sp|P0C8Z0|Y8359_ORYSI ----> Uncharacterized protein OsI_027940
Intron 1 GTAAGTTGTG ... ATGATACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.28 | 454 | 52 | 0 |
| A2 | 12.36 | 539 | 76 | 0 |
| A3 | 12.6 | 534 | 77 | 2 |
| A4 | 10.46 | 411 | 48 | 1 |
| A5 | 15.85 | 239 | 45 | 1 |
| A6 | 8.41 | 1829 | 168 | 1 |
| A7 | 8.48 | 2169 | 201 | 2 |
| A8 | 10.36 | 1584 | 183 | 1 |
| A9 | 10.6 | 2489 | 295 | 5 |
| A10 | 11.66 | 1963 | 259 | 1 |
>TRINITY_DN110692_c9_g5_i3 from sample A3 / Example spliced isoformATATGGTAAAAAAAATGACCGCGGGGGCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAG
CTTCTATTTACAGCATTAACTACACAATGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTAT
GATAGGGTGAATGTGGAGGAAAGCAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATTGCCTCCAGCTGGGCAAGA
CATGGATTTTGGTGGCATGGACTTCTCGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAG
TGAAGATATGATCGATATTTTTCCTATCTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGGATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAA
TGTAGAAAACACTAGAATTGTAATTACACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCTTATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAAC
ATTCTTTCAGTCTTTTTAACCTACTATTTGCATGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCTGGTGGGTCCTTTTTGAATATAATGATGTGACTT
>TRINITY_DN110692_c9_g5_i2 from sample A3 / Example unspliced isoform:ATATGGTAAAAAAAATGACCGCGGGGGCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAG
CTTCTATTTACAGCATTAACTACACAATGAGgtaagttgtgtttttagttcaatgaggtaggcattttttagttcagtttatcgttgccttctttccatggctgtttttgggtttttaaagctcgctcttctgagggtttatatccatgagtacccaaaagcagttttagttttccatgcctatatgtgacctcggcgta
ttgggctctgggttctctcatcctttcgaacctgcgaccaacctttggcaggccgttgttttttattttccttagcatgcatggagggtttcagacaaggtttttcgatgatacaagTCGACATCCAGAAGTCAAAT
Intron 2 GTCAGTAAGA ... TGCGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.02 | 716 | 71 | 2 |
| A2 | 10.36 | 623 | 72 | 5 |
| A3 | 10.67 | 636 | 76 | 9 |
| A4 | 13.99 | 455 | 74 | 13 |
| A5 | 11.78 | 307 | 41 | 0 |
| A6 | 10.54 | 3514 | 414 | 4 |
| A7 | 11.18 | 3804 | 479 | 3 |
| A8 | 9.66 | 3630 | 388 | 9 |
| A9 | 10.75 | 3892 | 469 | 10 |
| A10 | 10.99 | 2997 | 370 | 2 |
>TRINITY_DN97480_c0_g1_i1 from sample A4 / Example spliced isoformCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAGCTTCTATTTACAGCATTAACTACACAA
TGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTATGATAGGGTGAATGTGGAGGAAAGCAAT
ATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATTGCCTCCAGCTGGGCAAGACATGGATTTTGGTGGCATGGACTTCTC
GAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAGTGAAGATATGATCGATATTTTTCCTAT
CTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGGATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAATGTAGAAAACACTAGAATTGTAATTAC
ACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCTTATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTACTAT
TTGCATGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCTGGTGGGTCCTTTTTGAATATAATGATGTGACTT
>TRINITY_DN97480_c0_g1_i3 from sample A4 / Example unspliced isoform:CCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAGCTTCTATTTACAGCATTAACTACACAA
TGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTATGATAGGGTGAATGTGGAGGAAAGCAAT
ATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATgtcagtaagatgttacagaaattctgtaccggatttgtttgtggtc
actgtattattttttgtctatttcttttgaactaattccttgtatgcgttttagTGCCTCCAGCTGGGCAAGACATGGATTTTGGTGGCATGGACTTCTCGGTAATGTTCTATTGGTTATGTGGAGTATTTAGACATGTCAATACTTGGATTTTGTTTGTACATGGAGTTGAATCATGAGACTTATTGTCATTAATTGTA
TGTGTTCAGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGGTATTTTCTATAACCATCTAACAAATGTCTGGGACATGATATTGTCTGTAGCCTATTTAAGATTCTATATTATTCGGAATGTTTATTATAAAATTAATCTATCATACTTTTG
CAGATCAAGAACCACCAGCAGAAGA
Intron 3 GTATTTTCTA ... ACTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.07 | 890 | 65 | 131 |
| A2 | 11.69 | 827 | 61.7 | 116.7 |
| A3 | 9.95 | 867 | 74.7 | 101 |
| A4 | 11.09 | 546 | 49.7 | 72.7 |
| A5 | 11.97 | 384 | 28.7 | 56 |
| A6 | 10.62 | 5435 | 359.7 | 686 |
| A7 | 10.24 | 5634 | 383.7 | 681 |
| A8 | 11.38 | 5493 | 406.3 | 753 |
| A9 | 10.92 | 5789 | 397 | 756 |
| A10 | 10.04 | 4613 | 286.3 | 545.3 |
>TRINITY_DN37642_c0_g2_i4 from sample A6 / Example spliced isoformGGCGGTTTGATATGGTAAAAAAAATGACCGCGGGGGCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGG
GTTCTCCAGCTTCTATTTACAGCATTAACTACACAATGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTT
TACTTGTATGATAGGGTGAATGTGGAGGAAAGCAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATTGCCTCCAGC
TGGGCAAGACATGGATTTTGGTGGCATGGACTTCTCGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAG
GAAAGGCAGTGAAGATATGATCGATATTTTTCCTATCTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGGATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTA
TTTGGAGAATGTAGAAAACACTAGAATTGTAATTACACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCTTATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAA
GTCCCAAACATTCTTTCAGTCTTTTTAACCTACTATTTGCATGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCTGGTGGGTCCTTTTTGAATATAATGATGTGACTTTTGAATCTGCGATATTTCCAAAAGCATTGGATTAATTTGCATTTGATGAAGTCCCAACATTCTCTCAGTCTTTTTAACCAACT
ATTTGCATGGATGTAAAGACTACTTGTTTGTGTTAAGGTCGAACCCTGGTAATAAGCGGCACGGGTATCAATGTGGAAGTTTGTAACTAACACAAACGATCACTGTAATTGCATTTAAATGAGAACCCATATGCACTTTATCCGAGAAAGAAGCTAGGCATATTACAAAATGATGTGGGTGTATATCAGCAGTTAATTAT
TTACAATTACTGATTGTTGGATTTTTAGCATAAGC
>TRINITY_DN37642_c0_g2_i1 from sample A6 / Example unspliced isoform:GGCGGTTTGATATGGTAAAAAAAATGACCGCGGGGGCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGG
GTTCTCCAGCTTCTATTTACAGCATTAACTACACAATGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTT
TACTTGTATGATAGGGTGAATGTGGAGGAAAGCAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATCTGGGCAAGA
CATGGATTTTGGTGGCATGGACTTCTCGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGgtattttctataaccatctaacaaatgtctgggacatgatattgtctgtagcctatttaagattctatattactctgaatgtcttataccatt
aatccatcatacctttgcagatgtctgggacatgatatggtctgtagcctatttaagattctatattattcggaatgtttattataaaattaatctatcatacttttgcagATCAAGAACCACCAGCAGAAGA
Intron 4 GTAAAAAAAA ... TTCTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.65 | 39 | 0 | 47 |
| A2 | 61.65 | 51 | 0 | 82 |
| A3 | 53.57 | 78 | 1 | 90 |
| A4 | 60.81 | 29 | 0 | 45 |
