sp|Q9ZPW2|APC10_ARATH ----> Anaphase-promoting complex subunit 10

Intron 1 GTCTGATGGA ... TGATTTAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	55.78	37.9	69	26.1
A2	65.07	23.4	56	30.1
A3	52.83	43.6	76	21.7
A4	60.58	21	41	23.2
A5	58.85	11.3	22	9.6
A6	62.37	167.9	367	183
A7	63.16	171.1	408.2	169.8
A8	59.82	196.7	380	200.5
A9	63.66	153.9	320	207.8
A10	64.17	127.4	311	141.7

>TRINITY_DN106714_c0_g1_i4 from sample A2 / Example spliced isoform

CTGCATCCATCCGCCGCCCATACACACTCAAAAGCCTATACGATTCAAAGGCAAGGCGGAACTATTTAAAATTCAAAATCGCCGCGAACCCGATTTGAGATAAGAATTCAGAGGCATATTGGGGTTTGATTTACTCTAAGGTTCCTCTTACTCATTGGACTGCTCGAGTTAGCAGAAAAAATGTCAGTAGAAGTAGCAGA
AGGAGAGGAAGTTCTAAAGCCGGACTCGGCCGTGATGCGGGAGATGAGCAAGAAGGCCGCTTGGAGTGTGAGCTCCTGCAAACCTGGCAATGGCGTCAACCTTCTCAGAGATGATAATCTCGACACCTTTTGGCAGAAATTAAGTTGGTGGAACTAGTGGAGCCTGTTGGTTGGACCTATATCCCGCTATGTGCAAATGA
GTCAAGGGAAGTATTTGTACAAACATTTATGTTGCAGCTTGCTGTCTTATCTAATCATCAAAATGGAAGAGATACCCATATTCGCCAAATAAAAGTTTATGGGCCCTATCCAAATCCAGTTCCCCTCCAGGAATTCCAGTATACTTCCCTCGAGTTTACAATGTTCTCAACTCTTAGATAGCAAGGTGACATGTTTGAAA
TCTCACTTGCTGCTTAATAAGCATGGATGTGGCTGAGTTAAATGGGTTCTTGTAATATAACCTACATGTTTTAATTATTTATATGAATTATGATACATAATATATTATTTGCAGAAGCAATTGAATATTTTACTGGTGCGTTTCCATCTATAATGTAGAAAATTACTTGTGGATAAAATATTAAAATGCCATAGCTGTAT
ATGGTGCTCCTAAAGCCTTTTGCTATGGCGTGTTTAACACATGATTTGCAAAAGCTGCTGAGGTAGCATATTCTGGAAAGTATAGCCCTTTAATCATTCC

>TRINITY_DN106714_c0_g1_i5 from sample A2 / Example unspliced isoform:

CTGCATCCATCCGCCGCCCATACACACTCAAAAGCCTATACGATTCAAAGGCAAGGCGGAACTATTTAAAATTCAAAATCGCCGCGAACCCGATTTGAGATAAGAATTCAGAGGCATATTGGGGTTTGATTTACTCTAAGGTTCCTCTTACTCATTGGACTGCTCGAGTTAGCAGAAAAAATGTCAGTAGAAGTAGCAGA
AGGAGAGGAAGTTCTAAAGCCGGACTCGGCCGTGATGCGGGAGATGAGCAAGAAGGCCGCTTGGAGTGTGAGCTCCTGCAAACCTGGCAATGGCGTCAACCTTCTCAGAGATGATAATCTCGACACCTTTTGGCAgtctgatggagctcaacctcatttagtaaatatacagtttcagaagaaggtcaagctacagcttc
ttggaatatatgtagattacaagcttgatgagagttatacgcctaataagatttccatccgtgttggcaacggttttcgtgatttaaagGAAATTAAGTTGGTGGAACTAGTGGAGCCTGTTGGTTGGACCTATATCCCGCTATGTGCAAATGAGTCAAGGTAAGGCAGAAACTTATTTCCTTTCATTGATTGAAATTTC
AGTGTGG

Intron 2 GTCTGATGGA ... ATGAGTCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	53.26	45	69	33.6
A2	57.27	32	56	29.8
A3	54.44	45	76	31.6
A4	58.09	24	41	25.6
A5	51.06	16	22	11.4
A6	57.94	216	367	228.4
A7	57.93	231	408	228.4
A8	57.35	237	380	257.6
A9	57.95	215	320	273.2
A10	59.48	160	311	159

