sp|B8AE37|HDR1_ORYSI ----> Protein HEADING DATE REPRESSOR 1
Intron 1 GTAAGCCCTT ... TGCCAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.02 | 18 | 11 | 10.4 |
| A2 | 35.57 | 11 | 1 | 8.4 |
| A3 | 34.29 | 10 | 3 | 8.6 |
| A4 | 46.9 | 11 | 2 | 12 |
| A5 | 21.43 | 5 | 2 | 1.7 |
| A6 | 31.74 | 109 | 3 | 74.6 |
| A7 | 31.3 | 131 | 9 | 89 |
| A8 | 33 | 135 | 16 | 95.1 |
| A9 | 33.6 | 66 | 4 | 51.9 |
| A10 | 33.35 | 97 | 3 | 77.7 |
>TRINITY_DN125777_c2_g1_i3 from sample A1 / Example spliced isoformGGATTTTTCAAAGCTTCCCAAACTTCCATTTCCAAGACCCCGAGTTCTTCCATTTCCGAAACCGCGAACTCTGGACACCAAACCTAAAATATAAATCATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGGTATGCCTCGGATTACACTCTAAGTGTCTCTGTTGGATTTGCTGATTGTCTCCAGTTTTGTCCTGTAG
GAGCTGTTGCCTGCAATATAGGTCTTGTATAGAGTTTCTAGACTTCAGAATATTGTCACCATGAAGCTCTTCTCCGAATCGAAAAAACGAATTGATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCCCAACGAAACCAAGAAGGCGGTGGTCTTC
TCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAGGAAAAGAGCAATGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCTGCCACCTATCCGAGTGGATGGGTTGTGG
GCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGAAGTTTATTAAAGAGTGGTATAGGTTCTTATCCAGTCCTTAGCTTATGCTTGGATGCCTTGTCAGAGTCAAACCTGAGGATGCCTTTCTGCTGGGGAGACCATTCGTCCTGAAGCTTCTTAAA
AGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAAACTTTGATCAATTGTTTTCTGTCTTCTACACTCTCCACCATTCGTTCTGAAGCTTCTTAAAAGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAAACTTTGATCAATTGTTTTCTGTCTTCTAAATTCTCCATATTTCTTTTGACTTCTCTTGAGATG
ACTGTCTCCTGTATCACCATCACTATTCATAGTTGAAGTTGACTTGTCATACTGGATTCATTTCTAGCCATTTTCCTGGCATCTAAAAGCTGGGTCAATCTTCCATACGATCCCAAGGATATTCGACTTGAGAGAGGCTATGGGCCAACTCACTGATCAACTAATCTGCTTTGGCTGGCTATCTTTTTTCTTCCCTTCTT
GGTGACAATGGATCGATGTCTTCGATTAAGAAACCTTGATATCAAGATCAGGAAATAGATGGTTTGAATGAGCAGCTTGAAGTGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAGCTTCAGCAAGAACGAAGCAAACGGATGGAGTTAGAGAGGGAGAATACTGTATTACAAGATCGGATGGCGATGCTGACTGAAAT
GCTCGAGGAAAATGAGGATGCAGAAACTGTGGATGGTGCAAATTTTTCACCAAGCGATCTGTAACAAACAATTTGTAGTCTTTTCATGTAAAAATAAGAGTAATTCTTATCCATTATTTTTACAAAGCGCCATCCTTGATGAACAACACTACATTCTGGTAGGGTCCTATGGTAGCATGCAAGAGTCTATTGAAGGTGGA
CAAATTTGTTAGTTTCAGTTTGTGGAATTAGGTGGAGGCATTCTGTGATTTATATCGTTGGTGAAGTGAGAATACTAGGTAAGATATTGTTATGCGGGACCTTAAAAGGAGGTATTTGTATAATGTAGGCTTGAACCATCAGAACTCCCAACGCTGTAAAATATGTAGCAATCACGATTGGATTATTCATTGTTCATTCA
TTCTATTCAGTATTATTTGATATTATTTTTGAAGGCATATGCCAAGTGGTATCACAATCAGAGTCGGCTTCTGTTGGCTTCCCTCGTCTTTTGTGAGCAGTGAACTGGATTCAATATATATACATTAAACGGTATGTTAGGTACGAGCTATAGATCTGTCACCACAAGTTTAAGAGGTTTTTACCCTTTTGAAGATTGAT
T
