sp|Q9LPL4|SKP2A_ARATH ----> F-box protein SKP2A
Intron 1 GTATGAGTCC ... ATGAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 4 | 2 | 9 |
| A2 | 66.67 | 1 | 0 | 2 |
| A3 | 0 | 7 | 0 | 0 |
| A4 | 100 | 0 | 0 | 2 |
| A5 | 37.09 | 8.5 | 1 | 5 |
| A6 | 0 | 2.5 | 0 | 0 |
| A7 | 33.98 | 19.5 | 0 | 10 |
| A8 | 31.28 | 13.5 | 0 | 6 |
| A9 | 16.52 | 15.5 | 1 | 3 |
| A10 | 20 | 16 | 1 | 4 |
>TRINITY_DN43428_c0_g1_i2 from sample A8 / Example spliced isoformTAAAGACAGGCCTAAGCTTCTGTTCGATATTGTTTGTACCTTGACGGATATGGAGTATGTTGTCTTTCATGCCACTATAGATTCTCCGGGCCCAGAAACTTATCAGAAGCAGAGAGGCAGCATGTGATTCAGTGTTTGGAGGCTGCGATTAAAAGAAGAGCATTAGAGGGCATGAGACTGGAACTATGCACCAAGGATTG
AGTTGGGCCAGCTACAATTTGTCCTTGCAGAGAGAGTTAAGGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGGTTTCGATTTCAGATTAAAATGCCTCACGCATTCCCATGTTATGCTCATATCACATGCCTTCGGAGCTTGGTCTCCATTCCTTCATCCACCATTCACCTTTCTTGTCTTCTTTCATTTGTTCT
TCATTCTAACTGTTTTGTTCCAAGTTTCCCATTGCTCTGTTCTATACCCGTTCTACCCTGTAAACCCAATTCTTCCCACGTTTCCCATTTGGTCATGCTTCATATTTTACTTATTTCCCACATTTTTCTTTTTCCTTTTCCTTCTCCTGTATGTTCTTGATACCCTTCCATCTCTTGTTTGTTTTGAGCTGCGACAACAC
TAAAATGGGAGAAACTATGATGTCCTTGTTCAGGTTTTCTTTCCATTTTTTAATCTTGATGTAAGCTGTTTTTCTTATTGATTTCTGTGAATTCAGGTTTTGACTCTGGTGTTTTCTGTTGTAGGTGTTAATAATTCAGCTTATGTGTATAAAGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGA
AAACATTAAAACAATGATATTTATAAAGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTTAGAAGTAACAAAGCAAGAATGGAACTTTTCCCTGCAGAATCACACTAGTTTAACGAATATGGAGAAGAAGGA
AAATGATGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGATGACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAAATTTATCTATCATGACACAACAAGGTCGTTTAGAATTAGGAGCTTTCTC
TTGAACGCATCATTGGGAGCATTACGATGGTCTTTTGTTGGGACCTTCGTAGGAACAAGTTATTGAGTGAGGAATGATATGCCTTTTCAATGATATGCCCATATGCCAATAGCTACATGGAATCTTTGCAATCAACAATGAAATTATTGCAACGACGAATAGAACTTGTTCTATTGAGTTGGTTATTTTTTCAATTTTTT
ATCTCAATGATGAGACCATGAAATTATGTAGCATTGAAACTCTTCGTGCATTAGAAACAACCCATTTAGCACTCATTTACTCCAATTAAGTTGTCTCTTGAGATTGAAAACATAGATATAGCTTAAGTGCCATGAATAACTTTTAGTCTTAAATAACTTGTAATTGTTTAGTTTAAATGAGTGCAAATACAAGGATTAAT
GTAAGGAACTGC
>TRINITY_DN43428_c0_g1_i8 from sample A8 / Example unspliced isoform:GTGTGATTCAGTGTTTGGAGGCTGCGATTAAAAGAAGAGCATTAGAGgtatgagtccaatgagtgcattcaaatttatgaagtccttaagacttggggttcccagggtattcacatttgttccttactttatttttattgaagttgatgatggttttatgaattcagGGCATGAGACTGGAACTATGCACCAAGGATTGA
GTTGGGCCAGCTACAATTTGTCCTTGCAGAGAGAGTTAAGGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGGTTTCGATTTCAGATTAAAATGCCTCACGCATTCCCATGTTATGCTCATATCACATGCCTTCGGAGCTTGGTCTCCATTCCTTCATCCACCATTCACCTTTCTTGTCTTCTTTCATTTGTTCTT
