sp|Q8LG95|PP332_ARATH ----> Pentatricopeptide repeat-containing protein At4g21190

Intron 1 GTGTGCTTTG ... AATCATTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	64.71	12	21	23
A2	54.17	22	15	37
A3	55.22	15	15	22
A4	55.22	15	20	17
A5	54.84	7	12	5
A6	50.88	14	4	25
A7	66.93	21	17	68
A8	58.62	30	23	62
A9	63.87	28	23	76
A10	59.63	22	15	50

>TRINITY_DN109227_c0_g2_i5 from sample A4 / Example spliced isoform

AATGACAGGAGCTGAAGATATTGTGAGGTCTAGTAATAGCTGGTTATGCTGTACAGGAGTTCATCTTGTGATGGTTTCAGAATTAGTGAGAACAAAGATAGTGAAATCTGATCATATAATTATTGAAACAACAGATCAAGAATGTTTTCTGGAAGGTGTCATACGACTTGAGGGCATAAAATGCTTTGATCCTGTGGTGG
CGGAAAAACATTTTATTGAGTGCCTTGAGAAGTTACTGGCATCATTACATAGTGCTTGTGGACATGGTGGTTTTAAGGTTCTTACATCATGTAATGAACACACACAAGTTCATACAAAGTCTGCAGATGCATGGTTGCCACAATCAAAGAGTCCCAAGGGGGCGGTTACTACATTGGAACCACTTAAAGGAATTCAATTT
GTTGCTTCTATAGGCAGGAGGAAGTTTCCTTCTTGGATATCAAAGTGGATGTTGAGCAAGGGCCAAGGTAAAACCATGGGAACCCACTACATGTTATTGAATGCTCTTGCCAATGAGCGAAGAATAGAAGAAGCAGAGGAACTGTGGATGGAAATATTTAATAGGCATATGGAATATGTTCCACGCATGTTCTTTACTCG
TATCATCACTATGTATGAGCGAAATAACATGACTGAAAAGTTGCTCGAGGTGTTTGCAGATATGGAAGAGCTGGGTGTGACGCCAGAACGTTTGGCTGTTGTTAAGATTGCAAATACATTCAAGAATATGGGGATGATGGACAAGTATGAAAAAGTATTTAAGAAGTATCCTGAAACAGAATGGGAGTACCGCTATCGTA
AGGGGAATCGTTACAGAGTACTAGTGCCTAAATCACAAGATTCTGGTAAGAGAATATCTAAAATTAGG

>TRINITY_DN109227_c0_g2_i6 from sample A4 / Example unspliced isoform:

AATGACAGGAGCTGAAGATATTGTGAGGTCTAGTAATAGCTGGTTATGCTGTACAGGAGTTCATCTTGTGATGGTTTCAGAATTAGTGAGAACAAAGATAGTGAAATCTGATCATATAATTATTGAAACAACAGATCAAGAATGTTTTCTGGAAGGTGTCATACGACTTGAGGGCATAAAATGCTTTGATCCTGTGGTGG
CGGAAAAACATTTTATTGAGTGCCTTGAGAAGTGTGGACATGGTGGTTTTAAGGTTCTTACATCATGTAATGAACACACACAAGTTCATACAAAGTCTGCAGATGCATGGTTGCCACAATCAAAGAGTCCCAAGGGGGCGGTTACTACATTGGAACCACTTAAAGGAATTCAATTTGTTGCTTCTATAGGCAGGAGGAAG
TTTCCTTCTTGGgtgtgctttgcaggagggccaaggccaaggaatcctagagtatggaaagcaagaacaaaaattggtactgtgtcgaaatcagaaaagcttgttgaatatgtaaagagattgtccaatgtcaaggaagaagtttatggtgctctagattcttttattgcatgggaggtagagtttcctcttattgtaat
aaagaaggctttgagaaaacttcaggctgagaaggagtggaaacgaatcattcagATATCAAAGTGGATGTTGAGCAAGGGCCAAGGTAAAACCATGGGAACCCACTACATGTTATTGAATGCTCTTGCCAATGAGCGAAGAATAGAAGAAGCAGAGGAACTGTGGATGGAAATATTTAATAGGCATATGGAATATGTTC
CACGCATGTTCTTTACTCGTATCATCACTATGTATGAGCGAAATAACATGACTGAAAAGTTGCTCGAGGTGTTTGCAGATATGGAAGAGCTGGGTGTGACGCCAGAACGTTTGGCTGTTGTTAAGATTGCAAATACATTCAAGAATATGGGGATGATGGACAAGTATGAAAAAGTATTTAAGAAGTATCCTGAAACAGAA
TGGGAGTACCGCTATCGTAAGGGGAATCGTTACAGAGTACTAGTGCCTAAATCACAAGATTCTGGGGGGAATTTGATACATCAAGATGACATCACCCCAAATGTTGCAAAGGATGATGAGTCTACTATACATGATTTCCATACAGCTGAGGTTGCAAATCAGCAATATGAAGTCTCTCAGTTACTCGAGGAGAAGGAGAA
TTTCATACATCAAGATGACAGCACCCTGAATGTTGCAAAGTATGATGAGTCTGCTATACATGATTTTCATACAGTCGAGGTTACCAAAAAGCAACATGAAGTCTCTGAGTTACTGGAGGACAGGGAGAATTTGATACATCAAGATGACAACACCCCAAATGTTGCAGAGGACGGTGTTTCTACTATACATGATTTCCATG
CAGCCGGGGTTAGAAAATAGCAATATGAAGTCTCTCAGTTACTTGAGGAAAAGGATCCTACGAGGATATCTATCTCAATTTGACAAGTTCTGAAGGTAGCTGCATACCGATGAACACTTAAGATATCCTGCTGAAATAAAATCAGCACTTGTACATCATAATACTGAGTCACTGCAGTCTCTTAACCTCCACTTTCTAAA
ATGTTGTGTATTGCACTGCACTTGTGATCTATGTTCTTCATCAAGCATTATAAATGTAAAATATGCTTGGACAATAATATCCATTGTATGTGCATGTCCATTTGTCCTGCCATGTGAAAAGTTGAATGGAGAAATCCCATTTTGGTTCTTTGATACAAAATATAGAAATTGTTGTGCATTCTAAACAACGAGTTAAAGTC
TTTGATAGTTGCAAGCCAG

Intron 2 GTATAGTTGG ... TTGATATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75	1	2	4
A2	100	0	2	4
A3	100	0	3	5
A4	100	0	7	1
A5	100	0	1	7
A6	71.43	3	5	10
A7	44.44	5	4	4
A8	71.43	1	3	2
A9	39.13	7	3	6
A10	71.43	1	2	3

>TRINITY_DN42280_c1_g5_i9 from sample A8 / Example spliced isoform

TTTGGATGCCCGATACCTCGTCACAGTAGATGCACTGACCAAAAGTGACTCACGTGAGAATCTTGATTGGCAGACTTCCTACAGAGTTATTCCGTCCTCACTTGCAATCGCCTCGATAACCTTTGAAGATGAACTGACCCACGCTTCGTATGAACAAGCAGCGGTTCGATAGGGTGATTTTCTTGTCGGCGGTCTGGACA
GTGGTCACGATGCACAAGTGGCAACGGTTATGTGCAACAGAAATCATGAATGGTGTGCTGGCGACTGGCCATTTTGAATTTGTGACAGTTTCCTTGACTGTCCTTAAACTCACTAGTGAACAGATATGACTCCCTTTTTGGCAGTGGTTATAGCAGTTAGAATTCACACGATTTCAATTGGGAATGACTTGCGATTTTGC
TTGGTGGCTATTCTTCTCACCTGTGGACAGTTACAACTTTAAATTGGCGGCAAATCGATTGACGACTATCACGACAATTAATAACTTTGTCAACAATTAATCAGAACAGATAATGCCAACGAATGAATGTTGGTACGAATGCTGTAATGATGGTCTTCTAACTAGTGGCAAACAAACCGTTTTCTCCCTTGACACTTATT
GACAATTTCAAAGTGCCGATGGTTTTCTTCTCATAACTTGTCGCGGGATGACTTTTTCTTTCTCATATTTTCCTTCTAGCAGACTGATCCTTTCTTTCAACAGAATTTCTGAACTTGGCCAAAGGCCGATCTGGTGGTCAAAGACCCAGATCAGAGATCCTCTGAAAAAAATATGGGTAGCCAAAGGCTGGATTAGACAA
AGTTTGAAAAGTAATGGCCAAAGGCCGGATTAGCACACAGCTCTGATACCAATGAAGCGAACAATATTCGTTTCCTGAATATGAACAGTAATTCAATAGCTGAATATCCAATTTCATTCGTTTCCTGAATATGTACAGTAATTCAATAGCTGAATATCCAATTTCATTCGTTTCCTGAATATGTACAGTAATT

