NA ----> NA
Intron 1 GTTATAGTAG ... ATCACATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.19 | 4 | 12 | 11 |
| A2 | 53.85 | 9 | 7 | 14 |
| A3 | 47.62 | 11 | 10 | 10 |
| A4 | 92.59 | 1 | 13 | 12 |
| A5 | 73.33 | 2 | 7 | 4 |
| A6 | 64.71 | 3 | 5 | 6 |
| A7 | 65.96 | 8 | 10 | 21 |
| A8 | 46.67 | 16 | 11 | 17 |
| A9 | 68 | 4 | 10 | 7 |
| A10 | 48.15 | 7 | 4 | 9 |
>TRINITY_DN112749_c0_g1_i2 from sample A3 / Example spliced isoformAGCGTGCCCACACTGACGATCTTCTAGATAACCACAAGTATTTACGTGACCCTGGCGTTAAACACGAACTAGTGTAGAGCGTGCCCACATTGACCGTCATGAAAGGAGATTTATACTGAAGTCGACACAACTGGCGGTGGCTTAGAAAAAAGGCTGCAGTAAGTCGGTTTTTGGAGGTTATGAGACAGTCCTTGAGCCAT
ACTTCTGCATTCACAGGCCCTATAGGTCAGCTAGTCCATCATAAAATACAATCAGCAGGGTATTTACCTGCAATCTTAGAGTTGAGCTCTACGAAGGAATATGAAAGTCCTCAATTAAAATCATCTGTTAGTGGCTCAGGATTTCAAATTCTTCACTCAGAAGGGCCAGAATTGGGAAAACAGTTGACAGATATGGGTCT
AAATGGCCGGCTCCCACATATGCCTCCTTGGTTTACCCATGCTGGTGGTCACAAACTCTATGAATTGCTTGCGTCCATATTAAGGCTTGCTGGTCTATCTGCTGTTGCTGGTTGCACAGAGACATTATCTTTGTCTATTCTGATAGAGATACCATTGGAATCTCTTCGTCATGCCATTTCTGAGTTGCGCTTAAGAGATT
ACAGAGATGAAGATTGGTGTACATGGTATTCCAGACATGAGTCAGGTCGGCTTCTGCGTGCTGCAGGTACTGCAGTTTGTATGCTAAATGAAATCATTTATGGTGCATCAAACAGACTGACATACACATATTTAGGCTTGTTCAAGAGCATCAACAGACCTCGAGAAAGGTGCATGGAAAAAAGGGTAGTAACTTCAGAC
AGCTCATCAAAACATATTCCGTGTTCTTTAAAAAAATGGGAAATGGACCAAGGAACAGACATAAATCAGCATGTTGTTGAGTGCGTGGGTATCATATTACATGAATACCTCTCTTCTGAAATTTGGGATCTTCCAATAGATTTTTCCTCTCCTGGCTTAAGACAGGGTTTCACCAATCAGCAATTGCCTTGGCATTTTTT
CCATGACACTTCAATGCTACAACAGCAGTGCAGCAGATATTGCTCTGAGAATGTTATCCGAATCTGCTGGTTATCCATCGGTAAAAGATTTGGTGGTGGCAAATGCAGATTATATAATCGATTCATTGTGTCGTCAACTACGTCATGTGACCCTCTATCCTCATGCACCTAACATACTTGCTGCTGTACTCTCCTCCATT
GGGGCAGCTCATGATATCTTGCCATTACTAGTGGAGCCGATGCGTTCCATTTCATTAGAACTTGAGGTACTTGCACGACATCAACATCCAGATTTGACAGTTCCTATATTGAAGGCTTTGAATGAAATTGTGAAGGCATCAAGGCAGGAAACACATTCATTAACTCAAGAATCTTTGGAGTATAGCTCACATATCAAATC
TGAAATTCAACAACTGAAAGAGAGTAACCAAAGTCTTCTGTCAAGATCCTCTGTAGTGTCTTCAGGCGTATCTTCTGGTTCTTGTTACAGAGACACTGATATCTCTCTGACTACAGATTTTAATGAGGACATCAAAGGGGGATTGAGTGAAGGTGATGCATCTTTGGATCATTGGGAACAGGCTTTCCTGGTATTGGATG
ATAGGAAAAGATATCGGCAGTCAGTGGGAAATGTTGTAGGGTCATGCTTGACTGCGTCTATTCCACTTCTAGGTTCAAATGAACAAGAGGCATGTCTGATGTCACTAGATCTAGTTGAGAATGGGATGGCTACACTTGCTATGATAGAGGAAGCACTCAGAAATGAAACAGAATCTAGAGAAGCAATTGAGTGGGTGGCA
AAACAATTTTCATTTCACACTCTTCAGGACAGCATAAATTCTTTAGATGCAGTAAATGATGGAAACAGGCTTTTACCTGCAATGAACAAAATATGGCCTTATCTGATTGTTTGCCTCAAACACACAAAACCTCAGGTAGCAGTTAGATGTATGGGTGTGATAGGCCATGTGGTTCGTGTTTGTGGAGGGGATTTTTTTAT
CCGCCGCTTTAAAACCGATGGATCCCATTTCTTCAGGCTGTTATCCCTGGGTGTTTGCTCAATAAAGACTGAGTTCCAGGCAGAGAAATCTATGCTGCTTCCTTTTAGAAGGCATAGCAAATCTATTGATCAAGCAGATATGGCAGAAGGATCTCTGTTCAAAGTACAAGAAGCCTTTTTTAAAATGATTGCAACCATTG
CTAGGGACAAGAAGAGTGCTCGTGCTCTAGAGGCAGTGTTGAAACAGATGGCAGGTTTGTGCGTGGGTTTTGCTTGTGGCAGTCAAATGTTGCAGGAAGCTGCTACAAATGCATTGCTTGGCTTGTCATGCATTGACCCAGACCTTTTTTGGTTACTTTTGGCTGACATAGCTTACTCAGTGGATGGTAAAGAAGTTCCA
