sp|Q9SEX2|KTNA1_ARATH ----> Katanin p60 ATPase-containing subunit A1
Intron 1 GTGAGAGGCT ... TGTTGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.66 | 66.3 | 94 | 25 |
| A2 | 53.23 | 58 | 66 | 39 |
| A3 | 57.64 | 73.5 | 100 | 34 |
| A4 | 52.82 | 60.8 | 68 | 20 |
| A5 | 64.29 | 25 | 45 | 22 |
| A6 | 56.4 | 126 | 163 | 1 |
| A7 | 55.61 | 164.5 | 206 | 13 |
| A8 | 59.66 | 89.3 | 132 | 6 |
| A9 | 56.23 | 163.5 | 210 | 9 |
| A10 | 56.62 | 141 | 184 | 11 |
>TRINITY_DN47615_c2_g1_i13 from sample A7 / Example spliced isoformGAAATTTGACCCTGTGACATGATGGAAACAAAACCCACCCAAGCCAAGTCAACTGATCTCGGCTTAGAAGGTGCTGAGAAATGGATTTGATAAAGCAGAAAATGTCTAAGTCCAAGGAGGAAAGGTTTAAACACAATGGAGAGGAGGGGAACAAATTACATGCGGACATGATAGTAGGGGGAAGATGAGAATTAGCTTTC
GGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGC
GACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGCGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAA
TACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGGGCATATTTGCTTCGAGTGATAGGTGGAA
TATCGGTTGCTTATGACGGGGTTTGATTAAGCTGGACCAGAATTTTTAACTTGCCGATATTCAGATTTAATGATTTATGTCAATGGAGCAGTAGTTTACTGGTGAGGCTGACGTTGACTGAGTGACAAATCATTCACTAGGGTTCCATTCTCGCCGTGGTCCGCCCTTCCCATATAGCATGACCTTCAAAGGAATGGGGA
TGGAGTGATTCCCAGGTAGTTTTAGCAGAATAGGTACCCCAAACTCAAACTACTTGGAATCGGCAATGACTCAGCAAACCTAAAGTGGGCCAACTTGGCAAAACTTCGGCACATCAGGGAACAGGGAATATCAACTTTGCGAAACTTGGAAAACTTATTGACCAGAACAGAGAATGCCTATTCTGACTAGGAGTTTTGAC
TTGGCTCTCCAGCTCAGAGTGTGGAGACAACCCAGGACTACTTGCAGAGTTAGAAAGAGTTACGTTTCTCCGATACACTTCAGACCTGGCACTGTAGTTGAAACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGT
TGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTTGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGA
CTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGAC
CACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCG
AGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCAAAATGACCAATGCCGGAATTGGATAAAA
TGTTGTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGC
AAATTGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACA
ATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTT
AAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCC
CAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTT
GTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACA
ATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGT
ATTTGCCGGGATATTCTTCGAGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGC
AGTGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTA
GGCGGTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCT
GGCTCTGAGCTACCATACGATCTTATGGTTGAAAGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGC
TCTTAAAATCACAAGGCCATCAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGT
TCTTTCATTCATTTGAAGCCCTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTG
GGTTTATATCCCATATCTATTGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCCGGAATGAGTTTAGTCTTGATTCCTCAAAGCTGAACACAGTAATATTTTCAAGTGGCAAGTCAACTTACGCTTCATCATAAGTTTCCAAGTT
TTGACATTGACATAATTTTTGCCACTATTAGAGTTTGAACACATATAGCACGAAGAGAACTGGCTGATCAAATGTGCAAGGTGGTTTATACAGAATTAATAGCAGATTCAAAATGAGAGGTGGCTCCAAGAGTCAAAATTAGAGCAAACGAATATAAAGTACAATAGAACATAAGCCGAATCACTGTACAATCACTAATT
ATTCAATAAAGAGAATTGTTCAAAAAAATGTAATGAGTTGCACGTTGCCTCCGTCTCATCCTTTTTGTTCATGTTGCTGTCATATCCTGAATTTAAACCAATGGGATTGGAATGT
>TRINITY_DN47615_c2_g1_i8 from sample A7 / Example unspliced isoform:GAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttaactt
ttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagtgtgatagtggcatctgtttttattata
aatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagAAAATGACCAATGCCGGAATTGGATAAAATGTTGTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAA
ACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGCAAATTGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGAT
CCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGG
TTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATG
AAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCC
AGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAA
GCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGA
TGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGT
Intron 2 GTACACAATT ... CAATTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.46 | 97.6 | 3 | 3 |
| A2 | 2.14 | 129.6 | 0 | 5 |
| A3 | 4.34 | 119.5 | 2 | 8 |
| A4 | 6.52 | 63.5 | 4 | 4 |
| A5 | 9.01 | 52.6 | 0 | 10 |
| A6 | 1.05 | 125.1 | 2 | 0 |
| A7 | 0 | 228.9 | 0 | 0 |
| A8 | 0 | 187.9 | 0 | 0 |
| A9 | 0 | 217.5 | 0 | 0 |
| A10 | 0 | 223.8 | 0 | 0 |
>TRINITY_DN128021_c4_g1_i3 from sample A1 / Example spliced isoformGGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGA
CGAGGCACTTATCAAGTCTGTATTTCTCCAGTGTAGCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGAGAAAGAGAGCTGAAGAATCCAACATAACAGAAAACAATGAGAACCCAGCTGATAT
CTTGACTGGAGCCAGTATCGATGATAGCATTAAAGGACGTGGTGGTGGTAACAGTAATTCGACAGCTGGGTTTGCATTTAAGGCCATACCTGTGGCCTTCTCTATAAAAAGGAAGACTCCCGCAAATTCAAGCAAAACTGTTGAAACAACCGTGGACAGACCCAAGGAAGAAACAGTTTCAAATTTGGGAGTTCAGGACA
GTACCGTACATACGGGCTTATCCTCACTTTGTGCAGCTTATGACAGTGACTCCAGTGACTAGGAAGCAGCATATTTCTGGCCACCGAAAATGTAAGACAAAATAGGGTGTATTGACAAATAAAATTCCTCATCTTTACAGTGTATTATGTTGTACCTCCAGAATTGGAAATTTTTCTTTTGCTCAGTTTTTGGTGAGCGC
ATTGCAGCCACATATCAATTCAAAATTTTGGTACAGAAAATACATATAAAAGTGCAATGTCGATGTTTCTTGTTAATAAACTATTTATTAGTATATGGAGGTTCAATCTGCAGACTTGGGCGAAGCTCATTTCAGTGCTTGCAATAAACTGTCAGGAAATACATACTGA
>TRINITY_DN128021_c4_g1_i7 from sample A1 / Example unspliced isoform:GGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGTAAGGCTTACCTGGTTCTGACTTGATTTATGTGTTTGTGTACTAATACAACTCTTTGACATGCAACTTTCCCTTCAATTTGTTGTAAC
TTTTATTGTTGCCTTGCCCTGGGTTCCTAAATTCCAAGTTTCAGTGATGCAGTATTAATGAACAGATTTTGTTTCTGAAATTAAATGTTACACTGGAGTCATAAGATTGAATGACGTGGAAATAACAAACAGATTTGATGTCTGAAATTAAATGTTAAGAATTATAAGATCAATGAAACTGAAAATTATCAATGGAACTG
AAACTTTGCTTTTCTAATTTGTGACTATTTTCCCGGTTCTTCAGTACTCTTCAACTCTAGCATGCTGTCATGTAGATTAATTTATCTGTCTTTTCTGGAGATTTAAAGTTCTGCCAAACTTGTTTCAGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGgtacac
aattttttatttactattgaaccaacacttatatttaagacattttaaggggggaaattgcaaggcgtccttcctctgctgacctttgattgctatcaattggcagGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGTTGGTATCTGGAATACTTGCATGGGTTCTGTAGGCTAGA
TGACAGTCTATGCTTTTGTTAGTATTTTCTCCCTTATTTTTGCAGCCTTTGAATGTACAATCTTCACTTAATTTGCCTTCAACTGACATGTAGTGTAGCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGG
TTGAAGGTAAGACATAGAAATTTTCCACATTGCCTTGAAAACTGTGTTAAAATATTCGGACACTAGGGTAATTTAAAATCCATTATTTCAAGTTCCCAAAGTTTTTAGTTGTTAACAGTTGTCTGATTCTGGCCTCAAAAATACTAAGGTAACAGTAATACAAGACCCATGGCAAATTAAGTGCTGTGAAAACTACTTTT
GACTTTCAAAATTGACAAATCCTGGATAAGATATCCTTAAAATGTCAACCAATTAGCTTTCTACTTTTTGGATGTTAATAACTTCCAACACTTTCTATGAAGGAAGATCAGCAAGAATTGGATCCCAGAATTACGCCAGGCATGTGGATCTCAAGGTGGCTTATAATTCCACCCCGTTAACTTTATTAAATTAAGAATTA
ATAATAATAATAATAATAATAACAATAACAACAACAACACTACAATTAACTTAATTCTTAAATATAAATATTGACTGAGGCCGACCTTAATTATTATTATTATTTTTAAGTTAATGACACATCAATACAAATCTCTAGTTGTATTCTCTCTTCACAAATCATTTCCGATGACGCACCACACTGGTTTGGTCCAAAACGTC
AAGTTAAAAATGAAAGCAGTCTATTTGGAAGATTCCGTAAATATTATGTTGTAGATGTTGATTTACATGGTTGCATGGGAACTAATCCCAGGGTTGGTGAACTAGATGCCAACGTTTTCCCATTCTGTGGAACTTGGGAGCTGGCTTAAAATGTTCTAGTTTGGGTGGGAGCGGCTCTAGGATTGGCTGGAATCTTTCAG
GAGCTTCGGAGATGCTGCTCAATAGGCCAGGAACTTTTACATGTTCTTCGCCATGTTGCCTACACAAAGGGAAACAAACAGGTGCATTTTTGGTACTGCTTTAGTGCCACATCAGCACTTTTGGAATCCATAAACGACCAGAAAGGCATGAAAAAACATAAATAATATTTCAATAATAAAAAATAAAGCAAAAACCCTAC
CTTACTTTATAAACTCATACCCATGGAATAACACCTTTCAGCATTTGCATTTGTCGTTCATGCTGTGAGCATGCGAGTCTTGTAGTAACTTGGAGATCAACTTGGAGCTTATTGGAGAGTTGAGGAGTGCCATTGGGCAGCAATACAAGTATTAGATTGCTGTGGAGGGGCATTCTAGTATTATTCTCCAGGTATTTTCA
GATTTCTTACGGCCAGGAAACTCTTGTTGCAGTTTGTGAAGAAAAAAAAACTAAATGCCAATAAAAAATAGTGAGGATTTTGAGGAATGGGAATACACTGAGTGAAACCATGTTTTTGCGCCGAGAGGCGATCTACAGCCCAGTATGAGGGAGATCTTGTAACATGTGTGAGTTTGTC
Intron 3 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.94 | 187 | 93 | 52 |
| A2 | 22.15 | 181 | 66 | 37 |
| A3 | 23.13 | 221 | 98 | 35 |
| A4 | 23.47 | 163 | 65 | 35 |
| A5 | 24.7 | 93 | 45 | 16 |
| A6 | 21.89 | 471 | 163 | 101 |
| A7 | 22.1 | 548 | 204 | 107 |
| A8 | 25.35 | 377 | 131 | 125 |
| A9 | 23.23 | 499 | 207 | 95 |
| A10 | 24.51 | 439 | 182 | 103 |
>TRINITY_DN43890_c0_g1_i15 from sample A8 / Example spliced isoformCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATAGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCA
GAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAAC
CAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGGGCATATTTGCTTCGAGTGATAGGTGGAATATCGGTTGCTTATGACGGGGTTTGATTAAGCTGGACCAGAATTTTTAACTTGCCGA
TATTCAGATTTAATGATTTATGTCAATGGAGCAGTAGTTTACTGGTGAGGCTGACGTTGACTGAGTGACAAATCATTCACTAGGGTTCCATTCTCGCCGTGGTCCGCCCTTCCCATATAGCATGACCTTCAAAGGAATGGGGATGGAGTGATTCCCAGGTAGTTTTAGCAGAATAGGTACCCCAAACTCAAACTACTTGG
AATCGGCAATGACTCAGCAAACCTAAAGTGGGCCAACTTGGCAAAACTTCGGCACATCAGGGAACAGGGAATATCAACTTTGCGAAACTTGGAAAACTTATTGACCAGAACAGAGAATGCCTATTCTGACTAGGAGTTTTGACTTGGCTCTCCAGCTCAGAGTGTGGAGACAACCCAGGACTACTTGCAGAGTTAGAAAG
AGTTACGTTTCTCCGATACACTTCAGACCTGGCACTGTAGTTGAAACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGC
AGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTTGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAA
AGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTACGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCG
TAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAA
TGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTA
CCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTC
TTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGT
>TRINITY_DN43890_c0_g1_i3 from sample A8 / Example unspliced isoform:CTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATAGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCA
GAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAAC
CAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGGGCATATTTGCTTCGAGTGATAGGTGGAATATCGGTTGCTTATGACGGGGTTTGATTAAGCTGGACCAGAATTTTTAACTTGCCGA
TATTCAGATTTAATGATTTATGTCAATGGAGCAGTAGTTTACTGGTGAGGCTGACGTTGACTGAGTGACAAATCATTCACTAGGGTTCCATTCTCGCCGTGGTCCGCCCTTCCCATATAGCATGACCTTCAAAGGAATGGGGATGGAGTGATTCCCAGGTAGTTTTAGCAGAATAGGTACCCCAAACTCAAACTACTTGG
AATCGGCAATGACTCAGCAAACCTAAAGTGGGCCAACTTGGCAAAACTTCGGCACATCAGGGAACAGGGAATATCAACTTTGCGAAACTTGGAAAACTTATTGACCAGAACAGAGAATGCCTATTCTGACTAGGAGTTTTGACTTGGCTCTCCAGCTCAGAGTGTGGAGACAACCCAGGACTACTTGCAGAGTTAGAAAG
AGTTACGTTTCTCCGATACACTTCAGACCTGGCACTGTAGTTGAAACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGC
AGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTTGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAA
AGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTACGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCG
TAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAA
TGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtga
catcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcggattttttcccccagcgttagtgtgatagtggcatctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttcta
ctttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcattggaaaacttttacagtaatggctataaattaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtat
cattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggttgttgattttggctgaaatgtatttttttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagt
gtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaatctagggaaaagtaacagttctttccaatcctcaacaattatctctgtaagagaagagggttgctaaagcaaaagggattcttttggattttataaaggaccacctgattcct
cacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaaaggacagattcacacaaacatgcatgagtaattcagacattgtggagggctaccttatgaagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaaga
tgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctcccaacttatgagaaaccttggggcatcattgtctaagaagaaacaacacaagaaacagtgccagctcgaatagaagaggaccaagagtttacacttatcaggaaggtgaggaaag
ctggaaagaaaagaggacccacaagggtaaagaaagaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgttacaagtgtcacaagaaaggacactttactaatcaatgttccaagaagaggaaaggtaagcaacaacatcagtagtttgcacggagtgcaaatgcttcagctggagtggat
gagtcagcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaatggaatgtcatggcatatgactttcagcaggaaaaatttcagcaagtttcaagaacaagatggccatacaagtggagttgggtgatgttgctacatacttggtggctggaat
caacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTACCGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCC
TAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGT
Intron 4 GTGAGAGGCT ... TGTTGGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.92 | 66.3 | 95 | 25 |
| A2 | 53.23 | 58 | 66 | 39 |
| A3 | 57.89 | 73.5 | 101 | 34 |
| A4 | 53.19 | 60.8 | 69 | 20 |
