAATTACCGGTATCCAGCACTAATGATACCTGTACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAGAATGAAGGCCACATTGGCTTTTGTTGTT
AACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATGTATGCAACTGCAGTGTAACTAATTTGGT
TGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAATCTGGTAAAATCAGGAGGTGGGAGGTTGA
CTTACCTGGGCTTTTAGTTGGGCAGCTATAAATATTGAATTACATACATTTCTCTACTAACACAAACCCATAAGTACAATGAACG
>TRINITY_DN40311_c0_g2_i1 from sample A7 / Example unspliced isoform:GGTTGAGTGTTTAACTTCTATATTATGTGTTTTCAATCTTTTGATTCTTGAATGCATCATTGGATATAGAGCAATATGATGACATACAATGTACTAGATAGGTGGATAGGCAAAATATTTGAGAGTAAATGCCAATTCCGCAGCCCCTTTACGCATCTAGGATAATCTACATGTATTGCAGCACATGAAGGAGGAGATGA
AGCTGAGTTACTTAGCTCAGGAATTGAATGCAATTGATCGTTTATCTCCTCAAGCTTGgtatgttctattataatactttagaaataataatctttttttcttggaaaccaaatttatgttattatgaatttcctttatagtcgtaggatttttagatttttatctacatgacgtaaatgcttttgaattgggacagtgg
tgaaagtctttggtatatgttaccaaaggttattaagctctttttttattaatatcataagcttttttaaacatgaactgcaaaaattaatttgatgttttgttgataatgggaataattctatgcagGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGAGCCAT
ACAACTTGATTCACGTTTTACATATGCTCATACACTTTGTGGTCACGAGTATGCTTTGACATGAATTATTCTGTTCCTGCAAATAGTTTAATGCTTACTTATTCATTACCTGTGGCGTTTGCATTATTCAATTAAATTCTTTTACAGATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCAC
TGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTCTAATGTGTTACCTCGGGATGGCGTTGCATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAA
GCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTAATTGGTAAAATTTACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGG
TCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTTAGCGTCAACCCCAACATCTATCAATCTGTTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCT
CTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTCCTGGGAAATTACCGGTATCCAGCACTAATGATACCTGTACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAGAATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCT
TTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATGTATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACT
CAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAATCTGGTAAAATCAGGAGGTGGGAGGTTGACTTACCTGGGCTTTTAGTTGGGCAGCTATAAATATTGAATTAC
ATACATTTCTCTACTAACACAAACCCATAAGTACAATGAACG
Intron 4 GTAAGTCTTT ... ACTGTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.65 | 8 | 25.4 | 28 |
| A2 | 75.28 | 7 | 21.6 | 22 |
| A3 | 94.57 | 1 | 20.6 | 15 |
| A4 | 85.56 | 1 | 8.6 | 4 |
| A5 | 89.89 | 1 | 7.8 | 10 |
| A6 | 79.14 | 23 | 67 | 108 |
