NA ----> NA
Intron 1 GTATGGTTGT ... TAACTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 1 | 1 | 4.5 |
| A2 | 7.5 | 5 | 0.6 | 0 |
| A3 | 65.72 | 2 | 4.2 | 0 |
| A4 | 32.76 | 3 | 1.9 | 0 |
| A5 | 45.55 | 2 | 1.7 | 2.2 |
| A6 | 4.62 | 20 | 1.2 | 3.7 |
| A7 | 6.76 | 32.2 | 2.4 | 9.5 |
| A8 | 3.84 | 53.5 | 2.3 | 21.8 |
| A9 | 10.02 | 33.9 | 3.9 | 12 |
| A10 | 4.17 | 21 | 0.9 | 7.3 |
>TRINITY_DN42223_c0_g1_i2 from sample A7 / Example spliced isoformTTGGTAACTGCATTATTGAATCTCTATTGAAGGGATCTCTTCCTGTTATCGTCGATTATGATTGTCTTTATCATTTTTGTCTTACTGTTAGAAGACCTAATTAGTAATTACGTAACTTCCTTGAATGCTAGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTTGAAACTTTGAAAGAGCTATTCCACAAA
CGATTGGAGGAATGCATGGTAATGTCCTCAAGTGTGCTTGTCACAATAGCATAATGGTCTAGGGTATGCTCCACCCGTGGTAATGACTTAAATTTCCAGAAAAAATAGTCATAATTTGTCCACTTACCATGGGTTTCTTTATAGATTATTCTGAAACCGAGGAAAATTACAAATACTGTGCACATGAATTTTTTCTAATA
TATTTTTTCACAGGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCTGTGCGCAGGATTGAAACCATGACTTGTTTGTT
TGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGATTTTTCTAATTGTGCAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTATTAGAGTAGTACTTACATTGTTGCACAAATGCA
GAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGTAATCATCTCGCATATAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTG
>TRINITY_DN42223_c0_g1_i8 from sample A7 / Example unspliced isoform:TTGGTAACTGCATTATTGAATCTCTATTGAAGGGATCTCTTCCTGTTATCGTCGATTATGATTGTCTTTATCATTTTTGTCTTACTGTTAGAAGACCTAATTAGTAATTACGTAACTTCCTTGAATGCTAGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTTGAAACTTTGAAAGAGCTATTCCACAAA
CGATTGGAGGAATGCATGGTAATGTCCTCAAGTGTGCTTGTCACAATAGCATAATGGTCTAGGGTATGCTCCACCCGTGGTAATGACTTAAATTTCCAGAAAAAATAGTCATAATTTGTCCACTTACCATGGGTTTCTTTATAGATTATTCTGAAACCGAGGAAAATTACAAATACTGTGCACATGAATTTTTTCTAATA
TATTTTTTCACAGGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGgtatggttgtcttaaactattttattttatattacgtcaggattaacatggaaccgctaaaagtggtcatagc
tgtcattacttggggtttgaatatttgagttgttatgcttattcatgtcttctaatcaatttttaacttacagAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCTGTGCGCAGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGATTTTTCTAATTGTG
CAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTATTAGAGTAGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGTAATCATCTCGCATA
TAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTG
Intron 2 GTAATGTCCT ... TTTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 2 |
| A2 | 20.48 | 3.9 | 0.1 | 1.4 |
| A3 | 50 | 2 | 1.7 | 2 |
| A4 | 43.33 | 5 | 3.9 | 3.9 |
| A5 | 53.33 | 0 | 0 | 0.5 |
| A6 | 7.6 | 25.7 | 0.1 | 2.3 |
| A7 | 16.59 | 27.8 | 3.1 | 5.5 |
| A8 | 20.4 | 31.5 | 3.8 | 9.1 |
| A9 | 18.95 | 20.6 | 2 | 5.3 |