AGTCCACCAGGTCCAGACTTCCCAAAGATTTCTCAACTTCTTCCTCAGTCCCCAAAGAAATATCTTTGGGTTCAATATGCAGGCCAAGATTTTGGTTTGAAGTCTGATGTTTCAGTGGCAATCTTGTTGCTTGTAAAGATAGATTCTTGCCATCATGCTGATGCCTAGTGATATATTTCAACCTTCCATACAAAAATATT
CTTAAAAGCAATGAAATGCTCGTTCACCTGTAACTAGTACTTACAGGTTGAAATGTACCATGCTTTTGTTCATAGACTAGTTGACTGGTGGCAGTCTCTCGAGATAGCTTATATACATGATACGTTGCATGATGCAGATTGTAGGCTTAAGTTTTGTAGATGTCGATCAATTAAATTTCATGTCTATGCAATTGACTGAC
CTGGC
>TRINITY_DN112749_c0_g1_i1 from sample A3 / Example unspliced isoform:AGCGTGCCCACACTGACGATCTTCTAGATAACCACAAGTATTTACGTGACCCTGGCGTTAAACACGAACTAGTGTAGAGCGTGCCCACATTGACCGTCATGAAAGGAGATTTATACTGAAGTCGACACAACTGGCGGTGGCTTAGAAAAAAGGCTGCAGTAAGTCGGTTTTTGGAGGTTATGAGACAGTCCTTGAGCCAT
ACTTCTGCATTCACAGGCCCTATAGGTCAGCTAGTCCATCATAAAATACAATCAGCAGGGTATTTACCTGCAATCTTAGAGTTGAGCTCTACGAAGGAATATGAAAGTCCTCAATTAAAATCATCTGTTAGTGGCTCAGGATTTCAAATTCTTCACTCAGAAGGGCCAGAATTGGGAAAACAGTTGACAGATATGGGTCT
AAATGGCCGGCTCCCACATATGCCTCCTTGGTTTACCCATGCTGGTGGTCACAAACTCTATGAATTGCTTGCGTCCATATTAAGGCTTGCTGGTCTATCTGCTGTTGCTGGTTGCACAGAGACATTATCTTTGTCTATTCTGATAGAGATACCATTGGAATCTCTTCGTCATGCCATTTCTGAGTTGCGCTTAAGAGATT
ACAGAGATGAAGATTGGTGTACATGGTATTCCAGACATGAGTCAGGTCGGCTTCTGCGTGCTGCAGGTACTGCAGTTTGTATGCTAAATGAAATCATTTATGGTGCATCAAACAGACTGACATACACATATTTAGGCTTGTTCAAGAGCATCAACAGACCTCGAGAAAGGTGCATGGAAAAAAGGGTAGTAACTTCAGAC
AGCTCATCAAAACATATTCCGTGTTCTTTAAAAAAATGGGAAATGGACCAAGGAACAGACATAAATCAGCATGTTGTTGAGTGCGTGGGTATCATATTACATGAATACCTCTCTTCTGAAATTTGGGATCTTCCAATAGATTTTTCCTCTCCTGGCTTAAGACAGGGTTTCACCAATCAGCAATTGCCTTGGCATTTTTT
CCATGACACTTCAATGCTACAACAGgttatagtagaaggatttggtgtatttggaatatcacttggcacgtcttttgaaaccagtgggttcttatattcttccctttacttattgttggagaagcttacctgttcaaattatcacatcagCAGTGCAGCAGATATTGCTCTGAGAATGTTATCCGAATCTGCTGGTTATC
CATCGGTAAAAGATTTGGTGGTGGCAAATGCAGATTATATAATCGATTCATTGTGTCGTCAACTACGTCATGTGACCCTCTATCCTCATGCACCTAACATACTTGCTGCTGTACTCTCCTCCATTGGGGCAGCTCATGATATCTTGCCATTACTAGTGGAGCCGATGCGTTCCATTTCATTAGAACTTGAGGTACTTGCA
CGACATCAACATCCAGATTTGACAGTTCCTATATTGAAGGCTTTGAATGAAATTGTGAAGGCATCAAGGCAGGAAACACATTCATTAACTCAAGAATCTTTGGAGTATAGCTCACATATCAAATCTGAAATTCAACAACTGAAAGAGAGTAACCAAAGTCTTCTGTCAAGATCCTCTGTAGTGTCTTCAGGCGTATCTTC
TGGTTCTTGTTACAGAGACACTGATATCTCTCTGACTACAGATTTTAATGAGGACATCAAAGGGGGATTGAGTGAAGGTGATGCATCTTTGGATCATTGGGAACAGGCTTTCCTGGTATTGGATGATAGGAAAAGATATCGGCAGTCAGTGGGAAATGTTGTAGGGTCATGCTTGACTGCGTCTATTCCACTTCTAGGTT
CAAATGAACAAGAGGCATGTCTGATGTCACTAGATCTAGTTGAGAATGGGATGGCTACACTTGCTATGATAGAGGAAGCACTCAGAAATGAAACAGAATCTAGAGAAGCAATTGAGTGGGTGGCAAAACAATTTTCATTTCACACTCTTCAGGACAGCATAAATTCTTTAGATGCAGTAAATGATGGAAACAGGCTTTTA
CCTGCAATGAACAAAATATGGCCTTATCTGATTGTTTGCCTCAAACACACAAAACCTCAGGTAGCAGTTAGATGTATGGGTGTGATAGGCCATGTGGTTCGTGTTTGTGGAGGGGATTTTTTTATCCGCCGCTTTAAAACCGATGGATCCCATTTCTTCAGGCTGTTATCCCTGGGTGTTTGCTCAATAAAGACTGAGTT
CCAGGCAGAGAAATCTATGCTGCTTCCTTTTAGAAGGCATAGCAAATCTATTGATCAAGCAGATATGGCAGAAGGATCTCTGTTCAAAGTACAAGAAGCCTTTTTTAAAATGATTGCAACCATTGCTAGGGACAAGAAGAGTGCTCGTGCTCTAGAGGCAGTGTTGAAACAGATGGCAGGTTTGTGCGTGGGTTTTGCTT