| A7 | 76.99 | 17 | 53.2 | 62 |
| A8 | 71.28 | 41 | 78 | 126 |
| A9 | 76.08 | 31 | 75.6 | 122.2 |
| A10 | 85.54 | 8 | 43.2 | 52 |
>TRINITY_DN40514_c0_g1_i5 from sample A6 / Example spliced isoformCTATCAGTCCAATCCATACAGCTACGACCGAAGTGTACCATGTGAAGAATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAAT
GGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATGTATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATG
CTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAATCTGGTAAAATCAGGAGGTGGGAGGTTGACTTACCTGGGCTTTTAGTTGGGCAGCTATAAATATTGAATTACACACATTTCTCTACTAACACAAACCCATAAGTACAATGAAC
>TRINITY_DN40514_c0_g1_i1 from sample A6 / Example unspliced isoform:GTAGTATTCCGGAAAAGAGGGTTCGATTTCAAGTAAAGAGGACCAGAGGTTTCTGCCAAAGGCTCATGGTCGCAGCAGCCTTGATCTCACTTGGATCTCCATAACAGCAAGGAAAAGTCATAGCATTTGTATATCTTCAGAGATCTTGGTGGCTGTAGTTTCTGGGTGTTCTTGCTGGTTTCCTGCGATTCAAATAGGCG
ACATACGCATACTTTGGTAGTTATTGGCCGTTTTTACTAATGAATCATGGAGTCCCGAATGGTGGAATGCGTGAACTATAGCCTTCGCCAATACATGTACAGCAATGCTATTTTTATTGGCGAACGACTCTGTGCCGAATACCCTTCCGAGAAGAACTCTCAATTATTGGCAAGCTGTTACTTGCGTAACAATCAAGCTT
ATCGTGCATACAACATCTTAAAAGGGACTCAATCTGCACAATCCCGTTATTTATTTGCACTAGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCGTTATGTCCTCTCAATGAACCTAGCACAGAGGTTCCAAATGGTGCAGCTGGTCATTATCTGCTTGGAAAAATATACAGGTATACTGATAGAAGAAAA
ATTGCGATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCTCTTCTTTGGGCTGCATATGAAGAGTTGTGCATCTTAGGTGCTGAAGAAGAAGCAGCTGAACTTTATGGTGATTCAGCTGTTTTTCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCCCAATATTTGCCATCAGCTGCTGATGACCGTAATATGCC
ATCTAGCCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAAATACCTGGGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGTTTCAGGGGCTGGGAATATAACACTTCATAGTACACCATTTTCAATGAACATGTCAGCATACAACACCCCTTCTCCAGTTCCCTCACAAGTCGCTACAGCAG
CTCCACCACCATTGAACAGAAATGTACAAGGTCAGCAAAATCCTACTGTGATGGCTGGAGAGGTTTCACCAAGGTCAAATGTCAATGCTCCGGGTCAAGCACCAAGGAGGAAGTTTATGGATGAAGGAAAATTAAGAAAGAGCATCCGATCATCTTCCACACGTGCTGCATACTCTCAGGTTTCAGGAAGGTTATTTTCT
GAAACCGGACCACGCAGAAGTACAAGGCTTTCAGGAGATGCAACAATACCAGTTAGCTCATCTGTGTTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTTCCTGGAGGTCTGTCTTCAACAACCAAAATGAATGCATCGAGCTCTCTTCGCTCAGGCACTGTTCGTAAAGGGCATTCATTGGCTTTAGA
CAGTAGTTACGAAGATGGTAAAAAATATGAAGCTTTGGAAGACTCTGGGCCAGAAGATGTAGCATTTAATTCTTCTCGGCGTGCTGGATCAGTTGTAATGGATGACGAGCCTCGTATGCGTAACAGATCAAGTGGTTTAATAGGTCGTAGTTCAAGGGTTGCAGAGGGTTCTTTGGAGCTTTTAGGACTTTTGCGAGTTC