| A10 | 35.24 | 11.9 | 2.7 | 6.5 |
>TRINITY_DN96686_c0_g1_i3 from sample A4 / Example spliced isoformAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATGGATGGGACGGATGTTAGACGTCATGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTT
GAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCT
GTGCGCAGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGATTTTTCTAATTGTGCAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTAT
TAGAGTAGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGTAATCATCTCGCATATAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTGAGGGAAGTATAACAAAAACCAATACAAACAGAATCGCGAATGACACAATTTGTTAACGTA
>TRINITY_DN96686_c0_g1_i5 from sample A4 / Example unspliced isoform:AGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATGGATGGGACGGATGTTAGACGTCATGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTT
GAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGgtaatgtcctcaagtgtgcttgtcacaatagcataatggtctagggtatgctccacccgtggtaatgacttaaatttccagaaaaaatagtcataatttgtccacttaccatgggtttctttatagattattctgaaaccgaggaaaattacaaa
tactgtgcacatgaattttttctaatatattttttcacagGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGGTATGGTTGTCTTAAACTATTTTATTTTAT
Intron 3 GTAATGACTT ... TTTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 2 |
| A2 | 33.33 | 3 | 0 | 3 |
| A3 | 100 | 0 | 1 | 2 |
| A4 | 73.33 | 2 | 6 | 5 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 29.41 | 6 | 0 | 5 |
| A7 | 83.33 | 1 | 4 | 6 |
| A8 | 35.71 | 18 | 4 | 16 |
| A9 | 47.83 | 6 | 2 | 9 |
| A10 | 73.33 | 2 | 4 | 7 |
>TRINITY_DN40125_c0_g1_i6 from sample A8 / Example spliced isoformCAATGAGTTTCCGCACTACCTTCAATTACGTTTATGTGCTTCAAATTCTCATCGCTGAAGTCCGCTCTGGAATCCCAGTGTTCTGAGGTACGGCGGTCTTCAGACACCACTGTGTTGTGATGGTGTGCTGTGAAAATCAATCAAGAGATGGATAGGTTTGCTTGGTTGGATGCCCAAAAATGGTGGATTTCTCCATGGCC
AGGGTGTTCTCAATGCTCCGCCTGCAGTGATCAGAGATTACTCTTCTGCAGCAAAATTAAATGGTTCTTCCGAGGATTCGCGTCATTTCATGTCAAAGCAAGAGAAGGTTCAAATGCCCACCAAGACACTCCGTATTCTCCTGAAGCGGCTCACCTCTTCTTCTCTGCTCATTCAACGCTATCTGATCCAGCCCAACTGG
CATTGCGCTTAGGAGTTCTTATGGAAAAGCCCCAGGAGATGCAGGGTTTCTCTGTTTATGATATCAGTGGAAGGGAAAAACTGATGCTGACATTTGACAGTTCGAATCCATTTATTTTAGAAATACCACAGGTTCAGAATTTTTCACTTTGCACCCCATATGTTTCCTGTTCAGCTTGTCAAACACAAAAGGCTACAAGG
AAGGAAGATAGTGAGCAAATTCACTGTTGTGTTTGCCAGCCACTGCCCAGCCATGTTACTTTGAATTTGAGGCATGTGTCACTCAATATATATGCCGACGAGGAATCTGATGAAAGGTTTCCGAGTACTATCTCATTGAACCAAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGG
TGAGTTTTTCTGTTATGCATCCCTTCATAGAAGCATGGGCAAGATTTTTCTTGTCATTTTTCTATTATCCATTAATGTATTGTGCTATATTCAGGGCCAAATATAATAACTACTAGTTAGCAAAGGGGTTGCAGTCTTAATGTTGCAAGTGAGTTTTTTATGTAGACATGTATTTTTATTTCTGGCACCAAGTCCAGTGA