>TRINITY_DN42280_c1_g5_i5 from sample A8 / Example unspliced isoform:

TTTGGATGCCCGATACCTCGTCACAGTAGATGCACTGACCAAAAGTGACTCACGTGAGAATCTTGATTGGCAGACTTCCTACAGAGTTATTCCGTCCTCACTTGCAATCGCCTCGATAACCTTTGAAGATGAACTGACCCACGCTTCGTATGAACAAGCAGCGGTTCGATAGGGTGATTTTCTTGTCGGCGGTCTGGACA
GTGGTCACGATGCACAAGTGGCAACGGTTATGTGCAACAGAAATCATGAATGGTGTGCTGGCGACTGGCCATTTTGAATTTGTGACAGTTTCCTTGACTGTCCTTAAACTCACTAGTGAACAGATATGACTCCCTTTTTGGCAGTGGTTATAGCAGTTAGAATTCACACGATTTCAATTGGGAATGACTTGCGATTTTGC
TTGGTGGCTATTCTTCTCACCTGTGGACAGTTACAACTTTAAATTGGCGGCAAATCGATTGACGACTATCACGACAATTAATAACTTTGTCAACAATTAATCAGAACAGATAATGCCAACGAATGAATGTTGGTACGAATGCTGTAATGATGGTCTTCTAACTAGTGGCAAACAAACCGTTTTCTCCCTTGACACTTATT
GACAATTTCAAAGTGCCGATGgtatagttgggaatggcggcttaactgtttcgtaatttctttctttccttgtgcttgctaataacctactgacacttttctttgatattagGTTTTCTTCTCATAACTTGTCGCGGGATGACTTTTTCTTTCTCATATTTTCCTTCTAGCAGACTGATCCTTTCTTTCAACAGAATTTC
TGAACTTGGCCAAAGGCCGATCTGGTGGTCAAAGACCCAGATCAGAGATCCTCTGAAAAAAATATGGGTAGCCAAAGGCTGGATTAGACAAAGTTTGAAAAGTAATGGCCAAAGGCCGGATTAGCACACAGCTCTGATACCAATGAAGCGAACAATATTCGTTTCCTGAATATGAACAGTAATTCAATAGCTGAATATCC
AATTTCATTCGTTTCCTGAATATGTACAGTAATTTAATAACTGAATATCCAATTTAAGTAGAACAACCGGGTATAATCCATAAAGGACAAGTATGTATTAAATGTATAAAATATGAGATGGTGAGATAAAATGACCATGTGACAGTGTACTTATAGCATTGACTGGCCACCATGGTAAGCCATGTCTTTTCAATAGGTCA
TGTCTTTTAGATATGATGTGCCA

Intron 3 GTACGAATGC ... TAGTATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	9	0	9
A2	50	20	1	20
A3	50	9	2	9
A4	39.13	14	3	9
A5	50	4	0	4
A6	46.43	15	1	13
A7	46.94	26	8	23
A8	50.94	26	3	27
A9	42.86	32	11	24
A10	38.78	30	8	19