>TRINITY_DN125777_c2_g1_i1 from sample A1 / Example unspliced isoform:GGATTTTTCAAAGCTTCCCAAACTTCCATTTCCAAGACCCCGAGTTCTTCCATTTCCGAAACCGCGAACTCTGGACACCAAACCTAAAATATAAATCATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGGTATGCCTCGGATTACACTCTAAGTGTCTCTGTTGGATTTGCTGATTGTCTCCAGTTTTGTCCTGTAG
GAGCTGTTGCCTGCAATATAGGTCTTGTATAGAGTTTCTAGACTTCAGAATATTGTCACCATGAAGCTCTTCTCCGAATCGAAAAAACGAATTGATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCCCAACGAAACCAAGAAGGCGGTGGTCTTC
TCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAGGAAAAGAGCAATGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCTGCCACCTATCCGAGTGGATGGGTTGTGG
GCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGGTTTGCTCTCCATACCTGTTTTCTGGAATGTTTTGAAATTTAAACATTGCTTAATCCCATGGCTTCTTGATTTTTATTGCAGAAGTATCTTTTAGGCACTTTTCATTGCTAATGTAATGCTTA
AAACTTTTGTTAAAGTGTGTGGAGCACACATTGAGGAGGTCTCAATGCATTTTTTACCTTGTCATTTGGTATTGTGCTGGATCCCCATGGAGTCATTCCTTGTGCAAACACTACTGGCCTTAGTTTATACGTTTACAGAACTGAGGCTTCAATCACCAACTGAACTCTTGTGTCTGACATACAATCGCAGTATTGGCCAA
TTTGCCCACTCCTTGTGCAAACACTACTGGCCTTAGTTTATACGTTTACAGAACTGAGGCTTCAATCACCAACTGAACTCTTGTGTCTGACATACAATCGCAGTATTGGCCAATTTGCCCACTAGTAGGAAAATTTTGAGTCCTCAATCATCAAGGGAGGTTGGTGTAATATGGTTCCCTCTTTCTCAATTTCATTTCTG
ACAATTTTTTATGAGGAAAGGGGCATTCTTATAGTTCTGCCAACTCGAAATTGCAACGTGCCCTTCCTAGTTGTCTTTATTTTCAGTGATTGTTTAAACCATTTTACAACCTTAAGAGCATTTCTGCCTTCAGAGTGTATTTCTGGTTGCTTACTGAAAATTACATTTCTATAGCCAATGTTGAATAAATAAATTCATAT
TATATTTTATAACTCGATATTGAATAGATTGCAAGACCGATCCCCATGTGTTGGCCAAAAATAGTATTTTACAAAACAAAAAATAAAGTAATATAATAATAATGCTGGAATTTCATATATACTTTTGTTGTTGTTTGTAACTCTGGGCCATTGCATATAGAATAAGTAGATGTAGTCATTGCATGGACAGTGATTAGATG
CATCTAGAATCATGTGTCTTACATGTAACATTATTAAATTAAATAGAAAAAAAAGTGACCTCCGAAAATGAGAAACAATAAATTTTTTAAAAGGCATTGTGATAATAAAATAAACCAGCATAGATCCATTTTAACTCCAGATCTACTAAGGACCGAACTTTTTCTGAAATTTTACACTTTAAAAAGATTTGCACCTCAAA
AGATTTGATCCCTTTTGGTGTTAGGCAGATCCGAAATTAAAATAGATTTATACTAGTTTATAATTTTCTATTTTCCAAATCTCATGAATCTAGAATCTACATGGTGTCTTTTTTCGCCTATATAAGCATGAATTCCATTGCATATATAAGCATGAATTCCATTGCATATGGTGCTTGCTGTGTTGTTCTATTATTTTAAT
TGTTAAAAGGATCTTGTATTAATGGGCCTTTGCTTAAAATTTTAAAAGCATTACATCATTTCTTGCTTTAGCTTTGATCTTCATTTCTTACTCTGACTAAACCTTCGGCTTGCAGAAGTTTATTAAAGAGTGGTATAGGTTCTTATCCAGTCCTTAGCTTATGCTTGGATGCCTTGTCAGAGTCAAACCTGAGGATGCCT
TTCTGCTGGGGAGACCATTCGTCCTGAAGCTTCTTAAAAGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAAACTTTGATCAATTGTTTTCTGTCTTCTACACTCTCCACCATTCGTTCTGAAGCTTCTTAAAAGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAAACTTTGATCAATTGTTTTCTGTCTT
CTAAATTCTCCATATTTCTTTTGACTTCTCTTGAGATGACTGTCTCCTGTATCACCATCACTATTCATAGTTGAAGTTGACTTGTCATACTGGATTCATTTCTAGCCATTTTCCTGGCATCTAAAAGCTGGGTCAATCTTCCATACGATCCCAAGGATATTCGACTTGAGAGAGGCTATGGGCCAACTCACTGATCAACT