GTGGCAGTCAAATGTTGCAGGAAGCTGCTACAAATGCATTGCTTGGCTTGTCATGCATTGACCCAGACCTTTTTTGGTTACTTTTGGCTGACATAGCTTACTCAGTGGATGGTAAAGAAGTTCCAAGTCCACCAGGTCCAGACTTCCCAAAGATTTCTCAACTTCTTCCTCAGTCCCCAAAGAAATATCTTTGGGTTCAA
TATGCAGGCCAAGATTTTGGTTTGAAGTCTGATGTTTCAGTGGCAATCTTGTTGCTTGTAAAGATAGATTCTTGCCATCATGCTGATGCCTAGTGATATATTTCAACCTTCCATACAAAAATATTCTTAAAAGCAATGAAATGCTCGTTCACCTGTAACTAGTACTTACAGGTTGAAATGTACCATGCTTTTGTTCATAG
ACTAGTTGACTGGTGGCAGTCTCTCGAGATAGCTTATATACATGATACGTTGCATGATGCAGATTGTAGGCTTAAGTTTTGTAGATGTCGATCAATTAAATTTCATGTCTATGCAATTGACTGACCTGGC
Intron 2 GTACTGATTC ... TATATCCAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.32 | 7 | 1 | 4 |
| A2 | 71.43 | 2 | 5 | 5 |
| A3 | 37.93 | 9 | 2 | 9 |
| A4 | 45.45 | 6 | 2 | 8 |
| A5 | 33.33 | 1 | 0 | 1 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 100 | 0 | 1 | 1 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 50 | 1 | 0 | 2 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN117060_c0_g1_i5 from sample A2 / Example spliced isoformCAAAAACCTCTATATTGCAAGAAGTAAACTATATTTTAAAAATATCATCTTTTATGTCTACTGCTGTTGTACATGGTGCACTTGAAGATTTTTTTTTCAGGTGATAAGACAAGTAATTTGACTTTAAGATTGCAGAAGCAGAAGCTAGAAGAGGACATCGAGGAAGTGGGAAACTTCGTTGGGACTGCAGATGCATTGGC
TTTCTTTTTGCCAGGGGTTGTTAGTGGTTTGGCAAAGGTCTTGCGCATCTCAAAGTCCATAACAGCTGATTCCTTCCAAGTAACCTCAGGTGCAGCTGGAAGTATTGGGGCAATTGAGCAAGCCATTAAAGGTTTGGCTGAATTTTTAGTCCTATCCTTTGGAGATCAGAAGAATCCCACCCAAATAGATGAGGGTGATC
CAGAGCTTTTTAATGAGGCTATGCCAGGACCTTTTGCAAGAAAGCCTAAGTCAGCAGAGTCAACCTTGGAAGCTCTTCGATATTTATCTGCACGGACCCATGCTCAAAATGTTGTTGAAGTTCAGAAAGATAGAAAAGGAACAAAAGATTCAAATTTCCGTGTTCATCGAGATAAGGAATGGCTAGAGGAGACAGCACAA
CGTGTAGATTGTCTTCTATCTCCAACATTCCCAATTTTATGTGCTCACCCAGCAAAAGTAGTTAGGCTTGGTCTTGCTGAGGCTGCTGGAGCATTGTTGATAAGCTGTAATAACACATTAAGGAGGATCAAAGCAATGCTTTTGGAGTGTTTATTTGCGTTAGCTTGTGATGATTGGGAATCTGTGGCTTCAACTGCTCA
TGACTTTCTTGTCTTATTCTTATCCGATGGGAGATTTATGCAAGAAAATGAACTAAATGAGGTCTTCAACAGGCTTATTGAAAGGTTACCAAAATCAATACTTACAGGAGATGAAGCTGTGGCATTAATACATGCTCGTAGGTTGCTTGCAGCCATGTATTTTTCTGGTCCTCAGGGTGTGAGCTGCCAGCTTTTTCACT
CCCCGGCTGCAGTAAGTCGGTTTTTGGAGGTTATGAGACAGTCCTTGAGCCATACTTCTGCATTCACAGGCCCTATAGATCAGCTAGTCCATCATAAAATACAATCAGCAGGGTATTTACCTGCAATCTTAGAGTTGAGCTCTACGAAGGAATATGAAAGTCCTCAATTAAAATCATCTGTTAGTGGCTCAGGATTTCAA
ATTCTTCACTCAGAAGGGCCAGAATTGGGAAAACAGTTGACAGATATGGGTCTAAATGGCCGGCTCCCACATATGCCTCCTTGGTTTACCCATGCTGGTGGTCACAAACTCTATGAATTGCTTGCGTCCATATTAAGGCTTGCTGGTCTATCTGCTGTTGCTGGTTGCACAGATACATTATCTTTGTCCATTCTGATAGA
GACACCATTGGAATCTCTTCATCATGCCATTTCTGAGTTGCGCTTAAGAGATTACAGAGATGAAGATTGGTGTACATGGTATTCCAGACATGAGTCAGGTCGGCTTCTGCGCGCTGCAGGTACTGCAGTTTGTATGCTAAATGAAATCATTTATGGTGCATCAAACAGACTGACATACACATATTTAGGCTTGTTCAAGA
GCATCAACAGACCACGAGAAAGGCGCATGGAAAAAAGGGTAGTAACTTCAGACAGCTCATCAAAACATATTCCGTGTTCTTTAAAAAAATGGGAAATGGACCAAGGAACAGACATAAATCAGCATGTTGTTGAGTGCGTGGGTATCATATTACATGAATACCTCTCTTCTGAAATTTGGGATCTTCCAATAGATTTTTCC
TCTCCTGGCTTAAGACAGGGTTTCACCAATCAGCAATTGCCTTGGCATTTTTTCCATGACACTTCAATGCTACAACAGGTTATAGTAGAAGGATTTGGTGTATTTGGAATATCACTTGGCACGTCTTTTGAAACCAGTGGGTTCTTATATTCTTCCCTTTACTTATTGTTGGAGAAGCTTACCTGTTCAAATTATCACAT