| A5 | 57.38 | 26 | 0 | 35 |
| A6 | 63.06 | 157 | 4 | 268 |
| A7 | 60.26 | 211 | 0 | 320 |
| A8 | 64.45 | 182 | 1 | 330 |
| A9 | 59.37 | 310 | 3.5 | 453 |
| A10 | 61.36 | 228 | 8.5 | 362 |
>TRINITY_DN40978_c0_g1_i1 from sample A7 / Example spliced isoformCTTAGTATGAACGTCGGAGAGATGAAAATAGGCGGTAATAGGTATAACGCTTTTTAAATGACCATCGCCAACGTACAAGAGAATGCTGACGTGGCACCCTCATATGAATATTGAATGGCGGTTTGATATGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTT
CTCCAGCTTCTATTTACAGCATTAACTACACAATGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTAC
TTGTATGATAGGGTGAATGTGGAGGAAAGCAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAAT
>TRINITY_DN40978_c0_g1_i2 from sample A7 / Example unspliced isoform:CTTAGTATGAACGTCGGAGAGATGAAAATAGGCGGTAATAGGTATAACGCTTTTTAAATGACCATCGCCAACGTACAAGAGAATGCTGACGTGGCACCCTCATATGAATATTGAATGGCGGTTTGATATGgtaaaaaaaatgaccgcgggggccttccgatcctttcccctccgtttatttatgtatctggtaccttcta
gaattttcacccttttctacttatagccccctcctccgcttcttttcagAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAGCTTCTATTTACAGCATTAACTACACAATGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGT
ATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTATGATAGGGTGAATGTGGAGGAAAGCAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAG
AAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATTGCCTCCAGCTGGGCAAGACATGGATTTTGGTGGCATGGACTTCTCGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGA
TATTAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAGTGAAGATATGATCGATATTTTTCCTATCTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCT
TGGATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAATGTAGAAAACACTAGAATTGTAATTACACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTA
TCTTATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTACTATTTGCATGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCT
GGTGGGTCCTTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTA
Intron 5 GTAGGAAACT ... TCTTGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.77 | 407 | 125 | 115 |
| A2 | 22.71 | 396.5 | 100 | 133 |
| A3 | 22.06 | 461 | 121 | 140 |
| A4 | 23.96 | 292 | 88 | 96 |
| A5 | 21.9 | 214 | 54 | 66 |
| A6 | 22.81 | 1863 | 348 | 753 |
| A7 | 23.19 | 2029 | 413 | 812 |
| A8 | 23.13 | 1690 | 332 | 685 |
| A9 | 22.32 | 2201 | 456 | 809 |
| A10 | 24.68 | 2068 | 442 | 913 |
>TRINITY_DN110692_c9_g5_i3 from sample A3 / Example spliced isoformATATGGTAAAAAAAATGACCGCGGGGGCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAG
CTTCTATTTACAGCATTAACTACACAATGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTAT
GATAGGGTGAATGTGGAGGAAAGCAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATTGCCTCCAGCTGGGCAAGA
CATGGATTTTGGTGGCATGGACTTCTCGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAG
TGAAGATATGATCGATATTTTTCCTATCTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGGATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAA
TGTAGAAAACACTAGAATTGTAATTACACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCTTATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAAC
ATTCTTTCAGTCTTTTTAACCTACTATTTGCATGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCTGGTGGGTCCTTTTTGAATATAATGATGTGACTT
