sp|Q8S1Z1|UTP11_ORYSJ ----> Probable U3 small nucleolar RNA-associated protein 11
Intron 1 GTGATTTGTC ... ATGTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.89 | 45.5 | 147 | 64 |
| A2 | 78.64 | 28.7 | 149 | 61 |
| A3 | 75.76 | 36 | 166 | 59 |
| A4 | 68.24 | 26.5 | 85 | 29 |
| A5 | 76.4 | 19 | 81 | 42 |
| A6 | 68.08 | 182.7 | 432.7 | 347 |
| A7 | 74.62 | 275.5 | 1015 | 605 |
| A8 | 73.64 | 301.9 | 974.7 | 712 |
| A9 | 76.83 | 228.5 | 934 | 581 |
| A10 | 73.48 | 203.7 | 763 | 366 |
>TRINITY_DN110962_c8_g1_i5 from sample A4 / Example spliced isoformGCTCGGGAGTTCTAGTTATGCTAATATTACTATTAGTTTTAATAATCTTAATGTTAATATTAATTATAGTTTTAGTATAATCTTAATATTAATAATAACATATATAATATTAGTAATAAAATTAACATAAATGATAATATTAATCACATCTTTTAATATTAATAATAATATATTTAAGAATAAGATTATTAAATATTATT
ATAACTAACCACACAAAAAGAGCCTTTATAGATAAATAATAAAGTATATAAACGCAGAAACAATAAAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACGGGCCCACGAACTGGTTTTTGCTTCGTATTCGA
CTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCCGGTCTAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTGCAGGACGGCTATGAAGTTTCACTCGGGCTGGCAGTCTACAGGTAAATGTAA
CAGAAGAAATTCGGCGAACTTAACCATTTAAATTCTCCCTCCTATTAAATTCGACGAATTTCGATTTTCAAGCCGAAAAATCGGCGAACACGGTGACTTAGCAAGCTTCATCCGACATGAAGGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTGAAGGTTGGAGCTGGAGTCAGTGCCTCTTAAACTTGCCCACCG
GTCTACTGAAGAGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTGGAAGTTTGAACTCTGGACTCAACAGATTGAAATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAGGAACGTGCCCAGCCGACTGCAAGGAGTAAATTTGGATTACTA
GAAAAACACAAGGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCCAAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAGTGGCGCAAAGCAATATTCCCACGAGGAAATGTTATTAATGAA
GACTCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGACTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAGTCTTATCAGCAGAAGAGAAGGCAATTATTCCTGCTCAATTGC
CAAAGCGTATAAAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTTCACGAAACAACAGGACCAGTTTATAAATGGCGCAAGGAACGG
AAAAGGTCAGCACTGCTACATTTTTATCAATGCAAAGAACGAGTTTTGGGTTCAAGAAGACATGATCTGAACTCTCTCTCTCTCTCTCTCTTTATATATATATAAGCAATCAATGGTTTCGAATATTACACATGGATGCTGTGCACATAGGATTTACTTTTTAATTTTAGAATGTGCAACTCTGTATGCATGTTCTCTAA
CTCGAGTTACAACTGCCCTGCTCCCAGTTTGCAAGCCCTACATTACGTTCAGGGACATAATCCTCATTATTCAGCTTTCATCTCCATTTAATATAAAAATGTTGAACAGCGGCATGTTTTACGCTGTCCAGTTTTATAAT
>TRINITY_DN110962_c8_g1_i6 from sample A4 / Example unspliced isoform:GCTCGGGAGTTCTAGTTATGCTAATATTACTATTAGTTTTAATAATCTTAATGTTAATATTAATTATAGTTTTAGTATAATCTTAATATTAATAATAACATATATAATATTAGTAATAAAATTAACATAAATGATAATATTAATCACATCTTTTAATATTAATAATAATATATTTAAGAATAAGATTATTAAATATTATT
ATAACTAACCACACAAAAAGAGCCTTTATAGATAAATAATAAAGTATATAAACGCAGAAACAATAAAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACGGGCCCACGAACTGGTTTTTGCTTCGTATTCGA
CTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCCGGTCTAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTATGAAGTTTCACTCGGGCTGGCAGTCTACAGGTAAATGTAACAGAAGAAATT
CGGCGAACTTAACCATTTAAATTCTCCCTCCTATTAAATTCGACGAATTTCGATTTTCAAGCCGAAAAATCGGCGAACACGGTGACTTAGCAAGCTTCATCCGACATGAAGGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTGAAGGTTGGAGCTGGAGTCAGTGCCTCTTAAACTTGCCCACCGGTCTACTGAAG
AGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTGGAAGTTTGAACTCTGGACTCAACAGATTGAAATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAGGAACGTGCCCAGCCGACTGCAAGGAGTAAATTTGGATTACTAGAAAAACACAA
GGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCCAAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAGTGGCGCAAAGCAATATTCCCACGAGGAAATGTTATTAATGAAGACTCAGGACA
TTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGACTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAGTCTTATCAGCAGAAGAGAAGGCAATTATTCCTGCTCAATTGCCAAAGCGTATA
AAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTTCACGAAACAACAGGACCAGTTTATAAATGGCGCAAGGAACGGAAAAGgtgatt
tgtccacttcactggacatagctcgcattatgattgggacatcatagaaatagagcacacatcccatttttgaagaatttgtatgaaaatgtcaacagGTCAGCACTGCTACATTTTTATCAATGCAAAGAACGAGTTTTGGGTTCAAGAAGACATGATCTGAACTCTCTCTCTCTCTCTCTCTTTATATATATATAAGC
AATCAATGGTTTCGAATATTACACATGGATGCTGTGCACATAGGATTTACTTTTTAATTTTAGAATGTGCAACTCTGTATGCATGTTCTCTAACTCGAGTTACAACTGCCCTGCTCCCAGTTTGCAAGCCCTACATTACGTTCAGGGACATAATCCTCATTATTCAGCTTTCATCTCCATTTAATATAAAAATGTTGAAC
AGCGGCATGTTTTACGCTGTCCAGTTTTATAAT
Intron 2 GTTTGAACTC ... GGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.91 | 140 | 11.3 | 27.9 |
| A2 | 22.68 | 96 | 12.3 | 30.2 |
| A3 | 22.57 | 154 | 7.6 | 47.6 |
| A4 | 20.3 | 77 | 9.9 | 21.1 |
| A5 | 12.81 | 31 | 1.8 | 4.7 |
| A6 | 14.96 | 124 | 7 | 22.9 |
| A7 | 16.76 | 376 | 17.3 | 80 |
| A8 | 15.47 | 296.8 | 21 | 57.1 |
| A9 | 15.45 | 333 | 22.3 | 63.9 |
| A10 | 16.32 | 275 | 17.7 | 56.6 |
>TRINITY_DN129861_c8_g1_i6 from sample A1 / Example spliced isoformTCAGCATAGGGCTCAAGGCCGTTACACAACAATATAATCATTTGAGAGCTCAACATGTCACTTGTGAGAATCGAACCCGGGAGGGAAGGACAACAATCATTCCTCCCAACCACCCAAGCTACATTAAATTTAACATAAGTGATAATATTAATTACATCTTTTAATATTAATAATAATATATTTAAGAATAAGATTATTAA
ATATTATTATAACTAACCACACAAAAAGAGCCTTTATAAAGAGCCTTTATAGATAAATAATAAAGTAAAAAAAAAGTATATCAACGCAGAAACAATAAAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACG
GGCCCACGAACTGGTTTTTGCTTCGAATTCGACTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCCGGTCTAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTATGAAGTTTCACTCGGGCTG
GCAGTCTACAGGTAAATGTAACAGATGAAATTCGGCGAACTTAACCATTTAAATTCTCCCTCCTATTAAATTCGACGAATTTCGATTTTCAAGCCGAAAAATCGGCGAACACGGTGACTTAGCAAGCCTCATCCGACATGAAGGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTGAAGGTTGGAGCTGGAGTCAGT
GCCTCTTAAACTTGCCCACCGGTCTACTGAAGAGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTGGAAGTTTGAACTCTGGACTCAACAGATTGAAATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAGGAACGTGCCCAGCCGACTGCA
AGGAGTAAATTTGGATTACTAGAAAAACACAAGGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCCAAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAGTGGCGCAAAGCAATATTCCCA
TGAGGAAATGTTATTAATGAAGACTCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGACTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAGTCTTATCAGCAGAAGAGAAGG
CAATTATTCCTGCTCAATTGCCAAAGCGTATAAAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTTCACGAAACAACAGGACCAGTT
TATAAATGGCGCAAGGAACGGAAAAGGTGATTTGTCCACTTCACTGGACATAGCTCGCATTATGATTGGGACATCATAGAAATAGAGCACACATCCCATTTTTGAAGAATTTGTATGAAAATGTCAACAGGTCAGCACTGCTACATTTTTATCAATGCAAAGAACGAGTTTTGGGTTCAAGAAGACATGATCTGAACTCT
CTCTCTCTCTCTCTCTCTTTATATATATATAAGCAATCAATGGTTTCGAATATTACACATGGATGCTGTGCACATAGG
>TRINITY_DN129861_c8_g1_i4 from sample A1 / Example unspliced isoform:TCAGCATAGGGCTCAAGGCCGTTACACAACAATATAATCATTTGAGAGCTCAACATGTCACTTGTGAGAATCGAACCCGGGAGGGAAGGACAACAATCATTCCTCCCAACCACCCAAGCTACATTAAATTTAACATAAGTGATAATATTAATTACATCTTTTAATATTAATAATAATATATTTAAGAATAAGATTATTAA
ATATTATTATAACTAACCACACAAAAAGAGCCTTTATAAAGAGCCTTTATAGATAAATAATAAAGTAAAAAAAAAGTATATCAACGCAGAAACAATAAAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACG
GGCCCACGAACTGGTTTTTGCTTCGAATTCGACTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCCGGTCTAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTATGAAGTTTCACTCGGGCTG
GCAGTCTACAGGTAAATGTAACAGATGAAATTCGGCGAACTTAACCATTTAAATTCTCCCTCCTATTAAATTCGACGAATTTCGATTTTCAAGCCGAAAAATCGGCGAACACGGTGACTTAGCAAGCCTCATCCGACATGAAGGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTGAAGGTTGGAGCTGGAGTCAGT
GCCTCTTAAACTTGCCCACCGGTCTACTGAAGAGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTGGAAGTTTGAACTCTGGACTCAACAGATTGAAgtttgaactctgaacttggtgtttaacttgttactaattagagacatattttttctgattgctttattggcccatcgagcagtaatc
atggtatctagcttgtttatttgggctctcagtcatgatgaaaagtacactaaagaagcttttatgtctattttcaatttgttttggttttgcagATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAGGAACGTGCCCAGCCGACTGCAAGGAGTAAATTTGGATTA
CTAGAAAAACACAAGGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCCAAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAGTGGCGCAAAGCAATATTCCCATGAGGAAATGTTATTAAT
GAAGACTCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGACTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAGTCTTATCAGCAGAAGAGAAGGCAATTATTCCTGCTCAAT
TGCCAAAGCGTATAAAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTTCACGAAACAACAGGACCAGTTTATAAATGGCGCAAGGAA
CGGAAAAGGTGATTTGTCCACTTCACTGGACATAGCTCGCATTATGATTGGGACATCATAGAAATAGAGCACACATCCCATTTTTGAAGAATTTGTATGAAAATGTCAACAGGTCAGCACTGCTACATTTTTATCAATGCAAAGAACGAGTTTTGGGTTCAAGAAGACATGATCTGAACTCTCTCTCTCTCTCTCTCTCT
TTATATATATATAAGCAATCAATGGTTTCGAATATTACACATGGATGCTGTGCACATAGG
Intron 3 GTAAATGTAA ... GATTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.31 | 59 | 197.2 | 119.9 |
| A2 | 78.73 | 63.8 | 232.8 | 142.5 |
| A3 | 75.94 | 80.8 | 249 | 145.6 |
| A4 | 75.63 | 61.5 | 187.4 | 118.2 |
| A5 | 77.35 | 29.7 | 98.8 | 52.7 |
| A6 | 76.05 | 45.5 | 142.6 | 102.5 |
| A7 | 76.25 | 157.4 | 497.4 | 318 |
| A8 | 75.62 | 120.8 | 366.6 | 233.6 |
| A9 | 74.4 | 162.9 | 465.3 | 298.3 |
| A10 | 76.6 | 178.1 | 570.6 | 359.3 |
>TRINITY_DN129861_c8_g1_i7 from sample A1 / Example spliced isoformTCAGCATAGGGCTCAAGGCCGTTACACAACAATATAATCATTTGAGAGCTCAACATGTCACTTGTGAGAATCGAACCCGGGAGGGAAGGACAACAATCATTCCTCCCAACCACCCAAGCTACATTAAATTTAACATAAGTGATAATATTAATTACATCTTTTAATATTAATAATAATATATTTAAGAATAAGATTATTAA
ATATTATTATAACTAACCACACAAAAAGAGCCTTTATAAAGAGCCTTTATAGATAAATAATAAAGTAAAAAAAAAGTATATCAACGCAGAAACAATAAAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACG
GGCCCACGAACTGGTTTTTGCTTCGAATTCGACTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCCGGTCTAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTATGAAGTTTCACTCGGGCTG
GCAGTCTACAGCCGAAAAATCGGCGAACACGGTGACTTAGCAAGCCTCATCCGACATGAAGGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTGAAGGTTGGAGCTGGAGTCAGTGCCTCTTAAACTTGCCCACCGGTCTACTGAAGAGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTG
GAAGTTTGAACTCTGGACTCAACAGATTGAAATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAGGAACGTGCCCAGCCGACTGCAAGGAGTAAATTTGGATTACTAGAAAAACACAAGGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCC
AAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAGTGGCGCAAAGCAATATTCCCATGAGGAAATGTTATTAATGAAGACTCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGA
CTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAGTCTTATCAGCAGAAGAGAAGGCAATTATTCCTGCTCAATTGCCAAAGCGTATAAAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAG
AGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTTCACGAAACAACAGGACCAGTTTATAAATGGCGCAAGGAACGGAAAAGGTGATTTGTCCACTTCACTGGACATAGCTCGCATTATGATTGGGACATCATAGAAA
TAGAGCACACATCCCATTTTTGAAGAATTTGTATGAAAATGTCAACAGGTCAGCACTGCTACATTTTTATCAATGCAAAGAACGAGTTTTGGGTTCAAGAAGACATGATCTGAACTCTCTCTCTCTCTCTCTCTCTTTATATATATATAAGCAATCAATGGTTTCGAATATTACACATGGATGCTGTGCACATAGG
>TRINITY_DN129861_c8_g1_i6 from sample A1 / Example unspliced isoform:TCAGCATAGGGCTCAAGGCCGTTACACAACAATATAATCATTTGAGAGCTCAACATGTCACTTGTGAGAATCGAACCCGGGAGGGAAGGACAACAATCATTCCTCCCAACCACCCAAGCTACATTAAATTTAACATAAGTGATAATATTAATTACATCTTTTAATATTAATAATAATATATTTAAGAATAAGATTATTAA
ATATTATTATAACTAACCACACAAAAAGAGCCTTTATAAAGAGCCTTTATAGATAAATAATAAAGTAAAAAAAAAGTATATCAACGCAGAAACAATAAAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACG
GGCCCACGAACTGGTTTTTGCTTCGAATTCGACTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCCGGTCTAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTATGAAGTTTCACTCGGGCTG
GCAGTCTACAGgtaaatgtaacagatgaaattcggcgaacttaaccatttaaattctccctcctattaaattcgacgaatttcgattttcaagCCGAAAAATCGGCGAACACGGTGACTTAGCAAGCCTCATCCGACATGAAGGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTGAAGGTTGGAGCTGGAGTCAGT
GCCTCTTAAACTTGCCCACCGGTCTACTGAAGAGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTGGAAGTTTGAACTCTGGACTCAACAGATTGAAATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAGGAACGTGCCCAGCCGACTGCA
AGGAGTAAATTTGGATTACTAGAAAAACACAAGGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCCAAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAGTGGCGCAAAGCAATATTCCCA
TGAGGAAATGTTATTAATGAAGACTCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGACTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAGTCTTATCAGCAGAAGAGAAGG
CAATTATTCCTGCTCAATTGCCAAAGCGTATAAAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTTCACGAAACAACAGGACCAGTT
TATAAATGGCGCAAGGAACGGAAAAGGTGATTTGTCCACTTCACTGGACATAGCTCGCATTATGATTGGGACATCATAGAAATAGAGCACACATCCCATTTTTGAAGAATTTGTATGAAAATGTCAACAGGTCAGCACTGCTACATTTTTATCAATGCAAAGAACGAGTTTTGGGTTCAAGAAGACATGATCTGAACTCT
CTCTCTCTCTCTCTCTCTTTATATATATATAAGCAATCAATGGTTTCGAATATTACACATGGATGCTGTGCACATAGG
Intron 4 GCCGAAAAAT ... CGACATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.37 | 60.3 | 61.9 | 51.6 |
