sp|Q8L5Y5|ZDH17_ARATH ----> Probable protein S-acyltransferase 19
Intron 1 GTAGGGCAGC ... TCTGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.59 | 11 | 7 | 10 |
| A2 | 40.85 | 21 | 11 | 18 |
| A3 | 41.03 | 23 | 17 | 15 |
| A4 | 43.4 | 15 | 3 | 20 |
| A5 | 41.18 | 5 | 1 | 6 |
| A6 | 41.46 | 12 | 0 | 17 |
| A7 | 60.98 | 8 | 12 | 13 |
| A8 | 50 | 4 | 2 | 6 |
| A9 | 46.43 | 15 | 10 | 16 |
| A10 | 41.51 | 31 | 18 | 26 |
>TRINITY_DN48066_c2_g2_i4 from sample A10 / Example spliced isoformCTTTTCGTGACTGTCCAACGGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATCAGAAACCCTATCAGATCCGAGGCTGGACAATGCGTACAAATCATGCAGCCCTTGT
TTCGTAGGTCTATTTGTGGAGCAGTAAGGAGGACGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGGGGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGC
TATTACAGTGTTCTTCTTGCTGGCAGTTGCCTTCTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCGGTCTACACTCCTATGGCATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTA
CAAAGGAGAAGAAACAAGAATTTTCATCAAGCACTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGCAGGAGCTCTTTTGTTGTACAGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTC
GTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAAGACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTTGTTTTGCACATTATGCAATGCTGAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGT
TGGAAAGAAGAACTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGTATTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGCAGTGTGTACAGTGG
TGGCATTACTTGCTTCAATTCCATTAGGGGAGCTTTTCTTTTTTCATATTATACTGATTAAAAAGGGAATTACAACGTATGAATATGTTGTAGCAATGAGGTCACAAAGTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGT
TCTCTTGGTCTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCACCAGGATGAAGTTATTCCACACTTGGGCCCTGGTCAAGTGCCATCCACTGTTGATCCTGATGATGTGGAAGTTGTAAATAGGATAGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTTGCCAAATT
GAACCCAGATGAAGCCATGCGAGCAGTGGCAAAGGCTAGGGAATCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATACTGATTATAGTTCTAGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAACGACTGACAAATGAGCGGATTCAGTCACCTTTGAAATATAGCT
ATCCTCCAAGTCGTGCTAGCAAAGATGATATCGAAACTGGAACACAAAGCATAAGTAGCTACAGCAGTCCTGGTCATGTAAATGAATCGGCTACACTGAGTCCTCTCCCACTAGAGCACAGATATGGGCCTACAAGTGGGATGCATCTATCAGCTCCTCTGAATATGACACATGTGGAACCTTTGCCTGCAATAGCAACA
AATATGTCAAATATGAGGCCCAATATTCCTATTTACAATTCTCTCTATTCAGGTTTTTCTTCTGCAAGTGATGCTTATTCAGCATTCACCGATGATCATATTGAAGGTGGACTGTCACAAAATAACATGGTTGTTGGACAAGTCAGTGCAAACCAACCAAATAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTCTG
GGACCAAGGTGCTGGAAGGTATGTTTCGTTTGCAGTTCCTGGTAGAAATGAGCTTGTCAGTGAAGTAGGCACAGTTTTTCGTTCACAGGGACACTGGGCTGATGAATCATCATCTCCATCGTTACCCTCAGAAAATCTCACTAGGGAGGGTGATATGGACAGAAGATCTTCCTCTCCAAATCTTCAGACATTGCATTCAC
CCTCTCCTGATCTCCATGTATTTGACCTGCCCTCCCCTAAGCCATATGTGTATCCAAAGAGTTCATCTAGGCTGGGTTCAGTTTCACAACCTGAAAACCTTTTGTACAGTGGTGAATCTATATTCTACGGGGGTCCTCTTGGTGTACCTTTGATGGAAAGCGCTAGGAATGAAAGTTCAAGACCTGGCCTTGAAGGCTCT
CAAAAAACATCTAATTCCCATGTTATGCCACCCCAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATCAGTGCCATCTCAATCTCCTGTGTTTGTACCACGGTCTATGCAAGCAAACACGTTTTCTCGTTATTCTTCTCAATAGCTCCTGGCATTGTTCTTATTTAAGGTCGTGAACTAAGCTCCTAGTAATTTCAG
TGGACTCCTGAAAGGTTCCAATCTCAAGAAATTTATTTTGTTTCTGAGAGACCAGAAAATTAATTCAGTAGACTTTCCACTTTTGGATCATCTCAGGCACTTGGATCAACTGCAAGGTTGCACATTTAGCTATAATTTGATGATAGACTTATTGGCGGGGATTACTGAATTATTTGTGGCATTGGTATTTATTACTGGCC
GAAGTTTTCTGCCATTAGGTTTCTTATCTGACTTACTGGTAGTGGTTGGCCTCATGACTCCACTTTCTATTTACTGCTGTCAAGGGCTGGAGACAAGTATGGCAGTGGCAGTCAGAAGCATTAGTGTACCTTCCATTATCCGATTTACTTTTCAAGAAGGTTTTCAAGTAGTGCTAAAGGTGCAGATGCTTGATTTTTTG
AGCTGCTGACCATTACATTCATTGTAAATCATTGTACTATTTGTGAACACCATTTGAAATGCGTTCTATATAATGATTTTTATTTTGTTCTGAAGAACTAGTCTTTGCTACCGTGCAACACTCAGAAAACTAGATTTTACTTAATTGATTCTTTTACTGCAATATCATAAATATCAGGTAGTTTGTAGCTCTAGCTATGA
TTGGGGTTGGGCATGCCTTTTATATATTGCTCTTCAGAGTAATATATTATTGGAGCCTTGGGAATCTAAGTGTATATCTTGATGTGTTTGGGCCGTCATGTGTTGCCACTATTGATTATTCTCATAATCAAGTTTGCTTGTGTCATAGAGAAATGTTGTTTGTCAGTGGGACAGAAGAATAAATCAGGATTTCTTCTATT
ATCCACTTTGATTGCTAATGAGATATAAAGGTGGTGCTATAGATGCC
>TRINITY_DN48066_c2_g2_i1 from sample A10 / Example unspliced isoform:CTTTTCGTGACTGTCCAACGGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATgtagggcagcgggctcggagcgccaaattcgtgtttggtattttggttggtaagga
atttctttttcttttagcttttgtgcgcttatcctttttcttttttctgttttagCAGAAACCCTATCAGATCCGAGGCTGGACAATGCGTACAAATCATGCAGCCCTTGTTTCGTAGGTCTATTTGTGGAGCAGTAAGGAGGACGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGC
ATGCCGTCAGTGCTGCGGGGGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTTCTTGCTGGCAGTTGCCTTCTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTG
CGGTCTACACTCCTATGGCATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCACTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGC
AGGAGCTCTTTTGTTGTACAGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAAGACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTT
GTTTTGCACATTATGCAATGCTGAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGTATTGCTGTTC
TGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGCAGTGTGTACAGTGGTGGCATTACTTGCTTCAATTCCATTAGGGGAGCTTTTCTTTTTTCATATTATACTGATTAAAAAGGGAATTACAACGTATGAATATGTT
GTAGCAATGAGGTCACAAAGTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCTTGGTCTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCACCAGGATGAAGTTATTCCACACTTGGGCCC
TGGTCAAGTGCCATCCACTGTTGATCCTGATGATGTGGAAGTTGTAAATAGGATAGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTTGCCAAATTGAACCCAGATGAAGCCATGCGAGCAGTGGCAAAGGCTAGGGAATCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATA
CTGATTATAGTTCTAGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAACGACTGACAAATGAGCGGATTCAGTCACCTTTGAAATATAGCTATCCTCCAAGTCGTGCTAGCAAAGATGATATCGAAACTGGAACACAAAGCATAAGTAGCTACAGCAGTCCTGGTCATGTAAATGAATCG
GCTACACTGAGTCCTCTCCCACTAGAGCACAGATATGGGCCTACAAGTGGGATGCATCTATCAGCTCCTCTGAATATGACACATGTGGAACCTTTGCCTGCAATAGCAACAAATATGTCAAATATGAGGCCCAATATTCCTATTTACAATTCTCTCTATTCAGGTTTTTCTTCTGCAAGTGATGCTTATTCAGCATTCAC
CGATGATCATATTGAAGGTGGACTGTCACAAAATAACATGGTTGTTGGACAAGTCAGTGCAAACCAACCAAATAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTCTGGGACCAAGGTGCTGGAAGGTATGTTTCGTTTGCAGTTCCTGGTAGAAATGAGCTTGTCAGTGAAGTAGGCACAGTTTTTCGTTCACAGG
GACACTGGGCTGATGAATCATCATCTCCATCGTTACCCTCAGAAAATCTCACTAGGGAGGGTGATATGGACAGAAGATCTTCCTCTCCAAATCTTCAGACATTGCATTCACCCTCTCCTGATCTCCATGTATTTGACCTGCCCTCCCCTAAGCCATATGTGTATCCAAAGAGTTCATCTAGGCTGGGTTCAGTTTCACAA
CCTGAAAACCTTTTGTACAGTGGTGAATCTATATTCTACGGGGGTCCTCTTGGTGTACCTTTGATGGAAAGCGCTAGGAATGAAAGTTCAAGACCTGGCCTTGAAGGCTCTCAAAAAACATCTAATTCCCATGTTATGCCACCCCAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATCAGTGCCATCTCAATCTCC
TGTGTTTGTACCACGGTCTATGCAAGCAAACACGTTTTCTCGTTATTCTTCTCAATAGCTCCTGGCATTGTTCTTATTTAAGGTCGTGAACTAAGCTCCTAGTAATTTCAGTGGACTCCTGAAAGGTTCCAATCTCAAGAAATTTATTTTGTTTCTGAGAGACCAGAAAATTAATTCAGTAGACTTTCCACTTTTGGATC
ATCTCAGGCACTTGGATCAACTGCAAGGTTGCACATTTAGCTATAATTTGATGATAGACTTATTGGCGGGGATTACTGAATTATTTGTGGCATTGGTATTTATTACTGGCCGAAGTTTTCTGCCATTAGGTTTCTTATCTGACTTACTGGTAGTGGTTGGCCTCATGACTCCACTTTCTATTTACTGCTGTCAAGGGCTG
GAGACAAGTATGGCAGTGGCAGTCAGAAGCATTAGTGTACCTTCCATTATCCGATTTACTTTTCAAGAAGGTTTTCAAGTAGTGCTAAAGGTGCAGATGCTTGATTTTTTGAGCTGCTGACCATTACATTCATTGTAAATCATTGTACTATTTGTGAACACCATTTGAAATGCGTTCTATATAATGATTTTTATTTTGTT
CTGAAGAACTAGTCTTTGCTACCGTGCAACACTCAGAAAACTAGATTTTACTTAATTGATTCTTTTACTGCAATATCATAAATATCAGGTAGTTTGTAGCTCTAGCTATGATTGGGGTTGGGCATGCCTTTTATATATTGCTCTTCAGAGTAATATATTATTGGAGCCTTGGGAATCTAAGTGTATATCTTGATGTGTTT
GGGCCGTCATGTGTTGCCACTATTGATTATTCTCATAATCAAGTTTGCTTGTGTCATAGAGAAATGTTGTTTGTCAGTGGGACAGAAGAATAAATCAGGATTTCTTCTATTATCCACTTTGATTGCTAATGAGATATAAAGGTGGTGCTATAGATGCC
Intron 2 GTTTATATTT ... TCTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.68 | 116 | 16.7 | 36 |
| A2 | 18.92 | 60 | 11.6 | 14 |
| A3 | 26.04 | 90.9 | 16.7 | 32 |
| A4 | 22.81 | 77.8 | 12.3 | 23 |
| A5 | 18.87 | 86 | 9.9 | 20 |
| A6 | 20.9 | 53 | 3 | 14 |
| A7 | 22.57 | 54.9 | 7.5 | 16 |
| A8 | 33.33 | 18 | 0.7 | 9 |
| A9 | 21.05 | 45 | 5.2 | 12 |
| A10 | 20.63 | 50 | 11.8 | 13 |
>TRINITY_DN118955_c6_g1_i11 from sample A1 / Example spliced isoformGGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATGTAGGGCAGCGGGCTCGGAGCGCCAAATTCGTGTTTGGTATTTTGGTTGGTAAGGAATTTCTTTTTCTTTTAGCT
TTTGTGCGCTTATCCTTTTTCTTTTTTCTGTTTTAGCAGAAACCCTATCAGATCCGAGGCTGGACAATGCGTACAAATCATGCAGCCCTTGTTTCGTAGGTCTATTTGTGGAGCAGTAAGGAGGACGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGG
GGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTTCTTGCTGGCAGTTGCCTTCTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCCGTCTACACTCCTATGGC
ATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCACTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGCAGGAGCTCTTTTGTTGTAC
AGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAAGACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTTGTTTTGCACATTATGCAAT
GCTGAGGTATTGCATATTGTAATTTCTTTCAGAATTCGGTTATTATGCATTTCGTTATTTGAGGACAAAGTTTATTTTTTCTAGATATCTAGGATTGTATATTTTAATGCCAGATATATCGCAGGATAAACATATCTGTAAAAAATGCAGGTAGCTGCTAAACCTCAATAGATGAATCTGTGGAATTGTGCCAGGAACAC
TTCAAAATTGGGTTTCCCATATGGAAGTAATTTTAGATTACGCTGTTGTCATACTACATTATATTGGATGCTCTGTAGACAGTAGTCTGTGTTGTTGCCATTTGTATGAACCATAGTAGCAAGATTTGAAAAAAAACATGAAAAAATCTAGTATGGCTATAATGCAGACCTTAGAAGTAGACATCTCATAAATACTAAAA
CATGAGTTTTTCAAAATTTACAAAATTTAAAATATACATAAATTCTTCAAAATTTTGAAATAACATTCATTTTTCATTGTGAACCAATTCGAAACATAATATATAACATACCTGTTTAACACAAAAGTACAAGTGAAACAACATAAAGACAGAAATTTTAAATAATAAGTTAAATGTTCAGGCTCATCATGACCTGAGTA
TGATGACCTGAGTGTAACGTGCGTGATTTCAAAGAAAAGTCCAAGTAGTAGGAAGCACTTATTAATCAAAGTTAATTCAAAACATTAAAATGGAACAATTAATTTCCATTCAAAAAATCAAGGAGAAAAATACTCATATTTGTTTGAAATTATTATTTTGTTAATAGTTAAACTATAGAATTAGCATATAAGGAG
>TRINITY_DN118955_c6_g1_i2 from sample A1 / Example unspliced isoform:GGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATGTAGGGCAGCGGGCTCGGAGCGCCAAATTCGTGTTTGGTATTTTGGTTGGTCTATTTGTGGAGCAGTAAGGAGGA
CGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGGGGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTTCTTGCTGGCAGTTGCCTT
CTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCCGTCTACACTCCTATGgtttatattttctcctctcctttcttcttttggagcaattttaaaaattatatagtagtaagatcagtagtaagatcgctgataccttttgcttcctttattcctgatactttctgaaatttgaatc
ttttgcagGCATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCACTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGCAGGAGCTCT
TTTGTTGTACAGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAAGACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTTGTTTTGCAC
ATTATGCAATGCTGAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGTATTGCTGTTCTGGTGCGCT
GTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGCAGTGTGTACAGTGGTGGCATTACTTGCTTCAATTCCATTAGGGGAGCTTTTCTTTTTTCATATTATACTGATTAAAAAGGGAATTACAACGTATGAATATGTTGTAGCAATG
AGGTCACAAAGTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCTTGGTCTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCACCAGGATGAAGTTATTCCACACTTGGGCCCTGGTCAAGT