ATTTGTATTTCTGCTGTAACTATAGATAACAAGTCAAGAGACGCCAAGAAAAACGAGGGCAAGCATGTAGAATTACCAACTAATGCAAGGGATGTTTTGAGTAATACCAATATGCTTCTGCAGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATG
GATGGGACGGATGTTAGACGTCATGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTTGAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGTAATGTCCTCAAGTGTGCTTGTCACAATAGCATAATGGTCTAGGGTATGCTCCACCCGTGGAAAAAGAGAAACTTGAGATTAAAAAG
ACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCTGTGCGCAGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGA
TTTTTCTAATTGTGCAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTATTAGAGTAGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGT
AATCATCTCGCATATAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTGAGGGAAGTATAACAAAAACCAATACAAACAGAATCGCGAATGACACAATTTGTTAACGTAGGCATCATTTGTTGTGTTCCATAAAAGTATGCATGACAAAATATAGATAACAATCTTAGGAAATTGATCACACTGTACAGAAGT
TTAATCATTTTATTCGGGTACATCCAATTCCTAACCATGAAGCTGCCCATTATGTCTGATATATTGAGCCCTGTCTGAGGGAAATATCATTCACAATCTATAGAGATCTTAGGGAACTAACTGATATCGTGTAATATATTTTGCATAAAATGATTTCATTATAATATGACTGCATTAGCATTT
>TRINITY_DN40125_c0_g1_i2 from sample A8 / Example unspliced isoform:CAATGAGTTTCCGCACTACCTTCAATTACGTTTATGTGCTTCAAATTCTCATCGCTGAAGTCCGCTCTGGAATCCCAGTGTTCTGAGGTACGGCGGTCTTCAGACACCACTGTGTTGTGATGGTGTGCTGTGAAAATCAATCAAGAGATGGATAGGTTTGCTTGGTTGGATGCCCAAAAATGGTGGATTTCTCCATGGCC
AGGGTGTTCTCAATGCTCCGCCTGCAGTGATCAGAGATTACTCTTCTGCAGCAAAATTAAATGGTTCTTCCGAGGATTCGCGTCATTTCATGTCAAAGCAAGAGAAGGTTCAAATGCCCACCAAGACACTCCGTATTCTCCTGAAGCGGCTCACCTCTTCTTCTCTGCTCATTCAACGCTATCTGATCCAGCCCAACTGG
CATTGCGCTTAGGAGTTCTTATGGAAAAGCCCCAGGAGATGCAGGGTTTCTCTGTTTATGATATCAGTGGAAGGGAAAAACTGATGCTGACATTTGACAGTTCGAATCCATTTATTTTAGAAATACCACAGGTTCAGAATTTTTCACTTTGCACCCCATATGTTTCCTGTTCAGCTTGTCAAACACAAAAGGCTACAAGG
AAGGAAGATAGTGAGCAAATTCACTGTTGTGTTTGCCAGCCACTGCCCAGCCATGTTACTTTGAATTTGAGGCATGTGTCACTCAATATATATGCCGACGAGGAATCTGATGAAAGGTTTCCGAGTACTATCTCATTGAACCAAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGG
TGAGTTTTTCTGTTATGCATCCCTTCATAGAAGCATGGGCAAGATTTTTCTTGTCATTTTTCTATTATCCATTAATGTATTGTGCTATATTCAGGGCCAAATATAATAACTACTAGTTAGCAAAGGGGTTGCAGTCTTAATGTTGCAAGTGAGTTTTTTATGTAGACATGTATTTTTATTTCTGGCACCAAGTCCAGTGA
ATTTGTATTTCTGCTGTAACTATAGATAACAAGTCAAGAGACGCCAAGAAAAACGAGGGCAAGCATGTAGAATTACCAACTAATGCAAGGGATGTTTTGAGTAATACCAATATGCTTCTGCAGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATG
GATGGGACGGATGTTAGACGTCATGGTTGGTAACTGCATTATTGAATCTCTATTGAAGGGATCTCTTCCTGTTATCGTCGATTATGATTGTCTTTATCATTTTTGTCTTACTGTTAGAAGACCTAATTAGTAATTACGTAACTTCCTTGAATGCTAGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTTG
AAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGTAATGTCCTCAAGTGTGCTTGTCACAATAGCATAATGGTCTAGGGTATGCTCCACCCGTGgtaatgacttaaatttccagaaaaaatagtcataatttgtccacttaccatgggtttctttatagattattctgaaaccgaggaaaattacaaat
