NA ----> NA
Intron 1 GTATGTCTCT ... TCATGAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.15 | 14 | 1 | 4 |
| A2 | 4.35 | 11 | 1 | 0 |
| A3 | 25 | 6 | 3 | 1 |
| A4 | 33.33 | 6 | 5 | 1 |
| A5 | 22.22 | 7 | 0 | 4 |
| A6 | 15 | 17 | 4 | 2 |
| A7 | 28.42 | 34 | 16 | 11 |
| A8 | 29.41 | 6 | 1 | 4 |
| A9 | 20.88 | 36 | 8 | 11 |
| A10 | 21.84 | 34 | 10 | 9 |
>TRINITY_DN46705_c0_g3_i2 from sample A7 / Example spliced isoformGAAATCCTGTGGGGTCATTCTCTCGAAATAAGGCCAAAATACCCACAATAATCGCTGGTCGAGCCAAAAAAACAACCGTTGGAATTGCACTTTTCAAAGCTTCTGTTCCATAATCCATTCGATACCCATCGCTTTTATAAAACACATTCCCTGAGAACAGATGGAAATTAATATAGATCCGCGGTTTGGATTTTCAATTT
GAGTAGCAGTGCAGTCTGAACTAAAGGAGGCGCAATGTTCATCTGCACGGGAGGCGCCATGTTCGGGAAAAGTTTCAAATCTTCAAAATGTAAGACCTCGTTGAGACTCGCAATGTCACGCATAAAGCTGCTCAGGAACAAGAGAGATATACAGCTGCAGACGATGAAGAGAGATCTGGCTCTTCTTCTCCAGTCTGGTC
AGGACCCAAGTGCAAGGATTCGGGTTGAACATATACTAAGAGAGCAAAATATCATGGCAGCATATGATATCATTGAACTCTTTTGCGAATTAATCGTGTCACGACTGCAAATCATTGAATCCCAAAGGCAGTGTCCTGTCGATTTGCGAGAAGCTCTTTCAAGTTTAATATTTGCAGCTTCAAGATGTGCCGACATTCCA
GAACTTCTGGATATTCGCAAGCTGTTTGGAGCAAAGTATGGTAAAGAATTTGTAGCTGCAGCATCAGAACTACGCCCTGATTGTGGTGTCAACAGAACGATCATCGAGAAGTTATCTGTCAGAACACCTAGTGGGGAAGTGAAGCTGAAGCTTATGAAAGAAATAGCAAAGGAACTCAACGTTGACTGGGATCCAGCAGA
ATCAGAATCAGAACTGTTGAAACTTCCTGAAGACCTTCTTGAAGGACCAAGTAAGTTTGCTAGTGCCACCCATATATCAGCAGGATCTGACAAGGATAGCTCACATTCTGTTTCCGGGCTCAAGCGTGAACCTCACATCCCCAATACAATGCCTTCCCAGGCTCCCCAAGTCTCTTCACAGTATGCAACTGAAGCTACAT
CATCTGTTGGAAACATTTACCAGCAAAGTAAAATGAATTCAAGTGTGGGCAGAACAAGTGTGCAACCTATAGATTCGTATCAAGAATCTGTTGACAACAGACATATGCATCCTCTTTCTTCAGCTAAACATAATCTTCATAGGATTGGCACAGAAAATTTCTCTGAAGGGCCTAACTCTTCTGAGTTGGATGGTATAAAG
GGAAACCTATCAGGTAAAACTGCAGTATCATCTGGTAGGTTCAATGAGAATGTTTCTTTGGAAAGCAGTAGAGGGAGCAATATGTATTTCAAAGATATAGAGTCAGCTGCTCAAGCAGCTGCTGCTTCTGCAAAGAGAGCAATTACAGCTGCCCAGGCTGCTGCTCACCTGGCAAAGCAGGATAAACTTGCACAGCAAGC
AAATGGTTCATCTGATGATTCAAGCTTAAGTGATGAAGAGGAAATCAATTTGAGCTATTCAGGCATGAATAGGAAACCAAGTTTACACCAACACCAAGCCCAATCTTTTCGCGACTATGACCTCCCAGAGAAAAGGACCCAGGTTGAAAGTCACGCGAGGAACACAAACATTTACAGGAGTGCAAGTGAACAAATCCGCA
GGCAGAATAGAGCACCAGACCTTGACAATGGTTATGAATATGAAATTCAAGTTAGTAGGACTTATGGACAGGATACTTTACAGCAGAATGGAAATAAAGCCAACTATGGGAGTAACAGCAAAGCTGTCATGCAGAATTATGGCAGTATGGGAAGGTCAGAGAAACAGTGTTTTGGTGGTTATAGGGGTGATTCAACCAGG