CATTCTAACTGTTTTGTTCCAAGTTTCCCATTGCTCTGTTCTATACCCGTTCTACCCTGTAAACCCAATTCTTCCCACGTTTCCCATTTGGTCATGCTTCATATTTTACTTATTTCCCACATTTTTCTTTTTCCTTTTCCTTCTCCTGTATGTTCTTGATACCCTTCCATCTCTTGTTTGTTTTGAGCTGCGACAACACT
AAAATGGGAGAAACTATGATGTCCTTGTTCAGGTTTTCTTTCCATTTTTTAATCTTGATGTAAGCTGTTTTTCTTATTGATTTCTGTGAATTCAGGTTTTGACTCTGGTGTTTTCTGTTGTAGGTGTTAATAATTCAGCTTATGTGTATAAAGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAA
AACATTAAAACAATGATATTTATAAAGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTTAGAAGTAACAAAGCAAGAATGGAACTTTTCCCTGCAGAATCACACTAGTTTAACGAATATGGAGAAGAAGGAA
AATGATGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGATGACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAAATTTATCTATCATGACACAACAAGGTCGTTTAGAATTAGGAGCTTTCTCT
TGAACGCATCATTGGGAGCATTACGATGGTCTTTTGTTGGGACCTTCGTAGGAACAAGTTATTGAGTGAGGAATGATATGCCTTTTCAATGATATGCCCATATGCCAATAGCTACATGGAATCTTTGCAATCAACAATGAAATTATTGCAACGACGAATAGAACTTGTTCTATTGAGTTGGTTATTTTTTCAATTTTTTA
TCTCAATGATGAGACCATGAAATTATGTAGCATTGAAACTCTTCGTGCATTAGAAACAACCCATTTAGCACTCATTTACTCCAATTAAGTTGTCTCTTGAGATTGAAAACATAGATATAGCTTAAGTGCCATGAATAACTTTTAGTCTTAAATAACTTGTAATTGTTTAGTTTAAATGAGTGCAAATACAAGGATTAATG
TAAGGAACTGC
Intron 2 GTTTCGATTT ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.03 | 11 | 8 | 1 |
| A2 | 28.57 | 5 | 4 | 0 |
| A3 | 20 | 8 | 2 | 2 |
| A4 | 16.67 | 5 | 2 | 0 |
| A5 | 47.37 | 5 | 8 | 1 |
| A6 | 42.86 | 8 | 3 | 9 |
| A7 | 34 | 33 | 25 | 9 |
| A8 | 44.62 | 18 | 20 | 9 |
| A9 | 44.68 | 13 | 17 | 4 |
| A10 | 41.54 | 19 | 20 | 7 |
>TRINITY_DN126775_c0_g1_i19 from sample A1 / Example spliced isoformGTGATTCAGTGTTTGGAGGCTGCGATTAAAAGAAGAGCATTAGAGGGCATGAGATTGGAACTATGCACCAAGGATTGAGTTGGGCCAGATACAATCTGTCCTTGCAGAGAGAGTTAAGGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGGTGTTAATAATTAATCTTATGTGTATAAGGTAAACTTCACATATTA
GCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTTAGAAGTAACAAAGCAAGAATGGAACTTTGCCCTGCAGAATCACACTAGTTTAACGAATATGGAGAAGAAGGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCA
TGGAGCTCCTTATGCGCATACTTAAGCTTGTTGACGACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAACTTTCTTTATCATGGTGTAAGTCGAACATGAGCAAATTACTTCTGTCAATTGCTCCTAAATTCACTCGTTTGCAGTCCCTTAATCTACGCCAG
AACCAACATCAACTCGATGATCAAGCAGTGGAAATGGTTGCAAAGTACTGTCATGATTTACGTGCTCTAGACCTTTCGAACAGTACCCAGCTGACAGACAGATCTATTAATGCTCTGGCGCTTGGTTGTAATCAACTTGAAAAACTTAATATAAGTGGATGTTCAAAAGTTACTGATTCGGCACTGATATTTCTGGCATC
GAAGTGCAACAGATTGAGACATCTAAATCTCTGTGGATGTTGTCGAGCTGCGTCTGACAAGGCTTTGCTGGCTCTGGCACAAAATTGCTGCGGCTTGCAATCTTTGAATTTGGGTTGGTGCGAGGAGGTGACTGATTTGGGTGTGACAGGTTTGGCACAATGGTGCCCTGAGATGAGGGCAGTGGATTTGTGTGGTTGTG