actgtgcacatgaattttttctaatatattttttcacagGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCTGTGCGC
AGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGATTTTTCTAATTGTGCAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTATTAGAGT
AGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGTAATCATCTCGCATATAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTGAGGGAAGTATAACAAAAACCAATACAAACAGAATCGCGAATGACACAATTTGTTAACGTAGGCATCATTTGTTGTGTT
CCATAAAAGTATGCATGACAAAATATAGATAACAATCTTAGGAAATTGATCACACTGTACAGAAGTTTAATCATTTTATTCGGGTACATCCAATTCCTAACCATGAAGCTGCCCATTATGTCTGATATATTGAGCCCTGTCTGAGGGAAATATCATTCACAATCTATAGAGATCTTAGGGAACTAACTGATATCGTGTAA
TATATTTTGCATAAAATGATTTCATTATAATATGACTGCATTAGCATTT
Intron 4 GTGAGTTTTT ... GCTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 4 | 3 | 1 |
| A2 | 83.33 | 1 | 0 | 10 |
| A3 | 63.64 | 4 | 1 | 13 |
| A4 | 61.54 | 5 | 6 | 10 |
| A5 | 50 | 1 | 2 | 0 |
| A6 | 50.31 | 9.5 | 11 | 8 |
| A7 | 35.48 | 30 | 10 | 23 |
| A8 | 43.33 | 19 | 9 | 20 |
| A9 | 35.78 | 22.5 | 6 | 19 |
| A10 | 32.58 | 14.5 | 6 | 8 |
>TRINITY_DN40624_c0_g1_i8 from sample A9 / Example spliced isoformAATGAGTTTCCGCACTACCTTCAATTACGTTTATGTGCTTCAAATTCTCATCGCTGAAGTCCGCTCTGGAATCCCAGTGTTCTGAGGTCCGGCGGTCTTCAGACACCACTGTGTTGTCATGGTGTGCTGTGAAAATCAATCAAGAGATGGATAGGTTTGCTTGGTTGGATGCCCAAAAATGGTGGATTTCTCCATGGCCA
GGGTGTTCTCAATGCTCCGCCTGCAGTGATCAGAGATTACTCTTCTGCAGCAAAATTAAATGGTTCTTCCGAGGATTCGCGTCATTTCATGTCAAAGCAAGAGAAGGTTCAAATGCCCACCAAGACACTCCGTATTCTCCTGAAGCGGCTCACCTCTTCTTCTCTGCTCATTCAACGCTATCTGATCCAGCCCAACTGGC
ATTGCGCTTAGGAGTTCTTATGGAAAAGCCCCAGGAGATGCAGGGTTTCTCTGTTTATGATATCAGTGGAAGGGAAAAACTGATGCTGACATTTGACAGTTCGAATCCATTTATTTTAGAAATACCACAGGTTCAGAATTTTTCACTTTGCACCCCATATGTTTCCTGTTCAGCTTGTCAAACACAAAAGGCTACAAGGA
AGGAAGATAGTGAGCAAATTCACTGTTGTGTTTGCCAGCCACTGCCCAGCCATGTTACTTTGAATTTGAGGCATGTGTCACTCAATATATATGCCGACGAGGAATCTGATGAAAGGTTTCCGAGTACTATCTCATTGAACCAAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGAA
ATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATGGATGGGACGGATGTTAGACGTCATGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTTGAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGAAAAAGAGAAAC
TTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCTGTGCGCAGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAG
CCTTGTGACTTCGATTTTTCTAATTGTGCAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTATTAGAGTAGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAG
CTTACCTTCGAAGTAATCATCTCGCATATAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTGAGGGAAGTATAACAAAAACCAATACAAACAGAATCGCGAATGACACAATTTGTTAACGTAGGCATCATTTGTTGTGTTCCATAAAAGTATGCATGACAAAATATAGATAACAATCTTAGGAAATTGATCA
