sp|Q06801|DPEP_SOLTU ----> 4-alpha-glucanotransferase, chloroplastic/amyloplastic
Intron 1 GTTTGTACCT ... CAAATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.67 | 13 | 17 | 6 |
| A2 | 51.72 | 14 | 15 | 4 |
| A3 | 34.48 | 19 | 10 | 1 |
| A4 | 50 | 14 | 14 | 0 |
| A5 | 50 | 5 | 5 | 4 |
| A6 | 50 | 6 | 6 | 0 |
| A7 | 44.83 | 16 | 13 | 0 |
| A8 | 36.36 | 14 | 8 | 2 |
| A9 | 46.34 | 22 | 19 | 0 |
| A10 | 45 | 22 | 18 | 2 |
>TRINITY_DN115806_c0_g1_i2 from sample A1 / Example spliced isoformGTGTTATGATCTTGAGATTCTTAAGGCAAATTGGCAGATGTTCATGAATGACGAAATAATAAATTTGAAAGGGATAATGACGTGCGATGATCTTGAGATTTATAAGGCAAACTGTTAGATATTCATGAACTCACATATTGTGATCTTGAGCTATTAAGTTCCAGTCCCATCCACTCGATTTCATTTAAGCAATGGCCGTG
GTGAGTTCCAACCGTCTTTCGGCTCTAACAAATTCACTGAGGGATGATAGCATACATTCATTGCCCCCTTGTTTTGGTCATTTTCCAAAGCCTAGCATCTGCCACTTGCGAAACGTTCAGAAAAAGATAAGTCTGAGAACAAAGATGAGCAGCACATTGTCAAAAGATTTTGCCGATTATGAAATAGGAGAAGATCTGCC
TGAAGATTATGCGGATTGGCATCCTCGGAAGGATCCTTCAGATCGCAGAAGGGCAGGGATCTTGCTGCATCCAACTTCATTACCAGGGTCCAACGGCATCGGGGAGCTAGGCCAAGAGGCTTTCTGTTTTCTCGATTGGCTTCAAAGCACTGGCTCTACCGTCTGGCAGGTTCTTCCTCTTGTGCCTCCAGGAAGAAAAT
CAGGTGAAGATGGTTCCCCTTATGCTGGACAGGATGCAAATTGTGGGAATACTCTCTTGATTTCTCTTGAGGAGCTTGTCAAAGATGGTCTTTTATCTAAACAGGAGCTTCCAGAACTGCTGCCTGTGAAGCGCATAGACTTTACCATGGTTGCCCAAGTCAAGGAACCTTTAATCGCAAAGGCTGCAAAGAGGCTCCTA
AATAGCAAGGGAGAACTGAATCAAGAGTTTCAAGTTTTCCAAAGATCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCACTATTTGCGGCCATTGACAATATTGATGATGCTTGCTCTTGGTCAGACTGGCCTCGACCTCTCAGGGATCGGCATCTTGTGGCCCTTGAAGTCATATACCAAAATCAGAAAGAATTTAT
AGACATATTTATAGCCCAACAGTTTTTGTTTCAAAGGCAATGGCAAGCAGTTCACAATTATGCTCAGAAGAAAGGAATTAGGATTATTGGAGATATGCCCATTTATGTTGGTGGTCATAGTGCAGATGTATGGGCCAATAGAAGCCAATTTCAACTGAGATACAAACTTTTCCATCTCCTGATGTTCCCCACAGAATAGA
GCTGGGCGGCCGATTCTTGTCAGTGGTGTTCCTCCTGATGCATTCAGTAATACAGGACAACTATGGGGCAG
>TRINITY_DN115806_c0_g1_i1 from sample A1 / Example unspliced isoform:GTGTTATGATCTTGAGATTCTTAAGGCAAATTGGCAGATGTTCATGAATGACGAAATAATAAATTTGAAAGGGATAATGACGTGCGATGATCTTGAGATTTATAAGGCAAACTGTTAGATATTCATGAACTCACATATTGTGATCTTGAGCTATTAAGTTCCAGTCCCATCCACTCGATTTCATTTAAGCAATGGCCGTG