TATTAATAACAG
>TRINITY_DN126775_c0_g1_i20 from sample A1 / Example unspliced isoform:GTGATTCAGTGTTTGGAGGCTGCGATTAAAAGAAGAGCATTAGAGGGCATGAGATTGGAACTATGCACCAAGGATTGAGTTGGGCCAGATACAATCTGTCCTTGCAGAGAGAGTTAAGGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGgtttcgatttcagattaaaatgcctcacgcattcccatgttatgct
catatcacatgccttcggagcttggtctccattccttcatccaccattcacctttcttgtcttctttcatttgttcttcattctaactgttttgttccaagtttcccattgctctgttctatacccgttctaccctgtaaacccaattcttcccacgtttcccatttggtcatgcttcatattttacttatttcccacat
ttttctttttccttttccttctcctgtatgttcttgatacccttccatctcttgtttgttttgagctgcgacaacactaaaatgggagaaactatgatgtccttgttcaggttttctttccattttgtaatcttgatgtaagctgtttttcttattgatttctgtgaattcaggttttgactctggtgttttttgttgca
gGTGTTAATAATTAATCTTATGTGTATAAGGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAAC
Intron 3 GTGAGAATCA ... ACATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.53 | 20.5 | 21.3 | 11.5 |
| A2 | 41.79 | 24.2 | 18.3 | 7 |
| A3 | 34.56 | 22.5 | 12.7 | 2.5 |
| A4 | 48.18 | 12.3 | 12 | 4.2 |
| A5 | 34.86 | 21.7 | 11.7 | 6.8 |
| A6 | 31.08 | 34.7 | 16.7 | 1.5 |
| A7 | 12.43 | 86.8 | 13 | 2.5 |
| A8 | 17.61 | 51 | 11.5 | 1.7 |
| A9 | 18.67 | 32.7 | 8 | 3.5 |
| A10 | 18.15 | 59.2 | 14 | 2.5 |
>TRINITY_DN126775_c0_g1_i18 from sample A1 / Example spliced isoformGAGAAATCAGATAGGCGAGAGCAACATCACTCGTCTTCTTCACAACGTGTTTTTCATTCGGTCTGGTCTCTGGTCTTAATAATTCAGCTTATTGTGTATAAAGTAAACTTCACATATCAGCTCGCCTGGCTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGA
CTTGGAAGTACCAAAGCAAGAATGGAACTTTGCCCTGCAGAATCACACTAGTTTAACGAATATGGAGAAGAAGGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGATGACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAG
AATCATTCTGCATCGGTGTTCAAGAAATTTATCTATCATGACACAACAAGGTCGTTTAGAATTAGGAGCTTTCTCTTGAACGCATCATTGGGAGCATTACGATGGTCTTCTATTGGGACCTTCGTATGAACAAGTTATTGAGTGAGGAAT
>TRINITY_DN126775_c0_g1_i14 from sample A1 / Example unspliced isoform:GACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAGAATCATTCTGCATCGGTGTTCAAGAAATTTATCTATCATGgtgagaatcaaggttcccctctttcttgtatttgatttaagggttatttttgcaacaggatgcatactggctcattgtctagtgatacatctgtaggttttacatgtttaggca
ttcaaaattagtactgttgttccttcgtatgtcattttgtccaccattttcttcagtgatacaaatcttcatccttttgcacatttgcagACACAACAAGGTCGTTCAGAATTAGGAGCTTTCTCTTGAACGCATCATTGGGAGCATTACGATGG
Intron 4 GTAAACTTCA ... TTCCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.82 | 7 | 20 | 39 |
| A2 | 64.52 | 11 | 10 | 30 |
| A3 | 69.81 | 8 | 16 | 21 |
| A4 | 89.74 | 2 | 10 | 25 |
| A5 | 77.27 | 5 | 11 | 23 |
| A6 | 91.67 | 2 | 21 | 23 |