AATCTGCTTTGGCTGGCTATCTTTTTTCTTCCCTTCTTGGTGACAATGGATCGATGTCTTCGATTAAGAAACCTTGATATCAAgtaagcccttgtaagcagtttttccatcaggcctatcttgcatgtctgctttcatgcaccattttagtctaattcatgattcatgattcatgattcatctcattttcatctttcaat
ttctattagaacttcacatttggtgatctgccaaacagGATCAGGAAATAGATGGTTTGAATGAGCAGCTTGAAGTGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAGCTTCAGCAAGAACGAAGCAAACGGATGGAGTTAGAGAGGGAGAATACTGTATTACAAGATCGGATGGCGATGCTGACTGAAATGCTCGAG
GAAAATGAGGATGCAGAAACTGTGGATGGTGCAAATTTTTCACCAAGCGATCTGTAACAAACAATTTGTAGTCTTTTCATGTAAAAATAAGAGTAATTCTTATCCATTATTTTTACAAAGCGCCATCCTTGATGAACAACACTACATTCTGGTAGGGTCCTATGGTAGCATGCAAGAGTCTATTGAAGGTGGACAAATTT
GTTAGTTTCAGTTTGTGGAATTAGGTGGAGGCATTCTGTGATTTATATCGTTGGTGAAGTGAGAATACTAGGTAAGATATTGTTATGCGGGACCTTAAAAGGAGGTATTTGTATAATGTAGGCTTGAACCATCAGAACTCCCAACGCTGTAAAATATGTAGCAATCACGATTGGATTATTCATTGTTCATTCATTCTATT
CAGTATTATTTGATATTATTTTTGAAGGCATATGCCAAGTGGTATCACAATCAGAGTCGGCTTCTGTTGGCTTCCCTCGTCTTTTGTGAGCAGTGAACTGGATTCAATATATATACATTAAACGGTATGTTAGGTACGAGCTATAGATCTGTCACCACAAGTTTAAGAGGTTTTTACCCTTTTGAAGATTGATT
Intron 2 GTAATCGTGG ... TTGTAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.87 | 43 | 14 | 6 |
| A2 | 22.29 | 61 | 19 | 16 |
| A3 | 18.52 | 55 | 21 | 4 |
| A4 | 26.01 | 64 | 26 | 19 |
| A5 | 23.08 | 30 | 15 | 3 |
| A6 | 20.41 | 117 | 42 | 18 |
| A7 | 18.64 | 168 | 58 | 19 |
| A8 | 19.18 | 118 | 26 | 30 |
| A9 | 15.63 | 170 | 42 | 21 |
| A10 | 15.62 | 162 | 37 | 23 |
>TRINITY_DN103551_c0_g1_i1 from sample A3 / Example spliced isoformTTTGATGATAGTAGTGGATTAGGTTGCAGGATTTTTCAAAGCTTCCCAAACTTCCATTTCCAAGACCCCGAGTTCTTCCATTTCCGAAACCGCGAACTCTGGACACCAAACCTAAAATATAAATCATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGGTATGCCTCGGATTACACTCTAAGTGTCTCTGTTGGATTT
GCTGATTGTCTCCAGTTTTGTCCTGTAGGAGCTGTTGCCTGCAATATAGGTCTTGTATAGAGTTTCTAGACTTCAGAATATTGTCACCATGAAGCTCTTCTCCGAATCGAAAAAACGAATTGATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCC
CAACGAAACCAAGAAGGCGGTGGTCTTCTCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAGGAAAAGAGCACTGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCT
GCCACCTATCCGAGTGGATGGGTTGTGGGCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGGTTTGCTCTCCATACCTGTTTTCTGGAATGTTTTGAAATTTAAACATTGCTTAATCCCATGGCTTCTTGATTTTTATTGCAGAAGTATCTTTTAG
GCACTTTTCATTGCTAATGTAATGCTTAAAACTTTTGTTAAAGTGTGTGGAGCACACATTGAGGAGGTCTCAATGCATTTTTTACCTTGTCATTTGGTATTGTGCTGGATCCCCATGGAGTCATTCCTTGTGCAAACACTACTGGCCTTAGTTTATACGTTTACAGAACTGAGGCTTCAATCACCAACTGAACTCTTGTG
TCTGACATACAATCGCAGTATTGGCCAATTTGCCCACTCCTTGTGCAAACACTACTGGCC
>TRINITY_DN103551_c0_g1_i4 from sample A3 / Example unspliced isoform:TTTGATGATAGTAGTGGATTAGGTTGCAGGATTTTTCAAAGCTTCCCAAACTTCCATTTCCAAGACCCCGAGTTCTTCCATTTCCGAAACCGCGAACTCTGGACACCAAACCTAAAATATAAATCATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGGTATGCCTCGGATTACACTCTAAGTGTCTCTGTTGGATTT