GTGAGTTCCAACCGTCTTTCGGCTCTAACAAATTCACTGAGGGATGATAGCATACATTCATTGCCCCCTTGTTTTGGTCATTTTCCAAAGCCTAGCATCTGCCACTTGCGAAACGTTCAGAAAAAGATAAGTCTGAGAACAAAGATGAGCAGCACATTGTCAAAAGATTTTGCCGATTATGAAATAGGAGAAGATCTGCC
TGAAGATTATGCGGATTGGCATCCTCGGAAGGATCCTTCAGATCGCAGAAGGGCAGGGATCTTGCTGCATCCAACTTCATTACCAGGGTCCAACGGCATCGGGGAGCTAGGCCAAGAGGCTTTCTGTTTTCTCGATTGGCTTCAAAGCACTGGCTCTACCGTCTGGCAGGTTCTTCCTCTTGTGCCTCCAGGAAGAAAAT
CAGGTGAAGATGGTTCCCCTTATGCTGGACAGGATGCAAATTGTGGGAATACTCTCTTGATTTCTCTTGAGGAGCTTGTCAAAGATGGTCTTTTATCTAAACAGGAGCTTCCAGAACTGCTGCCTGTGAAGCGCATAGACTTTACCATGGTTGCCCAAGTCAAGGAACCTTTAATCGCAAAGGCTGCAAAGAGGCTCCTA
AATAGCAAGGGAGAACTGAATCAAGAGTTTCAAGTTTTCCAAAGATCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCACTATTTGCGGCCATTGACAATATTGATGATGCTTGCTCTTGGTCAGACTGGCCTCGACCTCTCAGGGATCGGCATCTTGTGGCCCTTGAAGTCATATACCAAAATCAGAAAGAATTTAT
AGACATATTTATAGCCCAACAGTTTTTGTTTCAAAGGCAATGGCAAGCAGTTCACAATTATGCTCAGAAGAAAGGAATTAGGATTATTGGAGATATGCCCATTTATGTTGGTGGTCATAGTGCAGATGTATGGGCCAATAGAAGCCAATTTCAACTGgtttgtacctgcactctaattaataatatgattcaatttctat
atgatcattgattagcactgaatttgttagagacactttgagaggaccatgggaagctgaaaacatgatggatttcaaattttagAGATACAAACTTTTCCATCTCCTGATGTTCCCCACAGAATAGAGCTGGGCGGCCGATTCTTGTCAGTGGTGTTCCTCCTGATGCATTCAGTAATACAGGACAACTATGGGGCAGG
TGATTATGACATCCAACATTACTCTTGCATTAATAGGTTGCTAGTCCAAGTTGGATTATGTTAAACTGAAATGGACTTAATAATCTTGGTTTATTTATTTTGGTGCTGATACATGTTAATTTCACAACTGCAGCTAATAAGTATATTTTTGAATTCTTGGTAAGTAGAATTCCTGACTATGATAGCTTCTTTACTGTACT
GTACTGAAAAAGAAGTTTAGTGAGCAGAAAACGTAATACCTTTGAAACAATTAAATTCTAATGTCACAGTTGAATGGGCGATAAGATAATTGTATTAATGTGCACAAATGACCAATGAAATTAGAATAGGTCAATGGGACTAGAAAATACAGTCGTTAAAAACCAGAAAGTGGGAGTGTTGAGATCACTCCTACCATAAC
CCCTACAACAAATCTCTTGGAATGGCAAATGAAAAACATGCCACTATCTCAAATCTTGCAATGAAAGAAACTGGAAAGAACCGTTTCCTAACTAAAACAGTAGCAAAGATACTTCTTCCCAAATCTCAACAATAAGTTTTTTAGGAAACCAAGATGGAAAGAATGCTTTGAAAATGATGAGAGTGGACAATAATGTAGAG
TTTGATGGAGCCAAACCGAGAGCAGTCCACTCTGATACCAAACATTATGATCATACACAATAAAGCATGAATAAACCTGCATACACACAATGTACACCTAACAAAGGCGTGGAGCACTACTATGTCATTGCCCTTGTAGGCCCACTACTAGGCTGACTTACTATTTTTGTGTTCATTTGACAACATAGATACCCCATTAG