GCCATCCACTGTTGATCCTGATGATGTGGAAGTTGTAAATAGGATAGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTTGCCAAATTGAACCCAGACGAAGCCATGCGAGCAGTGGCAAAGGCTAGGGAATCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATACTGATTATA
GTTCTAGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAACGACTGACAAATGAGCGGATTCAGTCACCTTTGAAATATAGCTATCCTCCAAGTCGTGCTAGCAAAGATGATATCGAAACTGGAACACAAAGCATAAGTAGCTACAGCAGTCCTGGTCATGTAAATGAATCGGCTACACTG
AGTCCTCTCCCACTAGAGCACAGATATGGGCCTACAAGTGGGATGCATCTATCAGCTCCTCTGAATATGACACATGTGGAACCTTTGCCTGCAATAGCAACAAATATGTCAAATATGAGGCCCAATATTCCTATTTACAATTCTCTCTATTCAGGTTTTTCTTCTGCAAGTGATGCTTATTCAGCATTCACCGATGATCA
TATTGAAGGTGGACTGTCACAAAATAACATGGTTGTTGGACAAGTCAGTGCAAACCAACCAAATAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTCTGGGACCAAGGTGCTGGAAGGTATGTTTCGTTTGCAGTTCCTGGTAGAAATGAGCTTGTCAGTGAAGTAGGCACAGTTTTTCGTTCACAGGGACACTGGG
CTGATGAATCATCATCTCCATCGTTACCCTCAGAAAATCTCACTAGGGAGGGTGATATGGACAGAAGATCTTCCTCTCCAAATCTTCAGACATTGCATTCACCCTCTCCTGATCTCCATGTATTTGACCTGCCCTCCCCTAAGCCATATGTGTATCCAAAGAGTTCATCTAGGCTGGGTTCAGTTTCACAACCTGAAAAC
CTTTTGTACAGTGGTGAATCTATATTCTACGGGGGTCCTCTTGGTGTACCTTTGATGGAAAGCACTAGGAATGAAAGTTCAAGACCTGGCCTTGAAGGCTCTCAAAAAACATCTAATTCCCATGTTATGCCACCCCAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATCAGTGCCATCTCAATCTCCTGTGTTTGT
ACCACGGTCTATGCAAGCAAACACGTTTTCTCGTTATTCTTCTCAATAGCTCCTGGCATTGTTCTTATTTAAGGTCGTGAACTAAGCTCCTAGTAATTTCAGTGGACTCCTGAAAGGTTCCAATCTCAAGAAATTTATTTTGTTTCTGAGAGACCAGAAAATTAATTCAGTAGACTTTCCACTTTTGGATCATCTCAGGC
ACTTGGATCAACTGCAAGGTTGCACATTTAGCTATAATTTGATGATAGACTTATTGGCGGGGATTACTGTATTATTTGTGGCATTGGTATTTATTACTGGCCGAAGTTTTCTGCCATTAGGTTTCTTATCTGACTTACTGGTAGTGGTTGGCCTCATGACTCCACTTTCTATTTACTGCTGTCAAGGGCTGGAGACAAGT
ATGGCAGTGGCAGTCAGAAGCATTAGTGTACCTTCCATTATCCGATTTACTTTTCAAGAAGGTTTTCAAGTAGTGCTAAAGGTGCAGATGCTTGATTTTTTGAGCTGCTGACCATTACATTCATTGTAAATCATTGTACTATTTGTGAACACCATTTGAAATGCGTTCTATATAATGATTTTTATTTTGTTCTGAAGAAC
TAGTCTTTGCTACCGTGCAACATTCAGAAAACTAGATTTTACTTAATTGATTCTTTTACTGCAATATCATAAATATCAGGTAGTTTGTAGCTCTAGCTATGATTGGGGTT
Intron 3 GTTAGTTTCA ... TGTATAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.89 | 112.3 | 14.7 | 37 |
| A2 | 24.37 | 100.1 | 4 | 32 |
| A3 | 27.75 | 103.7 | 2.9 | 39.7 |
| A4 | 25.28 | 101.2 | 3 | 34 |
| A5 | 17.37 | 48.2 | 1 | 10 |
| A6 | 23.62 | 98 | 0 | 30 |
| A7 | 24.75 | 161.7 | 0.6 | 53 |
| A8 | 25.35 | 56.2 | 1.7 | 19 |
| A9 | 22.48 | 132.4 | 2 | 38 |
| A10 | 27.57 | 136 | 2 | 51 |
>TRINITY_DN118955_c6_g1_i16 from sample A1 / Example spliced isoformGGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATGTAGGGCAGCGGGCTCGGAGCGCCAAATTCGTGTTTGGTATTTTGGTTGGTCTATTTGTGGAGCAGTAAGGAGGA
CGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGGGGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTTCTTGCTGGCAGTTGCCTT
CTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCGGTCTACACTCCTATGGCATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCA
CTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGCAGGAGCTCTTTTGTTGTACAGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAA
GACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTTGTTTTGCACATTATGCAATGCTGAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCTCT
CATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGTATTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGCAGTGTGTACAGTGGTGGCATTACTTGCTTCAATTCCATTAGGGGAGC
TTTTCTTTTTTCATATTATACTGATTAAAAAGGGAATTACAACGTATGAATATGTTGTAGCAATGAGGTCACAAAGTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCTTGGTCTGCAGTATAAAGGTGCATGGTGT
ACACCACCTAGAATATTTGTTGAGCACCAGGATGAAGTTATTCCACACTTGGGCCCTGGTCAAGTGCCATCCACTGTTGATCCTGATGATGTGGAAGTTGTAAATAGGATAGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTTGCCAAATTGAACCCAGACGAAGCCATGCGAGCAGTGGCAAA
GGCTAGGGAATCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATACTGATTATAGTTCTAGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAACGACTGACAAATGAGCGGATTCAGTCACCTTTGAAATATAGCTATCCTCCAAGTCGTGCTAGCAAAGATGATATCG
AAACTGGAACACAAAGCATAAGTAGCTACAGCAGTCCTGGTCATGTAAATGAATCGGCTACACTGAGTCCTCTCCCACTAGAGCACAGATATGGGCCTACAAGTGGGATGCATCTATCAGCTCCTCTGAATATGACACATGTGGAACCTTTGCCTGCAATAGCAACAAATATGTCAAATATGAGGCCCAATATTCCTATT
TACAATTCTCTCTATTCAGGTTTTTCTTCTGCAAGTGATGCTTATTCAGCATTCACCGATGATCATATTGAAGGTGGACTGTCACAAAATAACATGGTTGTTGGACAAGTCAGTGCAAACCAACCAAATAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTCTGGGACCAAGGTGCTGGAAGGTATGTTTCGTTTGC
AGTTCCTGGTAGAAATGAGCTTGTCAGTGAAGTAGGCACAGTTTTTCGTTCACAGGGACACTGGGCTGATGAATCATCATCTCCATCGTTACCCTCAGAAAATCTCACTAGGGAGGGTGATATGGACAGAAGATCTTCCTCTCCAAATCTTCAGACATTGCATTCACCCTCTCCTGATCTCCATGTATTTGACCTGCCCT
CCCCTAAGCCATATGTGTATCCAAAGAGTTCATCTAGGCTGGGTTCAGTTTCACAACCTGAAAACCTTTTGTACAGTGGTGAATCTATATTCTACGGGGGTCCTCTTGGTGTACCTTTGATGGAAAGCACTAGGAATGAAAGTTCAAGACCTGGCCTTGAAGGCTCTCAAAAAACATCTAATTCCCATGTTATGCCACCC
CAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATCAGTGCCATCTCAATCTCCTGTGTTTGTACCACGGTCTATGCAAGCAAACACGTTTTCTCGTTATTCTTCTCAATAGCTCCTGGCATTGTTCTTATTTAAGGTCGTGAACTAAGCTCCTAGTAATTTCAGTGGACTCCTGAAAGGTTCCAATCTCAAGAAATT
TATTTTGTTTCTGAGAGACCAGAAAATTAATTCAGTAGACTTTCCACTTTTGGATCATCTCAGGCACTTGGATCAACTGCAAGGTTGCACATTTAGCTATAATTTGATGATAGACTTATTGGCGGGGATTACTGTATTATTTGTGGCATTGGTATTTATTACTGGCCGAAGTTTTCTGCCATTAGGTTTCTTATCTGACT
TACTGGTAGTGGTTGGCCTCATGACTCCACTTTCTATTTACTGCTGTCAAGGGCTGGAGACAAGTATGGCAGTGGCAGTCAGAAGCATTAGTGTACCTTCCATTATCCGATTTACTTTTCAAGAAGGTTTTCAAGTAGTGCTAAAGGTGCAGATGCTTGATTTTTTGAGCTGCTGACCATTACATTCATTGTAAATCATT