CAGGACTCTGATGAGGAACACTCATCACCATCTAGGATGACAGAAGTGGTGTACTCAAACAAACTTTCTCAGGTCTTTGATGAATCAGATGGCACAAACTCTGAAAGTGATATGGAGATTGGTACACAACATTTTGTATCCAAGATTAAGAACCAGTCTCAGTCTCAATCTTGTCCACCAATCCAACCACCAGCGAGGTC
ACCTCCAGGCTTTCCATTCTCGAAGGATAGCACCTCTCAGTCCCTTCCTTCATCAGAAGAATCAAAGACATCAAGATTGAACTCCTCAAAAAGTAACAGCTCACATGTCCATCCCAAGCTCCCAGATTATGATGACTTGGCTGTTCGCTTCGAGTCCTTGAAGTACAACAGACGGTGAATCAGGTAACGTGCCAGGAATT
ATCCAAGAGACTATCAAGAAGCTCAGGAGGGAGCTGAGAGCATTATTATTTTTCCTAAGAAGTTATATGTTACTGAATCATATCAGCAGATTCTACTAGCAGTCGACCTGTATTACTGATCAACAGCATTTTGTAAAAATGTGTCATTGTCATTAAGTTTTGTTAGTCCGTTTGCCTTACTGGGTTGGTACTTGGTCCTG
GTCAGCCTTTCTCAGAGTTGGTCCTATATCAGCCTCCCTGGGTTGTTCCTGACTGAAAGATCTTGAGGTCAAGCAGGTAACGCAGGTTGTTTTAGATAAAGACATCTTTTGGTATTATCTTTTCATTATTTATTTTGTTGTTTTAGATCCCGAGATTGAGATAAGATGCTGCCTACCTAACTCAAAGAAGTTGGGATTCC
TTCATGTATTTTGATTTTTTACTTGCATAATTCTATTCATGAATCTATTTACTATATTGCTTTGCATTCTCGTCAAGGGGTTCAGTCTGACTATATTGATAATAAAATATGATGC
>TRINITY_DN46705_c0_g3_i4 from sample A7 / Example unspliced isoform:GAAATCCTGTGGGGTCATTCTCTCGAAATAAGGCCAAAATACCCACAATAATCGCTGGTCGAGCCAAAAAAACAACCGTTGGAATTGCACTTTTCAAAGCTTCTGTTCCATAATCCATTCGATACCCATCGCTTTTATAAAACACATTCCCTGAGAACAGATGGAAATTAATATAGATCCGCGGTTTGGATTTTCAATTT
GAGTAGCAGTGCAGTCTGAACTAAAGGAGGCGCAATGTTCATCTGCACGGGAGGCGCCATGTTCGGGAAAAGTTTCAAATCTTCAAAATGTAAGACCTCGTTGAGACTCGCAATGTCACGCATAAAGCTGCTCAGGAACAAGAGAGATATACAGCTGCAGACGATGAAGAGAGATCTGGCTCTTCTTCTCCAGTCTGGTC
AGGACCCAAGTGCAAGGATTCGGGTTGAACATATACTAAGAGAGCAAAATATCATGGCAGCATATGATATCATTGAACTCTTTTGCGAATTAATCGTGTCACGACTGCAAATCATTGAATCCCAAAGgtatgtctctgaaagtgttcaacaagaacacaaaaactgaactttgctatctcacaattcttattactgtgtg
taaaacagagagatctacctcagagttaattttcttcttcggtgtacaagcatagcttgtttctttttgatagaaaccatgaagtccaatccaaactataataaggtcagtttatgtgtatacacccttgaaaaaactggaacaataaggtcattcgtttaaggtatgcactatgattgattggaggacttttatctagt
ttgggtaagcacagactttgctgatcatttttttgagaaactatgtaagcactgtcatcatgtgacaattgatatttgctgtgagaaaggcaaagagaaaagaaatagcacagattcatcctaaccccagatcttttgagtaccaagtggttttgcacttgtgtacttttattcctcttggtgcttaatagatcaagggt