GGTCATAACAATCAGGGTGGCAGAGTAGCCATTTATCTTGTTAGGGCAGGCTATCGAAAAACTCTGTAAACCTCCATGTCTGTGATTTCACAATCTGGCTGGCAGAGTACCCACATTTATTTTGTTAGGGCAAGCTATCAGGAAACTATAGGGCAAGCTATCAGGAAACTATCTGTCAATCTTGATATCTATGATTTCAC
AAACAGAAGAGATTCAAGTTCAGGTTTTGTAGCATGGATTTAATCAAGAAGGAATTTATACTTTATCT
Intron 2 GTTAGTGTAT ... GATACTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.89 | 39 | 11 | 1 |
| A2 | 1.98 | 50.7 | 1 | 0 |
| A3 | 23.92 | 45.3 | 14 | 2 |
| A4 | 25.25 | 36.3 | 12 | 0 |
| A5 | 24.39 | 22 | 7 | 0 |
| A6 | 24.14 | 48 | 15 | 0 |
| A7 | 24.54 | 91 | 29 | 0 |
| A8 | 24.51 | 89 | 28 | 0 |
| A9 | 25.94 | 93.3 | 32 | 0 |
| A10 | 11.3 | 66.3 | 8 | 0 |
>TRINITY_DN108798_c0_g1_i3 from sample A3 / Example spliced isoformATGTGTTATGATCTTGAGATTCTTAAGGCAAATTGGCAGATGTTCATGAATGACGAAATAATAAATTTGAAAGGGATAATGACGTGCGATGATCTTGAGATTTATAAGGCAAACTGTTAGATATTCATGAACTCACATATTGTGATCTTGAGCTATTAAGTTCCAGTCCCATCCACTCGATTTCATTTAAGCAATGGCCG
TGGTGAGTTCCAACCGTCTTTCGGCTCTAACAAATTCACTGAGGGATGATAGCATACATTCATTGCCCCCTTGTTTTGGTCATTTTCCAAAGCCTAGCATCTGCCACTTGCGAAACGTTCAGAAAAAGATAAGTCTGAGAACAAAGATGAGCAGCACATTGTCAAAAGATTTTGCCGATTATGAAATAGGAGAAGATCTG
CCTGAAGATTATGCGGATTGGCATCCTCGGAAGGATCCTTCAGATCGCAGAAGGGCAGGGATCTTGCTGCATCCAACTTCATTACCAGGGTCCAACGGCATCGGGGAGCTAGGCCAAGAGGCTTTCTGTTTTCTCGATTGGCTTCAAAGCACTGGCTCTACCGTCTGGCAGGTTCTTCCTCTTGTGCCTCCAGGAAGAAA
ATCAGGTGAAGATGGTTCCCCTTATGCTGGACAGGATGCAAATTGTGGGAATACTCTCTTGATTTCTCTTGAGGAGCTTGTCAAAGATGGTCTTTTATCTAAACAGGAGCTTCCAGAACTGCTGCCTGTGAAGCGCATAGACTTTACCATGGTTGCCCAAGTCAAGGAACCTTTAATCGCAAAGGCTGCAAAGAGGCTCC
TAAATAGCAAGGGAGAACTGAATCAAGAGTTTCAAGTTTTCCAAAGATCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCACTATTTGCGGCCATTGACAATATTGATGATGCTTGCTCTTGGTCAGACTGGCCTCGACCTCTCAGGGATCGGCATCTTGTGGCCCTTGAAGTCATATACCAAAATCAGAAAGAATTT
ATAGACATATTTATAGCCCAACAGTTTTTGTTTCAAAGGCAATGGCAAGCAGTTCACAATTATGCTCAGAAGAAAGGAATTAGGATTATTGGAGATATGCCCATTTATGTTGGTGGTCATAGTGCAGATGTATGGGCCAATAGAAGCCAATTTCAACTGAATAGAGCTGGGCGGCCGATTCTTGTCAGTGGTGTTCCTCC