CAGCAGTGCAGCAGATATTGCTCTGAGAATGTTATCCGAATCTGCTGGTTATCCATCGGTAAAAGATTTGGTGGTGGCAAATGCAGATTATATAATCGATTCATTGTGTCGTCAACTACGTCATGTGACCCTCTATCCTCATGCACCTAACATACTTGCTGCTGTACTCTCCTCCATTGGGGCAGCTCATGATATCTTGC
CATTACTAGTGGAGCCGATGCGTTCCATTTCATTAGAACTTGAGGTACTTGCACGACATCAACATCCAGATTTGACAGTTCCTATATTGAAGGCTTTGAATGAAATTGTGAAGGCATCAAGGCAGGAAACACATTCATTAACTCAAGAATCTTTGGAGTATAGCTCACATATCAAATCTGAAATTCAACAACTGAAAGAG
AGTAACCAAAGTCTTCTGTCAAGATCCTCTGTAGTGTCTTCAGGCGTATCTTCTGGTTCTTGTTACAGAGACACTGATATCTCTCTGACTACAGATTTTAATGAGGACATCAAAGGGGGATTCAGTGAAGGTGATGCATCTTTGGATCATTGGGAACAGGTTTTCCTGGTATTGGATGATAGGAAAAGATATCGGCAGTC
AGTGGGAAATGTTGTAGGGTCATGCTTGACTGCGTCTATTCCACTTCTAGGTTCAAATGAACAAGAGGCATGTCTGATGTCACTAGATCTAGTTGAGAATGGGATGGCTACACTTGCTATGATAGAGGAAGCACTCAGAAATGAAACAGAATCTAGAGAAGCAATTGAGTGGGTGGCAAAACAATTTTCATTTCACACTC
TTCAGGACAGCATAAATTCTTTAGATGCAGTAAATGATGGAAACAGGCTTTTACCTGCAATGAACAAAATATGGCCTTATCTGATTGTTTGCCTCAAACACACAAAACCTCAGGTAGCAGTTAGATGTATGGGTGTGATAGGCCATGTGGTTCGTGTTTGTGGAGGGGATTTTTTTATCCGCCGCTTTAAAACCGATGGA
TCCCATTTTTTCAGGCTGTTATCCCTGGGTGTTTGCTCAATAAAGACCGAGTTCCAGGCAGAGAAATCTATGCTGCTTCCTTTTAGAAGGCATAGCAAATCTATTGATCAAGCAGATATGGCAGAAGGATCTCTGTTCAAAGTACAAGAAGCCTTTTTTAAAATGATCGCAACCATTGCTAGGGACAAGAAAAGTGCTCG
TGCTCTAGAGGCAGTGTTGAAACAGATGGCAGGTTTGTGCGTGGGTTTTGCTTGTGGCAGTCAAATGTTGCAGGAAGCTGCTACAAATGCATTGCTTGGCTTGTCATGCATTGACCCAGACCTTTTTTGGTTACTTTTGGCTGACATAGCTTACTCAGTGGATGGTAAAGAAGTTCCAAGTCCACCAGGTCCAGACTTCC
CAAAGATTTCTCAACTTCTTCCTCAGTCCCCAAAGAAATATCTTTGGGTTCAATATGCAGGCCAAGATTTTGGTTTGAAGTCTGATGTTTCAGTGGCAATCTTGTTGCTTGTAAAGATAGATTCTTGCCATCATGCTGATGCCTAGTGATATATTTCAACCTTCCATACAAAAATATTCTTAAAAGCAATGAAATGCTCG
TTCACCTGTAACTAGTACTTACAGGTTGAAATGTACCATGCTTTTGTTCATAGACTAGTTGACTGGTGGCAGTCTCGCGAGATAGCTTATATACATGATACGTTGCATGATGCAGATTGTAGGCTTAAGTTTTGTAGATGTCGATCAATTAAATTTCATGTCTATGCAATTGACTGACCTGGCCCTGATTGTATTGTCTG
TTTGTCAAAATCCATTCTGATTTATAACAGTTTTGGCAATTTTT
>TRINITY_DN117060_c0_g1_i3 from sample A2 / Example unspliced isoform:CAAAAACCTCTATATTGCAAGAAGTAAACTATATTTTAAAAATATCATCTTTTATGTCTACTGCTGTTGTACATGGTGCACTTGAAGATTTTTTTTTCAGGTGATAAGACAAGTAATTTGACTTTAAGATTGCAGAAGCAGAAGCTAGAAGAGGACATCGAGGAAGTGGGAAACTTCgtactgattctatctcaactctt
agagtacttatatccaagGTTGGGACTGCAGATGCATTGGCTTTCTTTTTGCCAGGGGTTGTTAGTGGTTTGGCAAAGGTCTTGCGCATCTCAAAGTCCATAACAGCTGATTCCTTCCAAGTAACCTCAGGTGCAGCTGGAAGTATTGGGGCAATTGAGCAAGCCATTAAAGGTTTGGCTGAATTTTTAGTCCTATCCTT
TGGAGATCAGAAGAATCCCACCCAAATAGATGAGGGTGATCCAGAGCTTTTTAATGAGGCTATGCCAGGACCTTTTGCAAGAAAGCCTAAGTCAGCAGAGTCAACCTTGGAAGCTCTTCGATATTTATCTGCACGGACCCATGCTCAAAATGTTGTTGAAGTTCAGAAAGATAGAAAAGGAACAAAAGATTCAAATTTCC
GTGTTCATCGAGATAAGGAATGGCTAGAGGAGACAGCACAACGTGTAGATTGTCTTCTATCTCCAACATTCCCAATTTTATGTGCTCACCCAGCAAAAGTAGTTAGGCTTGGTCTTGCTGAGGCTGCTGGAGCATTGTTGATAAGCTGTAATAACACATTAAGGAGGATCAAAGCAATGCTTTTGGAGTGTTTATTTGCG
TTAGCTTGTGATGATTGGGAATCTGTGGCTTCAACTGCTCATGACTTTCTTGTCTTATTCTTATCCGATGGGAGATTTATGCAAGAAAATGAACTAAATGAGGTCTTCAACAGGCTTATTGAAAGGTTACCAAAATCAATACTTACAGGAGATGAAGCTGTGGCATTAATACATGCTCGTAGGTTGCTTGCAGCCATGTA