| A5 | 64.29 | 25 | 45 | 22 |
| A6 | 56.4 | 126 | 163 | 1 |
| A7 | 55.61 | 164.5 | 206 | 13 |
| A8 | 59.66 | 89.3 | 132 | 6 |
| A9 | 56.23 | 163.5 | 210 | 9 |
| A10 | 56.62 | 141 | 184 | 11 |
>TRINITY_DN47615_c2_g1_i13 from sample A7 / Example spliced isoformGAAATTTGACCCTGTGACATGATGGAAACAAAACCCACCCAAGCCAAGTCAACTGATCTCGGCTTAGAAGGTGCTGAGAAATGGATTTGATAAAGCAGAAAATGTCTAAGTCCAAGGAGGAAAGGTTTAAACACAATGGAGAGGAGGGGAACAAATTACATGCGGACATGATAGTAGGGGGAAGATGAGAATTAGCTTTC
GGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGC
GACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGCGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAA
TACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGGGCATATTTGCTTCGAGTGATAGGTGGAA
TATCGGTTGCTTATGACGGGGTTTGATTAAGCTGGACCAGAATTTTTAACTTGCCGATATTCAGATTTAATGATTTATGTCAATGGAGCAGTAGTTTACTGGTGAGGCTGACGTTGACTGAGTGACAAATCATTCACTAGGGTTCCATTCTCGCCGTGGTCCGCCCTTCCCATATAGCATGACCTTCAAAGGAATGGGGA
TGGAGTGATTCCCAGGTAGTTTTAGCAGAATAGGTACCCCAAACTCAAACTACTTGGAATCGGCAATGACTCAGCAAACCTAAAGTGGGCCAACTTGGCAAAACTTCGGCACATCAGGGAACAGGGAATATCAACTTTGCGAAACTTGGAAAACTTATTGACCAGAACAGAGAATGCCTATTCTGACTAGGAGTTTTGAC
TTGGCTCTCCAGCTCAGAGTGTGGAGACAACCCAGGACTACTTGCAGAGTTAGAAAGAGTTACGTTTCTCCGATACACTTCAGACCTGGCACTGTAGTTGAAACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGT
TGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTTGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGA
CTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGAC
CACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCG
AGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCAAAATGACCAATGCCGGAATTGGATAAAA
TGTTGTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAAATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGC
AAATTGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTTTTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACA
ATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCTGTAAGAGAAGAGGGTTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTT
AAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGGAGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCC
CAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACACAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTT
GTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAGAAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACA
ATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAGTTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGT
ATTTGCCGGGATATTCTTCGAGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGC
AGTGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTA
GGCGGTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGTCTTTGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCT
GGCTCTGAGCTACCATACGATCTTATGGTTGAAAGGACACAAGGCTACTCTGGTTCAGATATTCGTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGC
TCTTAAAATCACAAGGCCATCAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGATGAGTATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGT
TCTTTCATTCATTTGAAGCCCTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAATAATTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTG
GGTTTATATCCCATATCTATTGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATATATCTTCGGACTTGAAAGTGTACATTACATTGTTATCTTCATGACGCCGGAATGAGTTTAGTCTTGATTCCTCAAAGCTGAACACAGTAATATTTTCAAGTGGCAAGTCAACTTACGCTTCATCATAAGTTTCCAAGTT
TTGACATTGACATAATTTTTGCCACTATTAGAGTTTGAACACATATAGCACGAAGAGAACTGGCTGATCAAATGTGCAAGGTGGTTTATACAGAATTAATAGCAGATTCAAAATGAGAGGTGGCTCCAAGAGTCAAAATTAGAGCAAACGAATATAAAGTACAATAGAACATAAGCCGAATCACTGTACAATCACTAATT
ATTCAATAAAGAGAATTGTTCAAAAAAATGTAATGAGTTGCACGTTGCCTCCGTCTCATCCTTTTTGTTCATGTTGCTGTCATATCCTGAATTTAAACCAATGGGATTGGAATGT
>TRINITY_DN47615_c2_g1_i6 from sample A7 / Example unspliced isoform:GAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttttatt
ctttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagtgtgatagtggcat
ctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagAAAATGACCAATGCCGGAATTGGATAAAATGTTGTCCCCAGTATGCATTGGAAAACTTTTACAGTAATGGCTATAA
ATTAATGTTGAAAAACAGCGTTTTTCTGGAACTTATTGGAAAAATAAGTCCTGAGTGAACATTGTATCATTCCACCATGTACAAGCTTCATTACTCTTCCGTCCAGTGAAGGCCCTGTGAGAGGTTGAACTACTTTTTATGCTTGTGAAGGGCAAATTGAACCTGTTAGAGGTTGTTGATTTTGGCTGAAATGTATTTTT
TTTTGAGTTGTGATCCAAAAAGGCATCGGAGGAATGACAAACTTTGGGATATTAGGTCTCAATGAGTGTGATAGATTAGAAGGAGACTACAATTTCACCCCTTGAAAGTGCAGGTTGCATATGGTTATGGAGGAGATTGATCTTTAGGGCACAATCTAGGGAAAAGTAACAGTTCTTTCCAATCCTCAACAATTATCTCT
GTAAGAGAAGAGGGTTGCTAAAGCAAAAGGGATTCTTTTGGATTTTATAAAGGACCACCTGATTCCTCACAGGCAAGGGAAATCAACAAAGGAAATGTTTGATGCATTGACAAGTTTGTATCAAAGTGTCAATATTGTCAGGAAGATGCTCTTAAAGGACAGATTCACACAAACATGCATGAGTAATTCAGACATTGTGG
AGGGCTACCTTATGAAGATCAACGATCTTAGAAAACAACTCTTTGCTATTGATATGAAGATCAAAGATGAGGAATTAGTGCCTTTTGTACTTTATGGTTTCTCCCTTATTTGGGAAGCCTTTGTTCAGGGTGTATGTGCTCTGGAAAACCTCCCAACTTATGAGAAACCTTGGGGCATCATTGTCTAAGAAGAAACAACA
CAAGAAACAATGCCAGGTCGAATAGAAGAGGACCAAGAGTTTACGCTTATCAGGAAGTGAGGAAAGCTGGAAAGAAAAGAGGACCCACAAGGGTAAAGAAGGAGGAGACATCTTCTTCAGATCATGGTACTAAGGATCAGAGTCATGTGACTTGTTACAAGTGTCACAAGAAAGGACACTTTACTAATCAATGTTCCAAG
AAGAGGAAAGGTAAGCAACAACATCAGTAGTTTGCATGGAGCGCAAATGCTTCAGCTGGAGTGGATGAATCGGCAACCAAGCTTGAAATTGCCTTCATTAGGTTTCATGCCTTTCTACCAATACCACTTCTGGTGTTGGTTGGTATGTGGACAATGGAATGTCATGGCATATGACTTTCAGCAGGAAAAATTTCAGCAAG
TTTCAAGAACAAGATGGCCATACAAGTGGAGTTGGGTGATGTTGCTACATACTTGGTGGCTGGAATCAACACCATCTCCTTCAAGATGCCTTTAGGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGT
Intron 5 GTAAGGCTTA ... CTTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.29 | 134 | 43 | 3 |
| A2 | 22.08 | 187 | 53 | 3 |
| A3 | 17.49 | 151 | 32 | 1 |
| A4 | 27.73 | 86 | 33 | 3 |
| A5 | 21 | 79 | 21 | 0 |
| A6 | 23.62 | 152 | 47 | 4 |
| A7 | 16.16 | 301 | 58 | 0 |
| A8 | 16.56 | 267 | 53 | 0 |
| A9 | 22.75 | 309 | 91 | 0 |
| A10 | 25.38 | 294 | 100 | 0 |
>TRINITY_DN128021_c4_g1_i3 from sample A1 / Example spliced isoformGGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGA
CGAGGCACTTATCAAGTCTGTATTTCTCCAGTGTAGCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGAGAAAGAGAGCTGAAGAATCCAACATAACAGAAAACAATGAGAACCCAGCTGATAT
CTTGACTGGAGCCAGTATCGATGATAGCATTAAAGGACGTGGTGGTGGTAACAGTAATTCGACAGCTGGGTTTGCATTTAAGGCCATACCTGTGGCCTTCTCTATAAAAAGGAAGACTCCCGCAAATTCAAGCAAAACTGTTGAAACAACCGTGGACAGACCCAAGGAAGAAACAGTTTCAAATTTGGGAGTTCAGGACA