| A7 | 87.34 | 10 | 60 | 78 |
| A8 | 78.43 | 11 | 27 | 53 |
| A9 | 75.89 | 17 | 27 | 80 |
| A10 | 76.79 | 13 | 27 | 59 |
>TRINITY_DN43428_c0_g1_i7 from sample A8 / Example spliced isoformTAAAGACAGGCCTAAGCTTCTGTTCGATATTGTTTGTACCTTGACGGATATGGAGTATGTTGTCTTTCATGCCACTATAGATTCTCAGGGCCCATAAACTTATCAGGAGTACTACATCAGGCACACTGATGGATGTACCGTGAATTCAGAAGCAGAGAGGCAGCGTGTGATTCAGTGTTTGGAGGCTGCGATTAAAAGAA
GAGCATTAGAGGGCATGAGATTGGAACTATGCACCAAGGATTGAGTTGGGCCAGATACAATCTGTCCTTGCAGAGAGAGTTAAGGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGGTGTTAATAATTAATCTTATGTGTATAAGAATCACACTAGTTTAACGAATATGGAGAAGAAGGAAAATGATGATGGTAAT
GAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGATGACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAAATTTATCTATCATGACACAACAAGGTCGTTTAGAATTAGGAGCTTTCTCTTGAACGCATCATTGG
GAGCATTACGATGGTCTTTTGTTGGGACCTTCGTAGGAACAAGTTATTGAGTGAGGAATGATATGCCTTTTCAATGATATGCCCATATGCCAATAGCTACATGGAATCTTTGCAATCAACAATGAAATTATTGCAAC
>TRINITY_DN43428_c0_g1_i5 from sample A8 / Example unspliced isoform:TAAAGACAGGCCTAAGCTTCTGTTCGATATTGTTTGTACCTTGACGGATATGGAGTATGTTGTCTTTCATGCCACTATAGATTCTCAGGGCCCATAAACTTATCAGGAGTACTACATCAGGCACACTGATGGATGTACCGTGAATTCAGAAGCAGAGAGGCAGCGTGTGATTCAGTGTTTGGAGGCTGCGATTAAAAGAA
GAGCATTAGAGGGCATGAGATTGGAACTATGCACCAAGGATTGAGTTGGGCCAGATACAATCTGTCCTTGCAGAGAGAGTTAAGGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGGTGTTAATAATTAATCTTATGTGTATAAGgtaaacttcacatattagctcgcctggttgaccataccctagaaagaaaac
attaaaaccatgatcttttcaccaccatcaacattggatgcaatggacttagaagtaacaaagcaagaatggaacttttccctgcagAATCACACTAGTTTAACGAATATGGAGAAGAAGGAAAATGATGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGA
TGACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAAATTTATCTATCATGACACAACAAGGTCGTTTAGAATTAGGAGCTTTCTCTTGAACGCATCATTGGGAGCATTACGATGGTCTTTTGTTGGGACCTTCGTAGGAACAAGTTATTGAGTGAGGAATGAT
ATGCCTTTTCAATGATATGCCCATATGCCAATAGCTACATGGAATCTTTGCAATCAACAATGAAATTATTGCAACGACGAATAGAACTTGTTCTATTGAGTTGGTTATTTTTTCAATTTTTTATCTCAATGATGAGACCATGAAATTATGTAGCATTGAAACTCTTCGTGCATTAGAAACAACCCATTTAGCACTCATTT
ACTCCAATTAAGTTGTCTCTTGAGATTGAAAACATAGATATAGCTTAAGTGCCATGAATAACTTTTAGTCTTAAATAACTTGTAATTGTTTAGTTTAAATGAGTGCAAATACAAGGATTAATGTAAGGAACTGC
Intron 5 GTATGGGAAT ... TACACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.64 | 27 | 8 | 17 |
| A2 | 28.57 | 40 | 7.4 | 16 |
| A3 | 15.94 | 58 | 12 | 11 |
| A4 | 28.76 | 41 | 6 | 16.6 |
| A5 | 13.95 | 37 | 6.1 | 6 |
| A6 | 22.39 | 104 | 2 | 30 |
| A7 | 22.46 | 145 | 12 | 42 |
| A8 | 20.91 | 97 | 11.8 | 25.7 |
| A9 | 18.69 | 87 | 2.4 | 20 |
| A10 | 25 | 159 | 4 | 53 |