TGATGCATTCAGTAATACAGGACAACTATGGGGCAGCCCCTTGTATGATTGGAAAAACATGGAAAAAGAGGGTTTCTCATGGTGGGTACAACGCATGAACCGGGCATTTGACCTTTTTGATGAATTTCGAATTGACCATTTCCGAGGACTTTCTGGCTATTGGGCTGTTCCTGCAGAGTCAGAGACAGCCATGGGAGGAA
CATGGAAGGTGGGTCCACGGGAGGCATTGTTTAAAGCTATCAACAAAGCGGTTGGAAAGATAGATATAATTGCTGAAGATCTGGTTCTTCCTCTTGTGCCTCCAGGAAGAAAATCAGGTGAAGATGGTTCCCCT
>TRINITY_DN108798_c0_g1_i4 from sample A3 / Example unspliced isoform:TTGTCAGTGGTGTTCCTCCTGATGCATTCAGTAATACAGGACAACTATGGGGCAGCCCCTTGTATGATTGGAAAAACATGGAAAAAGAGGGTTTCTCATGGTGGGTACAACGCATGAACCGGGCATTTGACCTTTTTGATGAATTTCGAATTGACCATTTCCGAGGACTTTCTGGCTATTGGGCTGTTCCTGCAGAGTCA
GAGACAGCCATGGGAGGAACATGGAAGgttagtgtatacaatatttgatcttatgttgcttaatctattgttgcacttttactaagtttatcatgtcattggatactttagGTGGGTCCACGGGAGGCATTGTTTAAAGCTATCAACAAAGCGGTTGGAAAGATAGATATAATTGCTGAAGATCTGG
Intron 3 GTTTGTACCT ... TTCCCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.64 | 52 | 17 | 12.7 |
| A2 | 25.42 | 44 | 15 | 11.7 |
| A3 | 12.99 | 67 | 10 | 18 |
| A4 | 17.5 | 66 | 14 | 17.3 |
| A5 | 21.74 | 18 | 5 | 7.3 |
| A6 | 8.96 | 61 | 6 | 21.3 |
| A7 | 8.78 | 135 | 13 | 34 |
| A8 | 11.59 | 61 | 8 | 16 |
| A9 | 15.83 | 101 | 19 | 21.3 |
| A10 | 15.13 | 101 | 18 | 24 |
>TRINITY_DN115806_c0_g1_i4 from sample A1 / Example spliced isoformGTGTTATGATCTTGAGATTCTTAAGGCAAATTGGCAGATGTTCATGAATGACGAAATAATAAATTTGAAAGGGATAATGACGTGCGATGATCTTGAGATTTATAAGGCAAACTGTTAGATATTCATGAACTCACATATTGTGATCTTGAGCTATTAAGTTCCAGTCCCATCCACTCGATTTCATTTAAGCAATGGCCGTG
GTGAGTTCCAACCGTCTTTCGGCTCTAACAAATTCACTGAGGGATGATAGCATACATTCATTGCCCCCTTGTTTTGGTCATTTTCCAAAGCCTAGCATCTGCCACTTGCGAAACGTTCAGAAAAAGATAAGTCTGAGAACAAAGATGAGCAGCACATTGTCAAAAGATTTTGCCGATTATGAAATAGGAGAAGATCTGCC
TGAAGATTATGCGGATTGGCATCCTCGGAAGGATCCTTCAGATCGCAGAAGGGCAGGGATCTTGCTGCATCCAACTTCATTACCAGGGTCCAACGGCATCGGGGAGCTAGGCCAAGAGGCTTTCTGTTTTCTCGATTGGCTTCAAAGCACTGGCTCTACCGTCTGGCAGGTTCTTCCTCTTGTGCCTCCAGGAAGAAAAT
CAGGTGAAGATGGTTCCCCTTATGCTGGACAGGATGCAAATTGTGGGAATACTCTCTTGATTTCTCTTGAGGAGCTTGTCAAAGATGGTCTTTTATCTAAACAGGAGCTTCCAGAACTGCTGCCTGTGAAGCGCATAGACTTTACCATGGTTGCCCAAGTCAAGGAACCTTTAATCGCAAAGGCTGCAAAGAGGCTCCTA
