NA ----> NA

Intron 1 GTATTTTGTT ... TTCTGTTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	0
A2	85.71	1	8	4
A3	100	0	1	1
A4	-1	0	0	0
A5	-1	0	0	0
A6	57.65	18	23	26
A7	86.67	1	7	6
A8	38.1	13	8	8
A9	45	11	8	10
A10	100	0	5	5

>TRINITY_DN31777_c0_g1_i1 from sample A6 / Example spliced isoform

CAGCTTTTCTATGAAGAATAAAATTGTAATAGAGTGAGTGTAATCATTGGAGAAAGTTGGAACCGTCCATTGTAATCCAAAATCTAAAATGAAGTCTCTTCCTCTGATTGCTTATCCCACCAACAATTTACCTTCTGCAGTCCTGCAACCTTCAGTTTCGTCACTCACATCGGTTAAATTCAATTCGATTTCATTGCTTT
CCCTGCCAAAACCATCTAAACGCAACAGATTCCACCTTCATTTTCACCCCACCAGGGCTCTAAATGATGAACAACAACAACAACAGCAAACACCCCCGGAGGGTCCATCTCCAGCAGGGTTGGAATCCTTGGAAGTGAGGGCAGGATTAGGAAGACGAGCTCGAAGAAAGAGAGACCAGGTATCGGGCCCTAATCAAGTT
CCTGAGCCCAAGAAGAAGAAGGACTGGGATTCCATGACACTTCAGGAGAAGCTGGTGGAGATTTACGTTGGGGAAAAAGGTTCGTGGGTCCTTCACTGGGTCTCTATCAGCTCGAGAGCAGCCTGCTAGAACCCACCAAAACTTTCGGTGGATTCTGACCATTCCTTCTTTATCTCATAATGTAATGTAATACCACTGTA
TACATCTTGCAAAAATATTCTTCTTCTGAGAAGTGTTATCATGATTTTATTGAAACTGTACTGTGATTACCACTGTAAAATTGAATCTCTGTTTTTTCCCCAAAAGCTTGTAATCAGATTGCAATTTTAGTAAC

>TRINITY_DN31777_c0_g1_i2 from sample A6 / Example unspliced isoform:

CAGCTTTTCTATGAAGAATAAAATTGTAATAGAGTGAGTGTAATCATTGGAGAAAGTTGGAACCGTCCATTGTAATCCAAAATCTAAAATGAAGTCTCTTCCTCTGATTGCTTATCCCACCAACAATTTACCTTCTGCAGTCCTGCAACCTTCAGTTTCGTCACTCACATCGGTTAAATTCAATTCGATTTCATTGCTTT
CCCTGCCAAAACCATCTAAACGCAACAGATTCCACCTTCATTTTCACCCCACCAGGGCTCTAAATGATGAACAACAACAACAACAGCAAACACCCCCGGAGGGTCCATCTCCAGCAGGGTTGGAATCCTTGGAAGTGAGGGCAGGATTAGGAAGACGAGCTCGAAGAAAGAGAGACCAGGTATCGGGCCCTAATCAAGTT
CCTGAGCCCAAGAAGAAGAAGGACTGGGATTCCATGACACTTCAGGAGAAGCTGGTGGAGATTTACGTTGGGGAAAAAGgtattttgttctggctaaataaattggcgtatgcttccatatttattttgattgggggttgggttctgtttagGTTCGTGGGTCCTTCACTGGGTCTCTATCAGCTCGAGAGCAGCCTGCT
AGAACCCACCAAAACTTTCGGTGGATTCTGACCATTCCTTCTTTATCTCATAATGTAATGTAATACCACTGTATACATCTTGCAAAAATATTCTTCTTCTGAGAAGTGTTATCATGATTTTATTGAAACTGTACTGTGATTACCACTGTAAAATTGAATCTCTGTTTTTTCCCCAAAAGCTTGTAATCAGATTGCAATTT
TAGTAAC