>TRINITY_DN126775_c0_g1_i1 from sample A1 / Example spliced isoformCCTTGCAGAGAGAGTTAAGGGAGTAGTTTCAGGTCACACCCATAATTGTTAGGTTAAAAAAGAGTTGCGGTATTTATCTCCGTTCTTCTCTTTTGTGACACAAGAGTACTACATCAGGCACACTGATGGATGTACCGTGAATTCAGAAGCAGAGAGGCAGCATGTGATTCAGTGTTTGGAGGCTGCCATTAAAAGAAGAG
CATTAGAGGTATGAGTCCAATGAGTGCATTCAAATTTATGAAGTCCTTAAGACTTGGGGTTCCCAGGGTATTCACATTTGTTCCTTACTTTATTTTTATTGAAGTTGATGATGGTTTTATGAATTCAGGGCATGAGACTGGAACTATGCACCAAGGATTGAGTTGGGCCAGCTACAATTTGTCCTTGCAGAGAGAGTTAA
GGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGGTGTTAATAATTAATCTTATGTGTATAAGGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTTAGAAGTAACAAAGCAAGAATGGAACTTTGCCCT
GCAGAATCACACTAGTTTAACGAATATGGAGAAGAAGGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGACGACTGTACTATAATTATTGGATCTGGTGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAACTTTCTTTAT
CATGGTGTAAGTCGAACATGAGCAAATTACTTCTGTCAATTGCTCCTAAATTCACTCGTTTGCAGTCCCTTAATCTACGCCAGAACCAACATCAACTCGATGATCAAGCAGTGGAAATGGTTGCAAAGTACTGTCATGATTTACGTGCTCTAGACCTTTCGAACAGTACCCAGCTGACAGACAGATCTATTAATGCTCTG
GCGCTTGGTTGTAATCAACTTGAAAAACTTAATATAAGTGGATGTTCAAAAGTTACTGATTCGGCACTGATATTTCTGGCATCGAAGTGCAACAGATTGAGACATCTAAATCTCTGTGGATGTTGTCGAGCTGCGTCTGACAAGGCTTTGCTGGCTCTGGCACAAAATTGCTGCGGCTTGCAATCTTTGAATTTGGGTTG
GTGCGAGGAGGTGACTGATTTGGGTGTGACAGGTTTGGCACAATGGTGCCCTGAGATGAGGGCAGTGGATTTGTGTGGTTGTGTATTAATAACAGATAAAAGCGTTGTTGCATTGGCTGAAAACTGCCATCGCTTAAGATCATTGGGATTGTACTTCTGCCAAAATATCACTGACACGGCTATGTACTCTTTAGCAAACA
GCAGCATATACGGGGCAGGGAAGGAAAACTCCAAACACAAGAGCAGTAATATTAGGTACAACACTGAGCCAGTATCCACTCAAAGCAGTCAAAGATGCAAGCGAAACAATGGAGGTAGACAGAGTTGCGGTATCAGTGAACGCAATACAGCTGTTAGTCGTGATTACATGGAATCTGTTTTGAGTGACCAAGAGGGGTAT
GGCCTAGTGCAGTTAAATATTAGTCAATGCACATTTTTATCTGCTCCTGCTGTTCAAGCTGTTTGTGATGCTTTCCCAGCACTGCATACTTGTCCGGAGAAGCATTCTCTCATCATAAGTGGCTGCCTAAACCTTACCTCAGTGCATTGTGTATGCGCAATTGAAGCCCTGAGAGAACGAAGAAGCAGAGCTGCAGTTTC
TGATCATTCTGCAGGGATTCTAAATGCAAGGGCAATACGGTGAAGTTAGCAAAGTTAGCAAGCATTCCTATACTATATCTAGTTTTCAGGCTCCGTAATATAGCTTGTATTGAATCTAGGCTAGATTTCTTGTAAGTTTTGGGATGTGTGAATACCAGGGGAAGTTATCATATGGGCAACATACGAGTTGAAAACATGTT
ACAATTTCCCCATGGTTTCACTTTGTAGGTATGTTTTAGTAATCTACTGTAGTTACCTGGTGGAGATGGATAGTCTCTTACCTGGTGGAGATGGATATGCTATTTTCCCGTGGCTTCAGTAAATATGTTTTAGTAATCTATTCAGTTCCCTGG
>TRINITY_DN126775_c0_g1_i2 from sample A1 / Example unspliced isoform:TGATGTAATCTGTTATTCTTATTGATTTCTAATTCAGTTTAGTGTTTGTGAATTTAGGTTTTGACTCTGGTGTTTTCTGTTGCAGGTCTTAATAATTCAGCTTATTGTGTATAAAGTAAACTTCACATATCAGCTCGCCTGGCTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACAT
TGGATGCAATGGACTTGGAAGTACCAAAGCAAGAATGGAACTTTGCCCTGCAGAATCACACTAGTTTAACGAATATGGAGAAGAAGGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGACGACTGTACTATAATTATTGGATCTGGTGTATGT
ACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAACTTTCTTTATCATGGTGTAAGTCGAACATGAGCAAATTACTTCTGTCAATTGCTCCTAAATTCACTCGTTTGCAGTCCCTTAATCTACGCCAGAACCAACATCAACTCGATGATCAAGCAGTGGAAATGGTTGCAAAGTACTGTCATGATTTACGTGCTCT
AGACCTTTCGAACAGTACCCAGCTGACAGACAGATCTATTAATGCTCTGGCGCTTGGTTGTAATCAACTTGAAAAACTTAATATAAGTGGATGTTCAAAAGTTACTGATTCGGCACTGATATTTCTGGCATCGAAGTGCAACAGATTGAGACATCTAAATCTCTGTGGATGTTGTCGAGCTGCGTCTGACAAGGCTTTGC
TGGCTCTGGCACAAAATTGCTGCGGCTTGCAATCTTTGAATTTGGGTTGGTGCGAGGAGGTGACTGATTTGGGTGTGACAGGTTTGGCACAATGGTGCCCTGAGATGAGGGCAGTGGATTTGTGTGGTTGTGTATTAATAACAGgtatgggaatgtaaggcatcagattagtttaaaatttcaatttcaaattcaacatg
gacttcagcctcattatattatttttattatacactgcagATAAAAGCGTTGTTGCATTGGCTGAAAACTGCCATCGCTTAAGATCATTGGGATTGTACTTCTGCCAAAATATCACTGACACGGCTATGTACTCTTTAGCAAACAGCAGCATATACGGGGCAGGGAAGGAAAACTCCAAACACAAGAGCAGTAATATTAG
GTACAACACTGAGCCAGTATCCACTCAAAGCAGTCAAAGATGCAAGCGAAACAATGGAGGTAGACAGAGTTGCGGTATCAGTGAACGCAATACAGCTGTTAGTCGTGATTACATGGAATCTGTTTTGAGTGACCAAGAGGGGTATGGCCTAGTGCAGTTAAATATTAGTCAATGCACATTTTTATCTGCTCCTGCTGTTC
AAGCTGTTTGTGATGCTTTCCCAGCACTGCATACTTGTCCGGAGAAGCATTCTCTCATCATAAGTGGCTGCCTAAACCTTACCTCAGTGCATTGTGTATGCGCAATTGAAGCCCTGAGAGAACGAAGAAGCAGAGCTGCAGTTTCTGATCATTCTGCAGGGATTCTAAATGCAAGGGCAATACGGTGAAGTTAGCAAAGT
TAGCAAGCATTCCTATACTATATCTAGTTTTCAGGCTCCGTAATATAGCTTGTATTGAATCTAGGCTAGATTTCTTGTAAGTTTTGGGATGTGTGAATACCAGGGGAAGTTATCATATGGGCAACATACGAGTTGAAAACATGTTACAATTTCCCCATGGTTTCACTTTGTAGGTATGTTTTAGTAATCTACTGTAGTTA
CCTGGTGGAGATGGATAGTCTCTTACCTGGTGGAGATGGATATGCTATTTTCCCGTGGCTTCAGTAAATATGTTTTAGTAATCTATTCAGTTCCCTGG
Intron 6 GTGAGAATCA ... ACATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.44 | 20.9 | 23 | 8.3 |
| A2 | 45.28 | 26.3 | 21.7 | 5.4 |
| A3 | 38.71 | 23.6 | 14.9 | 2.3 |
| A4 | 52.73 | 12.4 | 13.9 | 3.3 |
| A5 | 35.6 | 22.7 | 12.4 | 6 |
| A6 | 37.32 | 35 | 20.9 | 1.7 |
| A7 | 14.49 | 90.4 | 15.3 | 2.1 |
| A8 | 19.51 | 53.1 | 12.9 | 1.4 |
| A9 | 23.12 | 33.3 | 10 | 3 |
| A10 | 21.56 | 57.9 | 15.9 | 3.9 |
>TRINITY_DN119307_c0_g1_i16 from sample A3 / Example spliced isoformCAATGACAGGCACACGTGGCACCGTCCCAACATGTCACGTCAATTTCCCGCGCGGCTCCGTTTCTCCGCCAACACCCGGAATCGAATCCCGGCCACGACTTTTTCACTAATAAATTCACCTCAGGTCCAGAGAAATCAGATAGGCGAGAGCAACATCACTCGTCTTCTTCACAACGTGTTTTTCATTCGGTCTGGTCTCT
GGTCTTAATAATTCAGCTTATTGTGTATAAAGTAAACTTCACATATCAGCTCGCCTGGCTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTTGGAAGTACCAAAGCAAGAATGGAACTTTGCCCTGCAGAATCACACTAGTTTAACGAATATGGAGAAGA
AGGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGACGACCGTACTATAATTATTGGATCTGGCGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAACTTTCTTTATCATGACACAACAAGGTCGTTCAGAATTAGGAGCTT
TCTCTTGAACGCATCATTGGGAGCATTACGATGGTCTTCTATTGGGACCTTCGTATGAACAAGTTATTGAGTGAGGAATGATATGACCATATGCCAATAGTTACATGGAATCTTTGCAATCAACAATGAAATTATTGCAACAATGAATAGAACTTGTTCTATTGAGTTGGTTATTTTTTCAATTTTTTATCTCAATGATG
AGACCATGAAATTATGTAGCATTGAAACTCTTCGTGCATTAGAAACAACCCATTTAGCACTCATTT
>TRINITY_DN119307_c0_g1_i4 from sample A3 / Example unspliced isoform:CAATGACAGGCACACGTGGCACCGTCCCAACATGTCACGTCAATTTCCCGCGCGGCTCCGTTTCTCCGCCAACACCCGGAATCGAATCCCGGCCACGACTTTTTCACTAATAAATTCACCTCAGGTCCAGAGAAATCAGATAGGCGAGAGCAACATCACTCGTCTTCTTCACAACGTGTTTTTCATTCGGTCTGGTCTCT
GGTCTTAATAATTCAGCTTATTGTGTATAAAGTAAACTTCACATATCAGCTCGCCTGGCTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTTGGAAGTACCAAAGCAAGAATGGAACTTTGCCCTGCAGAATCACACTAGTTTAACGAATATGGAGAAGA
AGGAAAATGCTGATGGTAATGAAGATTCAAAATGGCAGGATTTACCCATGGAGCTCCTTATGCGCATACTTAAGCTTGTTGACGACCGTACTATAATTATTGGATCTGGCGTATGTACTGGCTGGAGAGAAGCATTCTGCATCGGTGTTCAAGAACTTTCTTTATCATGgtgagaatcaaggttcccctctttcttgtat
ttgatttaagaattatttttgcaacaggatgcatactggctcattgcctagtgatacatctgtaggttttacatgtttaggcattcaaaatcagtactgctgttccttcatatgtcctctcattttgtccaccattttcttcagtgatacaaatcttcatccttttgcacatttgcagACACAACAAGGTCGTTCAGAAT
TAGGAGCTTTCTCTAAGTCGAACATGAGCAAATTACTTCTGTCAATTGCTCCTAAATTCACTCGTTTGCAGTCCCTTAATCTACGCCAGAACCAACATCAACTCGATGATCAAGCAGTGGAAATGGTTGCAAAGTACTGTCATGATTTACGTGCTCTAGACCTTTCGAACAGTACCCAGCTGACAGACAGCTCTATTAAT
GCTCTGGCGCTTGGTTGTAATCAACTTGAAAAACTTAATATAAGTGGATGTTCAAAAGTTACTGATTCGGCACTGATATTTCTGGCAACGAAGTGCAACAGATTGAGACATCTAAATCTCTGTGGATGTTGTCGAGCTGCGTCTGACAAGGCTTTGCTGGCTCTGGCACAAAATTGCTGCGGCTTGCAATCTTTGAATTT
GGGTTGGTGCGAGGAGGTGACTGATTTGGGTGTGACAGGTTTGGCACAATGGTGCCCTGAGATGAGGGCAGTGGATTTGTGTGGTTGTGTATTAATAACAGATAAAAGCGTTGTTGCATTGGCTGAAAACTGCCATCGCTTAAGATCATTGGGATTGTACTTCTGCCAAAATATCACTGACACGGCTATGTACTCTTTAG
CAAACAGCAGCATATACGGGGCAGGGAAGGAAAACTCCAAACACAAGAGCAGTAATATTAGGTACAACACTGAGCCAGTATCCACTCAAAGCAGTCAAAGATGCAAGCGAAACAATGGAGGTAGACAGAGTTGCGGCATCAGTGAACGCAATACAGCTGTTAGTCGTGATTACATGGAATCTGTTTTGAGTGACCAAGAG
GGGTATGGCCTAGTGCAGTTAAATATTAGTCAATGCACATTTTTATCTGCTCCTGCTGTTCAAGCTGTTTGTGATACTTTCCCAGCACTGCATACTTGTCCGGAGAAGCATTCTCTCATCATAAGTGGCTGCCTGAACCTTACCTCAGTGCATTGTGTATGCGCAATTGAAGCCCTGAGAGAACGAAGAAGCAGAGCTGC
AGTTTCTGATCATTCTGCAGGGATTCTAAATGCAAGGGCAATACGGTGAAGTTAGCAAAGTTAGCAAGCATTCCTATCCTATATCTAGTTTTCAGGCTCCGTAATATAGCTTGTATTGAATCTAGGCTAGATTTCTTGTAAGTTTTGGGATGTGTGAATACCAGGGGAAGTTATCATATGGGCAACATACGAGTTGAAAA