AATAGCAAGGGAGAACTGAATCAAGAGTTTCAAGTTTTCCAAAGATCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCACTATTTGCGGCCATTGACAATATTGATGATGCTTGCTCTTGGTCAGACTGGCCTCGACCTCTCAGGGATCGGCATCTTGTGGCCCTTGAAGTCATATACCAAAATCAGAAAGAATTTAT
AGACATATTTATAGCCCAACAGTTTTTGTTTCAAAGGCAATGGCAAGCAGTTCACAATTATGCTCAGAAGAAAGGAATTAGGATTATTGGAGATATGCCCATTTATGTTGGTGGTCATAGTGCAGATGTATGGGCCAATAGAAGCCAATTTCAACTGAATAGAGCTGGGCGGCCGATTCTTGTCAGTGGTGTTCCTCCTG
ATGCATTCAGTAATACAGGACAACTATGGGGCAGCCCCTTGTATGATTGGAAAAACATGGAAAAAGAGGGTTTCTCATGGTGGGTACAACGCATGAACCGGGCATTTGACCTTTTTGATGAATTTCGAATTGACCATTTCCGAGGACTTTCTGGCTATTGGGCTGTTCCTGCAGAGTCAGAGACAGCCATGGGAGGAACA
TGGAAGGTGGGTCCACGGGAGGCATTGTTTAAAGCTATCAACAAAGCGGTTGGAAAGATAGATATAATTGCTGAAGATCTGGGTGTTATTACGGATGATGTTGTACAATTACGCAAAGCTATCGGTGCACCTGGAATGGCAGTTCTCCAATTCGCTTTTGGGAGCGATTCAAAGAATCCCCATCTTCCTCACAATCATGA
GCTTGATCAAGTAGTATATACTGGAACTCATGACAATGATACGATTTTGGGCTGGTGGCAAAGCCTACCAGAAGAGGAGAAAGAAACTGTCATGAAATATTTGAAGATAACTAATGGAAATGAGATATCTTGGAAACTTATCGACGCTGCGCTCTCTTCGGTTGCCAGAACATCCATCATCCCTATGCAAGATGTTTTAG
GACTAGATAGTTCAGCTCGAATGAATACTCCAGCAACACAATTTGGAAATTGGGGGTGGCGATTGGACATTGAAGATTTTGATAAACTGGATAAAGAAGCAGAAAAACTTCACTCGTTGATGACCTTGTATAATAGATTGTAATGCAAAGGAATTATTGGGTGTGTTTTGACATTGGAAATTCTTTCTAGATAAATGCAG
TAAGCTATTCTAGTTGTTGGCAGCCCCAGAAAGGTATGTCAAATTGTTGCTGTTTGCATGAACGAGTTGGTATGAACAATCAAAATAAACCTTATCATCTTTCTTCATCAGCATATGTCAGATTTACAAGCATCTGCATATATAGTAACATGCAGGGGCATAAAGCAAGGGTCATTGTGCTGAGAGAAGCAAGGTGCTCT
ACGGCCTGGATGGGGGAAGATCATCAACTCTCTGTTTGTGCATGTAATGATGTAACACTAAAGAAATAAAAGAAAGAGCTGATGTTTTATTTTACTTCGTTACCATAGAGTCAAAAAAAGAAGGAAAGAAAAAAAGAGCCGATGTATTGTTTATCTTAACTAAGAAAACAGCTATAAATAAAGTAGGATAAAACCATTTT
AACGTTAGATGTTTTAAGTGTGGAGAGTGCTTAAAAATATGTTGAGGTATGCAACTTGAATTTATTGATCCCTCTTGTTGCTTAATAGATCCATGGTTTAAATTATGCTAGT
>TRINITY_DN115806_c0_g1_i1 from sample A1 / Example unspliced isoform:GTGTTATGATCTTGAGATTCTTAAGGCAAATTGGCAGATGTTCATGAATGACGAAATAATAAATTTGAAAGGGATAATGACGTGCGATGATCTTGAGATTTATAAGGCAAACTGTTAGATATTCATGAACTCACATATTGTGATCTTGAGCTATTAAGTTCCAGTCCCATCCACTCGATTTCATTTAAGCAATGGCCGTG