GCTGATTGTCTCCAGTTTTGTCCTGTAGGAGCTGTTGCCTGCAATATAGGTCTTGTATAGAGTTTCTAGACTTCAGAATATTGTCACCATGAAGCTCTTCTCCGAATCGAAAAAACGAATTGgtaatcgtggctttctgttttcttttcttgtaaggttgtttcaaggataatgtagctacgtgttttcttcaaacttcc
atatatgaatctacttatataccaagttttttttgccttaatttatccgcttattttctgattagcatatagagaaatgggttgtattacatcttagaattggtgcctgttcaccttagatttttttgcgtgcttttgttgtttctgaaatgcattatttctgtttactagaccactgattgcaaacactttgtttgtaa
ttagATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCCCAACGAAACCAAGAAGGCGGTGGTCTTCTCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAG
GAAAAGAGCACTGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCTGCCACCTATCCGAGTGGATGGGTTGTGGGCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGGATCAGGAAATAG
ATGGTTTGAATGAGCAGCTTGAAGTGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAGCTTCAGCAAGAACGAAGCAAACGGATGGAGTTAGAGAGGGAGAATACTGTATTACAAGATCGGATGGCGATGCTGACTGAAATGCTCGAGGAAAATGAGGATGCAGAAACTGTGGATGGTGCAAATTTTTCACCAAGCGAT
CTGTAACAAACAATTTGTAGTCTTTTCATGTAAAAATAAGAGTAATTCTTATCCATTATTTTTACAAAGCGCCATCCTTGATGAACAACACTACATTCTGGTAGGGTCCTATGGTAGCATGCAAGAGTCTATTGAAGGTGGACAAATTTGTTAGTTTCAGTTTGTGGAATTAGGTGGAGGCATTCTGTGATTTATATCGT
TGGTGAAGTGAGAATACTAGGTAAGATATTGTTATGCGGGACCTTAAAAGGAGGTATTTGTATAATGTAGGCTTGAACCATCAGAACTCCCAACGCTGTAAAATATGTAGCAATCACGATTGGATTATTCATTGTTCATTCATTCTATTCAGTATTATTTGATATTATTTTTGAAGGCATATGCCAAGTGGTATCACAAT
CAGAGTCGGCTTCTGTTGGCTTCCCTCGTCTTTTGTGAGCAGTGAACTGGATTCAATATATATACATTAAACGGTATGTTAGGTACGAGCTATAGATCTGTCACCACG
Intron 3 GTTTGCTCTC ... TGCCAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.14 | 51 | 22 | 16 |
| A2 | 19.83 | 97 | 34 | 14 |
| A3 | 17.2 | 77 | 17 | 15 |
| A4 | 28.97 | 38 | 13 | 18 |
| A5 | 15.56 | 19 | 4 | 3 |
| A6 | 21.06 | 431 | 101 | 129 |
| A7 | 19.02 | 528 | 93 | 155 |
| A8 | 19.35 | 523 | 89 | 162 |
| A9 | 17.74 | 415 | 89 | 90 |
| A10 | 17.58 | 457 | 59 | 136 |
>TRINITY_DN125777_c2_g1_i4 from sample A1 / Example spliced isoformGGATTTTTCAAAGCTTCCCAAACTTCCATTTCCAAGACCCCGAGTTCTTCCATTTCCGAAACCGCGAACTCTGGACACCAAACCTAAAATATAAATCATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGGTATGCCTCGGATTACACTCTAAGTGTCTCTGTTGGATTTGCTGATTGTCTCCAGTTTTGTCCTGTAG
GAGCTGTTGCCTGCAATATAGGTCTTGTATAGAGTTTCTAGACTTCAGAATATTGTCACCATGAAGCTCTTCTCCGAATCGAAAAAACGAATTGATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCCCAACGAAACCAAGAAGGCGGTGGTCTTC
TCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAGGAAAAGAGCAATGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCTGCCACCTATCCGAGTGGATGGGTTGTGG
GCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGGATCAGGAAATAGATGGTTTGAATGAGCAGCTTGAAGTGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAGCTTCAGCAAGAACGAAGCAAACGGATGGAGTTAGAGAGGGAGAATACTGTA
TTACAAGATCGGATGGCGATGCTGACTGAAATGCTCGAGGAAAATGAGGATGCAGAAACTGTGGATGGTGCAAATTTTTCACCAAGCGATCTGTAACAAACAATTTGTAGTCTTTTCATGTAAAAATAAGAGTAATTCTTATCCATTATTTTTACAAAGCGCCATCCTTGATGAACAACACTACATTCTGGTAGGGTCCT
ATGGTAGCATGCAAGAGTCTATTGAAGGTGGACAAATTTGTTAGTTTCAGTTTGTGGAATTAGGTGGAGGCATTCTGTGATTTATATCGTTGGTGAAGTGAGAATACTAGGTAAGATATTGTTATGCGGGACCTTAAAAGGAGGTATTTGTATAATGTAGGCTTGAACCATCAGAACTCCCAACGCTGTAAAATATGTAG
CAATCACGATTGGATTATTCATTGTTCATTCATTCTATTCAGTATTATTTGATATTATTTTTGAAGGCATATGCCAAGTGGTATCACAATCAGAGTCGGCTTCTGTTGGCTTCCCTCGTCTTTTGTGAGCAGTGAACTGGATTCAATATATATACATTAAACGGTATGTTAGGTACGAGCTATAGATCTGTCACCACAAG
TTTAAGAGGTTTTTACCCTTTTGAAGATTGATT
>TRINITY_DN125777_c2_g1_i1 from sample A1 / Example unspliced isoform:GGATTTTTCAAAGCTTCCCAAACTTCCATTTCCAAGACCCCGAGTTCTTCCATTTCCGAAACCGCGAACTCTGGACACCAAACCTAAAATATAAATCATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGGTATGCCTCGGATTACACTCTAAGTGTCTCTGTTGGATTTGCTGATTGTCTCCAGTTTTGTCCTGTAG
GAGCTGTTGCCTGCAATATAGGTCTTGTATAGAGTTTCTAGACTTCAGAATATTGTCACCATGAAGCTCTTCTCCGAATCGAAAAAACGAATTGATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCCCAACGAAACCAAGAAGGCGGTGGTCTTC
TCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAGGAAAAGAGCAATGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCTGCCACCTATCCGAGTGGATGGGTTGTGG
GCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGgtttgctctccatacctgttttctggaatgttttgaaatttaaacattgcttaatcccatggcttcttgatttttattgcagaagtatcttttaggcacttttcattgctaatgtaatgctta
aaacttttgttaaagtgtgtggagcacacattgaggaggtctcaatgcattttttaccttgtcatttggtattgtgctggatccccatggagtcattccttgtgcaaacactactggccttagtttatacgtttacagaactgaggcttcaatcaccaactgaactcttgtgtctgacatacaatcgcagtattggccaa
tttgcccactccttgtgcaaacactactggccttagtttatacgtttacagaactgaggcttcaatcaccaactgaactcttgtgtctgacatacaatcgcagtattggccaatttgcccactagtaggaaaattttgagtcctcaatcatcaagggaggttggtgtaatatggttccctctttctcaatttcatttctg
acaattttttatgaggaaaggggcattcttatagttctgccaactcgaaattgcaacgtgcccttcctagttgtctttattttcagtgattgtttaaaccattttacaaccttaagagcatttctgccttcagagtgtatttctggttgcttactgaaaattacatttctatagccaatgttgaataaataaattcatat
tatattttataactcgatattgaatagattgcaagaccgatccccatgtgttggccaaaaatagtattttacaaaacaaaaaataaagtaatataataataatgctggaatttcatatatacttttgttgttgtttgtaactctgggccattgcatatagaataagtagatgtagtcattgcatggacagtgattagatg
catctagaatcatgtgtcttacatgtaacattattaaattaaatagaaaaaaaagtgacctccgaaaatgagaaacaataaattttttaaaaggcattgtgataataaaataaaccagcatagatccattttaactccagatctactaaggaccgaactttttctgaaattttacactttaaaaagatttgcacctcaaa