>TRINITY_DN38553_c0_g1_i2 from sample A6 / Example spliced isoform

AAGTGACGCACGTGAGAATCTTGATTGGCAGACTTCCTACAGAGTTATTCCGTCCTCACTTGCAATCGCCTCGATAACCTTTGAAGATGAACTGACCCACGCTTCGTATGAACAAGCAGCGGTTCGATAGGGTGATTTTCTTGTCGGCGGTCTGGACAGTGGTCACGATGCACAAGTGGCAACGGTTATGTGCAACAGAA
ATCATGAATGGTGTGCTGGCGACTGGCCATTTTGAATTTGTGACAGTTTCCTTGACTGTCCTTAAACTCACTAGTGAACAGATATGACTCCCTTTTTGGCAGTGGTTATAGCAGTTAGAATTCACACGATTTCAATTGGGAATGACTTGCGATTTTGCTTGGTGGCTATTCTTCTCACCTGTGGACAGTTACAACTTTAA
ATTGGCGGCAAATCGATTGACGACTATCACGACAATTAATAACTTTGTCAACAATTAATCAGAACAGATAATGCCAACGAATGAATGTTGATATCAAAGTGGATGTTGAGCAAGGGCCAAGGTAAAACCATGGGAACCCACTACATGTTATTGAATGCTCTTGCCAATGAGCGAAGAATAGAAGAAGCAGAGGAACTGTG
GATGGAAATATTTAATAGGCATATGGAATATGTTCCACGCATGTTCTTTACTCGTATCATCACTATGTATGAGCGAAATAACATGACTGAAAAGTTGCTCGAGGTGTTTGCAGATATGGAAGAGCTGGGTGTGACGCCAGAACGTTTGGCTGTTGTTAAGATTGCAAATACATTCAAGAATATGGGGATGATGGACAAGT
ATGAAAAAGTATTTAAGAAGTATCCTGAAACAGAATGGGAGTACCGCTATCGTAAGGGGAATCGTTACAGAGTACTAGTGCCTAAATCACAAGATTCTGGGGGGAATTTGATACATCAAGATGACATCACCCCAAATGTTGCAAAGGATGATGAGTCTACTATACATGATTTCCATACAGCTGAGGTTGCAAATCAGCAA
TATGAAGTCTCTCAGTTACTCGAGGAGAAGGAGAATTTCATACATCAAGATGACAGCACCCTGAATGTTGCAAAGTATGATGAGTCTGCTATACATGATTTTCATACAGTCGAGGTTACCAAAAAGCAACATGAAGTCTCTGAGTTACTGGAGGACAGGGAGAATTTGATACATCAAGATGACAACACCCCAAATGTTGC
AGAGGACGGTGTTTCTACTATACATGATTTCCATGCAGCCGGGGTTAGAAAATAGCAATATGAAGTCTCTCAGTTACTTGAGGAAAAGGATCCTACGAGGATATCTATCTCAATTTGACAAGTTCTGAAGGTAGCTGCATACCGATGAACACTTAAGATATCCTGCTGAAATAAAATCAGCACTTGTACATCATAATACT
GAGTCACTGCAGTCTCTTAACCTCCACTTTCTAAAATGTTGTGTATTGCACTGCACTTGTGATCTATGTTCTTCATCAAGCATTATAAATGTAAAATATGCTTGGACAATAATATCCATTGTATGTGCATGTCCATTTGTCCTGCCATGTGAAAAGTTGAATGGAGAAATCCCATTTTGGTTCTTTGATACAAAATATAG
AAATTGTTGTGCATTCTAAACAACGAGTTAAAGTCTTTGATAGTTGCAAGCCAGATGGTCATGATGTAGAGAGAATTTGGTCGAGACATAGTGCTCAGAAAAACTTACTTTTCTTAGTGGTCTTAAAACAAGGCGTGTTCCTGTCTTTCTACTACTTTTGGTTATATATCTGCTCGCCATTCTTGC

>TRINITY_DN38553_c0_g1_i3 from sample A6 / Example unspliced isoform:

AAGTGACGCACGTGAGAATCTTGATTGGCAGACTTCCTACAGAGTTATTCCGTCCTCACTTGCAATCGCCTCGATAACCTTTGAAGATGAACTGACCCACGCTTCGTATGAACAAGCAGCGGTTCGATAGGGTGATTTTCTTGTCGGCGGTCTGGACAGTGGTCACGATGCACAAGTGGCAACGGTTATGTGCAACAGAA
ATCATGAATGGTGTGCTGGCGACTGGCCATTTTGAATTTGTGACAGTTTCCTTGACTGTCCTTAAACTCACTAGTGAACAGATATGACTCCCTTTTTGGCAGTGGTTATAGCAGTTAGAATTCACACGATTTCAATTGGGAATGACTTGCGATTTTGCTTGGTGGCTATTCTTCTCACCTGTGGACAGTTACAACTTTAA
ATTGGCGGCAAATCGATTGACGACTATCACGACAATTAATAACTTTGTCAACAATTAATCAGAACAGATAATGCCAACGAATGAATGTTGgtacgaatgctgtaatgatggtcttctaactagtggcaaacaaaccgttttctcccttgacacttattgacaatttcaaagtgccgatggtatagttgggaatggcggct
taactgtttcgtaatttctttctttccttgtgcttgctgataaactactgacacttttctttaatattaggttttcttctcataacttgtagcgggatgactttttctttctcatattttccttctagcagagtgatcctttctttcaacagaatttctgaacttggccaaaggccgatctggtggtcaaagacccagat
cagagatcctctgaaaaaaatatgggtagccaaaggctggattagacaaagtttgaaaagtaatggccaaaggccggattagcacacagctctgataccaatgaagcgaacaatattcgtttcctgaatatgaacagtaattcaatagctgaatatccaatttcattcgtttcctgaatatgtacagtaatttaataact
gaatatccaatttaagtagaacaaccgggtataatccataaaggacaagtatgtattaaatgtataaaatatgagatggtgagataaaatgaccatgtgacagtgtacttatagcattgactggccaccatggtaagccatgtcttttcaataggtcatgtcttttagataagatgcctttttttcattaattattattg
ttatcattattttttattgttattgtttattttttattgttattgttatttatttaatatttatgtttgttacaatctccatgtcaacaaactaagaaatgcaacaactcaaaggtccgatccttctagtatgcagATATCAAAGTGGATGTTGAGCAAGGGCCAAGGTAAAACCATGGGAACCCACTACATGTTATTGA
ATGCTCTTGCCAATGAGCGAAGAATAGAAGAAGCAGAGGAACTGTGGATGGAAATATTTAATAGGCATATGGAATATGTTCCACGCATGTTCTTTACTCGTATCATCACTATGTATGAGCGAAATAACATGACTGAAAAGTTGCTCGAGGTGTTTGCAGATATGGAAGAGCTGGGTGTGACGCCAGAACGTTTGGCTGTT
GTTAAGATTGCAAATACATTCAAGAATATGGGGATGATGGACAAGTATGAAAAAGTATTTAAGAAGTATCCTGAAACAGAATGGGAGTACCGCTATCGTAAGGGGAATCGTTACAGAGTACTAGTGCCTAAATCACAAGATTCTGGGGGGAATTTGATACATCAAGATGACATCACCCCAAATGTTGCAAAGGATGATGA
GTCTACTATACATGATTTCCATACAGCTGAGGTTGCAAATCAGCAATATGAAGTCTCTCAGTTACTCGAGGAGAAGGAGAATTTCATACATCAAGATGACAGCACCCTGAATGTTGCAAAGTATGATGAGTCTGCTATACATGATTTTCATACAGTCGAGGTTACCAAAAAGCAACATGAAGTCTCTGAGTTACTGGAGG
ACAGGGAGAATTTGATACATCAAGATGACAACACCCCAAATGTTGCAGAGGACGGTGTTTCTACTATACATGATTTCCATGCAGCCGGGGTTAGAAAATAGCAATATGAAGTCTCTCAGTTACTTGAGGAAAAGGATCCTACGAGGATATCTATCTCAATTTGACAAGTTCTGAAGGTAGCTGCATACCGATGAACACTT
AAGATATCCTGCTGAAATAAAATCAGCACTTGTACATCATAATACTGAGTCACTGCAGTCTCTTAACCTCCACTTTCTAAAATGTTGTGTATTGCACTGCACTTGTGATCTATGTTCTTCATCAAGCATTATAAATGTAAAATATGCTTGGACAATAATATCCATTGTATGTGCATGTCCATTTGTCCTGCCATGTGAAA
AGTTGAATGGAGAAATCCCATTTTGGTTCTTTGATACAAAATATAGAAATTGTTGTGCATTCTAAACAACGAGTTAAAGTCTTTGATAGTTGCAAGCCAGATGGTCATGATGTAGAGAGAATTTGGTCGAGACATAGTGCTCAGAAAAACTTACTTTTCTTAGTGGTCTTAAAACAAGGCGTGTTCCTGTCTTTCTACTA
CTTTTGGTTATATATCTGCTCGCCATTCTTGC