TTGGAGAAGCATTCAGGCATTGTTGCATGCATCGATGCAAGGAGGCTCTGGAAGTCTTTTGTAAACTTCCACATCATCAGTATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAACGTGCCTTTATTTGGGCTCGTCGTGTCTCTCCTTACTATCTAGAAGGA
ATGGATATCTACTCCACAGTTCTTTATCACATGAAGGAGGAGATGAAGCTGAGTTACTTAGCTCAGGAATTGAATGCAATTGATCGTTTATCTCCTCAAGCTTGGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGAGCCATACAACTTGATTCACGTTTTACATA
TGCTCATACACTTTGTGGTCACGAATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCACTGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCT
CTGTTCTAATGTGTTACCTCGGGATGGCGTTGCATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGT
GAAAGTAGTGTCTACTCTCTAATTGGTAAAATTTACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATA
TATTTTAGCGTCAACCCCAACATCTATCAATCTGTTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTgtaagtctttgacatttctaattcctgggaaattaccggtatccagcactaatgatacctgtaccacttctcactgtctcagACGACCGAAGTGTACCAT
GTGAAGAATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTG
GCCATGTATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACT
ATTAATCTGGTAAAATCAGGAGGTGGGAGGTTGACTTACCTGGGCTTTTAGTTGGGCAGCTATAAATATTGAATTACACACATTTCTCTACTAACACAAACCCATAAGTACAATGAAC
Intron 5 GTTGAAGTTA ... CATCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.5 | 28 | 0 | 4 |
| A2 | 20 | 20 | 0 | 5 |
| A3 | 10.71 | 25 | 0 | 3 |
| A4 | 32.35 | 23 | 0 | 11 |
| A5 | 37.5 | 5 | 0 | 3 |
| A6 | 15.38 | 44 | 0 | 8 |
| A7 | 20.93 | 68 | 0 | 18 |
| A8 | 26.32 | 70 | 0 | 25 |
| A9 | 23.86 | 67 | 0 | 21 |
| A10 | 20 | 32 | 0 | 8 |
>TRINITY_DN42301_c0_g1_i4 from sample A8 / Example spliced isoformTTCCGGAAAAGAGGGTTCGATTTCAAGTAAAGAGGACCAGAGGTTTCTGCCAAAGGCTCATGGTCGCAGCAGCCTTGATCTCACTTGGATCTCCATAACAGCAAGGAAAAGTCATAGCATTTGTATATCTTCAGAGATCTTGGTGGCTGTAGTTTCTGGGTGTTCTTGCTGGTTTCCTGCGATTCAAATAGGCGACATAC
GCATACTTTGGTAGTTATTGGCCGTTTTTACTAATGAATCATGGAGTCCCGAATGGTGGAATGCGTGAACTATAGCCTTCGCCAATACATGTACAGCAATGCTATTTTTATTGGCGAACGACTCTGTGCCGAATACCCTTCCGAGAAGAACTCTCAATTATTGGCAAGCTGTTACTTACGTAACAATCAAGCTTATCGTG
CATACAACATCTTAAAAGGGACTCAATCTGCACAATCCCGTTATTTATTTGCACTAGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCGTTATGTCCTCTCAATGAACCTAGCACAGAGGTTCCAAATGGTGCAGCTGGTCATTATCTGCTTGGAAAAATATACAGGTATACTGATAGAAGAAAAATTGCG
ATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCTCTTCTTTGGGCTGCATATGAAGAGTTGTGCATCTTAGGTGCTGAAGAAGAAGCAGCTGAACTTTATGGTGATTCAGCTGTTTTTCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCCCAATATTTGCCATCAGCTGCTGATGACCGTAATATGCCATCTAG
CCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAAATACCTGGGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGTTTCAGGGGCTGGGAATATAACACTTCATAGTACACCATTTTCAATGAACATGTCAGCATACAACACCCCTTCTCCAGTTCCCTCACAAGTCGCTACAGCAGCTCCAC
CACCATTGAACAGAAATGTACAAGGTCAGCAAAATCCTACTGTGATGGCTGGAGAGGTTTCACCAAGGTCAAATGTCAATGCTCCGGGTCAAGCACCAAGGAGGAAGTTTATGGATGAAGGAAAATTAAGAAAGAGCATCCGATCATCTTCCACACGTGCTGCATACTCTCAGGTTTCAGGAAGGTTATTTTCTGAAACC
GGACCACGCAGAAGTACAAGGCTTTCAGGAGATGCAACAATACCAGTTAGCTCATCTGTGTTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTTCCTGGAGGTCTGTCTTCAACAACCAAAATGAATGCATCGAGCTCTCTTCGCTCAGGCACTGTTCGTAAAGGGCATTCATTGGCTTTAGACAGTAG
TTACGAAGATGGTAAAAAATATGAAGCTTTGGAAGACTCTGGGCCAGAAGATGTAGCATTTAATTCTTCTCGGCGTGCTGGATCAGTTGTAATGGATGACGAGCCTCGTATGCGTAACAGATCAAGTGGTTTAATAGGTCGTAGTTCAAGGGTTGCAGAGGGTTCTTTGGAGCTTTTAGGACTTTTGCGAGTTCTTGGAG
AAGCATTCAGGCATTGTTGCATGCATCGATGCAAGGAGGCTCTGGAAGTCTTTTGTAAACTTCCACATCATCAGTATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAACGTGCCTTTATTTGGGCTCGTCGTGTCTCTCCTTACTATCTAGAAGGAATGGAT
ATCTACTCCACAGTTCTTTATCACATGAAGGAGGAGATGAAGCTGAGTTACTTAGCTCAGGAATTGAATGCAATTGATCGTTTATCTCCTCAAGCTTGGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGAGCCATACAACTTGATTCACGTTTTACATATGCTCA
TACACTTTGTGGTCACGAATATGTTGCAATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCACTGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTC
TAATGTGTTACCTCGGGATGGCGTTGCATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGT
AGTGTCTACTCTCTAATTGGTAAAATTTACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTT
AGCGTCAACCCCAACATCTATCAATCTGTTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTTCTGGGAAATTACCGGTATCCAGCACTAATGATACCTGTACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAG
AATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATG
TATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAAT
CTGGTAAAATCAGGAGGTGGGAGGTTGACTTACCTGGGCTTTTAGTTGGGCAGCTATAAATATTGAATTACATACATTTCTCTACTAACACAAACCCATAAGTACAATGAACG
>TRINITY_DN42301_c0_g1_i1 from sample A8 / Example unspliced isoform:GGATGGCGTTGCATGCTCTAAAGgttgaagttaatagtgtctattttctaacttgttctggtttgcttgtcgttagggttcacactgtttaggattgataatctggggaggttgagccaaataggattgtacattgtgaattatttctgtagaaaacccacacatgtatctgcttctgtgattttttttttctatatttg
tgttattaactttcatcagcatggaaaatttgggattatccttttgagtgttgcatttgatatatgcatttttcatcctttggcctcagttcgctaaagcaagtgggaaaatgtgatatcctaccattttggaattggatatttggttctgatcagttttactgttgggttttcaattgctacttgcttcagttagcatg
ctgctcattatagacttcaaaagggcttctgtgtttacagtatttgttcaaaaacatttgccattgtagtaagctcattttacattcactgtggtggtaatgtctttcttctgacattgaattaaccaagagtttcaatgttatttatctttgcaattgaagacccttatttctatctttgcatcttgcagAGAAATGAA
GAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTAATTGGTAAAATTTACAAGCGCTTAAATATGCC
AGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTTAGCGTCAACCCCAACATCTATCAATCTGTTACTTCTGTATGAAACTC
CAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTTCTGGGAAATTACCGGTATCCAGCACTAATGATACCTGTACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAGAATGAAGGCCACATTGGCTTTTGTTGTTAACCAATATTATCCTGCTA
AGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATGTATGCAACTGCAGTGTAACTAATTTGGTTGTCTTAATTTATTATGAT
TGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAATCTGGTAAAATCAGGAGGTGGGAGGTTGACTTACCTGGGCTTTTAGTT
GGGCAGCTATAAATATTGAATTACATACATTTCTCTACTAACACAAACCCATAAGTACAATGAACG
Intron 6 GTATTTGGTA ... AGTGAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.75 | 66 | 1 | 0 |
| A2 | 7.69 | 36 | 3 | 3 |
| A3 | 4.95 | 48 | 1 | 4 |
| A4 | 0.9 | 55 | 1 | 0 |
| A5 | 0 | 17 | 0 | 0 |
| A6 | 0 | 69 | 0 | 0 |
| A7 | 0 | 99 | 0 | 0 |
| A8 | 0 | 45 | 0 | 0 |
| A9 | 0 | 77 | 0 | 0 |
| A10 | 0 | 63 | 0 | 0 |
>TRINITY_DN112306_c10_g1_i8 from sample A3 / Example spliced isoformCCGGGATCAGTGACGTAGTATTCCGGAAAAGAGGGTTCGATTTCAAGTAAAGAGGACCAGAGGTTTCTGCCAAAGGCTCATGGTCGCAGCAGCCTTGATCTCACTTGGATCTCCATAACAGCAAGGAAAAGTCATAGCATTTGTATATCTTCAGAGATCTTGGTGGCTGTAGTTTCTGGGTGTTCTTGCTGGTTTCCTGC
GATTCAAATAGGCGACATACGCATACTTTGGTAGTTATTGGCCGTTTTTACTAATGAATCATGGAGTCCCGAATGGTGGAATGCGTGAACTATAGCCTTCGCCAATACATGTACAGCAATGCTATTTTTATTGGCGAACGACTCTGTGCCGAATACCCTTCCGAGAAGAACTCTCAATTATTGGCAAGCTGTTACTTGCG
TAACAATCAAGCTTATCGTGCATACAACATCTTAAAAGGGACTCAATCTGCACAATCCCGTTATTTATTTGCACTAGTATGCTTTGACATGGGCCTTCTTCGTGAAGCAGAAGCAGCGTTATGTCCTCTCAATGAACCTAGCACAGAGGTTCCAAATGGTGCAGCTGGTCATTATCTGCTTGGAAAAATATACAGGTATA
CTGATAGAAGAAAAATTGCGATTGAGCATTTTGTGCAAGCTGTGTCACTGGACCCTCTTCTTTGGGCTGCATATGAAGAGTTGTGCATCTTAGGTGCTGAAGAAGAAGCAGCTGAACTTTATGGTGATTCAGCTGTTTTTCGCCTTCAACAACAACACCAGTTAGAATTAAGTTCCCAATATTTGCCATCAGCTGCTGAT
GACCGTAATATGCCATCTAGCCGGTCTTCCTACTCTAATGATGCAAGTCCAAGACAAGCAAGACAAATACCTGGGAGCAGTGGTGGAGAATTGCCTGCAGGTCATGCTTCTGTTTCAGGGGCTGGGAATATAACACTTCATAGTACACCATTTTCAATGAACATGTCAGCATACAACACCCCTTCTCCAGTTCCCTCACA
AGTCGCTACAGCAGCTCCACCACCATTGAACAGAAATGTACAAGGTCAGCAAAATCCTACTGTGATGGCTGGAGAGGTTTCACCAAGGTCAAATGTCAATGCTCCGGGTCAAGCACCAAGGAGGAAGTTTATGGATGAAGGAAAATTAAGAAAGGTTTCAGGAAGGTTATTTTCTGAAACCGGACCACGCAGAAGTACAA