CATGTTACAATTTCCCCATGGTTTCACTTTGTAGGTATGTTTTAGTAATCTACTGTAGTTACCTGGTGGAGATGGATAGTCTCTTACCTGGTGGAGATGGATATGCTATTTTCCCGTGGCTTCAGTAAATATGTTTTAGTAATCTATTCAGTTCCCTGGAGATGGGGTATACTGTTACCTGATGGAGATGGATAAACTCT
TATTTTTCCATGGCTTCAGTTTGTAAGTATGTTTTAGTAATCTATCAGTTCCCTGGAGATGGGGTATACTATACTGTTCACGAGTGACATGAATTTCAATGTTTCAACTTTCAAGTGCCACCCTGTTAAAACCTGTGATACTATGAAACAGGCTCTTTATCTATTATAGTGAAGTGGTGCTCAAATAAGTTATTGCTGAT
TGTGCTCCTGTTATGCCATCT
Intron 7 GTTTTCTTTC ... TCTGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.46 | 4 | 4 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 55.56 | 2 | 1 | 4 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 81.82 | 2 | 7 | 11 |
| A7 | 56.32 | 19 | 25 | 24 |
| A8 | 59.32 | 12 | 18 | 17 |
| A9 | 55 | 9 | 8 | 14 |
| A10 | 50 | 14 | 11 | 17 |
>TRINITY_DN48172_c1_g3_i5 from sample A10 / Example spliced isoformTGTTGTCTTTCATGCCACTATAGATTCTCAGGGCCCAGAAACTTATCAGAAGCAGAGAGGCAGCATGTGATTCAGTGTTTGGAGGCTGCCATTAAAAGAAGAGCATTAGAGGGCATGAGATTGGAACTATGCACCAAGGATTGAGTTGGGCCAGCTACAATTTGTCCTTGCAGAGAGAGTTAAGGGAGCAGTTTCAGTCA
CACTCTATAAGATCACACAGGTTTCGATTTCAGATTAAAATGCCTCACGCATTCCCATGTTATGCTCATATCACATGCCTTCGGAGCTTGGTCTCCATTCCTTCATCCACCATTCACCTTTCTTGTCTTCTTTCATTTGTTCTTCATTCTAACTGTTTTGTTCCAAGTTTCCCATTGCTCTGTTCTATACCCGTTCTACC
CTGTAAACCCAATTCTTCCCACGTTTCCCATTTGGTCATGCTTCATATTTTACTTATTTCCCACATTTTTCTTTTTCCTTTTCCTTCTCCTGTATGTTCTTGATACCCTTCCATCTCTTGTTTGTTTTGAGCTGCGACAACACTAAAATGGGAGAAACTATGATGTCCTTGTTCAGGTGTTAATAATTCAGCTTATGTGT
ATAAAGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACAATGATATTTATAAAGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTT
>TRINITY_DN48172_c1_g3_i1 from sample A10 / Example unspliced isoform:CCACTATAGATTCTCAGGGCCCATAAACTTATCAGGAGTACTACATCAGGCACACTGATGGATGTACCGTGAATTCAGAAGCAGAGAGGCAGCATGTGATTCAGTGTTTGGAGGCTGCCATTAAAAGAAGAGCATTAGAGGGCATGAGATTGGAACTATGCACCAAGGATTGAGTTGGGCCAGCTACAATTTGTCCTTGC
AGAGAGAGTTAAGGGAGCAGTTTCAGTCACACTCTATAAGATCACACAGGTTTCGATTTCAGATTAAAATGCCTCACGCATTCCCATGTTATGCTCATATCACATGCCTTCGGAGCTTGGTCTCCATTCCTTCATCCACCATTCACCTTTCTTGTCTTCTTTCATTTGTTCTTCATTCTAACTGTTTTGTTCCAAGTTTC
CCATTGCTCTGTTCTATACCCGTTCTACCCTGTAAACCCAATTCTTCCCACGTTTCCCATTTGGTCATGCTTCATATTTTACTTATTTCCCACATTTTTCTTTTTCCTTTTCCTTCTCCTGTATGTTCTTGATACCCTTCCATCTCTTGTTTGTTTTGAGCTGCGACAACACTAAAATGGGAGAAACTATGATGTCCTTG
TTCAGgttttctttccattttttaatcttgatgtaagctgtttttcttattgatttctgtgaattcaggttttgactctggtgttttctgttgtagGTGTTAATAATTCAGCTTATGTGTATAAAGTAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACAATGATATTTATAAAG
TAAACTTCACATATTAGCTCGCCTGGTTGACCATACCCTAGAAAGAAAACATTAAAACCATGATCTTTTCACCACCATCAACATTGGATGCAATGGACTT