GTACCGTACATACGGGCTTATCCTCACTTTGTGCAGCTTATGACAGTGACTCCAGTGACTAGGAAGCAGCATATTTCTGGCCACCGAAAATGTAAGACAAAATAGGGTGTATTGACAAATAAAATTCCTCATCTTTACAGTGTATTATGTTGTACCTCCAGAATTGGAAATTTTTCTTTTGCTCAGTTTTTGGTGAGCGC
ATTGCAGCCACATATCAATTCAAAATTTTGGTACAGAAAATACATATAAAAGTGCAATGTCGATGTTTCTTGTTAATAAACTATTTATTAGTATATGGAGGTTCAATCTGCAGACTTGGGCGAAGCTCATTTCAGTGCTTGCAATAAACTGTCAGGAAATACATACTGA
>TRINITY_DN128021_c4_g1_i7 from sample A1 / Example unspliced isoform:GGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGgtaaggcttacctggttctgacttgatttatgtgtttgtgtactaatacaactctttgacatgcaactttcccttcaatttgttgtaac
ttttattgttgccttgccctgggttcctaaattccaagtttcagtgatgcagtattaatgaacagattttgtttctgaaattaaatgttacactggagtcataagattgaatgacgtggaaataacaaacagatttgatgtctgaaattaaatgttaagaattataagatcaatgaaactgaaaattatcaatggaactg
aaactttgcttttctaatttgtgactattttcccggttcttcagtactcttcaactctagcatgctgtcatgtagattaatttatctgtcttttctggagatttaaagttctgccaaacttgtttcagGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGTACAC
AATTTTTTATTTACTATTGAACCAACACTTATATTTAAGACATTTTAAGGGGGGAAATTGCAAGGCGTCCTTCCTCTGCTGACCTTTGATTGCTATCAATTGGCAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGTTGGTATCTGGAATACTTGCATGGGTTCTGTAGGCTAGA
TGACAGTCTATGCTTTTGTTAGTATTTTCTCCCTTATTTTTGCAGCCTTTGAATGTACAATCTTCACTTAATTTGCCTTCAACTGACATGTAGTGTAGCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGG
TTGAAGGTAAGACATAGAAATTTTCCACATTGCCTTGAAAACTGTGTTAAAATATTCGGACACTAGGGTAATTTAAAATCCATTATTTCAAGTTCCCAAAGTTTTTAGTTGTTAACAGTTGTCTGATTCTGGCCTCAAAAATACTAAGGTAACAGTAATACAAGACCCATGGCAAATTAAGTGCTGTGAAAACTACTTTT
GACTTTCAAAATTGACAAATCCTGGATAAGATATCCTTAAAATGTCAACCAATTAGCTTTCTACTTTTTGGATGTTAATAACTTCCAACACTTTCTATGAAGGAAGATCAGCAAGAATTGGATCCCAGAATTACGCCAGGCATGTGGATCTCAAGGTGGCTTATAATTCCACCCCGTTAACTTTATTAAATTAAGAATTA
ATAATAATAATAATAATAATAACAATAACAACAACAACACTACAATTAACTTAATTCTTAAATATAAATATTGACTGAGGCCGACCTTAATTATTATTATTATTTTTAAGTTAATGACACATCAATACAAATCTCTAGTTGTATTCTCTCTTCACAAATCATTTCCGATGACGCACCACACTGGTTTGGTCCAAAACGTC
AAGTTAAAAATGAAAGCAGTCTATTTGGAAGATTCCGTAAATATTATGTTGTAGATGTTGATTTACATGGTTGCATGGGAACTAATCCCAGGGTTGGTGAACTAGATGCCAACGTTTTCCCATTCTGTGGAACTTGGGAGCTGGCTTAAAATGTTCTAGTTTGGGTGGGAGCGGCTCTAGGATTGGCTGGAATCTTTCAG
GAGCTTCGGAGATGCTGCTCAATAGGCCAGGAACTTTTACATGTTCTTCGCCATGTTGCCTACACAAAGGGAAACAAACAGGTGCATTTTTGGTACTGCTTTAGTGCCACATCAGCACTTTTGGAATCCATAAACGACCAGAAAGGCATGAAAAAACATAAATAATATTTCAATAATAAAAAATAAAGCAAAAACCCTAC
CTTACTTTATAAACTCATACCCATGGAATAACACCTTTCAGCATTTGCATTTGTCGTTCATGCTGTGAGCATGCGAGTCTTGTAGTAACTTGGAGATCAACTTGGAGCTTATTGGAGAGTTGAGGAGTGCCATTGGGCAGCAATACAAGTATTAGATTGCTGTGGAGGGGCATTCTAGTATTATTCTCCAGGTATTTTCA
GATTTCTTACGGCCAGGAAACTCTTGTTGCAGTTTGTGAAGAAAAAAAAACTAAATGCCAATAAAAAATAGTGAGGATTTTGAGGAATGGGAATACACTGAGTGAAACCATGTTTTTGCGCCGAGAGGCGATCTACAGCCCAGTATGAGGGAGATCTTGTAACATGTGTGAGTTTGTC
Intron 6 GTTGGTATCT ... AGTGTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.65 | 131.4 | 18.6 | 25.2 |
| A2 | 9.53 | 169.8 | 20.7 | 18.6 |
| A3 | 10.54 | 137.7 | 29.7 | 16.6 |
| A4 | 13.01 | 81.3 | 12.4 | 12.5 |
| A5 | 7.9 | 70.1 | 23.9 | 6 |
| A6 | 2.2 | 186.4 | 10.5 | 4.3 |
| A7 | 1.65 | 280.3 | 20.5 | 4.8 |
| A8 | 2.47 | 275.4 | 22 | 7.1 |
| A9 | 1.54 | 275.6 | 16.2 | 4.4 |
| A10 | 1.27 | 291 | 18.9 | 3.8 |
>TRINITY_DN128021_c4_g1_i1 from sample A1 / Example spliced isoformGGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGA
CGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGGTAAGACATAGAAATTTTCCACATTGCCTTGAAAACTGTGTTAAAATATTCGGACACTAGGGTA
ATTTAAAATCCATTATTTCAAGTTCCCAAAGTTTTTAGTTGTTAACAGTTGTCTGATTCTGGCCTCAAAAATACTAAGGTAACAGTAATACAAGACCCATGGCAAATTAAGTGCTGTGAAAACTACTTTTGACTTTCAAAATTGACAAATCCTGGATAAGATATCCTTAAAATGTCAACCAATTAGCTTTCTACTTTTTG
GATGTTAATAACTTCCAACACTTTCTATGAAGGAAGATCAGCAAGAATTGGATCCCAGAATTACGCCAGGCATGTGGATCTCAAGGTGGCTTATAATTCCACCCCGTTAACTTTATTAAATTAAGAATTAATAATAATAATAATAATAATAACAATAACAACAACAACACTACAATTAACTTAATTCTTAAATATAAATA
TTGACTGAGGCCGACCTTAATTATTATTATTATTTTTAAGTTAATGACACATCAATACAAATCTCTAGTTGTATTCTCTCTTCACAAATCATTTCCGATGACGCACCACACTGGTTTGGTCCAAAACGTCAAGTTAAAAATGAAAGCAGTCTATTTGGAAGATTCCGTAAATATTATGTTGTAGATGTTGATTTACATGG
TTGCATGGGAACTAATCCCAGGGTTGGTGAACTAGATGCCAACGTTTTCCCATTCTGTGGAACTTGGGAGCTGGCTTAAAATGTTCTAGTTTGGGTGGGAGCGGCTCTAGGATTGGCTGGAATCTTTCAGGAGCTTCGGAGATGCTGCTCAATAGGCCAGGAACTTTTACATGTTCTTCGCCATGTTGCCTACACAAAGG
GAAACAAACAGGTGCATTTTTGGTACTGCTTTAGTGCCACATCAGCACTTTTGGAATCCATAAACGACCAGAAAGGCATGAAAAAACATAAATAATATTTCAATAATAAAAAATAAAGCAAAAACCCTACCTTACTTTATAAACTCATACCCATGGAATAACACCTTTCAGCATTTGCATTTGTCGTTCATGCTGTGAGC
ATGCGAGTCTTGTAGTAACTTGGAGATCAACTTGGAGCTTATTGGAGAGTTGAGGAGTGCCATTGGGCAGCAATACAAGTATTAGATTGCTGTGGAGGGGCATTCTAGTATTATTCTCCAGGTATTTTCAGATTTCTTACGGCCAGGAAACTCTTGTTGCAGTTTGTGAAGAAAAAAAAACTAAATGCCAATAAAAAATA
GTGAGGATTTTGAGGAATGGGAATACACTGAGTGAAACCATGTTTTTGCGCCGAGAGGCGATCTACAGCCCAGTATGAGGGAGATCTTGTAACATGTGTGAGTTTGTC
>TRINITY_DN128021_c4_g1_i7 from sample A1 / Example unspliced isoform:GGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGTAAGGCTTACCTGGTTCTGACTTGATTTATGTGTTTGTGTACTAATACAACTCTTTGACATGCAACTTTCCCTTCAATTTGTTGTAAC
TTTTATTGTTGCCTTGCCCTGGGTTCCTAAATTCCAAGTTTCAGTGATGCAGTATTAATGAACAGATTTTGTTTCTGAAATTAAATGTTACACTGGAGTCATAAGATTGAATGACGTGGAAATAACAAACAGATTTGATGTCTGAAATTAAATGTTAAGAATTATAAGATCAATGAAACTGAAAATTATCAATGGAACTG
AAACTTTGCTTTTCTAATTTGTGACTATTTTCCCGGTTCTTCAGTACTCTTCAACTCTAGCATGCTGTCATGTAGATTAATTTATCTGTCTTTTCTGGAGATTTAAAGTTCTGCCAAACTTGTTTCAGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGTACAC
AATTTTTTATTTACTATTGAACCAACACTTATATTTAAGACATTTTAAGGGGGGAAATTGCAAGGCGTCCTTCCTCTGCTGACCTTTGATTGCTATCAATTGGCAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGgttggtatctggaatacttgcatgggttctgtaggctaga
tgacagtctatgcttttgttagtattttctcccttatttttgcagcctttgaatgtacaatcttcacttaatttgccttcaactgacatgtagtgtagcagGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGG
TTGAAGGTAAGACATAGAAATTTTCCACATTGCCTTGAAAACTGTGTTAAAATATTCGGACACTAGGGTAATTTAAAATCCATTATTTCAAGTTCCCAAAGTTTTTAGTTGTTAACAGTTGTCTGATTCTGGCCTCAAAAATACTAAGGTAACAGTAATACAAGACCCATGGCAAATTAAGTGCTGTGAAAACTACTTTT
GACTTTCAAAATTGACAAATCCTGGATAAGATATCCTTAAAATGTCAACCAATTAGCTTTCTACTTTTTGGATGTTAATAACTTCCAACACTTTCTATGAAGGAAGATCAGCAAGAATTGGATCCCAGAATTACGCCAGGCATGTGGATCTCAAGGTGGCTTATAATTCCACCCCGTTAACTTTATTAAATTAAGAATTA