| A2 | 48.99 | 61.1 | 66.4 | 51.8 |
| A3 | 45.59 | 86.4 | 86.8 | 59.3 |
| A4 | 48.52 | 63.7 | 64.1 | 56.8 |
| A5 | 44.12 | 33.2 | 32 | 21 |
| A6 | 45.69 | 61.4 | 49.1 | 54.8 |
| A7 | 48.75 | 171.7 | 170.2 | 158.6 |
| A8 | 46.54 | 136.8 | 131.3 | 109.2 |
| A9 | 49.03 | 173.2 | 172.4 | 163 |
| A10 | 47.52 | 174.7 | 187.6 | 132.7 |
>TRINITY_DN121497_c2_g1_i5 from sample A3 / Example spliced isoformAAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACGGGCCCACGAACTGGTTTTTGCTTCGAATTCGACTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCTGGTC
TAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTGCAGGACGGCTATGAAGTTTCACTCGGGCTGGCAGTCTACAGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTGAAGGTTGGAGCTGGAGTCAGTGCCTCTTAAACTTGCCCAC
CGGTCTACTGAAGAGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTGGAAGTTTGAACTCTGGACTCAACAGATTGAAATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAGGAACGTGCCCAGCCGACTGCAAGGAGTAAATTTGGATTAC
TAGAAAAACACAAGGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCCAAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAGTGGCGCAAAGCAATATTCCCACGAGGAAATGTTATTAATG
AAGACTCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGACTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAGTCTTATCAGCAGAAGAGAAGGCAATTATTCCTGCTCAATT
GCCAAAGCGTATAAAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTTCACGAAACAACAGGACCAGTTTATAAATGGCGCAAGGAAC
GGAAAAGGTGATTTGTCCACTTCACTGGACATAGCTCGCATTATGATTGGGACATCATAGAAATAGAGCACACATCCCATTTTTGAAGAATTTGTATGAAAATGTCAACAGGTCAGCACTGCTACATTTTTATCAATGCAAGGAACGAGTTTTGGGC
>TRINITY_DN121497_c2_g1_i10 from sample A3 / Example unspliced isoform:AAATAATTGAAACCTAGTTCAAGGTCGGCTTGGAGACAAATTTTTTGACAAACTCAATGATACTCCCATTAAAATTATATGTCTGTTAAAATGGTTTTCCACGGGCCCACGAACTGGTTTTTGCTTCGAATTCGACTTTCAAGTGCATAGACGAGAGAAAGAGCACAACATCGATGGCAAGCTCTGCTGCAGTTCTGGTC
TAGGCCGTCGGGAGAAGCACAAACTCGCTCGACTTTTAATTTCTCTCGCAGCATTTGCCGATTTAGCGACGGCAGGGGCGGCTATGAAGTTTCACTCGGGCTGGCAGTCTACAgccgaaaaatcggcgaacacggtgacttagcaagcctcatccgacatgaagGGCTGAAGTTCAGGAAATCTGCACGTTGATCAACTG
AAGGTTGGAGCTGGAGTCAGTGCCTCTTAAACTTGCCCACCGGTCTACTGAAGAGGGCTTTAGAGCCTGAAGTGAAGTTTGAACAGCAGCAACTCAGCGGCTGGAAGTTTGAACTCTGGACTCAACAGATTGAAATTGACGTTATCTAGTTTTCAATTATGTCGTCATTAAGAAATGCTGTAAAGCGGAAGACTCACAAG
GAACGTGCCCAGCCGACTGCAAGGAGTAAATTTGGATTACTAGAAAAACACAAGGACTATGTACTTAGGGCTCGTGATTACCAGAAGAAGAAGGAAAACATCCAAAGACTTCAAGAGAAAGCTGCATCTAGAAACCCCGATGAATTTTATTTTAAGATGATCAACACTAGGACTGTTGATGGAGTGCACCGTCCACAGAG
TGGCGCAAAGCAATATTCCCACGAGGAAATGTTATTAATGAAGACTCAGGACATTCAGTATGTGCTTCAAAAAGCACAGAGTGAGAAGAAGAAAGCTGAGCGACTTCAGTCAGCACTTCATTCCATTGGTTGTCCTCCTTCAAACAGACATACTTATTTTGCTGAAGACAGGGAGGAGGCAAAAGAATTGGAACCAGCAG
TCTTATCAGCAGAAGAGAAGGCAATTATTCCTGCTCAATTGCCAAAGCGTATAAAAAAGAAAATGGCCGCAGCATACAAGGAGCTAGAGGAACGAAAGAAAAGAGCAGATGAGATGCAAAACATAGTTACCGAGATGAGTTTGCGAAGGGAGTTGATGGGGAAGGGTAGAAAAAGGAAACTCCGTGATGATGAAATTGTT
CACGAAACAACAGGACCAGTTTATAAATGGCGCAAGGAACGGAAAAGGTGATTTGTCCACTTCACTGGACATAGCTCGCATTATGATTGGGACATCATAGAAATAGAGCACACATCCCATTTTTGAAGAATTTGTATGAAAATGTCAACAGGTCAGCACTGCTACATTTTTATCAATGCAAGGAACGAGTTTTGGGC