GTACTATTTGTGAACACCATTTGAAATGCGTTCTATATAATGATTTTTATTTTGTTCTGAAGAACTAGTCTTTGCTACCGTGCAACATTCAGAAAACTAGATTTTACTTAATTGATTCTTTTACTGCAATATCATAAATATCAGGTAGTTTGTAGCTCTAGCTATGATTGGGGTT
>TRINITY_DN118955_c6_g1_i3 from sample A1 / Example unspliced isoform:CTTCAAACCAATCATATGGGTTTAGACATGTTCAGTCTCTAAGAAGAGCAAATGGCTAGGTATGGTCATGTAGCTTGCCTAGCATATGTATTGCCATGCATCTATTAATGTGTGGATGCACAGTGATCAGGATACTATTGTTGACTAGTAGAGGTAGGCTCCTAAGTATGCCTCAACAATATTCTGAGGTTTTGTTTATT
TATGTTGGAAATCATACCTTGTTTGACTCAGTTGCTCTAAATTTTTTTTGACATACCTCTGCCTATTACTCTCACGATATGTTGTCGCAGCTGTAATGATGTCCTGTGCGACTTTTGAGAACTCAAGGGGCAGAGTTGAATGCTCTGTGAATGCTTACTAAGAAGCAATGTAGCTATGTAATATTTGACATTTGTCTGGG
GGAAAACTATTGATGATCAATCATCAGCATCCAATTGCATGGCTGTGCATGTGCAGGTGACTATAATCACTTGGAAATGCATTATGAAAGGCTAGACTTGAATGTTACTTTCAATGATGCAAATGGCCGAGTCTGATTTTATGAAAGTTTTATAATCAAGTCAAGTTGGTTGCAATAGTAGCATGAAAATGGAAGGACAA
TATAATACTTGAGGATCAACATTAAATTTCCTGTCAAAATGGAACAATCAGGCTTTATAATAAGCTGAGAATAGTGGAAGTATTGATGCATGTTAAAATCCCGGGAGCTTAATTGGGCATACGCATCCTTCCCTTTATAAATCTAAGGCTGAGTTGATATTATCAGGAACTCAATGTTTCTGATAGTCTAGGGAGATTAT
TGGTTAGGGTATGTTTTCAAACCTTGCTTCATTGCTTGAAAGATAAACTTCTTATTAACAACATACTCCTCTCATGTACTTGAAATGAAATATAGTTTGCATTATCTTTGTGTTTGTATCTTTGTCCTCTCATGTCTATGCTTGGCATGCTGTTACTCATTTTTAGTGAACTGAAACTGTATTCTTTCAGAGATTTTCTT
GAAGGATCTAAAGTTTATGTTGTTTGGGGATAACTTCATAGAATGTTATGTTTGGAGTCTGGACCACAGAATGCCTGTACGAAATCCTCAAAGTAAAATTTCTATTAAAAAGTTGAATGATTGCTGAAATCTAGGTGTGGACGTCAAGTCATGGAAGAGTTCTATAAAATATGATAAAGCTAATAACATTCAGACAATAT
TAAGGTTCTCTACGGTGGATAACTGGTATAAAAAATTATTCTACTTTTGTCACTGTAGTTGAGTTTGTTGTTGTCTTGGTGCAGGCAGTGTGTACAGTGGTGGCATTACTTGCTTCAATTCCATTAGGGGAGCTTTTCTTTTTTCATATTATACTGATTAAAAAGgttagtttcatttaagaacttgtattattctctac
aatttttttaaacttctattcattacactgaacatcctttaacgagaatactgtatagcagGGAATTACAACGTATGAATATGTTGTAGCAATGAGGTCACAAAGTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTC
TTGGTCTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCACCAGGTATATTTATTTGTTTTCAATGATTTCAAAAATTAGTTTTGGTCTGTAATTTGGGCAGGCTATAGTAG
Intron 4 GTGTGTAGTA ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.37 | 98 | 41.3 | 10 |
| A2 | 13.33 | 91 | 14 | 19.1 |
| A3 | 17.67 | 111.4 | 24.6 | 14.5 |
| A4 | 16.3 | 104.6 | 20.4 | 12.2 |
| A5 | 17.35 | 86.4 | 19 | 13 |
| A6 | 21.29 | 89 | 25 | 8.3 |
| A7 | 19.1 | 121.5 | 30.5 | 5.4 |
| A8 | 27.69 | 45.1 | 18.5 | 1.8 |
| A9 | 24.24 | 85.8 | 29.6 | 4.9 |
| A10 | 17.22 | 106.6 | 23.4 | 6.7 |
>TRINITY_DN118955_c6_g1_i15 from sample A1 / Example spliced isoformCGCAGGGGGCGAGCCCCCGACCCTGGGAGACGCGTCCCCGTGGAACACTGGAATTAGATTCTATCTAATATCTTACGATCTGCTTATTTTTCAATAAAAAAACATTTCATGTCCTTGAAATGTTTTGTGTCCCAGAGAACAAAACTGTTTCCTGTGATTAATCATGGGTAAATATTCAATTGCATGAAAAGTGTCTGCCA
CATTAATGCTGAATTATCATGCCATGCTTCCAACTAGTGTTTGTTTTGTTATTCAAATGATGTGGTTTTCCATTCGGTTATTTTTTCAAACTATGTTTATTAACACTTGTTTTCCATGACTCATTCTTTTAGGTATGCCTAACAATTTACTAAACCGCTCAATAAATTTAATAGTCAGTGATTTTCCTTGTTCCTATTTG
TGGCATTTTAGCATGAAAAGTATGGCCAGAGTAAGATTCTAACTTTCAAAGACAATGGAACGGGATACTGAACTGGGTAGTTTTTTTAAAATAAATAATGAATGGATGTGCTTAACGATGGAAGTTGCAGCTTGCTTTACCTACAATACAGTTTTGTCATGTTTATAATTACTTTTACTATGATCTGTAGCCAGATGGCT
TTAGCTTTATGTCAGTCATTCTTTATGCAATGCAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGT
ATTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGTATGTCTTCACACAACCTAATAGGATTCATAGGATTGTGTATTTGAATGGTGTTAGCTTGCCGAACTGCTGCACTTTTTTATAATGATAGGCTG
AAAATAAGCTTTTGGAGTGGTATATATTTTTCAATAAATTTGTGTAGTACCTGATTTGTATACCACTTCTGTGATCAGAATTTGAACCTAGCAAGATAGTGTGTTGGTTTACTCCATGATAACATGGTTTAAGTACAAGTGAAGATGGGACCCTAAAAGATGTCTCCCGTCAAACATGAGAATAAAATTTGGATTCTACA
AGCATCTGTTTTGCTTTTCATACCTAATGAAATTTTTGGATGCATATTTCCCCTTCATGAGAAACCTTTGGTACTTTGTATGCAGGCATTTTAGGTGGATAGAGGTACCCTTTTTCTTCTTTTAATAAATATAAAACAATAATTATGTCTAAGAAAAATACATCAAAGATATTAGAACGGCTAAGACTTAAGGTAATATA
GTTGTGCTATTCATTTTTCTGGAATAGGTTGTGTTGGTCTTTCAGATCTCATCCATTCTGAGTAGGGTTTTTCTTGATCTTTGATACAAGAACATACCATCTAGAACTTCAGAATCATATAAAGAAGAACCAGGGAGGCCGACTGATATCCTTGAGGCCAATTTGGAGGTGTCGGACTAGGCTTCAGGCCACACATCATC
ACCATGACAGATGGTTCAGCTCTAGACAGATCTAGAGCAGGGTGCATCCCACCCATCAGACTACCCCCCAGCTTCAGCAGAGTACCGAAGGTTCTATCTAGAGCTTCTTTCCCTCAATCCTACGTACCCCTAGGATTGTACAGCTGGATCCCACTATGGTGCTCAATGACTCCAACAACAAGTCAGTACCCTGGTTTCCT
TTCTTGCCCACAGTCACCAGGTTTGGGAGACCTTGACCTACTTTTGTGGTTATTTGTTGGACATTAATAAAATTATCTTATCTTATCTCTCTTTATCAGCACTAAGGTGTCCAG
>TRINITY_DN118955_c6_g1_i7 from sample A1 / Example unspliced isoform:CGCAGGGGGCGAGCCCCCGACCCTGGGAGACGCGTCCCCGTGGAACACTGGAATTAGATTCTATCTAATATCTTACGATCTGCTTATTTTTCAATAAAAAAACATTTCATGTCCTTGAAATGTTTTGTGTCCCAGAGAACAAAACTGTTTCCTGTGATTAATCATGGGTAAATATTCAATTGCATGAAAAGTGTCTGCCA
CATTAATGCTGAATTATCATGCCATGCTTCCAACTAGTGTTTGTTTTGTTATTCAAATGATGTGGTTTTCCATTCGGTTATTTTTTCAAACTATGTTTATTAACACTTGTTTTCCATGACTCATTCTTTTAGGTATGCCTAACAATTTACTAAACCGCTCAATAAATTTAATAGTCAGTGATTTTCCTTGTTCCTATTTG
TGGCATTTTAGCATGAAAAGTATGGCCAGAGTAAGATTCTAACTTTCAAAGACAATGGAACGGGATACTGAACTGGGTAGTTTTTTTAATATTAATAATGAATGGATGTGCTTAACGATGGAAGTTGCAGCTTGCTTTACCTACAATACAGTTTTGTCATGTTTATAATTACTTTTACTATGATCTGTAGCCAGATGGCT
TTAGCTTTATGTCAGTCATTCTTTATGCAATGCAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGgtgtgtagtaaccactacctgtaatgatagttgcacaatggaatacagtgtcctttaattgctgcaccattttatcctttcccattgatgacgtta
ggcctgtttcattaggtcatatttttttttttgaggatcagattgttctttcattgacaagtcattaggttcagagaactgatacttgggagttatactaagattgtttaatgatgatatttttggcttgttatcttggcgtttgaggaaccgactatattttatttgcagTGGCTGAATAACTGTGTTGGAAAGAAGAA
CTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGGTAAGGATGAAAGCATCTATTTGATGATTTCTAAGTAGAGATTCAGCAGTTTTAAAAAGTGTTTGGAAGAAATATATTTTCAGTGATCACAATTTTTCTATTTCTATGCACTCTCCATTTCTTATTTTGGCTTGTTAATGGCAGCTTCTGCTTGAAG
GGGGAATAGGTATTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAG
Intron 5 GTAAGGATGA ... TTAATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.79 | 99 | 18.5 | 11 |
| A2 | 13.38 | 99 | 18.7 | 13 |
| A3 | 15.93 | 106.8 | 17.9 | 23 |
| A4 | 10.14 | 116 | 9.8 | 17 |
| A5 | 14.48 | 74 | 8.5 | 17 |
| A6 | 6.22 | 98 | 7.5 | 6 |
| A7 | 8 | 108 | 10.9 | 9 |
| A8 | 8.76 | 37 | 2.3 | 5 |
| A9 | 5.93 | 88 | 4.5 | 7 |
| A10 | 7.84 | 90 | 5.9 | 10 |
>TRINITY_DN118955_c6_g1_i15 from sample A1 / Example spliced isoformCGCAGGGGGCGAGCCCCCGACCCTGGGAGACGCGTCCCCGTGGAACACTGGAATTAGATTCTATCTAATATCTTACGATCTGCTTATTTTTCAATAAAAAAACATTTCATGTCCTTGAAATGTTTTGTGTCCCAGAGAACAAAACTGTTTCCTGTGATTAATCATGGGTAAATATTCAATTGCATGAAAAGTGTCTGCCA
CATTAATGCTGAATTATCATGCCATGCTTCCAACTAGTGTTTGTTTTGTTATTCAAATGATGTGGTTTTCCATTCGGTTATTTTTTCAAACTATGTTTATTAACACTTGTTTTCCATGACTCATTCTTTTAGGTATGCCTAACAATTTACTAAACCGCTCAATAAATTTAATAGTCAGTGATTTTCCTTGTTCCTATTTG
TGGCATTTTAGCATGAAAAGTATGGCCAGAGTAAGATTCTAACTTTCAAAGACAATGGAACGGGATACTGAACTGGGTAGTTTTTTTAAAATAAATAATGAATGGATGTGCTTAACGATGGAAGTTGCAGCTTGCTTTACCTACAATACAGTTTTGTCATGTTTATAATTACTTTTACTATGATCTGTAGCCAGATGGCT
TTAGCTTTATGTCAGTCATTCTTTATGCAATGCAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGT
ATTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGTATGTCTTCACACAACCTAATAGGATTCATAGGATTGTGTATTTGAATGGTGTTAGCTTGCCGAACTGCTGCACTTTTTTATAATGATAGGCTG
AAAATAAGCTTTTGGAGTGGTATATATTTTTCAATAAATTTGTGTAGTACCTGATTTGTATACCACTTCTGTGATCAGAATTTGAACCTAGCAAGATAGTGTGTTGGTTTACTCCATGATAACATGGTTTAAGTACAAGTGAAGATGGGACCCTAAAAGATGTCTCCCGTCAAACATGAGAATAAAATTTGGATTCTACA
AGCATCTGTTTTGCTTTTCATACCTAATGAAATTTTTGGATGCATATTTCCCCTTCATGAGAAACCTTTGGTACTTTGTATGCAGGCATTTTAGGTGGATAGAGGTACCCTTTTTCTTCTTTTAATAAATATAAAACAATAATTATGTCTAAGAAAAATACATCAAAGATATTAGAACGGCTAAGACTTAAGGTAATATA
GTTGTGCTATTCATTTTTCTGGAATAGGTTGTGTTGGTCTTTCAGATCTCATCCATTCTGAGTAGGGTTTTTCTTGATCTTTGATACAAGAACATACCATCTAGAACTTCAGAATCATATAAAGAAGAACCAGGGAGGCCGACTGATATCCTTGAGGCCAATTTGGAGGTGTCGGACTAGGCTTCAGGCCACACATCATC
ACCATGACAGATGGTTCAGCTCTAGACAGATCTAGAGCAGGGTGCATCCCACCCATCAGACTACCCCCCAGCTTCAGCAGAGTACCGAAGGTTCTATCTAGAGCTTCTTTCCCTCAATCCTACGTACCCCTAGGATTGTACAGCTGGATCCCACTATGGTGCTCAATGACTCCAACAACAAGTCAGTACCCTGGTTTCCT
TTCTTGCCCACAGTCACCAGGTTTGGGAGACCTTGACCTACTTTTGTGGTTATTTGTTGGACATTAATAAAATTATCTTATCTTATCTCTCTTTATCAGCACTAAGGTGTCCAG
>TRINITY_DN118955_c6_g1_i7 from sample A1 / Example unspliced isoform:CGCAGGGGGCGAGCCCCCGACCCTGGGAGACGCGTCCCCGTGGAACACTGGAATTAGATTCTATCTAATATCTTACGATCTGCTTATTTTTCAATAAAAAAACATTTCATGTCCTTGAAATGTTTTGTGTCCCAGAGAACAAAACTGTTTCCTGTGATTAATCATGGGTAAATATTCAATTGCATGAAAAGTGTCTGCCA
CATTAATGCTGAATTATCATGCCATGCTTCCAACTAGTGTTTGTTTTGTTATTCAAATGATGTGGTTTTCCATTCGGTTATTTTTTCAAACTATGTTTATTAACACTTGTTTTCCATGACTCATTCTTTTAGGTATGCCTAACAATTTACTAAACCGCTCAATAAATTTAATAGTCAGTGATTTTCCTTGTTCCTATTTG
TGGCATTTTAGCATGAAAAGTATGGCCAGAGTAAGATTCTAACTTTCAAAGACAATGGAACGGGATACTGAACTGGGTAGTTTTTTTAATATTAATAATGAATGGATGTGCTTAACGATGGAAGTTGCAGCTTGCTTTACCTACAATACAGTTTTGTCATGTTTATAATTACTTTTACTATGATCTGTAGCCAGATGGCT
TTAGCTTTATGTCAGTCATTCTTTATGCAATGCAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGGTGTGTAGTAACCACTACCTGTAATGATAGTTGCACAATGGAATACAGTGTCCTTTAATTGCTGCACCATTTTATCCTTTCCCATTGATGACGTTA
GGCCTGTTTCATTAGGTCATATTTTTTTTTTTGAGGATCAGATTGTTCTTTCATTGACAAGTCATTAGGTTCAGAGAACTGATACTTGGGAGTTATACTAAGATTGTTTAATGATGATATTTTTGGCTTGTTATCTTGGCGTTTGAGGAACCGACTATATTTTATTTGCAGTGGCTGAATAACTGTGTTGGAAAGAAGAA
CTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGgtaaggatgaaagcatctatttgatgatttctaagtagagattcagcagttttaaaaagtgtttggaagaaatatattttcagtgatcacaatttttctatttctatgcactctccatttcttattttggcttgttaatggcagCTTCTGCTTGAAG
GGGGAATAGGTATTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAG
Intron 6 GTAAGGAATT ... TGTTTCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.82 | 27 | 6 | 52 |
| A2 | 63.51 | 27 | 6 | 47 |
| A3 | 69.7 | 30 | 9 | 69 |
| A4 | 64.52 | 33 | 5 | 60 |
| A5 | 54.35 | 21 | 2 | 25 |
| A6 | 74.19 | 8 | 5 | 23 |
| A7 | 59.18 | 20 | 10 | 29 |
| A8 | 100 | 0 | 0 | 7 |
| A9 | 59.18 | 20 | 8 | 29 |
| A10 | 59.74 | 31 | 12 | 46 |
>TRINITY_DN118955_c6_g1_i10 from sample A1 / Example spliced isoformGGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATGTAGGGCAGCGGGCTCGGAGCGCCAAATTCGTGTTTGGTATTTTGGTTGGTCTATTTGTGGAGCAGTAAGGAGGA
CGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGGGGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTTCTTGCTGGCAGTTGCCTT
CTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCGGTCTACACTCCTATGGCATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCA
CTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGCAGGAGCTCTTTTGTTGTACAGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAA
GACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTTGTTTTGCACATTATGCAATGCTGAGGTATTGCATATTGTAATTTCTTTCAGAATTCGGTTATTATGCATTTCGTTATTTGAGGACAAAGTTTATTTTTTCTAGATATCTAGGATTGTATATTTTAATGCCAGATATATCGCAGG
ATAAACATATCTGTAAAAAATGCAGGTAGCTGCTAAACCTCAATAGATGAATCTGTGGAATTGTGCCAGGAACACTTCAAAATTGGGTTTCCCATATGGAAGTAATTTTAGATTACGCTGTTGTCATACTACATTATATTGGATGCTCTGTAGACAGTAGTCTGTGTTGTTGCCATTTGTATGAACCATAGTAGCAAGAT
TTGAAAAAAAACATGAAAAAATCTAGTATGGCTATAATGCAGACCTTAGAAGTAGACATCTCATAAATACTAAAACATGAGTTTTTCAAAATTTACAAAATTTAAAATATACATAAATTCTTCAAAATTTTGAAATAACATTCATTTTTCATTGTGAACCAATTCGAAACATAATATATAACATACCTGTTTAACACAAA