GTGAGTTCCAACCGTCTTTCGGCTCTAACAAATTCACTGAGGGATGATAGCATACATTCATTGCCCCCTTGTTTTGGTCATTTTCCAAAGCCTAGCATCTGCCACTTGCGAAACGTTCAGAAAAAGATAAGTCTGAGAACAAAGATGAGCAGCACATTGTCAAAAGATTTTGCCGATTATGAAATAGGAGAAGATCTGCC
TGAAGATTATGCGGATTGGCATCCTCGGAAGGATCCTTCAGATCGCAGAAGGGCAGGGATCTTGCTGCATCCAACTTCATTACCAGGGTCCAACGGCATCGGGGAGCTAGGCCAAGAGGCTTTCTGTTTTCTCGATTGGCTTCAAAGCACTGGCTCTACCGTCTGGCAGGTTCTTCCTCTTGTGCCTCCAGGAAGAAAAT
CAGGTGAAGATGGTTCCCCTTATGCTGGACAGGATGCAAATTGTGGGAATACTCTCTTGATTTCTCTTGAGGAGCTTGTCAAAGATGGTCTTTTATCTAAACAGGAGCTTCCAGAACTGCTGCCTGTGAAGCGCATAGACTTTACCATGGTTGCCCAAGTCAAGGAACCTTTAATCGCAAAGGCTGCAAAGAGGCTCCTA
AATAGCAAGGGAGAACTGAATCAAGAGTTTCAAGTTTTCCAAAGATCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCACTATTTGCGGCCATTGACAATATTGATGATGCTTGCTCTTGGTCAGACTGGCCTCGACCTCTCAGGGATCGGCATCTTGTGGCCCTTGAAGTCATATACCAAAATCAGAAAGAATTTAT
AGACATATTTATAGCCCAACAGTTTTTGTTTCAAAGGCAATGGCAAGCAGTTCACAATTATGCTCAGAAGAAAGGAATTAGGATTATTGGAGATATGCCCATTTATGTTGGTGGTCATAGTGCAGATGTATGGGCCAATAGAAGCCAATTTCAACTGgtttgtacctgcactctaattaataatatgattcaatttctat
atgatcattgattagcactgaatttgttagagacactttgagaggaccatgggaagctgaaaacatgatggatttcaaattttagagatacaaacttttccatctcctgatgttccccacagAATAGAGCTGGGCGGCCGATTCTTGTCAGTGGTGTTCCTCCTGATGCATTCAGTAATACAGGACAACTATGGGGCAGG
TGATTATGACATCCAACATTACTCTTGCATTAATAGGTTGCTAGTCCAAGTTGGATTATGTTAAACTGAAATGGACTTAATAATCTTGGTTTATTTATTTTGGTGCTGATACATGTTAATTTCACAACTGCAGCTAATAAGTATATTTTTGAATTCTTGGTAAGTAGAATTCCTGACTATGATAGCTTCTTTACTGTACT
GTACTGAAAAAGAAGTTTAGTGAGCAGAAAACGTAATACCTTTGAAACAATTAAATTCTAATGTCACAGTTGAATGGGCGATAAGATAATTGTATTAATGTGCACAAATGACCAATGAAATTAGAATAGGTCAATGGGACTAGAAAATACAGTCGTTAAAAACCAGAAAGTGGGAGTGTTGAGATCACTCCTACCATAAC
CCCTACAACAAATCTCTTGGAATGGCAAATGAAAAACATGCCACTATCTCAAATCTTGCAATGAAAGAAACTGGAAAGAACCGTTTCCTAACTAAAACAGTAGCAAAGATACTTCTTCCCAAATCTCAACAATAAGTTTTTTAGGAAACCAAGATGGAAAGAATGCTTTGAAAATGATGAGAGTGGACAATAATGTAGAG
TTTGATGGAGCCAAACCGAGAGCAGTCCACTCTGATACCAAACATTATGATCATACACAATAAAGCATGAATAAACCTGCATACACACAATGTACACCTAACAAAGGCGTGGAGCACTACTATGTCATTGCCCTTGTAGGCCCACTACTAGGCTGACTTACTATTTTTGTGTTCATTTGACAACATAGATACCCCATTAG