>TRINITY_DN110692_c9_g5_i4 from sample A3 / Example unspliced isoform:ATATGGTAAAAAAAATGACCGCGGGGGCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAG
CTTCTATTTACAGCATTAACTACACAATGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTAT
GATAGGGTGAATGTGGAGgtaggaaactacaggatatttatgtgcatacattatttatttcagtcgttttttagaggtaaacaagataaattatgatgggatctgtcgaactaatattggatcccactgttcttgtttagGAAAGCAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAG
AAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATTGCCTCCAGCTGGGCAAGACATGGATTTTGGTGGCATGGACTTCTCGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATAT
TAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAGTGAAGATATGATCGATATTTTTCCTATCTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGG
ATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAATGTAGAAAACACTAGAATTGTAATTACACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCT
TATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTACTATTTGCATGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCTGGT
GGGTCCTTTTTGAATATAATGATGTGACTT
Intron 6 GTAATGTTCT ... ATGTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.73 | 787.7 | 4 | 66.3 |
| A2 | 6.86 | 662.5 | 1 | 56.3 |
| A3 | 8.1 | 731.3 | 8.2 | 76.3 |
| A4 | 8.14 | 528.3 | 8.7 | 53.7 |
| A5 | 9.39 | 327.8 | 4 | 39 |
| A6 | 7.59 | 4212.6 | 3.2 | 427.3 |
| A7 | 7.43 | 4418.5 | 4.6 | 434 |
| A8 | 6.93 | 4233 | 2.3 | 381.7 |
| A9 | 7.33 | 4490.7 | 9.5 | 431.7 |
| A10 | 7.42 | 3455.6 | 0.6 | 339.7 |
>TRINITY_DN115885_c2_g1_i7 from sample A1 / Example spliced isoformGCCTCAAACAAAACATTAACAATCATCAACATTGTTTAAGCTGCAAAGAAAACGACAATCTTTTTGTTCAAGATATTGAATAAACTAAAAAATTGGTTAAATGTACATTTAAGTGGCTGTCCGGGCAACAGCTGGTAATTTGGGTCTTGATTTTTTATTTATTGAAGCACTGTTTAATTTTCCACCCTTTTTTTTACTTC
CGTTGTTTCGAAAGTGTTTTGAGCAATATGCTTGGAAGGGTTGCACCGAAAAGAGCAAGCCAAATTTGCCTGGCTCTTGCGCCTAGCCTCATTCCCCTGAAACTTGTGCCGTATGTATGCGACCAGAGCAGGAGAATGGAACCCTGGTGAACAGCTTACAATCTTTGGCTCTTACCAGAGAACCAATGCCCTATTCCCAA
TATTTAAACAGTCCAATAGAAGATGTATTTTTGGCCTGTAGATATATAATTTGGCATTTTCTAAGCTTTCAACAATCACTTTTAGGATTTCAGAAGAAACTTTTAACCCAATTTTCGTTTGATTTTCAAGTTTGGTTAGGTGCTTGGCTATATTCTTTTTTTTCATGTTTTAGTATAGGTTAGGTTTTTGGCTATATTCT
TTTCTTTTTGCTTTAGTATATGTTGGTTTCTGGGTATATTCTTTTTTTTTTAGGATATGTTGGCTTTTAAATCAGATCTGTTTCATGTTTGAAGGAGGTTAAGGTTGCATCTTGGTGGATGTAACTGTTCTTTATTGTTTGAGATATATCTTTATGTATACCACTCTTCTTTATTAACTAAAATTTGTTTGACTTGAATG
ATTTTCAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTATGATAGGGTGAATGTGGAGGAAAG
CAATATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATCTGGGCAAGACATGGATTTTGGTGGCATGGACTTCTCGAAGC
TGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAGTGAAGATATGATCGATATTTTTCCTATCTACC
AAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGGATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAATGTAGAAAACACTAGAATTGTAATTACACGGC
ATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCTTATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTACTATTTGCA
TGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCTGGTGGGTCCTTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTACTATTTGCATGGATGTAAAGACTA