>TRINITY_DN36863_c0_g1_i2 from sample A6 / Example spliced isoform

TCCTTATTGCTGGACCTGCATCCATCCGCCGCCCATACACACTCAAAAGCCTATACGATTCAAAGGCAAGGCGGAACTATTTAAAATTCAAAATCGCCGCGAACCCGATTTGAGATAAGAATTCAGAGGCATATTGGGGTTTGATTTACTCTAAGGTTCCTCTTACTCATTGGACTGCTCGAGTTAGCAGAAAAAATGTC
AGTAGAAGTAGCAGAAGGAGAGGAAGTTCTAAAGCCGGACTCGGCCGTGATGCGGGAGATGAGCAAGAAGGCCGCTTGGAGTGTGAGCTCCTGCAAACCTGGCAATGGCGTCAACCTTCTCAGAGATGATAATCTCGACACCTTTTGGCAGGAAGTATTTGTACAAACATTTATGTTGCAGCTTGCTGTCTTATCTAATC
ATCAAAATGGAAGAGATACCCATATTCGCCAAATAAAAGTTTATGGGCCCTATCCAAATCCAGTTCCCCTCCAGGAATTCCAGTATACTTCCCTCGAGTTTACAATGTTCTCAACTCTTAGATAGCAAGGTGACATGTTTGAAATCTCACTTGCTGCTTAATAAGCATGGATGTGGCTGAGTTAAATGGGTTCTTGTAAT
ATAACCTACATGTTTTAATTATTTATATGAATTATGATACATAATATATTATTTGCAGAAGCAATTGAATATTTTACTGGTGCGTTTCCATCTATAATGTAGAAAATTACTTGTGGATAAAATATTAAAATGCCATAGCTGTATATGGTGCTCCTAAAGCCTTTTACTATGGCGTGTTTAACACATGATTTGCAAAAGCT
GCTGAGGTAGCATATTCTGGAAAGTATAGCCCTCTAATCATTCCAAGTTCTCTTTTATGCATGCTGTTCAGTAGTATTGTTCTTTGAAGATAGTAAATTGAGGATTCACTTTTGCAAAAGTAAATTTTACATTCCCCAGCTGTAGTTCTTTTGACAATACTTTACATTATTTCATACAAGAATGTTGTG

>TRINITY_DN36863_c0_g1_i1 from sample A6 / Example unspliced isoform:

TCCTTATTGCTGGACCTGCATCCATCCGCCGCCCATACACACTCAAAAGCCTATACGATTCAAAGGCAAGGCGGAACTATTTAAAATTCAAAATCGCCGCGAACCCGATTTGAGATAAGAATTCAGAGGCATATTGGGGTTTGATTTACTCTAAGGTTCCTCTTACTCATTGGACTGCTCGAGTTAGCAGAAAAAATGTC
AGTAGAAGTAGCAGAAGGAGAGGAAGTTCTAAAGCCGGACTCGGCCGTGATGCGGGAGATGAGCAAGAAGGCCGCTTGGAGTGTGAGCTCCTGCAAACCTGGCAATGGCGTCAACCTTCTCAGAGATGATAATCTCGACACCTTTTGGCAgtctgatggagctcaacctcatttagtaaatatacagtttcagaagaagg
tcaagctacagcttcttggaatatatgtagattacaagcttgatgagagttatacgcctaataagatttccatccgtgttggcaacggttttcgtgatttaaaggaaattaagttggtggaactagtggagcctgttggttggacctatatcccgctatgtgcaaatgagtcaagGGAAGTATTTGTACAAACATTTATG
TTGCAGCTTGCTGTCTTATCTAATCATCAAAATGGAAGAGATACCCATATTCGCCAAATAAAAGTTTATGGGCCCTATCCAAATCCAGTTCCCCTCCAGGAATTCCAGTATACTTCCCTCGAGTTTACAATGTTCTCAACTCTTAGATAGCAAGGTGACATGTTTGAAATCTCACTTGCTGCTTAATAAGCATGGATGTG
GCTGAGTTAAATGGGTTCTTGTAATATAACCTACATGTTTTAATTATTTATATGAATTATGATACATAATATATTATTTGCAGAAGCAATTGAATATTTTACTGGTGCGTTTCCATCTATAATGTAGAAAATTACTTGTGGATAAAATATTAAAATGCCATAGCTGTATATGGTGCTCCTAAAGCCTTTTACTATGGCGT
GTTTAACACATGATTTGCAAAAGCTGCTGAGGTAGCATATTCTGGAAAGTATAGCCCTCTAATCATTCCAAGTTCTCTTTTATGCATGCTGTTCAGTAGTATTGTTCTTTGAAGATAGTAAATTGAGGATTCACTTTTGCAAAAGTAAATTTTACATTCCCCAGCTGTAGTTCTTTTGACAATACTTTACATTATTTCAT
ACAAGAATGTTGTG