GGTCATAACAATCAGGGTGGCAGAGTAGCCATTTATCTTGTTAGGGCAGGCTATCGAAAAACTCTGTAAACCTCCATGTCTGTGATTTCACAATCTGGCTGGCAGAGTACCCACATTTATTTTGTTAGGGCAAGCTATCAGGAAACTATAGGGCAAGCTATCAGGAAACTATCTGTCAATCTTGATATCTATGATTTCAC
AAACAGAAGAGATTCAAGTTCAGGTTTTGTAGCATGGATTTAATCAAGAAGGAATTTATACTTTATCT
Intron 4 GTGATTTATA ... GAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.67 | 30 | 6 | 2 |
| A2 | 12 | 44 | 6 | 0 |
| A3 | 16.67 | 40 | 8 | 0 |
| A4 | 8.11 | 34 | 3 | 0 |
| A5 | 0 | 18 | 0 | 0 |
| A6 | 20.9 | 53 | 14 | 2 |
| A7 | 16.82 | 89 | 18 | 4 |
| A8 | 15.69 | 86 | 16 | 0 |
| A9 | 14.71 | 87 | 15 | 0 |
| A10 | 22.62 | 65 | 19 | 0 |
>TRINITY_DN115806_c0_g1_i4 from sample A1 / Example spliced isoformGTGTTATGATCTTGAGATTCTTAAGGCAAATTGGCAGATGTTCATGAATGACGAAATAATAAATTTGAAAGGGATAATGACGTGCGATGATCTTGAGATTTATAAGGCAAACTGTTAGATATTCATGAACTCACATATTGTGATCTTGAGCTATTAAGTTCCAGTCCCATCCACTCGATTTCATTTAAGCAATGGCCGTG
GTGAGTTCCAACCGTCTTTCGGCTCTAACAAATTCACTGAGGGATGATAGCATACATTCATTGCCCCCTTGTTTTGGTCATTTTCCAAAGCCTAGCATCTGCCACTTGCGAAACGTTCAGAAAAAGATAAGTCTGAGAACAAAGATGAGCAGCACATTGTCAAAAGATTTTGCCGATTATGAAATAGGAGAAGATCTGCC
TGAAGATTATGCGGATTGGCATCCTCGGAAGGATCCTTCAGATCGCAGAAGGGCAGGGATCTTGCTGCATCCAACTTCATTACCAGGGTCCAACGGCATCGGGGAGCTAGGCCAAGAGGCTTTCTGTTTTCTCGATTGGCTTCAAAGCACTGGCTCTACCGTCTGGCAGGTTCTTCCTCTTGTGCCTCCAGGAAGAAAAT
CAGGTGAAGATGGTTCCCCTTATGCTGGACAGGATGCAAATTGTGGGAATACTCTCTTGATTTCTCTTGAGGAGCTTGTCAAAGATGGTCTTTTATCTAAACAGGAGCTTCCAGAACTGCTGCCTGTGAAGCGCATAGACTTTACCATGGTTGCCCAAGTCAAGGAACCTTTAATCGCAAAGGCTGCAAAGAGGCTCCTA
AATAGCAAGGGAGAACTGAATCAAGAGTTTCAAGTTTTCCAAAGATCACCTGAAATTTTAGGGTGGCTTGAAGATGCGGCACTATTTGCGGCCATTGACAATATTGATGATGCTTGCTCTTGGTCAGACTGGCCTCGACCTCTCAGGGATCGGCATCTTGTGGCCCTTGAAGTCATATACCAAAATCAGAAAGAATTTAT
AGACATATTTATAGCCCAACAGTTTTTGTTTCAAAGGCAATGGCAAGCAGTTCACAATTATGCTCAGAAGAAAGGAATTAGGATTATTGGAGATATGCCCATTTATGTTGGTGGTCATAGTGCAGATGTATGGGCCAATAGAAGCCAATTTCAACTGAATAGAGCTGGGCGGCCGATTCTTGTCAGTGGTGTTCCTCCTG
ATGCATTCAGTAATACAGGACAACTATGGGGCAGCCCCTTGTATGATTGGAAAAACATGGAAAAAGAGGGTTTCTCATGGTGGGTACAACGCATGAACCGGGCATTTGACCTTTTTGATGAATTTCGAATTGACCATTTCCGAGGACTTTCTGGCTATTGGGCTGTTCCTGCAGAGTCAGAGACAGCCATGGGAGGAACA