taagctggatctatgctaatacttttcttgagattctgaatcttcagaacttagtaaatcatcaagagttgcattcaaattctagaattctatactcaaatccacttttgttgaattagtttatgtcacaatcagcagtaagttttgttgagcatttgcgaatgtgctttttccttccttcaaatccattttgcaatata
ttttcttccacacaatatttcgatcttactatcaaatctagattctaaatgtttgttgggcttcatctttttttgtattgtctcatattcatgaatagGCAGTGTCCTGTCGATTTGCGAGAAGCTCTTTCAAGTTTAATATTTGCAGCTTCAAGATGTGCCGACATTCCAGAACTTCTGGATATTCGCAAGCTGTTTGG
AGCAAAGTATGGTAAAGAATTTGTAGCTGCAGCATCAGAACTACGCCCTGATTGTGGTGTCAACAGAACGATCATCGAGAAGTTATCTGTCAGAACACCTAGTGGGGAAGTGAAGCTGAAGCTTATGAAAGAAATAGCAAAGGAACTCAACGTTGACTGGGATCCAGCAGAATCAGAATCAGAACTGTTGAAACTTCCTG
AAGACCTTCTTG
Intron 2 GCAGTGTCCT ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.26 | 5 | 14 | 22 |
| A2 | 74.59 | 4 | 10.5 | 13 |
| A3 | 63.64 | 4 | 6 | 8 |
| A4 | 43.56 | 10 | 4.5 | 11 |
| A5 | 81.82 | 2 | 7 | 11 |
| A6 | 65.71 | 9 | 16.5 | 18 |
| A7 | 70.05 | 14 | 33.5 | 32 |
| A8 | 51.72 | 7 | 6 | 9 |
| A9 | 67.15 | 17 | 34.5 | 35 |
| A10 | 71.25 | 12 | 33.5 | 26 |
>TRINITY_DN44792_c0_g1_i2 from sample A9 / Example spliced isoformGTTAAAAATCTATCTTCCTGCCTCCACCTTATTAACCAGCTTGGGATACCTTAGAAACCCACGCAGTTTGAAATCCTGTGGGGTCATTCTCTCGAAATAAGGCCAAAATACCCACAATAATCGCTGGTCGAGCCAAAAAAACAACCGTTGGAATTGCACTTTTCAAAGCTTCTGTTCCATAATCCATTCGATACCCATCG
CTTTTATAAAACACATTCCCTGAGAACAGATGGAAATTAATATAGATCCGCGGTTTGGATTTTCAATTTGAGTAGCAGTGCAGTCTGAACTAAAGGAGGCGCAATGTTCATCTGCACGGGAGGCGCCATGTTCGGGAAAAGTTTCAAATCTTCAAAATGTAAGACCTCGTTGAGACTCGCAATGTCACGCATAAAGCTGC
TCAGGAACAAGAGAGATATACAGCTGCAGACGATGAAGAGAGATCTGGCTCTTCTTCTCCAGTCTGGTCAGGACCCAAGTGCAAGGATTCGGGTTGAACATATACTAAGAGAGCAAAATATCATGGCAGCATATGATATCATTGAACTCTTTTGCGAATTAATCGTGTCACGACTGCAAATCATTGAATCCCAAAGCTTC
AAGATGTGCCGACATTCCAGAACTTCTGGATATTCGCAAGCTGTTTGGAGCAAAGTATGGTAAAGAATTTGTAGCTGCAGCATCAGAACTACGCCCTGATTGTGGTGTCAACAGAACGATCATCGAGAAGTTATCTGTCAGAACACCTAGTGGGGAAGTGAAGCTGAAGCTTATGAAAGAAATAGCAAAGGAACTCAACG
TTGACTGGGATCCAGCAGAATCAGAATCAGAACTGTTGAAACTTCCTGAAGACCTTCTTGAAGGACCAAGTAAGTTTGCTAGTGCCACCCATATATCAGCAGGATCTGACAAGGATAGCTCACATTCTGTTTCCGGGCTCAAGCGTGAACCTCACATCCCCAATACAATGCCTTCCCAGGCTCCCCAAGTCTCTTCACAG
TATGCAACTGAAGCTACATCATCTGTTGGAAACATTTACCAGCAAAGTAAAATGAATTCAAGTGTGGGCAGAACAAGTGTGCAACCTATAGATTCGTATCAAGAATCTGTTGACAACAGACATATGCATCCTCTTTCTTCAGCTAAACATAATCTTCATAGGATTGGCACAGAAAATTTCTCTGAAGGGCCTAACTCTTC