TTTTTCTGGTCCTCAGGGTGTGAGCTGCCAGCTTTTTCACTCCCCGGCTGCAGTAAGTCGGTTTTTGGAGGTTATGAGACAGTCCTTGAGCCATACTTCTGCATTCACAGGCCCTATAGATCAGCTAGTCCATCATAAAATACAATCAGCAGGGTATTTACCTGCAATCTTAGAGTTGAGCTCTACGAAGGAATATGAAA
GTCCTCAATTAAAATCATCTGTTAGTGGCTCAGGATTTCAAATTCTTCACTCAGAAGGGCCAGAATTGGGAAAACAGTTGACAGATATGGGTCTAAATGGCCGGCTCCCACATATGCCTCCTTGGTTTACCCATGCTGGTGGTCACAAACTCTATGAATTGCTTGCGTCCATATTAAGGCTTGCTGGTCTATCTGCTGTT
GCTGGTTGCACAGATACATTATCTTTGTCCATTCTGATAGAGACACCATTGGAATCTCTTCATCATGCCATTTCTGAGTTGCGCTTAAGAGATTACAGAGATGAAGATTGGTGTACATGGTATTCCAGACATGAGTCAGGTCGGCTTCTGCGCGCTGCAGGTACTGCAGTTTGTATGCTAAATGAAATCATTTATGGTGC
ATCAAACAGACTGACATACACATATTTAGGCTTGTTCAAGAGCATCAACAGACCACGAGAAAGGCGCATGGAAAAAAGGGTAGTAACTTCAGACAGCTCATCAAAACATATTCCGTGTTCTTTAAAAAAATGGGAAATGGACCAAGGAACAGACATAAATCAGCATGTTGTTGAGTGCGTGGGTATCATATTACATGAAT
ACCTCTCTTCTGAAATTTGGGATCTTCCAATAGATTTTTCCTCTCCTGGCTTAAGACAGGGTTTCACCAATCAGCAATTGCCTTGGCATTTTTTCCATGACACTTCAATGCTACAACAGGTTATAGTAGAAGGATTTGGTGTATTTGGAATATCACTTGGCACGTCTTTTGAAACCAGTGGGTTCTTATATTCTTCCCTT
TACTTATTGTTGGAGAAGCTTACCTGTTCAAATTATCACATCAGCAGTGCAGCAGATATTGCTCTGAGAATGTTATCCGAATCTGCTGGTTATCCATCGGTAAAAGATTTGGTGGTGGCAAATGCAGATTATATAATCGATTCATTGTGTCGTCAACTACGTCATGTGACCCTCTATCCTCATGCACCTAACATACTTGC
TGCTGTACTCTCCTCCATTGGGGCAGCTCATGATATCTTGCCATTACTAGTGGAGCCGATGCGTTCCATTTCATTAGAACTTGAGGTACTTGCACGACATCAACATCCAGATTTGACAGTTCCTATATTGAAGGCTTTGAATGAAATTGTGAAGGCATCAAGGCAGGAAACACATTCATTAACTCAAGAATCTTTGGAGT
ATAGCTCACATATCAAATCTGAAATTCAACAACTGAAAGAGAGTAACCAAAGTCTTCTGTCAAGATCCTCTGTAGTGTCTTCAGGCGTATCTTCTGGTTCTTGTTACAGAGACACTGATATCTCTCTGACTACAGATTTTAATGAGGACATCAAAGGGGGATTCAGTGAAGGTGATGCATCTTTGGATCATTGGGAACAG
GTTTTCCTGGTATTGGATGATAGGAAAAGATATCGGCAGTCAGTGGGAAATGTTGTAGGGTCATGCTTGACTGCGTCTATTCCACTTCTAGGTTCAAATGAACAAGAGGCATGTCTGATGTCACTAGATCTAGTTGAGAATGGGATGGCTACACTTGCTATGATAGAGGAAGCACTCAGAAATGAAACAGAATCTAGAGA
AGCAATTGAGTGGGTGGCAAAACAATTTTCATTTCACACTCTTCAGGACAGCATAAATTCTTTAGATGCAGTAAATGATGGAAACAGGCTTTTACCTGCAATGAACAAAATATGGCCTTATCTGATTGTTTGCCTCAAACACACAAAACCTCAGGTAGCAGTTAGATGTATGGGTGTGATAGGCCATGTGGTTCGTGTTT
GTGGAGGGGATTTTTTTATCCGCCGCTTTAAAACCGATGGATCCCATTTTTTCAGGCTGTTATCCCTGGGTGTTTGCTCAATAAAGACCGAGTTCCAGGCAGAGAAATCTATGCTGCTTCCTTTTAGAAGGCATAGCAAATCTATTGATCAAGCAGATATGGCAGAAGGATCTCTGTTCAAAGTACAAGAAGCCTTTTTT
AAAATGATCGCAACCATTGCTAGGGACAAGAAAAGTGCTCGTGCTCTAGAGGCAGTGTTGAAACAGATGGCAGGTTTGTGCGTGGGTTTTGCTTGTGGCAGTCAAATGTTGCAGGAAGCTGCTACAAATGCATTGCTTGGCTTGTCATGCATTGACCCAGACCTTTTTTGGTTACTTTTGGCTGACATAGCTTACTCAGT
GGATGGTAAAGAAGTTCCAAGTCCACCAGGTCCAGACTTCCCAAAGATTTCTCAACTTCTTCCTCAGTCCCCAAAGAAATATCTTTGGGTTCAATATGCAGGCCAAGATTTTGGTTTGAAGTCTGATGTTTCAGTGGCAATCTTGTTGCTTGTAAAGATAGATTCTTGCCATCATGCTGATGCCTAGTGATATATTTCAA
CCTTCCATACAAAAATATTCTTAAAAGCAATGAAATGCTCGTTCACCTGTAACTAGTACTTACAGGTTGAAATGTACCATGCTTTTGTTCATAGACTAGTTGACTGGTGGCAGTCTCGCGAGATAGCTTATATACATGATACGTTGCATGATGCAGATTGTAGGCTTAAGTTTTGTAGATGTCGATCAATTAAATTTCAT