agatttgatcccttttggtgttaggcagatccgaaattaaaatagatttatactagtttataattttctattttccaaatctcatgaatctagaatctacatggtgtcttttttcgcctatataagcatgaattccattgcatatataagcatgaattccattgcatatggtgcttgctgtgttgttctattattttaat
tgttaaaaggatcttgtattaatgggcctttgcttaaaattttaaaagcattacatcatttcttgctttagctttgatcttcatttcttactctgactaaaccttcggcttgcagaagtttattaaagagtggtataggttcttatccagtccttagcttatgcttggatgccttgtcagagtcaaacctgaggatgcct
ttctgctggggagaccattcgtcctgaagcttcttaaaagcctttgtctaagatgttctcttgttagagctgccaaactttgatcaattgttttctgtcttctacactctccaccattcgttctgaagcttcttaaaagcctttgtctaagatgttctcttgttagagctgccaaactttgatcaattgttttctgtctt
ctaaattctccatatttcttttgacttctcttgagatgactgtctcctgtatcaccatcactattcatagttgaagttgacttgtcatactggattcatttctagccattttcctggcatctaaaagctgggtcaatcttccatacgatcccaaggatattcgacttgagagaggctatgggccaactcactgatcaact
aatctgctttggctggctatcttttttcttcccttcttggtgacaatggatcgatgtcttcgattaagaaaccttgatatcaagtaagcccttgtaagcagtttttccatcaggcctatcttgcatgtctgctttcatgcaccattttagtctaattcatgattcatgattcatgattcatctcattttcatctttcaat
ttctattagaacttcacatttggtgatctgccaaacagGATCAGGAAATAGATGGTTTGAATGAGCAGCTTGAAGTGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAGCTTCAGCAAGAACGAAGCAAACGGATGGAGTTAGAGAGGGAGAATACTGTATTACAAGATCGGATGGCGATGCTGACTGAAATGCTCGAG
GAAAATGAGGATGCAGAAACTGTGGATGGTGCAAATTTTTCACCAAGCGATCTGTAACAAACAATTTGTAGTCTTTTCATGTAAAAATAAGAGTAATTCTTATCCATTATTTTTACAAAGCGCCATCCTTGATGAACAACACTACATTCTGGTAGGGTCCTATGGTAGCATGCAAGAGTCTATTGAAGGTGGACAAATTT
GTTAGTTTCAGTTTGTGGAATTAGGTGGAGGCATTCTGTGATTTATATCGTTGGTGAAGTGAGAATACTAGGTAAGATATTGTTATGCGGGACCTTAAAAGGAGGTATTTGTATAATGTAGGCTTGAACCATCAGAACTCCCAACGCTGTAAAATATGTAGCAATCACGATTGGATTATTCATTGTTCATTCATTCTATT
CAGTATTATTTGATATTATTTTTGAAGGCATATGCCAAGTGGTATCACAATCAGAGTCGGCTTCTGTTGGCTTCCCTCGTCTTTTGTGAGCAGTGAACTGGATTCAATATATATACATTAAACGGTATGTTAGGTACGAGCTATAGATCTGTCACCACAAGTTTAAGAGGTTTTTACCCTTTTGAAGATTGATT
Intron 4 GTTTGCTCTC ... CGGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.66 | 19 | 22 | 9 |
| A2 | 69.39 | 15 | 34 | 0 |
| A3 | 60.71 | 11 | 17 | 1 |
| A4 | 61.9 | 8 | 13 | 6 |
| A5 | 57.14 | 3 | 4 | 0 |
| A6 | 59.76 | 68 | 101 | 6 |
| A7 | 56.36 | 72 | 93 | 11 |
| A8 | 60.96 | 57 | 89 | 5 |
| A9 | 59.33 | 61 | 89 | 5 |
| A10 | 52.21 | 54 | 59 | 4 |
>TRINITY_DN125777_c2_g1_i3 from sample A1 / Example spliced isoformGGATTTTTCAAAGCTTCCCAAACTTCCATTTCCAAGACCCCGAGTTCTTCCATTTCCGAAACCGCGAACTCTGGACACCAAACCTAAAATATAAATCATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGGTATGCCTCGGATTACACTCTAAGTGTCTCTGTTGGATTTGCTGATTGTCTCCAGTTTTGTCCTGTAG
GAGCTGTTGCCTGCAATATAGGTCTTGTATAGAGTTTCTAGACTTCAGAATATTGTCACCATGAAGCTCTTCTCCGAATCGAAAAAACGAATTGATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCCCAACGAAACCAAGAAGGCGGTGGTCTTC
TCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAGGAAAAGAGCAATGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCTGCCACCTATCCGAGTGGATGGGTTGTGG
GCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGAAGTTTATTAAAGAGTGGTATAGGTTCTTATCCAGTCCTTAGCTTATGCTTGGATGCCTTGTCAGAGTCAAACCTGAGGATGCCTTTCTGCTGGGGAGACCATTCGTCCTGAAGCTTCTTAAA
AGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAAACTTTGATCAATTGTTTTCTGTCTTCTACACTCTCCACCATTCGTTCTGAAGCTTCTTAAAAGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAAACTTTGATCAATTGTTTTCTGTCTTCTAAATTCTCCATATTTCTTTTGACTTCTCTTGAGATG
ACTGTCTCCTGTATCACCATCACTATTCATAGTTGAAGTTGACTTGTCATACTGGATTCATTTCTAGCCATTTTCCTGGCATCTAAAAGCTGGGTCAATCTTCCATACGATCCCAAGGATATTCGACTTGAGAGAGGCTATGGGCCAACTCACTGATCAACTAATCTGCTTTGGCTGGCTATCTTTTTTCTTCCCTTCTT
GGTGACAATGGATCGATGTCTTCGATTAAGAAACCTTGATATCAAGATCAGGAAATAGATGGTTTGAATGAGCAGCTTGAAGTGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAGCTTCAGCAAGAACGAAGCAAACGGATGGAGTTAGAGAGGGAGAATACTGTATTACAAGATCGGATGGCGATGCTGACTGAAAT
GCTCGAGGAAAATGAGGATGCAGAAACTGTGGATGGTGCAAATTTTTCACCAAGCGATCTGTAACAAACAATTTGTAGTCTTTTCATGTAAAAATAAGAGTAATTCTTATCCATTATTTTTACAAAGCGCCATCCTTGATGAACAACACTACATTCTGGTAGGGTCCTATGGTAGCATGCAAGAGTCTATTGAAGGTGGA
CAAATTTGTTAGTTTCAGTTTGTGGAATTAGGTGGAGGCATTCTGTGATTTATATCGTTGGTGAAGTGAGAATACTAGGTAAGATATTGTTATGCGGGACCTTAAAAGGAGGTATTTGTATAATGTAGGCTTGAACCATCAGAACTCCCAACGCTGTAAAATATGTAGCAATCACGATTGGATTATTCATTGTTCATTCA
TTCTATTCAGTATTATTTGATATTATTTTTGAAGGCATATGCCAAGTGGTATCACAATCAGAGTCGGCTTCTGTTGGCTTCCCTCGTCTTTTGTGAGCAGTGAACTGGATTCAATATATATACATTAAACGGTATGTTAGGTACGAGCTATAGATCTGTCACCACAAGTTTAAGAGGTTTTTACCCTTTTGAAGATTGAT
T
>TRINITY_DN125777_c2_g1_i2 from sample A1 / Example unspliced isoform:ATTACATCTTAGAATTGGTGCCTGTTCACCTTAGATTTTTTTGCGTGCTTTTGTTGTTTCTGAAATGCATTATTTCTGTTTACTAGACCACTGATTGCAAACACTTTGTTTGTAATTAGATGGTGTAGCTGATGGACAAACTTTTGAGAGAATGAAAGAAACAATCATTCGGAGCAATCCTCTGCCACCAAGCACCCCAA
CGAAACCAAGAAGGCGGTGGTCTTCTCCTGTTCATGAAGAGGGAAGAGAAGCGCCTTCTCCTGTTAATGAAGAGGGAAGAGAAGAGGGAAGGGAAGAGTTTCCATTGACTGAGAGGAAAAGAGCAATGTTTGAACCTCTGGATCCAATAAGACGCACTGATAATAATAACCTACTTCCTCCACCTGACTTTGACTCTGCC
ACCTATCCGAGTGGATGGGTTGTGGGCAAGAAGAGAAAGCTTGTTAATGTGGATGTGGTAGAGAGCATGCGCCGAATTGCTGTCCATGAGATGAACAGGAAGgtttgctctccatacctgttttctggaatgttttgaaatttaaacattgcttaatcccatggcttcttgatttttattgcagaagtatcttttaggca
cttttcattgctaatgtaatgcttaaaacttttgttaaagtgtgtggagcacacattgaggaggtctcaatgcattttttaccttgtcatttggtattgtgctggatccccatggagtcattccttgtgcaaacactactggccttagtttatacgtttacagaactgaggcttcaatcaccaactgaactcttgtgtct