TGAGTTGGATGGTATAAAGGGAAACCTATCAGGTAAAACTGCAGTATCATCTGGTAGGTTCAATGAGAATGTTTCTTTGGAAAGCAGTAGAGGGAGCAATATGTATTTCAAAGATATAGAGTCAGCTGCTCAAGCAGCTGCTGCTTCTGCAAAGAGAGCAATTACAGCTGCCCAGGCTGCTGCTCACCTGGCAAAGCAGG
ATAAACTTGCACAGCAAGCAAATGGTTCATCTGATGATTCAAGCTTAAGTGATGAAGAGGAAATCAATTTGAGCTATTCAGGCATGAATAGGAAACCAAGTTTACACCAACACCAAGCCCAATCTTTTCGCGACTATGACCTCCCAGAGAAAAGGACCCAGGTTGAAAGTCACGCGAGGAACACAAACATTTACAGGAGT
GCAAGTGAACAAATCCGCAGGCAGAATAGAGCACCAGACCTTGACAATGGTTATGAATATGAAATTCAAGTTAGTAGGACTTATGGACAGGATACTTTACAGCAGAATGGAAATAAAGCCAACTATGGGAGTAACAGCAAAGCTGTCATGCAGAATTATGGCAGTATGGGAAGGTCAGAGAAACAGTGTTTTGGTGGTTA
TAGGGGTGATTCAACCAGGCAGGACTCTGATGAGGAACACTCATCACCATCTAGGATGACAGAAGTGGTGTACTCAAACAAACTTTCTCAGGTCTTTGATGAATCAGATGGCACAAACTCTGAAAGTGATATGGAGATTGGTACACAACATTTTGTATCCAAGATTAAGAACCAGTCTCAGTCTCAATCTTGTCCACCAA
TCCAACCACCAGCGAGGTCACCTCCAGGCTTTCCATTCTCGAAGGATAGCACCTCTCAGTCCCTTCCTTCATCAGAAGAATCAAAGACATCAAGATTGAACTCCTCAAAAAGTAACAGCTCACATGTCCATCCCAAGCTCCCAGATTATGATGACTTGGCTGTTCGCTTCGAGTCCTTGAAGTACAACAGACGGTGAATC
AGGTAACGTGCCAGGAATTATCCAAGAGACTATCAAGAAGCTCAGGAGGGAGCTGAGAGCATTATTATTTTTCCTAAGAAGTTATATGTTACTGAATCATATCAGCAGATTCTACTAGCAGTCGACCTGTATTACTGATCAACAGCATTTTGTAAAAATGTGTCATTGTCATTAAGTTTTGTTAGTCCGTTTGCCTTACT
GGGTTGGTACTTGGTCCTGGTCAGCCTTTCTCAGAGTTGGTCCTATATCAGCCTCCCTGGGTTGTTCCTGACTGAAAGATCTTGAGGTCAAGCAGGTAACGCAGGTTGTTTTAGATAAAGACATCTTTTGGTATTATCTTTTCATTATTTATTTTGTTGTTTTAGATCCCGAGATTGAGATAAGATGCTGCCTACCTAAC
TCAAAGAAGTTGGGATTCCTTCATGTATTTTGATTTTTTACTTGCATAATTCTATTCATGAATCTATTTACTATATTGCTTTGCATTCTAA
>TRINITY_DN44792_c0_g1_i3 from sample A9 / Example unspliced isoform:GTTAAAAATCTATCTTCCTGCCTCCACCTTATTAACCAGCTTGGGATACCTTAGAAACCCACGCAGTTTGAAATCCTGTGGGGTCATTCTCTCGAAATAAGGCCAAAATACCCACAATAATCGCTGGTCGAGCCAAAAAAACAACCGTTGGAATTGCACTTTTCAAAGCTTCTGTTCCATAATCCATTCGATACCCATCG
CTTTTATAAAACACATTCCCTGAGAACAGATGGAAATTAATATAGATCCGCGGTTTGGATTTTCAATTTGAGTAGCAGTGCAGTCTGAACTAAAGGAGGCGCAATGTTCATCTGCACGGGAGGCGCCATGTTCGGGAAAAGTTTCAAATCTTCAAAATGTAAGACCTCGTTGAGACTCGCAATGTCACGCATAAAGCTGC
TCAGGAACAAGAGAGATATACAGCTGCAGACGATGAAGAGAGATCTGGCTCTTCTTCTCCAGTCTGGTCAGGACCCAAGTGCAAGGATTCGGGTTGAACATATACTAAGAGAGCAAAATATCATGGCAGCATATGATATCATTGAACTCTTTTGCGAATTAATCGTGTCACGACTGCAAATCATTGAATCCCAAAGgcag