AGTACAAGTGAAACAACATAAAGACAGAAATTTTAAATAATAAGTTAAATGTTCAGGCTCATCATGACCTGAGTATGATGACCTGAGTGTAACGTGCGTGATTTCAAAGAAAAGTCCAAGTAGTAGGAAGCACTTATTAATCAAAGTTAATTCAAAACATTAAAATGGAACAATTAATTTCCATTCAAAAAATCAAGGAG
AAAAATACTCATATTTGTTTGAAATTATTATTTTGTTAATAGTTAAACTATAGAATTAGCATATAAGGAG
>TRINITY_DN118955_c6_g1_i17 from sample A1 / Example unspliced isoform:GGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATGTAGGGCAGCGGGCTCGGAGCGCCAAATTCGTGTTTGGTATTTTGGTTGgtaaggaatttctttttcttttagct
tttgtgcgcttatcctttttcttttttctgttttagcagaaaccctatcagatccgaggctggacaatgcgtacaaatcatgcagcccttgtttcgtagGTCTATTTGTGGAGCAGTAAGGAGGACGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGG
GGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTTCTTGCTGGCAGTTGCCTTCTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCCGTCTACACTCCTATGGC
ATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCACTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGCAGGAGCTCTTTTGTTGTAC
AGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAAGACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTTGTTTTGCACATTATGCAAT
GCTGAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGTATTGCTGTTCTGGTGCGCTGTTTTGTTGA
TAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGCAGTGTGTACAGTGGTGGCATTACTTGCTTCAATTCCATTAGGGGAGCTTTTCTTTTTTCATATTATACTGATTAAAAAGGGAATTACAACGTATGAATATGTTGTAGCAATGAGGTCACAAA
GTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCTTGGTCTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCACCAGGATGAAGTTATTCCACACTTGGGCCCTGGTCAAGTGCCATCCACT
GTTGATCCTGATGATGTGGAAGTTGTAAATAGGATAGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTTGCCAAATTGAACCCAGACGAAGCCATGCGAGCAGTGGCAAAGGCTAGGGAATCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATACTGATTATAGTTCTAGTGG
CAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAACGACTGACAAATGAGCGGATTCAGTCACCTTTGAAATATAGCTATCCTCCAAGTCGTGCTAGCAAAGATGATATCGAAACTGGAACACAAAGCATAAGTAGCTACAGCAGTCCTGGTCATGTAAATGAATCGGCTACACTGAGTCCTCTCC
CACTAGAGCACAGATATGGGCCTACAAGTGGGATGCATCTATCAGCTCCTCTGAATATGACACATGTGGAACCTTTGCCTGCAATAGCAACAAATATGTCAAATATGAGGCCCAATATTCCTATTTACAATTCTCTCTATTCAGGTTTTTCTTCTGCAAGTGATGCTTATTCAGCATTCACCGATGATCATATTGAAGGT
GGACTGTCACAAAATAACATGGTTGTTGGACAAGTCAGTGCAAACCAACCAAATAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTCTGGGACCAAGGTGCTGGAAGGTATGTTTCGTTTGCAGTTCCTGGTAGAAATGAGCTTGTCAGTGAAGTAGGCACAGTTTTTCGTTCACAGGGACACTGGGCTGATGAATC
ATCATCTCCATCGTTACCCTCAGAAAATCTCACTAGGGAGGGTGATATGGACAGAAGATCTTCCTCTCCAAATCTTCAGACATTGCATTCACCCTCTCCTGATCTCCATGTATTTGACCTGCCCTCCCCTAAGCCATATGTGTATCCAAAGAGTTCATCTAGGCTGGGTTCAGTTTCACAACCTGAAAACCTTTTGTACA
GTGGTGAATCTATATTCTACGGGGGTCCTCTTGGTGTACCTTTGATGGAAAGCACTAGGAATGAAAGTTCAAGACCTGGCCTTGAAGGCTCTCAAAAAACATCTAATTCCCATGTTATGCCACCCCAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATCAGTGCCATCTCAATCTCCTGTGTTTGTACCACGGTCT
ATGCAAGCAAACACGTTTTCTCGTTATTCTTCTCAATAGCTCCTGGCATTGTTCTTATTTAAGGTCGTGAACTAAGCTCCTAGTAATTTCAGTGGACTCCTGAAAGGTTCCAATCTCAAGAAATTTATTTTGTTTCTGAGAGACCAGAAAATTAATTCAGTAGACTTTCCACTTTTGGATCATCTCAGGCACTTGGATCA
ACTGCAAGGTTGCACATTTAGCTATAATTTGATGATAGACTTATTGGCGGGGATTACTGTATTATTTGTGGCATTGGTATTTATTACTGGCCGAAGTTTTCTGCCATTAGGTTTCTTATCTGACTTACTGGTAGTGGTTGGCCTCATGACTCCACTTTCTATTTACTGCTGTCAAGGGCTGGAGACAAGTATGGCAGTGG
CAGTCAGAAGCATTAGTGTACCTTCCATTATCCGATTTACTTTTCAAGAAGGTTTTCAAGTAGTGCTAAAGGTGCAGATGCTTGATTTTTTGAGCTGCTGACCATTACATTCATTGTAAATCATTGTACTATTTGTGAACACCATTTGAAATGCGTTCTATATAATGATTTTTATTTTGTTCTGAAGAACTAGTCTTTGC
TACCGTGCAACATTCAGAAAACTAGATTTTACTTAATTGATTCTTTTACTGCAATATCATAAATATCAGGTAGTTTGTAGCTCTAGCTATGATTGGGGTT
Intron 7 GTATATTTAT ... TAAATAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.35 | 106 | 18.8 | 36 |
| A2 | 19.85 | 105 | 25.8 | 26 |
| A3 | 20.31 | 102 | 26.9 | 26 |
| A4 | 18.12 | 122 | 24.8 | 27 |
| A5 | 28 | 72 | 15.1 | 28 |
| A6 | 17.45 | 123 | 20.2 | 26 |
| A7 | 20 | 184 | 42.6 | 46 |
| A8 | 19.59 | 78 | 17 | 19 |
| A9 | 17.05 | 146 | 26.6 | 30 |
| A10 | 19.81 | 170 | 34.7 | 42 |
>TRINITY_DN114773_c0_g1_i4 from sample A2 / Example spliced isoformGTCCAACGGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATAAACCCTATCAGATCCGAGGCTGGACAATGCGTACAAATCATGCAGCCCTTGTTTCGTAGGTCTATTT
GTGGAGCAGTAAGGAGGACGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGGGGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTT
CTTGCTGGCAGTTGCCTTCTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCCGTCTACACTCCTATGGTTTATATTTTCTCCTGTCCTTTCTTCTTTTGGAGCAATTTTAAAAATTATATAGTAGTAAGATCAGTAGTAAGATCGCTGATACCTTTTGCTTCCTTTATTCCTGATA
CTTTCTGAAATTTGAATCTTTTGCAGGCATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCACTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTA
TCCTCTGGCAGGAGCTCTTTTGTTGTACAGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAAGACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGA
TGATGCTTTGTTTTGCACATTATGCAATGCTGAGGTACGTAAGTTCAGTAAACATTGTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCTCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGTA
TTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATAGAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGCAGTGTGTACAGTGGTGGCATTACTTGCTTCAATTCCATTAGGGGAGCTTTTCTTTTTTCATATTATACTGATTAAAAAGGGAATTACAACGTAT
GAATATGTTGTAGCAATGAGGTCACAAAGTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCTTGGTCTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCACCAGGATGAAGTTATTCCACA
CTTGGGCCCTGGTCAAGTGCCATCCACTGTTGATCCTGATGATGTGGAAGTTGTAAATAGGATAGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTTGCCAAATTGAACCCAGATGAAGCCATGCGAGCAGTGGCAAAGGCTAGGGAATCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAG
TCCCTGATACTGATTATAGTTCTAGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAACGACTGACAAATGAGCGGATTCAGTCACCTTTGAAATATAGCTATCCTCCAAGTCGTGCTAGCAAAGATGATATCGAAACTGGAACACAAAGCATAAGTAGCTACAGCAGTCCTGGTCATGTA
AATGAATCGGCTACACTGAGTCCTCTCCCACTAGAGCACAGATATGGGCCTACAAGTGGGATGCATCTATCAGCTCCTCTGAATATGACACATGTGGAACCTTTGCCTGCAATAGCAACAAATATGTCAAATATGAGGCCCAATATTCCTATTTACAATTCTCTCTATTCAGGTTTTTCTTCTGCAAGTGATGCTTATTC
AGCATTCACCGATGATCATATTGAAGGTGGACTGTTACAAAATAACATGGTTGTTGGACAAGTGAGTGCAAACCAACCAAATAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTCTGGGACCAAGGTGCTGGAAGGTATGTTTCGTTTGCAGTTCCTGGTAGAAATGAGCTTGTCAGTGAAGTAGGCACAGTTTTTC
GTTCACAGGGACACTGGGCTGATGAATCATCATCTCCATCGTTACCCTCAGAAAATCTCACTAGGGAGGGTGATATGGACAGAAGATCTTCCTCTCCAAATCTTCAGACATTGCATTCACCCTCTCCTGATCTCCATGTATTTGACCTGCCCTCCCCTAAGCCATATGTGTATCCAAAGAGTTCATCTAGGCTGGGTTCA
GTTTCACAACCTGAAAACCTTTTGTACAGTGGTGAATCTATATTCTACGGGGGTCCTCTTGGTGTACCTTTGATGGAAAGCACTAGGAATGAAAGTTCAAGACCTGGCCTTGAAGGCTCTCAAAAAACATCTAATTCCCATGTTATGCCACCCCAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATCAGTGCCATC
TCAATCTCCTGTGTTTGTACCACGGTCTATGCAAGCAAACACGTTTTCTCGTTATTCTTCTCAATAGCTCCTGGCATTGTTCTTATTTAAGGTCGTGAACTAAGCTCCTAGTAATTTCAGTGGACTCCTGAAAGGTTCCAATCTCAAGAAATTTATTTTGTTTCTGAGAGACCAGAAAATTAATTCAGTAGACTTTCCAC
TTTTGGATCATCTCAGGCACTTGGATCAACTGCAAGGTTGCACATTTAGCTATAATTTGATGATAGACTTATTGGCGGGGATTACTGTATTATTTGTGGCATTGGTATTTATTACTGGCCGAAGTTTTCTGCCATTAGGTTTCTTATCTGACTTACTGGTAGTGGTTGGCCTCATGACTCCACTTTCTATTTACTGCTGT
CAAGGGCTGGAGACAAGTATGGCAGTGGCAGTCAGAAGCATTAGTGTACCTTCCATTATCCGATTTACTTTTCAAGAAGGTTTTCAAGTAGTGCTAAAGGTGCAGATGCTTGATTTTTTGAGCTGCTGACCATTACATTCATTGTAAATCATTGTACTATTTGTGAACACCATTTGAAATGCGTTCTATATAATGATTTT
TATTTTGTTCTGAAGAACTAGTCTTTGCTACCGTGCAACATTCAGAAAACTAGATTTTACTTAATTGATTCTTTTACTGCAATATCATAAATATCAGGTAGTTTGTAGCTCTAGCTATGATTGGGGTTGGGCATGCCTTTTATATATTGCTCCTCAGAGTAATATATTATTGGAGCCTTGGGAATCTAAGTGTATATCTT
GATGTGTTTGGGCCG
>TRINITY_DN114773_c0_g1_i6 from sample A2 / Example unspliced isoform:TTCAAACCAATCATATGGGTTTAGACATGTTCAGTCTCTAAGAAGAGCAAATGGCTAGGTATGGTCATGTAGCTTGCCTAGCATATGTATTGCCATGCATCTATTAATGTGTGGATGCACAGTGATCAGGATACTATTGTTGACTAGTAGAGGTAGGCTCCTAAGTATGCCTCAACAATATTCTGAGGTTTTGTTTATTT
ATGTTGGAAATCATACCTTGTTTGACTCAGTTGCTCTAAATTTTTTTTGACATACCTCTGCCTATTACTCTCACGATATGTTGTCGCAGCTGTAATGATGTCCTGTGCGACTTTTGAGAACTCAAGGGGCAGAGTTGAATGCTCTGTGAATGCTTACTAAGAAGCAATGTAGCTATGTAATATTTGACATTTGTCTGGGG
GAAAACTATTGATGATCAATCATCAGCATCCAATTGCATGGCTGTGCATGTGCAGGTGACTATAATCACTTGGAAATGCATTATGAAAGGCTAGACTTGAATGTTACTTTCAATGATGCAAATGGCCGAGTCTGATTTTATGAAAGTTTTATAATCAAGTCAAGTTGGTTGCAATAGTAGCATGAAAATGGAAGGACAAT
ATAATACTTGAGGATCAACATTAAATTTCCTGTCAAAACGGAACAATCAGGCTTTATAATAAGCTGAGAATAGTGGAAGTATTGATGCATGTTAAAATCCTGGGAGTTTAATTGGGCATGCGCATCCTTCCCTTTATAAATCTAAGGCTGAGTTGATATTATCAGGAACTCAATGTTTCTGATAGTCTAGGGAGATTATT
GGTTAGGGTATGTTTTCAAACCTTGCTTCATTGCTTGAAAGATAAACTTCTTATTAACAACATACTCCTCTCATGTACTTGAAATGAAATATAGTTTGCATTATCTTTGTGTTTGTATCTTTGTCCTCTCATGTCTATGCTTGGCATGCTGTTACTCATTTTTAGTGAACTGAAACTGTATTCTTTCAGAGATTTTCTTG
AAGGATGTAAAGTTTATGTTGTTTGGGGATAACTTCATAGAATGTTATGTTTGGAGTCTGGACCACAGAATGCCTGTACGAAATCCTCAAAGTAAAATTTCTATTAAAAAGTTGAATGATTGCTGAAATCTAGGTGTGGACGTCAAGTCATGGAAGAGTTCTATAAAATATGATAAAGCTAATAACATTCAGACAATATT
AAGGTTCTCTACGGTGGATAACTGGTATAAAAAATTATTCCACTTTTGTCACTGTAGTTGAGTTTGTTGTTGTCTTGGTGCAGGCAGTGTGTACAGTGGTGGCATTACTTGCTTCAATTCCATTAGGGGAGCTTTTCTTTTTTCATATTATACTGATTAAAAAGGTTAGTTTCATTTAAGAACTTGTATTATTCTCTACA
ATTTTTTTAAACTTCTATTCATTACACTGAACATCCTTTAACGAGAATACTGTATAGCAGGGAATTACAACGTATGAATATGTTGTAGCAATGAGGTCACAAAGTGAGCCGCCGGGAATTTCTGCAGAGGGTGATCCACAAAGTATACCTTCTTCTCCAAGTGGCTCAACTGCCACTGGTTTAAGTGGAGGAAGTTCTCT
TGGTCTGCAGTATAAAGGTGCATGGTGTACACCACCTAGAATATTTGTTGAGCACCAGgtatatttatttgttttcaatgatttcaaaaattagttttggtctgtaatttgggcaggttatagtagtacagattgacatatattctgtgttaaatagcagGATGAAGTTATTCCACACTTGGGCCCTGGTCAAGTGCCAT
CCACTGTTGATCCTGATGATGTGGAAGTTGTAAATAGGATAGAAAACAGGATGCAGAAGCGTCCTGTTAGAATCAGTGCTTGGAGGCTTGCCAAATTGAACCCAGATGAAGCCATGCGAGCAGTGGCAAAGGCTAGGGAATCTTCATCTGTTTTGCGTCCAGTTGGTGCTCGAGGAGTCCCTGATACTGATTATAGTTCT
AGTGGCAATGCTAGTAGCAGGAGCAGTATGAGTACAGAATTTGCTGCAAAGAAACGACTGACAAATGAGCGGATTCAGTCACCTTTGAAATATAGCTATCCTCCAAGTCGTGCTAGCAAAGATGATATCGAAACTGGAACACAAAGCATAAGTAGCTACAGCAGTCCTGGTCATGTAAATGAATCGGCTACACTGAGTCC
TCTCCCACTAGAGCACAGATATGGGCCTACAAGTGGGATGCATCTATCAGCTCCTCTGAATATGACACATGTGGAACCTTTGCCTGCAATAGCAACAAATATGTCAAATATGAGGCCCAATATTCCTATTTACAATTCTCTCTATTCAGGTTTTTCTTCTGCAAGTGATGCTTATTCAGCATTCACCGATGATCATATTG
AAGGTGGACTGTTACAAAATAACATGGTTGTTGGACAAGTGAGTGCAAACCAACCAAATAGAATGGCAAGAGAGAACAGGAGGTCATCTGTTTTCTGGGACCAAGGTGCTGGAAGGTATGTTTCGTTTGCAGTTCCTGGTAGAAATGAGCTTGTCAGTGAAGTAGGCACAGTTTTTCGTTCACAGGGACACTGGGCTGAT
GAATCATCATCTCCATCGTTACCCTCAGAAAATCTCACTAGGGAGGGTGATATGGACAGAAGATCTTCCTCTCCAAATCTTCAGACATTGCATTCACCCTCTCCTGATCTCCATGTATTTGACCTGCCCTCCCCTAAGCCATATGTGTATCCAAAGAGTTCATCTAGGCTGGGTTCAGTTTCACAACCTGAAAACCTTTT
GTACAGTGGTGAATCTATATTCTACGGGGGTCCTCTTGGTGTACCTTTGATGGAAAGCACTAGGAATGAAAGTTCAAGACCTGGCCTTGAAGGCTCTCAAAAAACATCTAATTCCCATGTTATGCCACCCCAGGCTTCTCAGGAAACCAGACCATTGCGTGGACAATCAGTGCCATCTCAATCTCCTGTGTTTGTACCAC
GGTCTATGCAAGCAAACACGTTTTCTCGTTATTCTTCTCAATAGCTCCTGGCATTGTTCTTATTTAAGGTCGTGAACTAAGCTCCTAGTAATTTCAGTGGACTCCTGAAAGGTTCCAATCTCAAGAAATTTATTTTGTTTCTGAGAGACCAGAAAATTAATTCAGTAGACTTTCCACTTTTGGATCATCTCAGGCACTTG