GTCTATGCAATTGACTGACCTGGCCCTGATTGTATTGTCTGTTTGTCAAAATCCATTCTGATTTATAACAGTTTTGGCAATTTTT
Intron 3 GTACTGATTC ... TCTCTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.19 | 7.5 | 3 | 10 |
| A2 | 41.66 | 1.5 | 4 | 1 |
| A3 | 44.59 | 10 | 2 | 8 |
| A4 | 53.85 | 6 | 1 | 7 |
| A5 | 80 | 1 | 1 | 4 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | -1 | 0 | 0 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 50 | 1 | 0.5 | 1 |
| A10 | -1 | 0 | 0.5 | 0 |
>TRINITY_DN119781_c11_g1_i5 from sample A1 / Example spliced isoformTGTTGTTCAATTCACTTCTTCAAGCCTCAGGCTAAGATTGTGAAGAGCAATTACCTTTGCCCATTTGGTAGAGGCTCAAGTCTTTTGATGCATATGGATCCTGTGGAAACAAAAACCTCTATATTGCAAGAAGTAAACTATATTTTAAAAATATCATCTTTTATGTCTACTGCTGTTGTACATGGTGCACTTGAAGATTT
TTTTTTCAGGTGATAAGACAAGTAATTTGACTTTAAGATTGCAGAAGCAGAAGCTAGAAGAGGACATCGAGGAAGTGGGAAACTTCGTTGGGACTGCAGATGCATTGGCTTTCTTTTTGCCAGGGGTTGTTAGTGGTTTGGCAAAGGTCTTGCGCATCTCAAAGTCCATAACAGCCGATTCCTTCCAAGTAACCTCGGGT
GCAGCTGGAAGTATTGGGGCAATTGAGCAAGCCATTAAAGGTTTGGCTGAATTTTTAGTCCTATCCTTTGGAGATCAGAAGAATCCCACCCAAATAGATGAGAGTGATCCAGAGCTTTTTAATGAGGCTATGTCAGGACCTTTTGCAAGAAAGCCTAAGTCAGCAGAGTCAACCTTGGAAGCTCTTCGATATTTATCTGC
ACGGACCCATGCTCAAAATGTTGTTGAAGTTCAGAAAGATAGAAAAGGAACAAAAGATTCAAATTTCCGTGTTCATCGAGATAAGGAATGGCTAGAGGAGACAGCACAACGTGTAGATTGTCTTCTATCTCCAACATTCCCAATTTTATGTGCTCACCCAGCAAAAGTAGTTAGGCTTGGTCTTGCTGAGGCTGCTGGAG
CATTGTTGATAAGCTGTAATAACACATTAAGGAGGATCAAAGCAATGCTTTTGGAGTGTTTATTTGCGTTAGCTTGTGATGATTGGGAATCTGTGGCTTCAACTGCTCATGACTTTCTTGTCTTATTCTTATCCGATGGGAGATTTATGCAAGAAAATGAACTAAATGAGGTCTTCAACAGGCTTATTGAAAGGTTACCA
AAATCAATACTTACAGGAGATGAAGCTGTGGCATTAATACATGCTCGTAGGTTGCTTGCAGCCATGTATTTTTCTGGTCCTCAGGGTGTGAGCTGCCAGCTTTTTCACTCCCCGGCTGCAGTAAGTCGGTTTTTGGAGGTTATGAGACAGTCCTTGAGCCATACTTCTGCATTCACAGGCCCTATAGGTCAGCTAGTCCA
TCATAAAATACAATCAGCAGGGTATTTACCTGCAATCTTAGAGTTGAGCTCTACGAAGGAATATGAAAGTCCTCAATTAAAATCATCTGTTAGTGGCTCAGGATTTCAAATTCTTCACTCAGAAGGGCCAGAATTGGGAAAACAGTTGACAGATATGGGTCTAAATGGCCGGCTCCCACATATGCCTCCTTGGTTTACCC
ATGCTGGTGGTCACAAACTCTATGAATTGCTTGCGTCCATATTAAGGCTTGCTGGTCTATCTGCTGTTGCTGGTTGCACAGAGACATTATCTTTGTCTATTCTGATAGAGATACCATTGGAATCTCTTCGTCATGCCATTTCTGAGTTGCGCTTAAGAGATTACAGAGATGAAGATTGGTGTACATGGTATTCCAGACAT
GAGTCAGGTCGGCTTCTGCGTGCTGCAGGTACTGCAGTTTGTATGCTAAATGAAATCATTTATGGTGCATCAAACAGACTGACATACACATATTTAGGCTTGTTCAAGAGCATCAACAGACCTCGAGAAAGGTGCATGGAAAAAAGGGTAGTAACTTCAGACAGCTCATCAAAACATATTCCGTGTTCTTTAAAAAAATG
GGAAATGGACCAAGGAACAGACATAAATCAGCATGTTGTTGAGTGCGTGGGTATCATATTACATGAATACCTCTCTTCTGAAATTTGGGATCTTCCAATAGATTTTTCCTCTCCTGGCTTAAGACAGGGTTTCACCAATCAGCAATTGCCTTGGCATTTTTTCCATGACACTTCAATGCTACAACAGGTTATAGTAGAAG
GATTTGGTGTATTTGGAATATCACTTGGCACGTCTTTTGAAACCAGTGGGTTCTTATATTCTTCCCTTTACTTATTGTTGGAGAAGCTTACCTGTTCAAATTATCACATCAGCAGTGCAGCAGATATTGCTCTGAGAATGTTATCCGAATCTGCTGGTTATCCATCGGTAAAAGATTTGGTGGTGGCAAATGCAGATTAT
ATAATCGATTCATTGTGTCGTCAACTACGTCATGTGACCCTCTATCCTCATGCACCTAACATACTTGCTGCTGTACTCTCCTCCATTGGGGCAGCTCATGATATCTTGCCATTACTAGTGGAGCCGATGCGTTCCATTTCATTAGAACTTGAGGTACTTGCACGACATCAACATCCAGATTTGACAGTTCCTATATTGAA