ATAATAATAATAATAATAATAACAATAACAACAACAACACTACAATTAACTTAATTCTTAAATATAAATATTGACTGAGGCCGACCTTAATTATTATTATTATTTTTAAGTTAATGACACATCAATACAAATCTCTAGTTGTATTCTCTCTTCACAAATCATTTCCGATGACGCACCACACTGGTTTGGTCCAAAACGTC
AAGTTAAAAATGAAAGCAGTCTATTTGGAAGATTCCGTAAATATTATGTTGTAGATGTTGATTTACATGGTTGCATGGGAACTAATCCCAGGGTTGGTGAACTAGATGCCAACGTTTTCCCATTCTGTGGAACTTGGGAGCTGGCTTAAAATGTTCTAGTTTGGGTGGGAGCGGCTCTAGGATTGGCTGGAATCTTTCAG
GAGCTTCGGAGATGCTGCTCAATAGGCCAGGAACTTTTACATGTTCTTCGCCATGTTGCCTACACAAAGGGAAACAAACAGGTGCATTTTTGGTACTGCTTTAGTGCCACATCAGCACTTTTGGAATCCATAAACGACCAGAAAGGCATGAAAAAACATAAATAATATTTCAATAATAAAAAATAAAGCAAAAACCCTAC
CTTACTTTATAAACTCATACCCATGGAATAACACCTTTCAGCATTTGCATTTGTCGTTCATGCTGTGAGCATGCGAGTCTTGTAGTAACTTGGAGATCAACTTGGAGCTTATTGGAGAGTTGAGGAGTGCCATTGGGCAGCAATACAAGTATTAGATTGCTGTGGAGGGGCATTCTAGTATTATTCTCCAGGTATTTTCA
GATTTCTTACGGCCAGGAAACTCTTGTTGCAGTTTGTGAAGAAAAAAAAACTAAATGCCAATAAAAAATAGTGAGGATTTTGAGGAATGGGAATACACTGAGTGAAACCATGTTTTTGCGCCGAGAGGCGATCTACAGCCCAGTATGAGGGAGATCTTGTAACATGTGTGAGTTTGTC
Intron 7 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.75 | 171.3 | 93.5 | 39.8 |
| A2 | 28.37 | 168.8 | 66 | 28.5 |
| A3 | 32.73 | 206 | 99 | 27.8 |
| A4 | 31.01 | 150.5 | 66.5 | 27.3 |
| A5 | 34.78 | 85.8 | 45 | 12.3 |
| A6 | 27.6 | 435 | 163 | 78.3 |
| A7 | 28.8 | 512.8 | 205 | 84.8 |
| A8 | 27.86 | 347 | 131.5 | 100.5 |
| A9 | 30.93 | 469.8 | 208.5 | 74.3 |
| A10 | 31.09 | 410.3 | 183 | 82 |
>TRINITY_DN47615_c2_g1_i10 from sample A7 / Example spliced isoformGAAATTTGACCCTGTGACATGATGGAAACAAAACCCACCCAAGCCAAGTCAACTGATCTCGGCTTAGAAGGTGCTGAGAAATGGATTTGATAAAGCAGAAAATGTCTAAGTCCAAGGAGGAAAGGTTTAAACACAATGGAGAGGAGGGGAACAAATTACATCCGGACATAATAGTAGGGGGAAGATGAGAATTAGCTTTC
GGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATACGGTCGGCCTTGATGCCTTCAGGCTTTCACTTCGGTTTATGCTTTCTATAATTTTTGAAATAACTGCTTGATATAAATTCTGCGACTTTTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCG
ACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGCGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAAT
ACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGGGCATATTTGCTTCGAGTGATAGGTGGAAT
ATCGGTTGCTTATGACGGGGTTTGATTAAGCTGGACCAGAATTTTTAACTTGCCGATATTCAGATTTAATGATTTATGTCAATGGAGCAGTAGTTTACTGGTGAGGCTGACGTTGACTGAGTGACAAATCATTCACTAGGGTTCCATTCTCGCCGTGGTCCGCCCTTCCCATATAGCATGACCTTCAAAGGAATGGGGAT
GGAGTGATTCCCAGGTAGTTTTAGCAGAATAGGTACCCCAAACTCAAACTACTTGGAATCGGCAATGACTCAGCAAACCTAAAGTGGGCCAACTTGGCAAAACTTCGGCACATCAGGGAACAGGGAATATCAACTTTGCGAAACTTGGAAAACTTATTGACCAGAACAGAGAATGCCTATTCTGACTAGGAGTTTTGACT
TGGCTCTCCAGCTCAGAGTGTGGAGACAACCCAGGACTACTTGCAGAGTTAGAAAGAGTTACGTTTCTCCGATACACTTCAGACCTGGCACTGTAGTTGAAACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTT
GTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTTGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGAC
TGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACC
ACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCGA
GTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAAAGGAGTGTTGCCAGCTTTTGAGTC
TGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGT
>TRINITY_DN47615_c2_g1_i8 from sample A7 / Example unspliced isoform:GAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttaactt
ttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagtgtgatagtggcatctgtttttattata
aatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcattggaaaacttttacagtaatggctataaattaatgttgaaaa
acagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggttgttgattttggctgaaatgtatttttttttgagttgtgat
ccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaatctagggaaaagtaacagttctttccaatcctcaacaattatctctgtaagagaagaggg
ttgctaaagcaaaagggattcttttggattttataaaggaccacctgattcctcacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaaaggacagattcacacaaacatgcatgagtaattcagacattgtggagggctaccttatg
aagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaagatgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctcccaacttatgagaaaccttggggcatcattgtctaagaagaaacaacacaagaaacaatgcc
aggtcgaatagaagaggaccaagagtttacgcttatcaggaagtgaggaaagctggaaagaaaagaggacccacaagggtaaagaaggaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgttacaagtgtcacaagaaaggacactttactaatcaatgttccaagaagaggaaaggtaa
gcaacaacatcagtagtttgcatggagcgcaaatgcttcagctggagtggatgaatcggcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaatggaatgtcatggcatatgactttcagcaggaaaaatttcagcaagtttcaagaacaaga
tggccatacaagtggagttgggtgatgttgctacatacttggtggctggaatcaacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGT
Intron 8 GTATATTTCA ... TCTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.42 | 220.9 | 35 | 32 |
| A2 | 13.54 | 241 | 46 | 29 |
| A3 | 12.24 | 287.2 | 38 | 41 |
| A4 | 13.34 | 226.9 | 34 | 35 |
| A5 | 11.97 | 134.5 | 12 | 24 |
| A6 | 9.07 | 392.1 | 29 | 48 |
| A7 | 8.6 | 551.6 | 47 | 56 |
| A8 | 9.75 | 300.8 | 24 | 40 |
| A9 | 8.16 | 540.4 | 47 | 48 |
| A10 | 8.18 | 472 | 30 | 53 |
>TRINITY_DN107018_c0_g1_i13 from sample A5 / Example spliced isoformCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAATTGAGTGCTGTAAGAGC
CTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAA
AGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTC
GTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGAT
GGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGT
CTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATG
ACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCGAGTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGT
CTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAAAGGAGTGTTGTCAGCTTTTGAGTCTGTTGAAATGCGTAACTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTCCTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGA
ATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAAGACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGG
CGTGGTGATTCAGAAAAACTTGTAAAAGTTCTTTTTGAGGTTGCAAGACATCATGCACCATCAACAATATTTTTGGACGAAATTGATGCTATCATTAGTCACCGTGGCGAAGGCCGCAGTGAGCATGAAGCAAGTAGGCGGTTAAAGACTGAGCTACTTATCCAGATGGATGGTTTAATGCAAACAAATGATCTCGTCTT
TGTCCTGGCGGCGACTAATTTGCCGTGGGAACTGGATGGTGCCATGCTTCGACGTCTTGAAAAGCGTATTCTTGTGCCTCTTCCTGAGCCTGAAGCACGTCAAGCCATGTTTGAAGACCTTTTGCCTTTGCAACCTGGCTCTGAGCTACCATACGATCTTATGGTTGAAAGGACACAAGGCTATTCTGGTTCAGATATTC
GTTTAGTTTGCAAAGAGGCTGCCATGCGGCCACTGAGGCGATTAATGGCCATGCTTGAAGAAAATGATGCAGCTGAATTACCGGAAGAAGACCTGCCCAGCATTGGTCCTGTCACAAGTGATGATATTATTGTAGCTCTTAAAATCACAAGGCCATCAGCACATCTTAATGAAAATCGTTACCAAAAGTTTAACGATGAG