GGCTTTCAGGAGATGCAACAATACCAGTTAGCTCATCTGTGTTGCCAGTAGGTGGAAATGGGTCTGGTAATTCCTCTGCTAAACTTCCTGGAGGTCTGTCTTCAACAACCAAAATGAATGCATCGAGCTCTCTTCGCTCAGGCACTGTTCGTAAAGGGCATTCATTGGCTTTAGACAGTAGTTACGAAGATGGTAAAAAA
TATGAAGCTTTGGAAGACTCTGGGCCAGAAGATGTAGCATTTAATTCTTCTCGGCGTGCTGGATCAGTTGTAATGGATGACGAGCCTCGTATGCGTAACAGATCAAGTGGTTTAATAGGTCGTAGTTCAAGGGTTGCAGAGGGTTCTTTGGAGCTTTTAGGACTTTTGCGAGTTCTTGGAGAAGCATTCAGGCATTGTTG
CATGCATCGATGCAAGGAGGCTCTGGAAGTCTTTTGTAAACTTCCACATCATCAGTATGCTACAGGATGGGTACTATGTCAGGTTGGGAAGACACATTTTGAAATGGTGGACTATTATGAGGCAGAACGTGCCTTTATTTGGGCTCGTCGTGTCTCTCCTTACTATCTAGAAGGAATGGATATCTACTCCACAGTTCTTT
ATCACATGAAGGAGGAGATGAAGCTGAGTTACTTAGCTCAGGAATTGAATGCAATTGATCGTTTATCTCCTCAAGCTTGGTGTGCTTTGGGTAATTGTTATAGTTTACAGAAGGATCATGAGACTGCCCTGAAAACTTTTCAACGAGCCATACAACTTGATTCACGTTTTACATATGCTCATACACTTTGTGGTCACGAA
TATGTTGCAATGGAGGAGTTTGAGAATGGCATTACTTGTTATCGAAGTGCACTGCGAATTGATCCTCGCCATTACAATGCCTGGTATGGCTTAGGAATGATATATCTCCGGCAGGAAAAGTATGATTTTGCGGAGCATCATTTTCGAACGGCTTTTCTAATCAATCCTCGATCCTCTGTTCTAATGTGTTACCTCGGGAT
GGCGTTGCATGCTCTAAAGAGAAATGAAGAAGCCCTTGAAATGCTGGATCAAGCAATCTTAGCTGATACAAAGAATCCATTACCTATTTATCAGAAGGCAAACGTGTTAGTGAGCAATGAAAAATACAATGATGCTTTAGAGGAGCTAGAGTTGCTAAAAGAGGTTGCACCCCGTGAAAGTAGTGTCTACTCTCTAATTG
GTAAAATTTACAAGCGCTTAAATATGCCAGAACGCGCAATGTATCATTTTGGTCTTGCTTTGGATTTGAAGCCATCAACTGCAGATGTTGCCATAATCAAGTCTGCTATTGAGAAGTTGCATGTACCAGATGATATCGAGGATCATCTGTAGAAATCCTGTGATGCTGCAATATATATTTTAGCGTCAACCCCAACATCT
ATCAATCTGTTACTTCTGTATGAAACTCCAGACTGTATTTGTAGGTCTCTCTCTATCAGTCCAATCCATACAGCTGTAAGTCTTTGACATTTCTAATTTCTGGGAAATTACCGGTATCCAGCACTAATGATACCTGTACCACTTCTCACTGTCTCAGACGACCGAAGTGTACCATGTGAAGAATGAAGGCCACATTGGCT
TTTGTTGTTAACCAATATTATCCTGCTAAGAAAATTAGGGAACTCATGCTCTTTAGGTCAGATGCGGGCTGTACAATACATGAATGTAGAGGATTAACATGCTAAAATGCAAACTCCATGATTGTATTCCAAATGGCCAGTGTCAGAGGAATCTCTTATGGCGGTTTTTTTGTTGGCCATGTATGCAACTGCAGTGTAAC
TAATTTGGTTGTCTTAATTTATTATGATTGAGATTCCTTCATTTAGCAAACTCAAACCTAAGGTAGGTCACACTTGGGTACAAGAGTCCATAATTTTCTTCCTATCATTTAGAATAGATGAATTAACAACTATGCTATCAACTGAAGTGGATGAATGATCTCCATGTTTTTGACTATTAATCTGGTAAAATCAGGAGGTG
GGAGGTTGACT
>TRINITY_DN112306_c10_g1_i2 from sample A3 / Example unspliced isoform:TTGTTGCATGCATCGATGCAAGgtatttggtatataagctaggtatcttttattggttaattttacatgtctcaaattgaaatcatcatggtgagttttgtaattcatagagaagatttactgaatgtttcatatctgtgagtgaaacagGAGGCTCTGGAAGTCTTTTGTAAACTTCCACATCATCAGTATGCTACAGG
ATGGGTACTATGTCAGGTCAACTCACTTTCTGCTTTTCTGCTAGTGTGGTTTTGAACTTTTATGCACTATTTTGTTACAGAATTCTTTACTTCTGGACCATACAAGCCCTGTTAAAAGTACAAAGAAAATGATTTTAAAGCTGTTCATTGGGACGTTTTTTAACTAATCTAGGAAGAGGTTGTTAGAAATATCAG