Intron 3 GTAAGTATTA ... GCTGAAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	18.88	43	10	0
A2	19.57	37	9	0
A3	19.24	42	10	0
A4	10.53	25.5	3	0
A5	21.34	14.8	4	0
A6	19.92	329.8	82	2
A7	23.68	316	98	0
A8	22.04	347	98	0
A9	22.03	379	107	0
A10	16.66	195.3	39	0

>TRINITY_DN44531_c0_g2_i5 from sample A9 / Example spliced isoform

GTTATAACCATTCTTATTGCTGGACCTGCATCCATCCGCCGCCCATACACACTCAAAAGCCTATACGATTCAAAGGCAAGGCGGAACTATTTAAAATTCAAAATCGCCGCGAACCCGATTTGAGATAAGAATTCAGAGGCATATTGGGGTTTGATTTACTCTAAGGTTCCTCTTACTCATTGGACTGCTCGAGTTAGCAG
AAAAAATGTCAGTAGAAGTAGCAGAAGGAGAGGAAGTTCTAAAGCCGGACTCGGCCGTGATGCGGGAGATGAGCAAGAAGGCCGCTTGGAGTGTGAGCTCCTGCAAACCTGGCAATGGCGTCAACCTTCTCAGAGATGATAATCTCGACACCTTTTGGCAGTCTGATGGAGCTCAACCTCATTTAGTAAATATACAGTTT
CAGAAGAAGGTCAAGCTACAGCTTCTTGGAATATATGTAGATTACAAGCTTGATGAGAGTTATACGCCTAATAAGATTTCCATCCGTGTTGGCAACGGTTTTCGTGATTTAAAGGAAATTAAGTTGGTGGAACTAGTGGAGCCTGTTGGTTGGACCTATATCCCGCTATGTGCAAATGAGTCAAGGGAAGTATTTGTACA
AACATTTATGTTGCAGCTTGCTGTCTTATCTAATCATCAAAATGGAAGAGATACCCATATTCGCCAAATAAAAGTTTATGGGCCCTATCCAAATCCAGTTCCCCTCCAGGAATTCCAGTATACTTCCCTCGAGTTTACAATGTTCTCAACTCTTAGATAGCAAGGTGACATGTTTGAAATCTCACTTGCTGCTTAATAAG
CATGGATGTGGCTGAGTTAAATGGGTTCTTGTAATATAACCTACATGTTTTAATTATTTATATGAATTATGATACATAATATATTATTTGCAGAAGCAATTGAATATTTTACTGGTGCGTTTCCATCTATAATGTAGAAAATTACTTGTGGATAAAATATTAAAATGCCATAGCTGTATATGGTGCTCCTAAAGCCTTTT
ACTATGGCGTGTTTAACACATGATTTGCAAAAGCTGCTGAGGTAGCATATTCTGGAAAGTATAGCCCTTTAATCATTCCAAGTTCTCTTTTATGCATGCTGTTCAGTAGTATTGTTCTTTGAAGATAGTAAATTGAGGATTCAC

>TRINITY_DN44531_c0_g2_i1 from sample A9 / Example unspliced isoform:

GTTATAACCATTCTTATTGCTGGACCTGCATCCATCCGCCGCCCATACACACTCAAAAGCCTATACGATTCAAAGGCAAGGCGGAACTATTTAAAATTCAAAATCGCCGCGAACCCGATTTGAGATAAGAATTCAGAGGCATATTGGGGTTTGATTTACTCTAAGGTTCCTCTTACTCATTGGACTGCTCGAGTTAGCAG
AAAAAATGTCAGTAGAAGTAGCAGAAGGAGAGGAAGTTCTAAAGCCGGACTCGGCCGTGATGCGGGAGATGAGCAAGAAGGCCGCTTGGAGTGTGAGCTCCTGCAAACCTGGCAATGGCGTCAACCTTCTCAGAGATGATAATCTCGACACCTTTTGGCAGTCTGATGGAGCTCAACCTCATTTAGTAAATATACAGTTT
CAGAAGAAGGTCAAGCTACAGCTTCTTGGAATATATGTAGATTACAAGCTTGATGAGAGTTATACGCCTAATAAGATTTCCATCCGTGTTGGCAACGGTTTTCGTGATTTAAAGGAAATTAAGTTGGTGGAACTAGTGGAGCCTGTTGGTTGGACCTATATCCCGCTATGTGCAAATGAGTCAAGGGAAGTATTTGTACA
AACATTTATGTTGCAGCTTGCTGTCTTATCTAATCATCAAAATGGAAGAGATACCCATATTCGCCAAATAAAAGTTTATGGGCCCTATCCgtaagtattagttgctgccctctctttttacaaactgtgtcagtgtcactcgtgatcaattctagtacagtatgattgaaattgtattattcagtggctacatcctaaac
ggtttcggcatgagttattctcatcacatggctttgttgtgctgaaacagAAATCCAGTTCCCCTCCAGGAAT