TATGGCAGCCAAGCAACATTTTGATGTTCCTTGCATCGAGTTGTCTTGTATACATAAAATGAAAGGATGGAATTTGTGGCGATTTTGAAAAGTGAGACGTTTTGCTAGTGATCATTGATTGTACAGGGGGTATTGTTCTTTCATTCATTTGAAGCCCTATATCTATCTCTTCAAGCGCATAATTATATTGGCATCAATAA
TTAGTAATTAGGTCATGCTGATTTTAATGCTTTTAATTTGAGGCATTAGTTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATTTGATTAAAATTTTGGAGAATAAATACTTTGAGCTGGGTTTATATCCCATATCTATTGAAGCCTGTGATTTGCAATTAGTATGTTACATTAGAAATATAT
CTTCGGACTTGAAA
>TRINITY_DN107018_c0_g1_i1 from sample A5 / Example unspliced isoform:CAGGGTTTCACTTTGGTTTATGCTTTCTATAATTTTTGAAATAACTGCTTGATATAAATTCTGCGACTTTTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCA
GAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAA
GTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGT
TGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGA
CTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGAC
CACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGgtatatttcattccttttgccttcttttagcaatcgtattctctactgatcgcattaaattccaatatcag
caccagtcttcaaataagttcaaagcatctgctgaaatccaaatcaaaggatcgcaggatcgattctcgcggcttcctgttacagccttttttggttgcgtatttttatcttatgcagGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGTCTAATGGACATTCTCTAGTAGAAAACG
GTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAAAGGAGTGTTGTCAGCTTTTGAGTCTGTTGAAATG
CGTAACTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGTACTGATGTGCAGTGGAACAACATCAAGGGTCTAGAGAATGCAAAACGACTTTTGAAAGAAGCAGTCGTCATGCCTATTAAGTACCCTAAGTATTTTAGAGGCCTTCTATCGCCATGGAAAGGGATTCTTCTATTTGGCCCTCCTGGAACGGGAAA
GACAATGCTTGCTAAGGCAGTGGCTACTGAGTGCAAAACAACATTCTTCAACATTTCTGCGTCATCCATTGTTAGCAAGTGGCGTGGT
Intron 9 GTAGGTCAGC ... TTGGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.39 | 236.4 | 113 | 18 |
| A2 | 34.03 | 231.6 | 119 | 10 |
| A3 | 26.55 | 269.6 | 97 | 15 |
| A4 | 34.6 | 227.4 | 120 | 7 |
| A5 | 29.09 | 114.8 | 47 | 11 |
| A6 | 24.62 | 537 | 174 | 21 |
| A7 | 28.35 | 749.8 | 295 | 17 |
| A8 | 25.77 | 406.2 | 140 | 13 |
| A9 | 28.04 | 636.6 | 247 | 20 |
| A10 | 28.99 | 605.4 | 246 | 14 |
>TRINITY_DN107018_c0_g1_i12 from sample A5 / Example spliced isoformCAGGGTTTCACTTTGGTTTATGCTTTCTATAATTTTTGAAATAACTGCTTGATATAAATTCTGCGACTTTTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCA
GAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAA
GTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGT
TGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGA
CTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGAC
CACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGTATATTTCATTCCTTTTGCCTTCTTTTAGCAATCGTATTCTCTACTGATCGCATTAAATTCCAATATCAG
CACCAGTCTTCAAATAAGTTCAAAGCATCTGCTGAAATCCAAATCAAAGGATCGCAGGATCGATTCTCGCGGCTTCCTGTTACAGCCTTTTTTGGTTGCGTATTTTTATCTTATGCAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGTCTAATGGACATTCTCTAGTAGAAAACG
GTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGTGAGAGGCTTTGTCGTTTTTTTAATTTTTATTCTTTAAT
TTAACTTTTCTTTTTGCTCTTTCCAGCTTTTTCTTTGCAAAAAATTCTTCCAAGGGGTGACATCATTACGGATCTATATTTTCTCTGCCTGCTCTTCCTTTGATATTTATGATTTTCATGGTGTTTTGACATAATAAATCAATTTCCCAG
>TRINITY_DN107018_c0_g1_i18 from sample A5 / Example unspliced isoform:CGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAATTGAGTGCTGTAAGAGC
CTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAA
AGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTC
GTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGAT
GGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGT
CTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATG
ACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGTATATTTCATTCCTTTTGCCTTCTTTTAGCAATCGTATTCTCTACTGATCGCATTAAATTCCAATATCAGCACCAGTCTTCAAATAAGTTCAAAGCATCTGCTGAAATCCAAATCAAAGGATCGCAGGATCGATTCTCGCGGCTTCCTGTTACAGCCTTTTTT
GGTTGCGTATTTTTATCTTATGCAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGTCTAATGGACATTCTCTAGTAGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGT
TTTTATGCCAGgtaggtcagcggactttgtaattccgtaatcgttgtcactttgattagaaataaaaagggaaatttataggatgtcgagtagatcgttggattcttcagtttgtgaagctcacaatttctttctgattaaaagcacagaaaactaatatacagaaaataataatataggtgtaactttagcaacctcaa
acacgcattagagagaaaattgcagactaattcttcaaactatgctgtaaacttctgaagtggaatgtgctgtattggattcagGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGTGAGAGGCTTTGTCGTTTTTTTAATTTTTATTCTTTAATTTAACTTTTCTTTTTGCTCT
TTCCAGCTTTTTCTTTGCAAAAAATTCTTCCAAGGGGTGACATCATTACGGATCTATATTTTCTCTGCCTGCTCTTCCTTTGATATTTATGATTTTCATGGTGTTTTGACATAATAAATCAATTTCCCAG
Intron 10 GTGAGAGGCT ... ATGCCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.84 | 166 | 94.7 | 35.7 |
| A2 | 28.92 | 164.7 | 66 | 25.7 |
| A3 | 33.62 | 201 | 100.3 | 25.3 |
| A4 | 32.16 | 146.3 | 68 | 24.7 |
| A5 | 35.5 | 83.3 | 45 | 11 |
| A6 | 28.23 | 423 | 163 | 70.7 |
| A7 | 29.35 | 501 | 205.3 | 77.3 |
| A8 | 28.55 | 337 | 131.7 | 92.3 |
| A9 | 31.47 | 460 | 209 | 67.3 |
| A10 | 31.69 | 400.7 | 183.3 | 75 |
>TRINITY_DN47615_c2_g1_i10 from sample A7 / Example spliced isoformGAAATTTGACCCTGTGACATGATGGAAACAAAACCCACCCAAGCCAAGTCAACTGATCTCGGCTTAGAAGGTGCTGAGAAATGGATTTGATAAAGCAGAAAATGTCTAAGTCCAAGGAGGAAAGGTTTAAACACAATGGAGAGGAGGGGAACAAATTACATCCGGACATAATAGTAGGGGGAAGATGAGAATTAGCTTTC
GGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATACGGTCGGCCTTGATGCCTTCAGGCTTTCACTTCGGTTTATGCTTTCTATAATTTTTGAAATAACTGCTTGATATAAATTCTGCGACTTTTTATAATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCG
ACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGCGGTTTTGCAGGCCGTCCCTCATTTTGAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAAT
ACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCGTTGGCGAGGGCATATTTGCTTCGAGTGATAGGTGGAAT
ATCGGTTGCTTATGACGGGGTTTGATTAAGCTGGACCAGAATTTTTAACTTGCCGATATTCAGATTTAATGATTTATGTCAATGGAGCAGTAGTTTACTGGTGAGGCTGACGTTGACTGAGTGACAAATCATTCACTAGGGTTCCATTCTCGCCGTGGTCCGCCCTTCCCATATAGCATGACCTTCAAAGGAATGGGGAT
GGAGTGATTCCCAGGTAGTTTTAGCAGAATAGGTACCCCAAACTCAAACTACTTGGAATCGGCAATGACTCAGCAAACCTAAAGTGGGCCAACTTGGCAAAACTTCGGCACATCAGGGAACAGGGAATATCAACTTTGCGAAACTTGGAAAACTTATTGACCAGAACAGAGAATGCCTATTCTGACTAGGAGTTTTGACT
TGGCTCTCCAGCTCAGAGTGTGGAGACAACCCAGGACTACTTGCAGAGTTAGAAAGAGTTACGTTTCTCCGATACACTTCAGACCTGGCACTGTAGTTGAAACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTT
GTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTTGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGAC
TGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACC
ACGGGTTGAAGTCTGGCGGCACGAGTTCGAATATGTGGGGGAGCTCGTCGTCATCGTAATACGGGATCCCCTGAACATTTCCCACAGCCATGACGGACGAGCCAGCCATTACCAGATGGAAATTTGAGGATTTTGAGGAAGTGTATGATGCGAAATTCGGAGTTAAACGGGAAAATGCGGGGGCTAATGGACATTCTCGA
GTGGAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCGCAAAAAGGAGTGTTGCCAGCTTTTGAGTC
TGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGT
>TRINITY_DN47615_c2_g1_i6 from sample A7 / Example unspliced isoform:GAAAACGGTCAGGAGGGTTTTGATGAACGTACGAGTGTGGCAGTCAATGGAAATGGCAGCAATACAAGGAACTCTGCGGGTTTGGCCGTCTATGAACAGTTTTTATGCCAGGAAAACAGCGGAACAGAGTTTGCTGGTGTATCTGTAGGGAGATCGGCAGCGAAACCgtgagaggctttgtcgtttttttaatttttatt
ctttaatttaacttttctttttgctctttccagctttttctttgcaaaaaattcttccaaggggtgacatcattacggatctatattttctctgcctgctcttcctttgatatttatgattttcatggtgttttgacataataaatcaatttcccagtgttgtcgaattttttttcccagcgttagtgtgatagtggcat
ctgtttttattataaatatggtggttacatgaaaatgtgcatatggttatatgcaatggtttttctactttttattttgatattttgtttagttattgacattcaccttttcgctgttggtcagaaaatgaccaatgccggaattggataaaatgttgtccccagtatgcattggaaaacttttacagtaatggctataa
attaatgttgaaaaacagcgtttttctggaacttattggaaaaataagtcctgagtgaacattgtatcattccaccatgtacaagcttcattactcttccgtccagtgaaggccctgtgagaggttgaactactttttatgcttgtgaagggcaaattgaacctgttagaggttgttgattttggctgaaatgtattttt
ttttgagttgtgatccaaaaaggcatcggaggaatgacaaactttgggatattaggtctcaatgagtgtgatagattagaaggagactacaatttcaccccttgaaagtgcaggttgcatatggttatggaggagattgatctttagggcacaatctagggaaaagtaacagttctttccaatcctcaacaattatctct
gtaagagaagagggttgctaaagcaaaagggattcttttggattttataaaggaccacctgattcctcacaggcaagggaaatcaacaaaggaaatgtttgatgcattgacaagtttgtatcaaagtgtcaatattgtcaggaagatgctcttaaaggacagattcacacaaacatgcatgagtaattcagacattgtgg
agggctaccttatgaagatcaacgatcttagaaaacaactctttgctattgatatgaagatcaaagatgaggaattagtgccttttgtactttatggtttctcccttatttgggaagcctttgttcagggtgtatgtgctctggaaaacctcccaacttatgagaaaccttggggcatcattgtctaagaagaaacaaca
caagaaacaatgccaggtcgaatagaagaggaccaagagtttacgcttatcaggaagtgaggaaagctggaaagaaaagaggacccacaagggtaaagaaggaggagacatcttcttcagatcatggtactaaggatcagagtcatgtgacttgttacaagtgtcacaagaaaggacactttactaatcaatgttccaag
aagaggaaaggtaagcaacaacatcagtagtttgcatggagcgcaaatgcttcagctggagtggatgaatcggcaaccaagcttgaaattgccttcattaggtttcatgcctttctaccaataccacttctggtgttggttggtatgtggacaatggaatgtcatggcatatgactttcagcaggaaaaatttcagcaag
tttcaagaacaagatggccatacaagtggagttgggtgatgttgctacatacttggtggctggaatcaacaccatctccttcaagatgcctttagGCAAAAAGGAGTGTTGCCAGCTTTTGAGTCTGTTGAAATGCGTAGCTTGGCAGAAAGTATTTGCCGGGATATTCTTCGAGGGAGT
Intron 11 GTTGGTATCT ... TGACATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.36 | 127.6 | 14.9 | 25.9 |
| A2 | 9.6 | 156.3 | 14.9 | 17.1 |
| A3 | 12.28 | 133 | 23.6 | 19.1 |
| A4 | 11.91 | 74.6 | 9.9 | 10.3 |
| A5 | 9.46 | 68 | 21.1 | 7.1 |
| A6 | 1.51 | 174.6 | 6.6 | 2.7 |
| A7 | 2.11 | 275 | 12 | 6 |
| A8 | 3.45 | 263 | 14 | 9.6 |
| A9 | 2 | 263.1 | 10.3 | 5.4 |
| A10 | 1.57 | 275.6 | 12.3 | 4.4 |
>TRINITY_DN128021_c4_g1_i3 from sample A1 / Example spliced isoformGGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGA
CGAGGCACTTATCAAGTCTGTATTTCTCCAGTGTAGCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGAGAAAGAGAGCTGAAGAATCCAACATAACAGAAAACAATGAGAACCCAGCTGATAT
CTTGACTGGAGCCAGTATCGATGATAGCATTAAAGGACGTGGTGGTGGTAACAGTAATTCGACAGCTGGGTTTGCATTTAAGGCCATACCTGTGGCCTTCTCTATAAAAAGGAAGACTCCCGCAAATTCAAGCAAAACTGTTGAAACAACCGTGGACAGACCCAAGGAAGAAACAGTTTCAAATTTGGGAGTTCAGGACA
GTACCGTACATACGGGCTTATCCTCACTTTGTGCAGCTTATGACAGTGACTCCAGTGACTAGGAAGCAGCATATTTCTGGCCACCGAAAATGTAAGACAAAATAGGGTGTATTGACAAATAAAATTCCTCATCTTTACAGTGTATTATGTTGTACCTCCAGAATTGGAAATTTTTCTTTTGCTCAGTTTTTGGTGAGCGC
ATTGCAGCCACATATCAATTCAAAATTTTGGTACAGAAAATACATATAAAAGTGCAATGTCGATGTTTCTTGTTAATAAACTATTTATTAGTATATGGAGGTTCAATCTGCAGACTTGGGCGAAGCTCATTTCAGTGCTTGCAATAAACTGTCAGGAAATACATACTGA
>TRINITY_DN128021_c4_g1_i7 from sample A1 / Example unspliced isoform:GGGGAACAAATTACATGCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATAA
TTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTTG
AAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATT
CTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAG
AAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGTAAGGCTTACCTGGTTCTGACTTGATTTATGTGTTTGTGTACTAATACAACTCTTTGACATGCAACTTTCCCTTCAATTTGTTGTAAC
TTTTATTGTTGCCTTGCCCTGGGTTCCTAAATTCCAAGTTTCAGTGATGCAGTATTAATGAACAGATTTTGTTTCTGAAATTAAATGTTACACTGGAGTCATAAGATTGAATGACGTGGAAATAACAAACAGATTTGATGTCTGAAATTAAATGTTAAGAATTATAAGATCAATGAAACTGAAAATTATCAATGGAACTG
AAACTTTGCTTTTCTAATTTGTGACTATTTTCCCGGTTCTTCAGTACTCTTCAACTCTAGCATGCTGTCATGTAGATTAATTTATCTGTCTTTTCTGGAGATTTAAAGTTCTGCCAAACTTGTTTCAGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGTACAC
AATTTTTTATTTACTATTGAACCAACACTTATATTTAAGACATTTTAAGGGGGGAAATTGCAAGGCGTCCTTCCTCTGCTGACCTTTGATTGCTATCAATTGGCAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGgttggtatctggaatacttgcatgggttctgtaggctaga
tgacagtctatgcttttgttagtattttctcccttatttttgcagcctttgaatgtacaatcttcacttaatttgccttcaactgacatgtagTGTAGCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGG
TTGAAGGTAAGACATAGAAATTTTCCACATTGCCTTGAAAACTGTGTTAAAATATTCGGACACTAGGGTAATTTAAAATCCATTATTTCAAGTTCCCAAAGTTTTTAGTTGTTAACAGTTGTCTGATTCTGGCCTCAAAAATACTAAGGTAACAGTAATACAAGACCCATGGCAAATTAAGTGCTGTGAAAACTACTTTT
GACTTTCAAAATTGACAAATCCTGGATAAGATATCCTTAAAATGTCAACCAATTAGCTTTCTACTTTTTGGATGTTAATAACTTCCAACACTTTCTATGAAGGAAGATCAGCAAGAATTGGATCCCAGAATTACGCCAGGCATGTGGATCTCAAGGTGGCTTATAATTCCACCCCGTTAACTTTATTAAATTAAGAATTA
ATAATAATAATAATAATAATAACAATAACAACAACAACACTACAATTAACTTAATTCTTAAATATAAATATTGACTGAGGCCGACCTTAATTATTATTATTATTTTTAAGTTAATGACACATCAATACAAATCTCTAGTTGTATTCTCTCTTCACAAATCATTTCCGATGACGCACCACACTGGTTTGGTCCAAAACGTC
AAGTTAAAAATGAAAGCAGTCTATTTGGAAGATTCCGTAAATATTATGTTGTAGATGTTGATTTACATGGTTGCATGGGAACTAATCCCAGGGTTGGTGAACTAGATGCCAACGTTTTCCCATTCTGTGGAACTTGGGAGCTGGCTTAAAATGTTCTAGTTTGGGTGGGAGCGGCTCTAGGATTGGCTGGAATCTTTCAG
GAGCTTCGGAGATGCTGCTCAATAGGCCAGGAACTTTTACATGTTCTTCGCCATGTTGCCTACACAAAGGGAAACAAACAGGTGCATTTTTGGTACTGCTTTAGTGCCACATCAGCACTTTTGGAATCCATAAACGACCAGAAAGGCATGAAAAAACATAAATAATATTTCAATAATAAAAAATAAAGCAAAAACCCTAC
CTTACTTTATAAACTCATACCCATGGAATAACACCTTTCAGCATTTGCATTTGTCGTTCATGCTGTGAGCATGCGAGTCTTGTAGTAACTTGGAGATCAACTTGGAGCTTATTGGAGAGTTGAGGAGTGCCATTGGGCAGCAATACAAGTATTAGATTGCTGTGGAGGGGCATTCTAGTATTATTCTCCAGGTATTTTCA