TGGAAGGTGGGTCCACGGGAGGCATTGTTTAAAGCTATCAACAAAGCGGTTGGAAAGATAGATATAATTGCTGAAGATCTGGGTGTTATTACGGATGATGTTGTACAATTACGCAAAGCTATCGGTGCACCTGGAATGGCAGTTCTCCAATTCGCTTTTGGGAGCGATTCAAAGAATCCCCATCTTCCTCACAATCATGA
GCTTGATCAAGTAGTATATACTGGAACTCATGACAATGATACGATTTTGGGCTGGTGGCAAAGCCTACCAGAAGAGGAGAAAGAAACTGTCATGAAATATTTGAAGATAACTAATGGAAATGAGATATCTTGGAAACTTATCGACGCTGCGCTCTCTTCGGTTGCCAGAACATCCATCATCCCTATGCAAGATGTTTTAG
GACTAGATAGTTCAGCTCGAATGAATACTCCAGCAACACAATTTGGAAATTGGGGGTGGCGATTGGACATTGAAGATTTTGATAAACTGGATAAAGAAGCAGAAAAACTTCACTCGTTGATGACCTTGTATAATAGATTGTAATGCAAAGGAATTATTGGGTGTGTTTTGACATTGGAAATTCTTTCTAGATAAATGCAG
TAAGCTATTCTAGTTGTTGGCAGCCCCAGAAAGGTATGTCAAATTGTTGCTGTTTGCATGAACGAGTTGGTATGAACAATCAAAATAAACCTTATCATCTTTCTTCATCAGCATATGTCAGATTTACAAGCATCTGCATATATAGTAACATGCAGGGGCATAAAGCAAGGGTCATTGTGCTGAGAGAAGCAAGGTGCTCT
ACGGCCTGGATGGGGGAAGATCATCAACTCTCTGTTTGTGCATGTAATGATGTAACACTAAAGAAATAAAAGAAAGAGCTGATGTTTTATTTTACTTCGTTACCATAGAGTCAAAAAAAGAAGGAAAGAAAAAAAGAGCCGATGTATTGTTTATCTTAACTAAGAAAACAGCTATAAATAAAGTAGGATAAAACCATTTT
AACGTTAGATGTTTTAAGTGTGGAGAGTGCTTAAAAATATGTTGAGGTATGCAACTTGAATTTATTGATCCCTCTTGTTGCTTAATAGATCCATGGTTTAAATTATGCTAGT
>TRINITY_DN115806_c0_g1_i3 from sample A1 / Example unspliced isoform:CTCTAATGAATTCAGAGAAAGTTAGTTTTTAGCACAGAAAATGGTGAGGGCATACAAATTCTGGGCTGCTGTATGGAGGCTGTCCTTTCTCTTTGGTTAATATATGCTTAGAACTTGTTAGCTTGTTAATTTCTCTGTCATATGAAATCTAAGCTTTCCTACAAACATGTTTTTATATACAGCCCCTTGTATGATTGGAA
AAACATGGAAAAAGAGGGTTTCTCATGGTGGGTACAACGCATGAACCGGGCATTTGACCTTTTTGATGAATTTCGAATTGACCATTTCCGAGGACTTTCTGGCTATTGGGCTGTTCCTGCAGgtgatttatattatctttctattttcaaccatgggtatttctgttcaactcttgcaaattatcttggaaagattaaat
aacaccttatgtgaatgtacagAGTCAGAGACAGCCATGGGAGGAACATGGAAGGTGGGTCCACGGGAGGCATTGTTTAAAGCTATCAACAAAGCGGTTGGAAAGATAGATATAATTGCTGAAGATCTGGTATCGTTTTCTATCTACCATCTTTAGAAAATCATATTTTCTTAATGGGTGTGCTAAAACTTGGTTAGTGA
GACGTGGTTATACTTTTCTTCTTATGTATGTGTTATGTCTTGAAATACATTTGTTGGAGAAATTAGTTATATTTTAGTTTTAGAAATACATGCATCCTATATTACATTGAATTAATAATATGATTACATCACAGAAATGACTACCTGACTAGGCATTAATAATTTTGTCTTCTCTTCCAACATAGGTTGTATTACCGTTC
AAACTAGTAGTTTAGGCTTGCTAGTGAATGGCAATCACATTAGAG