gacatacaatcgcagtattggccaatttgcccactccttgtgcaaacactactggccttagtttatacgtttacagaactgaggcttcaatcaccaactgaactcttgtgtctgacatacaatcgcagtattggccaatttgcccactagtaggaaaattttgagtcctcaatcatcaagggaggttggtgtaatatggt
tccctctttctcaatttcatttctgacaattttttatgaggaaaggggcattcttatagttctgccaactcgaaattgcaacgtgcccttcctagttgtctttattttcagtgattgtttaaaccattttacaaccttaagagcatttctgccttcagagtgtatttctggttgcttactgaaaattacatttctatagc
caatgttgaataaataaattcatattatattttataactcgatattgaatagattgcaagaccgatccccatgtgttggccaaaaatagtattttacaaaacaaaaaataaagtaatataataataatgctggaatttcatatatacttttgttgttgtttgtaactctgggccattgcatatagaataagtagatgtag
tcattgcatggacagtgattagatgcatctagaatcatgtgtcttacatgtaacattattaaattaaatagaaaaaaaagtgacctccgaaaatgagaaacaataaattttttaaaaggcattgtgataataaaataaaccagcatagatccattttaactccagatctactaaggaccgaactttttctgaaattttac
actttaaaaagatttgcacctcaaaagatttgatcccttttggtgttaggcagatccgaaattaaaatagatttatactagtttataattttctattttccaaatctcatgaatctagaatctacatggtgtcttttttcgcctatataagcatgaattccattgcatatataagcatgaattccattgcatatggtgct
tgctgtgttgttctattattttaattgttaaaaggatcttgtattaatgggcctttgcttaaaattttaaaagcattacatcatttcttgctttagctttgatcttcatttcttactctgactaaaccttcggcttgcagAAGTTTATTAAAGAGTGGTATAGGTTCTTATCCAGTCCTTAGCTTATGCTTGGATGCCTT
GTCAGAGTCAAACCTGAGGATGCCTTTCTGCTGGGGAGACCATTCGTCCTGAAGCTTCTTAAAAGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAAACTTTGATCAATTGTTTTCTGTCTTCTACACTCTCCACCATTCGTTCTGAAGCTTCTTAAAAGCCTTTGTCTAAGATGTTCTCTTGTTAGAGCTGCCAA
ACTTTGATCAATTGTTTTCTGTCTTCTAAATTCTCCATATTTCTTTTGACTTCTCTTGAGATGACTGTCTCCTGTATCACCATCACTATTCATAGTTGAAGTTGACTTGTCATACTGGATTCATTTCTAGCCATTTTCCTGGCATCTAAAAGCTGGGTCAATCTTCCATACGATCCCAAGGATATTCGACTTGAGAGAGG
CTATGGGCCAACTCACTGATCAACTAATCTGCTTTGGCTGGCTATCTTTTTTCTTCCCTTCTTGGTGACAATGGATCGATGTCTTCGATTAAGAAACCTTGATATCAAGTAAGCCCTTGTAAGCAGTTTTTCCATCAGGCCTATCTTGCATGTCTGCTTTCATGCACCATTTTAGTCTAATTCATGATTCATGATTCATG
ATTCATCTCATTTTCATCTTTCAATTTCTATTAGAACTTCACATTTGGTGATCTGCCAAACAGGATCAGGAAATAGATGGTTTGAATGAGCAGCTTGAAGTGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAGCTTCAGCAAGAACGAAGCAAACGGATGGAGTTAGAGAGGGAGAATACTGTATTACAAGATCGGAT
GGCGATGCTGACTGAAATGCTCGAGGAAAATGAGGATGCAGAAACTGTGGATGGTGCAAATTTTTCACCAAGCGATCTGTAACAAACAATTTGTAGTCTTTTCATGTAAAAATAAGAGTAATTCTTATCCATTATTTTTACAAAGCGCCATCCTTGATGAACAACACTACATTCTGGTAGGGTCCTATGGTAGCATGCAA
GAGTCTATTGAAGGTGGACAAATTTGTTAGTTTCAGTTTGTGGAATTAGGTGGAGGCATTCTGTGATTTATATCGTTGGTGAAGTGAGAATACTAGGTAAGATATTGTTATGCGGGACCTTAAAAGGAGGTATTTGTATAATGTAGGCTTGAACCATCAGAACTCCCAACGCTGTAAAATATGTAGCAATCACGATTGGA
TTATTCATTGTTCATTCATTCTATTCAGTATTATTTGATATTATTTTTGAAGGCATATGCCAAGTGGTATCACAATCAGAGTCGGCTTCTGTTGGCTTCCCTCGTCTTTTGTGAGCAGTGAACTGGATTCAATATATATACATTAAACGGTATGTTAGGTACGAGCTATAGATCTGTCACCACAAGTTTAAGAGGTTTTT
ACCCTTTTGAAGATTGATT