GATTTCTTACGGCCAGGAAACTCTTGTTGCAGTTTGTGAAGAAAAAAAAACTAAATGCCAATAAAAAATAGTGAGGATTTTGAGGAATGGGAATACACTGAGTGAAACCATGTTTTTGCGCCGAGAGGCGATCTACAGCCCAGTATGAGGGAGATCTTGTAACATGTGTGAGTTTGTC
Intron 12 GTAATCGAGA ... TATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.51 | 77 | 18 | 32 |
| A2 | 22.53 | 104.9 | 24 | 37 |
| A3 | 18 | 108.1 | 23.5 | 24 |
| A4 | 19.79 | 77 | 26 | 12 |
| A5 | 22.35 | 33 | 7 | 12 |
| A6 | 18.47 | 64 | 9 | 20 |
| A7 | 21.71 | 130.3 | 34.3 | 38 |
| A8 | 21.42 | 132.5 | 29.3 | 43 |
| A9 | 21.56 | 146 | 44.3 | 36 |
| A10 | 20.19 | 127 | 21.3 | 43 |
>TRINITY_DN107931_c3_g1_i8 from sample A4 / Example spliced isoformAGCGGAACAAATTACATGCGGACATAATAGTAGGGGGAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATA
ATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTT
GAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAAT
TCTCGCAAAGAGGACGTCGTTGGCGAGGGCATATTTGCTTCGAGTGATAGGTGGAATATCGGTTGCTTATGACGGGGTTTGATTAAGCTGGACCAGAATTTTTAACTTGCCGATATTCAGATTTAATGATTTATGTCAATGGAGCAGTAGTTTACTGGTGAGGCTGACGTTGACTGAGTGACAAATCATTCACTAGGGTT
CCATTCTCGCCGTGGTCCGCCCTTCCCATATAGCATGACCTTCAAAGGAATGGGGATGGAGTGATTCCCAGGTAGTTTTAGCAGAATAGGTACCCCAAACTCAAACTACTTGGAATCGGCAATGACTCAGCAAACCTAAAGTGGGCCAACTTGGCAAAACTTCGGCACATCAGGGAACAGGGAATATCAACTTTGCGAAA
CTTGGAAAACTTATTGACCAGAACAGAGAATGCCTATTCTGACTAGGAGTTTTGACTTGGCTCTCCAGCTCAGAGTGTGGAGACAACCCAGGACTACTTGCAGAGTTAGAAAGAGTTACGTTTCTCCGATACACTTCAGACCTGGCACTGTAGTTGAAACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGT
ACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGA
AATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGTGTAGCAGGATTCTGATAACTTTGTACGGCGATTAGA
GGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGGTAAGACATAGAAATTTTCCACATTGCCTTGAAAACTGTGTTAAAATATTCGGACACTAGGGTAATTTAAAATCCATTATTTCAAGTTCCCAAAGTTTTTAGTTGTTAACAGTTGTCTGATTCT
GGCCTCAAAAATACTAAGGTAACAGTAATACAAGACCCATGGCAAATTAAGTGCTGTGAAAACTACTTTTGACTTTCAAAATTGACAAATCCTGGATAAGATATCCTTAAAATGTCAACCAATTAGCTTTCTACTTTTTGGATGTTAATAACTTCCAACACTTTCTATGAAGGAAGATCAGCAAGAATTGGATCCCAGAA
TTACGCCAGGCATGTGGATCTCAAGGTGGCTTATAATTCCACCCCGTTAACTTTATTAAATTAAGAATTAATAATAATAATAATAATAATAACAACAACAACACTACAATTAACTTAATTCTTAAATATAAATATTGACTGAGGCCGACCTTAATTATTATTATTATTTTTTAGTTAATGACACATCAATACAAATCTCT
AGTTGTATTCTCTCTTCACAAATCATTTCCGATGACGCACCACACTGGTTTGGTCCAAAACGTCAAGTTAAAAATGAAAGCAGTCTATTTGGAAGATTCCGTAAATATTATGTTGTAGATGTTGATTTACATGGTTGCATGGGAACTAATCCCAGGGTTGGTGAACTAGATGCCAACGTTTTCCCATTCTGTGGAACTTG
GGAGCTGGCTTAAAATGTTCTAGTTTGGGTGGGAGCGGCTCTAGGATTGGCTGGAATCTTTCAGGAGCTTCGGAGATGCTGCTCAATAGGCCAGGAACTTTTACATGTTCTTCGCCATGTTGCCTACACAAAGGGAAACAAACAGGTGCATTTTTGGTACTGCTTTAGTGCCACATCAGCACTTTTGGAATCCATAAACG
ACCAGAAAGGCATGAAAAAACATAAATAATATTTCAATAATAAAAAATAAAGCAAAAACCCTACCTTACTTTATAAACTCATACCCATGGAATAACACCTTTCAGCATTTGCATTTGTCGTTCATGCTGTGAGCATGCGAGTCTTGTAGTAACTTGGAGATCAACTTGGAGCTTATTGGAGAGTTGAGGAGTGCCATTGG
GCAGCAATACAAGTATTAGATTGCTGTGGAGGGGCATTCTAGTATTATTCTCCAGGTATTTTCAGATTTCTTACGGCCAGGAAAC
>TRINITY_DN107931_c3_g1_i7 from sample A4 / Example unspliced isoform:AGCGGAACAAATTACATGCGGACATAATAGTAGGGGGAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATCCGGTGGGCCTTGATGCCTCCAGGGTTTCACTCCGGTTTATGCTTTCTATAATTTTTTAAATAACTGCTTGAAATAAAATTCTGCGCCTTCTTATA
ATTGAGTGCTGTAAGAGCCTACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGAGGTTTTGCAGGCCGTCCCTCATTTT
GAAGAAATAAGAACAGAAAGGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAAT
TCTCGCAAAGAGGACGTCGTTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCGTGGCGTGCTGAGGATGAGgtaatcgagaaacatctaaatta
atttaattattcttgttcacctgggattatgttttcgtggaatcatattgagatgaagcataaggtattaaaacttatatattgcagGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATGGGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCT
TGATGAGATGAAATCTATGAGGG
Intron 13 GTTGGTATCT ... TGTAGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.63 | 134 | 8 | 8 |
| A2 | 1.73 | 170 | 4 | 2 |
| A3 | 6.12 | 138 | 13 | 5 |
| A4 | 5.33 | 80 | 5 | 4 |
| A5 | 12.5 | 70 | 16 | 4 |
| A6 | 0 | 187 | 0 | 0 |
| A7 | 0 | 283 | 0 | 0 |
| A8 | 0 | 269 | 0 | 0 |
| A9 | 0 | 284 | 0 | 0 |
| A10 | 0 | 294 | 0 | 0 |
>TRINITY_DN107018_c0_g1_i9 from sample A5 / Example spliced isoformCGGACATGATAGTAGGGGAAAGATGAGAATTAGCTTTCGGGAAGGGATGGGAAGACTTATAAATCCTGTAACTTTTCTCAATTTATACGGTCGGCCTTGATGCCTTCAGGCTTTCACTTCGGTTTATGCTTTCTATAATTTTTGAAATAACTGCTTGATATAAATTCTGCGACTTTTTATAATTGAGTGCTGTAAGAGCC
TACCGGGGTTCAAATCCAAGTTCAACCCCAACAGAGCGACGGACAATTGCGTCTCCTGTATTGATTTCACATACTCTGCTTCTGCAAAGCTCCAGAATCAGGTCCAGAGTCCAGACCGTTCGAGTCTTAGTCCTTCAAGGTCTCCATCCCATCTGCGGTTTTGCAGGCTGTCCCTCATTTTGAAGAAATAAGAACAGAAA
GGCTGCAGCAATGGGAGAAAGGAAGGTACTTAACAAATACTATCCTCCGGATTTCGATCCGTCTAAAATACCCAGAAGACGACAACCTAAAAACCAGCAGATCAAAGTGCGGATGATGCTTCCCATGAGCATCCGCTGCGGTACATGCGGGAATTACATCTACAAGGGTACCAAGTTCAATTCTCGCAAAGAGGACGTCG
TTGGCGAGACATATTTAGGTATCCAAATATTCAGATTCTACTTCAAATGTACCAAATGTTCAGCAGAGTTGACTATGAAGACAGATCCTCAGAATTCTGATTATGTTGTAGAGTCTGGTGCATCTCGTAATTTTGAACCATGGCGTGCTGAGGATGAGGAAGCAGATAAGGAAAAGAAGAAGAAAGATGCTGAGGAGATG
GGTGATGCAATGAAGTCATTAGAAAATCGTACTATAGATTCCAAGAGAGAAATGGATATACTCGCTGCCCTTGATGAGATGAAATCTATGAGGGCAAGGCAATCGACTGTTAGCACAGATGAAATGCTGGAGGCCCTTCGACGTACAGCGGAAGTAAAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTC
TGTATTTCTCCAGCAGGATTCTGATAACTTTGTATGGCGATTAGAGGATGATGAGGATGATTATGAAAGTGCATACCAAAAGAGGCCTGAGTCCAGAGAAAATAATGACCACGGGTTGAAGAGAAAGAGAGCTGAAGAATCCAACATAACAGAAAACAATGAGAACCCAGCTGATATCTTGACTGGAGCCAGTATTGATG
ATAGCATTAAAGGACGTGGTGGTGGTAACAGTAATTCGACAGCTGGGTTTGCATTTAAGGCCATACCTGTGGCCTTCTCTATAAAAAGGAAGACTCCCGCAAATTCAAGCAAAACTGTTGAAACAACCGTGGACAGACCCAAGGAAGAAACAGTTTCAAATTTGGGAGTTCAGGACAGTACCGTACATACGGGCTTATCC
TCACTTTGTGCAGCTTATGACAGTGACTCCAGTGACTAGGAAGCAGCATATTTCTGGCCACCGAAAATGTAAGACAAAATAGGGTGTATTGACAAATAAAATTCCTCATCTTTACAGTGTATTATGTTGTACCTCCAGAATTGGAAATTTTTCTTTTGCTCAGTTTTTGGTGAGCGCATTGCAGCCACATATCAATTCAA
AAATTTGGTACAGAAAATACATATAAAAGTGCAATGTCGATGTTTCTTGCT
>TRINITY_DN107018_c0_g1_i8 from sample A5 / Example unspliced isoform:GGGGGGGAAATGCAATGCGTCCTTCCTCTGCTGACCTTTGATTGCTATCAATTGGCAGGAAAAGGATTTGGAAGAAGAAGACGAGGCACTTATCAAGTCTGTATTTCTCCAGgttggtatctggaatacttgcatgggttctgtaggctagatgacagtctatgcttttgttagtattttctcccttatttttgcagcct
ttgaatgtacaatcttcacttaatttgccttcaactgacatgtagtgtagCAGGATTCTGATAACT