tgtcctgtcgatttgcgagaagctctttcaagtttaatatttgcagCTTCAAGATGTGCCGACATTCCAGAACTTCTGGATATTCGCAAGCTGTTTGGAGCAAAGTATGGTAAAGAATTTGTAGCTGCAGCATCAGAACTACGCCCTGATTGTGGTGTCAACAGAACGATCATCGAGAAGTTATCTGTCAGAACACCTAG
TGGGGAAGTGAAGCTGAAGCTTATGAAAGAAATAGCAAAGGAACTCAACGTTGACTGGGATCCAGCAGAATCAGAATCAGAACTGTTGAAACTTCCTGAAGACCTTCTTGAAGGACCAAGTAAGTTTGCTAGTGCCACCCATATATCAGCAGGATCTGACAAGGATAGCTCACATTCTGTTTCCGGGCTCAAGCGTGAAC
CTCACATCCCCAATACAATGCCTTCCCAGGCTCCCCAAGTCTCTTCACAGTATGCAACTGAAGCTACATCATCTGTTGGAAACATTTACCAGCAAAGTAAAATGAATTCAAGTGTGGGCAGAACAAGTGTGCAACCTATAGATTCGTATCAAGAATCTGTTGACAACAGACATATGCATCCTCTTTCTTCAGCTAAACAT
AATCTTCATAGGATTGGCACAGAAAATTTCTCTGAAGGGCCTAACTCTTCTGAGTTGGATGGTATAAAGGGAAACCTATCAGGTAAAACTGCAGTATCATCTGGTAGGTTCAATGAGAATGTTTCTTTGGAAAGCAGTAGAGGGAGCAATATGTATTTCAAAGATATAGAGTCAGCTGCTCAAGCAGCTGCTGCTTCTGC
AAAGAGAGCAATTACAGCTGCCCAGGCTGCTGCTCACCTGGCAAAGCAGGATAAACTTGCACAGCAAGCAAATGGTTCATCTGATGATTCAAGCTTAAGTGATGAAGAGGAAATCAATTTGAGCTATTCAGGCATGAATAGGAAACCAAGTTTACACCAACACCAAGCCCAATCTTTTCGCGACTATGACCTCCCAGAGA
AAAGGACCCAGGTTGAAAGTCACGCGAGGAACACAAACATTTACAGGAGTGCAAGTGAACAAATCCGCAGGCAGAATAGAGCACCAGACCTTGACAATGGTTATGAATATGAAATTCAAGTTAGTAGGACTTATGGACAGGATACTTTACAGCAGAATGGAAATAAAGCCAACTATGGGAGTAACAGCAAAGCTGTCATG
CAGAATTATGGCAGTATGGGAAGGTCAGAGAAACAGTGTTTTGGTGGTTATAGGGGTGATTCAACCAGGCAGGACTCTGATGAGGAACACTCATCACCATCTAGGATGACAGAAGTGGTGTACTCAAACAAACTTTCTCAGGTCTTTGATGAATCAGATGGCACAAACTCTGAAAGTGATATGGAGATTGGTACACAACA
TTTTGTATCCAAGATTAAGAACCAGTCTCAGTCTCAATCTTGTCCACCAATCCAACCACCAGCGAGGTCACCTCCAGGCTTTCCATTCTCGAAGGATAGCACCTCTCAGTCCCTTCCTTCATCAGAAGAATCAAAGACATCAAGATTGAACTCCTCAAAAAGTAACAGCTCACATGTCCATCCCAAGCTCCCAGATTATG
ATGACTTGGCTGTTCGCTTCGAGTCCTTGAAGTACAACAGACGGTGAATCAGGTAACGTGCCAGGAATTATCCAAGAGACTATCAAGAAGCTCAGGAGGGAGCTGAGAGCATTATTATTTTTCCTAAGAAGTTATATGTTACTGAATCATATCAGCAGATTCTACTAGCAGTCGACCTGTATTACTGATCAACAGCATTT
TGTAAAAATGTGTCATTGTCATTAAGTTTTGTTAGTCCGTTTGCCTTACTGGGTTGGTACTTGGTCCTGGTCAGCCTTTCTCAGAGTTGGTCCTATATCAGCCTCCCTGGGTTGTTCCTGACTGAAAGATCTTGAGGTCAAGCAGGTAACGCAGGTTGTTTTAGATAAAGACATCTTTTGGTATTATCTTTTCATTATTT
ATTTTGTTGTTTTAGATCCCGAGATTGAGATAAGATGCTGCCTACCTAACTCAAAGAAGTTGGGATTCCTTCATGTATTTTGATTTTTTACTTGCATAATTCTATTCATGAATCTATTTACTATATTGCTTTGCATTCTAA