CACTGTACAGAAGTTTAATCATTTTATTCGGGTACATCCAATTCCTAACCATGAAGCTGCCCATTATGTCTGATATATTGAGCCCTGTCTGAGGGAAATATCATTCACAATCTATAGAGATCTTAGGGAACTAACTGATATCGTGTAATATATTTTGCATAAAATGATTTCATTATAATATGACTGCATTAGCATTTTCA
CA
>TRINITY_DN40624_c0_g1_i2 from sample A9 / Example unspliced isoform:AATGAGTTTCCGCACTACCTTCAATTACGTTTATGTGCTTCAAATTCTCATCGCTGAAGTCCGCTCTGGAATCCCAGTGTTCTGAGGTCCGGCGGTCTTCAGACACCACTGTGTTGTCATGGTGTGCTGTGAAAATCAATCAAGAGATGGATAGGTTTGCTTGGTTGGATGCCCAAAAATGGTGGATTTCTCCATGGCCA
GGGTGTTCTCAATGCTCCGCCTGCAGTGATCAGAGATTACTCTTCTGCAGCAAAATTAAATGGTTCTTCCGAGGATTCGCGTCATTTCATGTCAAAGCAAGAGAAGGTTCAAATGCCCACCAAGACACTCCGTATTCTCCTGAAGCGGCTCACCTCTTCTTCTCTGCTCATTCAACGCTATCTGATCCAGCCCAACTGGC
ATTGCGCTTAGGAGTTCTTATGGAAAAGCCCCAGGAGATGCAGGGTTTCTCTGTTTATGATATCAGTGGAAGGGAAAAACTGATGCTGACATTTGACAGTTCGAATCCATTTATTTTAGAAATACCACAGGTTCAGAATTTTTCACTTTGCACCCCATATGTTTCCTGTTCAGCTTGTCAAACACAAAAGGCTACAAGGA
AGGAAGATAGTGAGCAAATTCACTGTTGTGTTTGCCAGCCACTGCCCAGCCATGTTACTTTGAATTTGAGGCATGTGTCACTCAATATATATGCCGACGAGGAATCTGATGAAAGGTTTCCGAGTACTATCTCATTGAACCAAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGgt
gagtttttctgttatgcatcccttcatagaagcatgggcaagatttttcttgtcatttttctattatccattaatgtattgtgctatattcagggccaaatataataactactagttagcaaaggggttgcagtcttaatgttgcaagtgagttttttatgtagacatgtatttttatttctggcaccaagtccagtgaa
tttgtatttctgctgtaactatagataacaagtcaagagacgccaagaaaaacgagggcaagcatgtagaattaccaactaatgcaagggatgttttgagtaataccaatatgcttctgcagAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATGG
ATGGGACGGATGTTAGACGTCATGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTTGAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTC
CACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCTGTGCGCAGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGATTTTTCTAATTGTGCAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTA
AATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTATTAGAGTAGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGTAATCATCTCGCATATAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTGAGGGAA
GTATAACAAAAACCAATACAAACAGAATCGCGAATGACACAATTTGTTAACGTAGGCATCATTTGTTGTGTTCCATAAAAGTATGCATGACAAAATATAGATAACAATCTTAGGAAATTGATCACACTGTACAGAAGTTTAATCATTTTATTCGGGTACATCCAATTCCTAACCATGAAGCTGCCCATTATGTCTGATAT
ATTGAGCCCTGTCTGAGGGAAATATCATTCACAATCTATAGAGATCTTAGGGAACTAACTGATATCGTGTAATATATTTTGCATAAAATGATTTCATTATAATATGACTGCATTAGCATTTTCACA
Intron 5 GTTGGTAACT ... TGAATGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 4 | 2.1 |
| A2 | 62.29 | 3.8 | 5 | 0 |
| A3 | 30.77 | 9 | 4 | 2.1 |
| A4 | 56.34 | 5.4 | 7 | 2.6 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 14.94 | 20 | 3 | 3.1 |