GATCAACTGCAAGGTTGCACATTTAGCTATAATTTGATGATAGACTTATTGGCGGGGATTACTGTATTATTTGTGGCATTGGTATTTATTACTGGCCGAAGTTTTCTGCCATTAGGTTTCTTATCTGACTTACTGGTAGTGGTTGGCCTCATGACTCCACTTTCTATTTACTGCTGTCAAGGGCTGGAGACAAGTATGGC
AGTGGCAGTCAGAAGCATTAGTGTACCTTCCATTATCCGATTTACTTTTCAAGAAGGTTTTCAAGTAGTGCTAAAGGTGCAGATGCTTGATTTTTTGAGCTGCTGACCATTACATTCATTGTAAATCATTGTACTATTTGTGAACACCATTTGAAATGCGTTCTATATAATGATTTTTATTTTGTTCTGAAGAACTAGTC
TTTGCTACCGTGCAACATTCAGAAAACTAGATTTTACTTAATTGATTCTTTTACTGCAATATCATAAATATCAGGTAGTTTGTAGCTCTAGCTATGATTGGGGTTGGGCATGCCTTTTATATATTGCTCCTCAGAGTAATATATTATTGGAGCCTTGGGAATCTAAGTGTATATCTTGATGTGTTTGGGCCG
Intron 8 GTGTGTAGTA ... TTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.09 | 92.8 | 6 | 8 |
| A2 | 15.07 | 90.4 | 3 | 16 |
| A3 | 8.54 | 108 | 3 | 10 |
| A4 | 3.74 | 103.6 | 1 | 4 |
| A5 | 11.77 | 83.2 | 2 | 11 |
| A6 | 6.84 | 83.6 | 3 | 6 |
| A7 | 0.9 | 113.4 | 0 | 1 |
| A8 | 0 | 42 | 1 | 0 |
| A9 | 2.61 | 78.4 | 0 | 2 |
| A10 | 0 | 101 | 0 | 0 |
>TRINITY_DN109211_c1_g1_i1 from sample A5 / Example spliced isoformATTCTATCTAATATCTTACGATCTGCTTATTTTTCAATAAAAAAACATTTCATGTCCTTGAAATGTTTTGTGTCCCAGAGAACAAAACTGTTTCCTGTGATTAATCATGGGTAAATATTCAATTGCATGAAAAGTGTCTGCCACATTAATGCTGAATTATCATGCCATGCTTCCAACTAGTGTTTGTTTTGTTATTCAAA
TGATGTGGTTTTCCATTCGGTTATTTTTTCAAACTATGTTTATTAACACTTGTTTTCCATGACTCATTCTTTTAGGTATGCCTAACAATTTACTAAACCGCTCAATAAATTTAATAGTCAGTGATTTTCCTTGTTCCTATTTGTGGCATTTTAGCATGAAAAGTATGGCCAGAGTAAGATTCTAACTTTCAAAGACAATG
GAACGGGATACTGAACTGGGTAGTTTTTTTAAAATAAATAATGAATGGATGTGCTTAACGATGGAAGTTGCAGCTTGCTTTACCTACAATACAGTTTTGTCATGTTTATAATTACTTTTACTATGATCTGTAGCCAGATGGCTTTAGCTTTATGTCAGTCATTCTTTATGCAATGCAGGTACGTAAGTTCAGTAAACATT
GTAGAAGTTGCGACAAATGCGTGGATGGATTTGATCACCATTGTCGGTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCCCTCATGGGTGCCAGTCTTACCTGGCTTCTGCTTGAAGGGGGAATAGGTATTGCTGTTCTGGTGCGCTGTTTTGTTGATAAAAGAGGCACTGAGATACAGATAATA
GAAAAGCTCGGTGATGGATTTTCGCGGGCCCCATATGCTTCTGTTGTAGTATGTCTTCACACAACCTAATAGGATTCATAGGATTGTGTATTTGAATGGTGTTAGCTTGCCGAACTGCTGCACTTTTTTATAATGATAGGCTGAAAATAAGCTTTTGGAGTGGTATATATTTTTCAATAAATTTGTGTAGTACCTGATTT
GTATACCACTTCTGTGATCAGAATTTGAACCTAGCAAGATAGTGTGTTGGTTTACTCCATGATAACATGGTTTAAGTACAAGTGAAGATGGGACCCTAAAAGATGTCTCCCGTCAAACATGAGAATAAAATTTGGATTCTACAAGCATCTGTTTTGCTTTTCATACCTAATGAAATTTTTGGATGCATATTTCCCCT
>TRINITY_DN109211_c1_g1_i8 from sample A5 / Example unspliced isoform:ATGGATTTGATCACCATTGTCGGgtgtgtagtaaccactacctgtaatgatagttgcacaatggaatacagtgtcctttaattgctgcaccattttatcctttcccattgatgacgttaggcctatttcattaggtcatattttttttttttgaggatcagattgttctttcattgacaagtcattaggttcagagaact
gatacttgggagttatactaagattgtttaatgatgatatttttggcttgttatcttggcgtttgaggaaccgactatattttatttgcagTGGCTGAATAACTGTGTTGGAAAGAAGAACTACATGACGTTTTTTGCCCTCATGGGTGCCAGTCTTACCTGGGTAAGGATGAAAGCATCTATTTGATGATTTCTAAGTA
GAGATTCAGCAGTTT
Intron 9 GTAGGGCAGC ... GTTTTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.45 | 12 | 7 | 13 |
| A2 | 41.14 | 20.8 | 11 | 18 |
| A3 | 43.35 | 23.1 | 17 | 18 |
| A4 | 41.94 | 18 | 3 | 23 |
| A5 | 41.12 | 7.9 | 1 | 10 |
| A6 | 47.37 | 10 | 0 | 18 |
| A7 | 59.31 | 8.9 | 11.9 | 14 |
| A8 | 50 | 4 | 2 | 6 |
| A9 | 48.49 | 13.8 | 9.9 | 16 |
| A10 | 41.76 | 32.2 | 18 | 28 |
>TRINITY_DN118955_c6_g1_i4 from sample A1 / Example spliced isoformGGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATAAACCCTATCAGATCCGAGGCTGGACAATGCGTACAAATCATGCAGCCCTTGTTTCGTAGGTCTATTTGTGGAGC
AGTAAGGAGGACGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGGGGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGT
>TRINITY_DN118955_c6_g1_i11 from sample A1 / Example unspliced isoform:GGTGTTTCTCTCTCTCTTTGTATCTTTGCAACTCCGCTGGACTAACTGAGCCGGAGAAAAGCGGTTTCTCTGCAGCTCGGGGCCGTTGGCCGGCTCGGCTGATAGTGCGGAGGTTACTGACAGATgtagggcagcgggctcggagcgccaaattcgtgtttggtattttggttggtaaggaatttctttttcttttagct
tttgtgcgcttatcctttttcttttttctgttttagcagAAACCCTATCAGATCCGAGGCTGGACAATGCGTACAAATCATGCAGCCCTTGTTTCGTAGGTCTATTTGTGGAGCAGTAAGGAGGACGCTTGGGCCTTTTTTTCTTTTGTTCGAAGCAAAAGGACTTTGATTCTGGAAACGCATGCCGTCAGTGCTGCGGG
GGCGTGCAAGCTTTGCACGCCATTCTTTGTGAAGGCACGATGGTTCGTCGCCATGGCTGGCAGCTGCCCGCTCACACTTTTCAGGTTGTAGCTATTACAGTGTTCTTCTTGCTGGCAGTTGCCTTCTATGCATTTTTTGCACCCTTTTTAGGCAGTGATGCATTGGAGTATGCAGCTATTGCCGTCTACACTCCTATGGC
ATTAGCCGTTTTCCTTCTTTATATTCGCTGTTCTGCCATTGATCCTGCAGATCCTGGAATTTTATTGAACTTTGGTCATAAATCTTTTTCTACAAAGGAGAAGAAACAAGAATTTTCATCAAGCACTTCAATGTTAAACATAGGTCAAGGAGTTAAGCAATCTCCTGCCTTATCCTCTGGCAGGAGCTCTTTTGTTGTAC
AGTCTGGGAATAAACCTGAAGCTGGGAGTATGACATGGATGGCCCCTGAAGAGACTGGCAAGAAGAGCTCTCCACTTTGTTTCGCGAATGTCGTTGCATGCTTTCTTTGTGGGTGGTTTGTTAAAGACGATAGCTGTCAAAACGAAGGGCTCCAACCACAAGAGGCAGAAGATGATGCTTTGTTTTGCACATTATGCAAT
GCTGAGGTATTGCATATTGTAATTTCTTTCAGAATTCGGTTATTATGCATTTCGTTATTTGAGGACAAAGTTTATTTTTTCTAGATATCTAGGATTGTATATTTTAATGCCAGATATATCGCAGGATAAACATATCTGTAAAAAATGCAGGTAGCTGCTAAACCTCAATAGATGAATCTGTGGAATTGTGCCAGGAACAC
TTCAAAATTGGGTTTCCCATATGGAAGTAATTTTAGATTACGCTGTTGTCATACTACATTATATTGGATGCTCTGTAGACAGTAGTCTGTGTTGTTGCCATTTGTATGAACCATAGTAGCAAGATTTGAAAAAAAACATGAAAAAATCTAGTATGGCTATAATGCAGACCTTAGAAGTAGACATCTCATAAATACTAAAA
CATGAGTTTTTCAAAATTTACAAAATTTAAAATATACATAAATTCTTCAAAATTTTGAAATAACATTCATTTTTCATTGTGAACCAATTCGAAACATAATATATAACATACCTGTTTAACACAAAAGTACAAGTGAAACAACATAAAGACAGAAATTTTAAATAATAAGTTAAATGTTCAGGCTCATCATGACCTGAGTA
TGATGACCTGAGTGTAACGTGCGTGATTTCAAAGAAAAGTCCAAGTAGTAGGAAGCACTTATTAATCAAAGTTAATTCAAAACATTAAAATGGAACAATTAATTTCCATTCAAAAAATCAAGGAGAAAAATACTCATATTTGTTTGAAATTATTATTTTGTTAATAGTTAAACTATAGAATTAGCATATAAGGAG