>TRINITY_DN115885_c2_g1_i3 from sample A1 / Example unspliced isoform:ATTTTGGTGGCATGGACTTCTCGgtaatgttctattggttatgtggagtatttagacatgtcaatacttggattttgtttgtacatggagttgaatcatgagacttattgtcattaattgtatgtgttcagAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATT
GATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAGTGAAGATATGATCGATATTTTTCCTATCTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGGATGGGGAAACTTGTCTTTT
TTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAATGTAGAAAACACTAGAATTGTAATTACACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCTTATATGGGGAATTATTTCA
AGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTACTATTTGCATGGATGTAAAGACTAC
Intron 7 GTATTTTCTA ... ACTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.23 | 884.5 | 2 | 0 |
| A2 | 1.08 | 824 | 9 | 0 |
| A3 | 1.83 | 859 | 16 | 5 |
| A4 | 2.16 | 544.5 | 12 | 0 |
| A5 | 1.54 | 383 | 6 | 0 |
| A6 | 0.06 | 5406.5 | 3 | 0 |
| A7 | 0.09 | 5600 | 5 | 0 |
| A8 | 0.13 | 5459 | 7 | 0 |
| A9 | 0.26 | 5760 | 15 | 1 |
| A10 | 0 | 4583 | 0 | 0 |
>TRINITY_DN97480_c0_g1_i1 from sample A4 / Example spliced isoformCCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAGCTTCTATTTACAGCATTAACTACACAA
TGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTATGATAGGGTGAATGTGGAGGAAAGCAAT
ATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATTGCCTCCAGCTGGGCAAGACATGGATTTTGGTGGCATGGACTTCTC
GAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGATCAAGAACCACCAGCAGAAGATGATTATGTAGTAGAAGAATCAGAGGAAGAAGCCCACGTAAAAGAAAGTGAATCTGATGAAGGAAAGGCAGTGAAGATATGATCGATATTTTTCCTAT
CTACCAAATGCTGAATGAAAGCCAGGACAGATTTCAGTCAAGAAGTCTTGGATGGGGAAACTTGTCTTTTTTTATTTTAGTTAAAATCATTTCATCACAATTATGTAGTAATCTTGGTGACGTATAATCTTCATGTATCTTTTGAGATGTATGCAATGATTGTATTTGGAGAATGTAGAAAACACTAGAATTGTAATTAC
ACGGCATAAGGTTGATCTTGTAGTTTTGTTTATATGGCATCTCGTGTATCTTATATGGGGAATTATTTCAAGATTTAGAAGGGGTCCCTTTTGAATATAATGATGTGACTTTTGAATCTGCTGCGATATTTCCAAAAGCATTTGGTTAATTTGCATTTGATGAAGTCCCAAACATTCTTTCAGTCTTTTTAACCTACTAT
TTGCATGGATGTAAAGACTACATGTCTGTATTGTTAAGGTCGAACCCTGGTGGGTCCTTTTTGAATATAATGATGTGACTT
>TRINITY_DN97480_c0_g1_i3 from sample A4 / Example unspliced isoform:CCTTCCGATCCTTTCCCCTCCGTTTATTTATGTATCTGGTACCTTCTAGAATTTTCACCCTTTTCTACTTATAGCCCCCTCCTCCGCTTCTTTTCAGAATCGATTTCTCCATTGTTTTTGCTGTTTGTTGCAATACTTCTGCAAGGAATTCCGAGGATTGAAGGGTTCTCCAGCTTCTATTTACAGCATTAACTACACAA
TGAGTCGACATCCAGAAGTCAAATGGGCACAGAGGTCTGATAAGTTGTATATTACAATTGAATTGCCTGATGCAAACAACCCAAAAGTGAAGCTTGAGCCTGATGGAAAGTTTACTTTCTCTGCAACCACTGGGCAAGAGCAAACACCTTATGAGCTTGACTTTTACTTGTATGATAGGGTGAATGTGGAGGAAAGCAAT
ATCAGTGTTGGTTTGAGAAACATTATTTGCATTCTTAAAAAAGAGGAGAAGAAATGGTGGAAACAGTTGTTGAAGATTGAAGCGAAGCGACTGCCATTCCTTAAAGTTGATTGGGACAAATGGGTTGATGAGGATGAAGAAAAAGATGATAAATGTCAGTAAGATGTTACAGAAATTCTGTACCGGATTTGTTTGTGGTC
ACTGTATTATTTTTTGTCTATTTCTTTTGAACTAATTCCTTGTATGCGTTTTAGTGCCTCCAGCTGGGCAAGACATGGATTTTGGTGGCATGGACTTCTCGGTAATGTTCTATTGGTTATGTGGAGTATTTAGACATGTCAATACTTGGATTTTGTTTGTACATGGAGTTGAATCATGAGACTTATTGTCATTAATTGTA
TGTGTTCAGAAGCTGGGCATGGGTGATGATGAGCCTTATAATGACGACGATCTTGATATTAATGATGAACATGACATTGATGTAGAGGgtattttctataaccatctaacaaatgtctgggacatgatattgtctgtagcctatttaagattctatattattcggaatgtttattataaaattaatctatcatacttttg
cagATCAAGAACCACCAGCAGAAGA