sp|P10978|POLX_TOBAC ----> Retrovirus-related Pol polyprotein from transposon TNT 1-94
Intron 1 GTGAGTGAGA ... GTACTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.58 | 32 | 3 | 11 |
| A2 | 29.27 | 29 | 5 | 12 |
| A3 | 33.96 | 35 | 3 | 18 |
| A4 | 30.88 | 44.8 | 5.8 | 20 |
| A5 | 11.11 | 16 | 6 | 2 |
| A6 | 20.98 | 113 | 2 | 30 |
| A7 | 23.44 | 147 | 6 | 45 |
| A8 | 36.11 | 46 | 2 | 26 |
| A9 | 19.6 | 94.3 | 8.3 | 23 |
| A10 | 15.93 | 95 | 5 | 18 |
>TRINITY_DN104712_c0_g1_i2 from sample A1 / Example spliced isoformCAAGTCTATACATTCTATGCGGTTGTCATATTTCTAATTTTAGTAAAGAATATTTTTATTTGTTGAGGAAGCCAATTTTATTTTTTGCTTACAAAAATAAATTATAAATTGAGCCTCTGGCATGTGAAAGGAATTAAGTAATTTCCATCGCTATTCGGATATCTTTCTCACATGCAGCCATTTTTCGGTGTGGAAAGAGG
TATGGATCTCGCCAGCGAGTTTCTTCTACAGTTGATGTCAATCGATGAATACAAGCTTCACGGCGGTAACTATTTTGCCTGGAAATTTAGACTCAAAAATATTCTAGTACTGAGAAAATCATGGAGTATCGTTGATGGAGAGGAGCAGAGACCTGATGGGGATGAAGATAAACAAAAAGCCTACGATGACAGAGACAGAG
AAGCTCTGGCAATCATTGCCTTGTCCGTTTCAGATAATGTTATTCCCCACGTGCAAGGTGCAAAGACTTCCAAACAAGCTTGGGATGCCTTGAAGGCATTGTATGAGACTCCTAATAAAGTCAAGATTCCCTATTTGAGAAGGCAATTGTACAATCTGATGGTAGAAGGTGACTCTGTCATAGATCACCTCACCAAAGTC
AAAAGCATAAGAGCTCAATTGATTGATTTGGGTGAGGAGGTTGAAGATGTAGAGCTTGCATATATAACTCTTCAGTGTTTACCTCCATCTTTCCATGAGTTTGCTCAGGTAATGTATGGCATATCAACGGAAGATAATCTCTTGACATTTGATAAACTAGGAGAATCAATGTTGCGGTGGGAGATGAGAAAAAAGCTCCG
TGATGAAGAGCGAGGCTATACGAAGCATGAAGGTTCAAAGAAGGGCAACCCTAAGCAAAGTGACAAAGGGAAATGTTTTTATTGTGGTAAACCCGGCCACTTAGAGAAAAATTGTTGGAAAAAGAGGTCTGATTTTTCTCAGTCGGAGACGGACGATTTCATTTTTTGACAATCAAAGGGCTGTTCATTCGTTTCACAGA
AATCTTCTGGTCCACTAACACAATCCCCTAAAAAATTACAAGTATACAATGAGGCCTGAACAAATTTTGAGGAAATTCAAATTTTTAATTTTACACTTTGTAAACCTGTTTGAAGGTTTATTTCAAGTATTCCTACCAGGTTGTGTCTTTTGGGCCCTGATCTGCGGGGTTGCTCATCATTGTGATGGCTTAAGTTTGAG
TTGTAGTGTGCATAAAGGGCGTTTCACTGGCAAAAAAAATGTTCTTATCAAATTGCGAAACCTTAGAAAATTTGGGTCTGAATATTTCTTTTCATTGTGAACCTTCCTAGTTATTATTAGCTGAATTATTCAATAAAACTGTACCAAGAAAAACAAATCTTTTGTCACAAAAACTATTGTTTTACATATATTATGACATC
CTGAATGTCATTTCCAATAAATAGAAATTGGTATTTGACTAAACCTTGAGCTCTGTTGTTTTAACTAAAATTAGGTATCTAATGAAACTCAAGGATTTCTGTATTTTAAATGTAGCAGAGCTAAAATGAAAAGTTTATGACCATGCTTTTACCTATATTTATTACAGACTATTAAGTATGAATTTATTTGTAAGATTGGT
GGCTTCATATAGGAAATAAGTGTTGAAAATACATGCTTTACT
>TRINITY_DN104712_c0_g1_i1 from sample A1 / Example unspliced isoform:CAAGTCTATACATTCTATGCGGTTGTCATATTTCTAATTTTAGTAAAGAATATTTTTATTTGTTGAGGAAGCCAATTTTATTTTTTGCTTACAAAAATAAATTATAAATTGAGCCTCTGGCATGTGAAAGGAATTAAGTAATTTCCATCGCTATTCGGATATCTTTCTCACATGCAGCCATTTTTCGGTGTGGAAAGAGG
TATGGATCTCGCCAGCGAGTTTCTTCTACAGTTGATGTCAATCGgtgagtgagaagttcttgttaagacggttggttctcaaagatttttttttaagggtttactttttcttagggttttcttgtgaaaaattatattttatcatgtctgagagttttcaaggccttgttgtactgccagATGAATACAAGCTTCACGGC