GGCTTTGAATGAAATTGTGAAGGCATCAAGGCAGGAAACACATTCATTAACTCAAGAATCTTTGGAGTATAGCTCACATATCAAATCTGAAATTCAACAACTGAAAGAGAGTAACCAAAGTCTTCTGTCAAGATCCTCTGTAGTGTCTTCAGGCGTATCTTCTGGTTCTTGTTACAGAGACACTGATATCTCTCTGACTA
CAGATTTTAATGAGGACATCAAAGGGGGATTCAGTGAAGGTGATGCATCTTTGGATCATTGGGAACAGGTTTTCCTGGTATTGGATGATAGGAAAAGATATCGGCAGTCAGTGGGAAATGTTGTAGGGTCATGCTTGACTGCGTCTATTCCACTTCTAGGTTCAAATGAACAAGAGGCATGTCTGATGTCACTAGATCTA
GTTGAGAATGGGATGGCTACACTTGCTATGATAGAGGAAGCACTCAGAAATGAAACAGAATCTAGAGAAGCAATTGAGTGGGTGGCAAAACAATTTTCATTTCACACTCTTCAGGACAGCATAAATTCTTTAGATGCAGTAAATGATGGAAACAGGCTTTTACCTGCAATGAACAAAATATGGCCTTATCTGATTGTTTG
CCTCAAACACACAAAACCTCAGGTAGCAGTTAGATGTATGGGTGTGATAGGCCATGTGGTTCGTGTTTGTGGAGGGGATTTTTTTATCCGCCGCTTTAAAACCGATGGATCCCATTTTTTCAGGCTGTTATCCCTGGGTGTTTGCTCAATAAAGACCGAGTTCCAGGCAGAGAAATCTATGCTGCTTCCTTTTAGAAGGC
ATAGCAAATCTATTGATCAAGCAGATATGGCAGAAGGATCTCTGTTCAAAGTACAAGAAGCCTTTTTTTAAAATGATTGCAACCATTGCTAGGGACAAGAAGAGTGCTCGTGCTCTAGAGGCAGTGTTGAAACAGATGGCAGGTTTGTGCGTGGGTTTTGCTTGTGGCAATCAAATGTTGCAGGAAGCTGCTACAAATGC
ATTGCTTGGCTTGTCATGCATTGACCCAGACCTTGTTTGGTTACTTTTGGCTGACATAGCTTACTCAGTGGATGGTAAAGAAGTTCCAAGTCCACCAGGTCCAGACTTCCCAAAGATTTCTCAACTTCTTCCTCAGTCCCCAAAGAAATATCTTTGGGTTCAATATGCAGGCCAAGATTTTGGTTTGAAGTCTGATGTTT
CAGTGGCAATCTTGTTGCTTGTAAAGATAGATTCTTGCCATCATGCTGATGCCTAGTGATATATTTCAACCTTCCATACAAAAATATTCTTAAAAGCAATGAAATGCTCGTTCACCTGTAACTAGTACTTACAGGTTGAAATGTACCATGCTTTTGTTCATAGACTAGTTGACTGGTGGCAGTCTCTCGAGATAGCTTAT
ATACATGATACGTTGCATGATGCAGATTGTAGGCTTAAGTTTTGTAGATGTCGATCAATTAAATTTCATGTCTATGCAATTGACTGACCTGGCCCTGATTGTATTGTCTGTTTGTCAAAATCCATTCTGATTTATAACAGTTTTGGCAAGTTTTGCACTCAGTTGAACTATATCTATTGCTCTTTTGTCCTATGGAATCG
TATATGGGTA
>TRINITY_DN119781_c11_g1_i2 from sample A1 / Example unspliced isoform:AGTCATCCACAGACAGAATCATTTAGTAATGGAGAGTGTTTAGTTGCATTTCTTCAGTCAGAAGATGCATCTGCAGCAGTAGGGCACTTACAATCACTACTTCTTCAGATTGCAGAAGCAGAAGCTAGAAGAGGACATCGAGGAAGTGGGAAACTTCgtactgattctatctcaactcttagagtacttatatccaaggt
ggtaaaatgacatcttgatgataacaaagaagtaatctgatgtttttgcttattttgatatttatatgatattgattgactatgcacaaggcagaaattagagtatcttttctttctgaaaggtattttgttacttacttgtacatttgccttctcttatagGTTGGGACTGCAGATGCATTGGCTTTCTTTTTGCCAGG
GGTTGTTAGTGGTTTGGCAAAGGTCTTGCGCATCTCAAAGTCCATAACAGCCGATTCCTTCCAAGTAACCTCGGGTGCAGCTGGAAGTATTGGGGCAATTGAGCAAGCCATTAAAGGTTTGGCTGAATTTTTAGTCCTATCCTTTGGAGATCAGAAGAATCCCACCCAAATAGATGAGAGTGATCCAGAGCTTTTTAATG
AGGCTATGTCAGGACCTTTTGCAAGAAAGCCTAAGTCAGCAGAGTCAACCTTGGAAGCTCTTCGATATTTATCTGCACGGACCCATGCTCAAAATGTTGTTGAAGTTCAGAAAGATAGAAAAGGAACAAAAGATTCAAATTTCCGTGTTCATCGAGATAAGGAATGGCTAGAGGAGACAGCACAACGTGTAGATTGTCTT
CTATCTCCAACATTCCCAATTTTATGTGCTCACCCAGCAAAAGTAGTTAGGCTTGGTCTTGCTGAGGCTGCTGGAGCATTGTTGATAAGCTGTAATAACACATTAAGGAGGATCAAAGCAATGCTTTTGGAGTGTTTATTTGCGTTAGCTTGTGATGATTGGGAATCTGTGGCTTCAACTGCTCATGACTTTCTTGTCTT
ATTCTTATCCGATGGGAGATTTATGCAAGAAAATGAACTAAATGAGGTCTTCAACAGGCTTATTGAAAGGTTACCAAAATCAATACTTACAGGAGATGAAGCTGTGGCATTAATACATGCTCGTAGGTTGCTTGCAGCCATGTATTTTTCTGGTCCTCAGGGTGTGAGCTGCCAGCTTTTTCACTCCCCGGCTGCAGTAA