| A7 | 27.26 | 35.3 | 13 | 2.6 |
| A8 | 27.82 | 26 | 10 | 2 |
| A9 | 7.22 | 13.4 | 1 | 2.7 |
| A10 | 7.48 | 12.7 | 1 | 2.6 |
>TRINITY_DN96686_c0_g1_i5 from sample A4 / Example spliced isoformAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATGGATGGGACGGATGTTAGACGTCATGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTT
GAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGTAATGTCCTCAAGTGTGCTTGTCACAATAGCATAATGGTCTAGGGTATGCTCCACCCGTGGTAATGACTTAAATTTCCAGAAAAAATAGTCATAATTTGTCCACTTACCATGGGTTTCTTTATAGATTATTCTGAAACCGAGGAAAATTACAAA
TACTGTGCACATGAATTTTTTCTAATATATTTTTTCACAGGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGGTATGGTTGTCTTAAACTATTTTATTTTAT
>TRINITY_DN96686_c0_g1_i7 from sample A4 / Example unspliced isoform:CTTCAATTACGTTTATGTGCTTCAAATTCTCATCGCTGAAGTCCGCTCTGGAATCCCAGTGTTCTGAGGTACGGCGGTCTTCAGACACCACTGTGTTGTGATGGTGTGCTGTGAAAATCAATCAAGAGATGGATAGGTTTGCTTGGTTGGATGCCCAAAAATGGTGGATTTCTCCATGGCCAGGGTGTTCTCAATGCTCC
GCCTGCAGTGATCAGAGATTACTCTTCTGCAGCAAAATTAAATGGTTCTTCCGAGGATTCGCGTCATTTCATGTCAAAGCAAGAGAAGGTTCAAATGCCCACCAAGACACTCCGTATTCTCCTGAAGCGGCTCACCTCTTCTTCTCTGCTCATTCAACGCTATCTGATCCAGCCCAACTGGCATTGCGCTTAGGAGTTCT
TATGGAAAAGCCCCAGGAGATGCAGGGTTTCTCTGTTTATGATATCAGTGGAAGGGAAAAACTGATGCTGACATTTGACAGTTCGAATCCATTTATTTTAGAAATACCACAGGTTCAGAATTTTTCACTTTGCACCCCATATGTTTCCTGTTCAGCTTGTCAAACACAAAAGGCTACAAGGAAGGAAGATAGTGAGCAAA
TTCACTGTTGTGTTTGCCAGCCACTGCCCAGCCATGTTACTTTGAATTTGAGGCATGTGTCACTCAATATATATGCCGACGAGGAATCTGATGAAAGGTTTCCGAGTACTATCTCATTGAACCAAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGATAACAAGTCAAGAGACGCC
AAGAAAAACGAGGGCAAGCATGTAGAATTACCAACTAATGCAAGGGATGTTTTGAGTAATACCAATATGCTTCTGCAGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATGGATGGGACGGATGTTAGACGTCATGgttggtaactgcattattga
atctctattgaagggatctcttcctgttatcgtcgattatgattgtctttatcatttttgtcttactgttagaagacctaattagtaattacgtaacttccttgaatgctagGCCCAACATGCTGGTC
Intron 6 GTGAGTTTTT ... GTAACTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 2 | 3 | 1 |
| A2 | 100 | 0 | 0 | 2 |
| A3 | 38.46 | 4 | 1 | 4 |
| A4 | 42.86 | 8 | 6 | 6 |
| A5 | 100 | 0 | 2 | 1 |
| A6 | 35.48 | 10 | 11 | 0 |
| A7 | 22.39 | 26 | 10 | 5 |
| A8 | 30 | 14 | 9 | 3 |
| A9 | 21.13 | 28 | 6 | 9 |
| A10 | 18.64 | 24 | 6 | 5 |
>TRINITY_DN42223_c0_g1_i6 from sample A7 / Example spliced isoformCTTTTACTGCTATGTACGTTAAAATAGTTCTCATCTTGCATGCTACTTAAATGACATCTGGCTCCTTTTTTACGATTGAACATGCTCTTACAGTGTTTGCCAGCCACTGCCCAGCCATGTTACTTTGAATTTGAGGCATGTGTCACTCAATATATATGCCGACGAGGAATCTGATGAAAGGTTTCCGAGTACTATCTCAT
TGAACCAAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTCAAGTGATAACAAGTCAAGAGACGCCAAGAAAAACGAGGGCAAGCATGTAGAATTACCAACTAATGCAAGGGATGTTTTGAGTAATACCAATATGCTTCTGCAGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCC
ATTAAGGCTGTGGAAGTCTGCAGTGCGGATCCCCCATGGATGGGACGGATGTTAGACGTCATGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATCAACTTGAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAA
ATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAGCTTCTGTGCGCAGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGATTTTTCTAATTGTGCAATGCTAC
ATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGTTGTATTAGAGTAGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGTAATCATCTCGCATATAAAAAATA
TTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTG
>TRINITY_DN42223_c0_g1_i1 from sample A7 / Example unspliced isoform:AGGCTCCAATGAGTTTCCGCACTACCTTCAATTACGTTTATGTGCTTCAAATTCTCATCGCTGAAGTCCGCTCTGGAATCCCAGTGTTCTGAGGTCCGGCGGTCTTCAGACACCACTGTGTTGTGATGGTGTGCTGTGAAAATCAATCAAGAGATGGATAGGTTTGCTTGGTTGGATGCCCAAAAATGGTGGATTTCTCC
ATGGCCAGGGTGTTCTCAATGCTCCGCCTGCAGTGATCAGAGATTACTCTTCTGCAGCAAAATTAAATGGTTCTTCCGAGGATTCGCGTCATTTCATGTCAAAGCAAGAGAAGGTTCAAATGCCCACCAAGACACTCCGTATTCTCCTGAAGCGGCTCACCTCTTCTTCTCTGCTCATTCAACGCTATCTGATCCAGCCC
AACTGGCATTGCGCTTAGGAGTTCTTATGGAAAAGCCCCAGGAGATGCAGGGTTTCTCTGTTTATGATATCAGTGGAAGGGAAAAACTGATGCTGACATTTGACAGTTCGAATCCATTTATTTTAGAAATACCACAGGTTCAGAATTTTTCACTTTGCACCCCATATGTTTCCTGTTCAGCTTGTCAAACACAAAAGGCT
ACAAGGAAGGAAGATAGTGAGCAAATTCACTGTTGTGTTTGCCAGCCACTGCCCAGCCATGTTACTTTGAATTTGAGGCATGTGTCACTCAATATATATGCCGACGAGGAATCTGATGAAAGGTTTCCGAGTACTATCTCATTGAACCAAGTCATGGAGATACTTGATAAGATTTTTCAGGAGTCAAGGCAAGTGTGTTC
AAGTGgtgagtttttctgttatgcatcccttcatagaagcatgggcaagatttttcttgtcatttttctattatccattaatgtattgtgctatattcagggccaaatataataactactagttagcaaaggggttgcagtcttaatgttgcaagtgagttttttatgtagacatgtatttttatttctggcaccaagtc
cagtgaatttgtatttctgctgtaactatagATAACAAGTCAAGAGACGCCAAGAAAAACGAGGGCAAGCATGTAGAATTACCAACTAATGCAAGGGATGTTTTGAGTAATACCAATATGCTTCTGCAGAAATACTTGAATGGCATTGATTGTATCAGTGAATGTGCCATTAAGGCTGTGGAAGTCTGCAGTGCGGATCC
CCCATGGATGGGACGGATGTTAGACGTCATGGTTGGTAACTGCATTATTGAATCTCTATTGAAGGGATCTCTTCCTGTTATCGTCGATTATGATTGTCTTTATCATTTTTGTCTTACTGTTAGAAGACCTAATTAGTAATTACGTAACTTCCTTGAATGCTAGGCCCAACATGCTGGTCATCATTGTTTGGAACTTGATC
AACTTGAAACTTTGAAAGAGCTATTCCACAAACGATTGGAGGAATGCATGGAAAAAGAGAAACTTGAGATTAAAAAGACATGGAGAGTGAATTCTCGAAAATTTATCCAACAACAGAAGATGCAAGACTCTGCAACGTCCACATTAGAACTTTTAAAGCAAGAGAGGAAATGCATAGAAAAAGCTTCGTTATGGGTGGAG
CTTCTGTGCGCAGGATTGAAACCATGACTTGTTTGTTTGCGGATTACTAATTTGTAGATACAGCCTTGTGACTTCGATTTTTCTAATTGTGCAATGCTACATTTTTTCAATTCCAGAAAATTATTATTTTGAGAATGTAAATTGGTTTTGCATGGATTCTTAATGCTTCACAATTCTGGAGGAAGCCTCAATCCTCTGGT
TGTATTAGAGTAGTACTTACATTGTTGCACAAATGCAGAGCAACCTGCGTTGAGAAACAAAAGCTTACCTTCGAAGTAATCATCTCGCATATAAAAAATATTTTGCTCCGCTCGCTCTTGAGTAAAAATCGTG