GTCGGTTTTTGGAGGTTATGAGACAGTCCTTGAGCCATACTTCTGCATTCACAGGCCCTATAGGTCAGCTAGTCCATCATAAAATACAATCAGCAGGGTATTTACCTGCAATCTTAGAGTTGAGCTCTACGAAGGAATATGAAAGTCCTCAATTAAAATCATCTGTTAGTGGCTCAGGATTTCAAATTCTTCACTCAGAA
GGGCCAGAATTGGGAAAACAGTTGACAGATATGGGTCTAAATGGCCGGCTCCCACATATGCCTCCTTGGTTTACCCATGCTGGTGGTCACAAACTCTATGAATTGCTTGCGTCCATATTAAGGCTTGCTGGTCTATCTGCTGTTGCTGGTTGCACAGAGACATTATCTTTGTCTATTCTGATAGAGATACCATTGGAATC
TCTTCGTCATGCCATTTCTGAGTTGCGCTTAAGAGATTACAGAGATGAAGATTGGTGTACATGGTATTCCAGACATGAGTCAGGTCGGCTTCTGCGTGCTGCAGGTACTGCAGTTTGTATGCTAAATGAAATCATTTATGGTGCATCAAACAGACTGACATACACATATTTAGGCTTGTTCAAGAGCATCAACAGACCTC
GAGAAAGGTGCATGGAAAAAAGGGTAGTAACTTCAGACAGCTCATCAAAACATATTCCGTGTTCTTTAAAAAAATGGGAAATGGACCAAGGAACAGACATAAATCAGCATGTTGTTGAGTGCGTGGGTATCATATTACATGAATACCTCTCTTCTGAAATTTGGGATCTTCCAATAGATTTTTCCTCTCCTGGCTTAAGA
CAGGGTTTCACCAATCAGCAATTGCCTTGGCATTTTTTCCATGACACTTCAATGCTACAACAGGTTATAGTAGAAGGATTTGGTGTATTTGGAATATCACTTGGCACGTCTTTTGAAACCAGTGGGTTCTTATATTCTTCCCTTTACTTATTGTTGGAGAAGCTTACCTGTTCAAATTATCACATCAGCAGTGCAGCAGA
TATTGCTCTGAGAATGTTATCCGAATCTGCTGGTTATCCATCGGTAAAAGATTTGGTGGTGGCAAATGCAGATTATATAATCGATTCATTGTGTCGTCAACTACGTCATGTGACCCTCTATCCTCATGCACCTAACATACTTGCTGCTGTACTCTCCTCCATTGGGGCAGCTCATGATATCTTGCCATTACTAGTGGAGC
CGATGCGTTCCATTTCATTAGAACTTGAGGTACTTGCACGACATCAACATCCAGATTTGACAGTTCCTATATTGAAGGCTTTGAATGAAATTGTGAAGGCATCAAGGCAGGAAACACATTCATTAACTCAAGAATCTTTGGAGTATAGCTCACATATCAAATCTGAAATTCAACAACTGAAAGAGAGTAACCAAAGTCTT
CTGTCAAGATCCTCTGTAGTGTCTTCAGGCGTATCTTCTGGTTCTTGTTACAGAGACACTGATATCTCTCTGACTACAGATTTTAATGAGGACATCAAAGGGGGATTCAGTGAAGGTGATGCATCTTTGGATCATTGGGAACAGGTTTTCCTGGTATTGGATGATAGGAAAAGATATCGGCAGTCAGTGGGAAATGTTGT
AGGGTCATGCTTGACTGCGTCTATTCCACTTCTAGGTTCAAATGAACAAGAGGCATGTCTGATGTCACTAGATCTAGTTGAGAATGGGATGGCTACACTTGCTATGATAGAGGAAGCACTCAGAAATGAAACAGAATCTAGAGAAGCAATTGAGTGGGTGGCAAAACAATTTTCATTTCACACTCTTCAGGACAGCATAA
ATTCTTTAGATGCAGTAAATGATGGAAACAGGCTTTTACCTGCAATGAACAAAATATGGCCTTATCTGATTGTTTGCCTCAAACACACAAAACCTCAGGTAGCAGTTAGATGTATGGGTGTGATAGGCCATGTGGTTCGTGTTTGTGGAGGGGATTTTTTTATCCGCCGCTTTAAAACCGATGGATCCCATTTTTTCAGG
CTGTTATCCCTGGGTGTTTGCTCAATAAAGACCGAGTTCCAGGCAGAGAAATCTATGCTGCTTCCTTTTAGAAGGCATAGCAAATCTATTGATCAAGCAGATATGGCAGAAGGATCTCTGTTCAAAGTACAAGAAGCCTTTTTTTAAAATGATTGCAACCATTGCTAGGGACAAGAAGAGTGCTCGTGCTCTAGAGGCAG
TGTTGAAACAGATGGCAGGTTTGTGCGTGGGTTTTGCTTGTGGCAATCAAATGTTGCAGGAAGCTGCTACAAATGCATTGCTTGGCTTGTCATGCATTGACCCAGACCTTGTTTGGTTACTTTTGGCTGACATAGCTTACTCAGTGGATGGTAAAGAAGTTCCAAGTCCACCAGGTCCAGACTTCCCAAAGATTTCTCAA
CTTCTTCCTCAGTCCCCAAAGAAATATCTTTGGGTTCAATATGCAGGCCAAGATTTTGGTTTGAAGTCTGATGTTTCAGTGGCAATCTTGTTGCTTGTAAAGATAGATTCTTGCCATCATGCTGATGCCTAGTGATATATTTCAACCTTCCATACAAAAATATTCTTAAAAGCAATGAAATGCTCGTTCACCTGTAACTA
GTACTTACAGGTTGAAATGTACCATGCTTTTGTTCATAGACTAGTTGACTGGTGGCAGTCTCTCGAGATAGCTTATATACATGATACGTTGCATGATGCAGATTGTAGGCTTAAGTTTTGTAGATGTCGATCAATTAAATTTCATGTCTATGCAATTGACTGACCTGGCCCTGATTGTATTGTCTGTTTGTCAAAATCCA
TTCTGATTTATAACAGTTTTGGCAAGTTTTGCACTCAGTTGAACTATATCTATTGCTCTTTTGTCCTATGGAATCGTATATGGGTA