GGTAACTATTTTGCCTGGAAATTTAGACTCAAAAATATTCTAGTACTGAGAAAATCATGGAGTATCGTTGATGGAGAGGAGCAGAGACCTGATGGGGATGAAGATAAACAAAAAGCCTACGATGACAGAGACAGAGAAGCTCTGGCAATCATTGCCTTGTCCGTTTCAGATAATGTTATTCCCCACGTGCAAGGTGCAAA
GACTTCCAAACAAGCTTGGGATGCCTTGAAGGCATTGTATGAGACTCCTAATAAAGTCAAGATTCCCTATTTGAGAAGGCAATTGTACAATCTGATGGTAGAAGGTGACTCTGTCATAGATCACCTCACCAAAGTCAAAAGCATAAGAGCTCAATTGATTGATTTGGGTGAGGAGGTTGAAGATGTAGAGCTTGCATATA
TAACTCTTCAGTGTTTACCTCCATCTTTCCATGAGTTTGCTCAGGTAATGTATGGCATATCAACGGAAGATAATCTCTTGACATTTGATAAACTAGGAGAATCAATGTTGCGGTGGGAGATGAGAAAAAAGCTCCGTGATGAAGAGCGAGGCTATACGAAGCATGAAGGTTCAAAGAAGGGCAACCCTAAGCAAAGTGAC
AAAGGGAAATGTTTTTATTGTGGTAAACCCGGCCACTTAGAGAAAAATTGTTGGAAAAAGAGGTCTGATTTTTCTCAGTCGGAGACGGACGATTTCATTTTTTGACAATCAAAGGGCTGTTCATTCGTTTCACAGAAATCTTCTGGTCCACTAACACAATCCCCTAAAAAATTACAAGTATACAATGAGGCCTGAACAAA
TTTTGAGGAAATTCAAATTTTTAATTTTACACTTTGTAAACCTGTTTGAAGGTTTATTTCAAGTATTCCTACCAGGTTGTGTCTTTTGGGCCCTGATCTGCGGGGTTGCTCATCATTGTGATGGCTTAAGTTTGAGTTGTAGTGTGCATAAAGGGCGTTTCACTGGCAAAAAAAATGTTCTTATCAAATTGCGAAACCTT
AGAAAATTTGGGTCTGAATATTTCTTTTCATTGTGAACCTTCCTAGTTATTATTAGCTGAATTATTCAATAAAACTGTACCAAGAAAAACAAATCTTTTGTCACAAAAACTATTGTTTTACATATATTATGACATCCTGAATGTCATTTCCAATAAATAGAAATTGGTATTTGACTAAACCTTGAGCTCTGTTGTTTTAA
CTAAAATTAGGTATCTAATGAAACTCAAGGATTTCTGTATTTTAAATGTAGCAGAGCTAAAATGAAAAGTTTATGACCATGCTTTTACCTATATTTATTACAGACTATTAAGTATGAATTTATTTGTAAGATTGGTGGCTTCATATAGGAAATAAGTGTTGAAAATACATGCTTTACT
Intron 2 GTGAGTGAGA ... AGTTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10 | 18 | 3 | 1 |
| A2 | 20.63 | 25 | 5 | 8 |
| A3 | 20.51 | 31 | 3 | 13 |
| A4 | 20.83 | 38 | 6 | 14 |
| A5 | 17.65 | 14 | 6 | 0 |
| A6 | 9.65 | 103 | 2 | 20 |
| A7 | 11.03 | 129 | 6 | 26 |
| A8 | 17.65 | 35 | 2 | 13 |
| A9 | 10 | 81 | 9 | 9 |
| A10 | 7.77 | 89 | 5 | 10 |
>TRINITY_DN35410_c0_g3_i1 from sample A6 / Example spliced isoformGTTGAGGAAGCCAATTTTATTTTTTGCTTACAAAAATAAATTATAAATTGAGCCTCTGGCATGTGAAAGGAATTAAGTAATTTCCATCGCTATTCGGATATCTTTCTCACATGCAGCCATTTTTCGGTGTGGAAAGAGGTATGGATCTCGCCAGCGAGTTTCTTCTACAGTTGATGTCAATCGGCCTTGTTGTACTGCCA
GATGAATACAAGCTTCACGGCGGTAACTATTTTGCCTGGAAATTTAGACTCAAAAATATTCTAGTACTGAGAAAATCATGGAGTATCGTTGATGGAGAGGAGCAGAGACCTGATGGGGATGAAGATAAACAAAAAGCCTACGATGACAGAGACAGAGAAGCTCTGGCAATCATTGCCTTGTCCGTTTCAGATAATGTTAT
TCCCCACGTGCAAGGTGCAAAGACTTCCAAACAAGCTTGGGATGCCTTGAAGGCATTGTATGAGACTCCTAATAAAGTCAAGATTCCCTATTTGAGAAGGCAATTGTACAATCTGATGGTAGAAGGTGACTCTGTCATAGATCACCTCACCAAAGTCAAAAGCATAAGAGCTCAATTGATTGATTTGGGTGAGGAGGTTG
AAGATGTAGAGCTTGCATATATAACTCTTCAGTGTTTACCTCCATCTTTCCATGAGTTTGCTCAGGTAATGTATGGCATATCAACGGAAGATAATCTCTTGACATTTGATAAACTAGGAGAATCAATGTTGCGGTGGGAGATGAGAAAAAAGCTCCGTGATGAAGAGCGAGGCTATACGAAGCATGAAGGTTCAAAGAAG
GGCAACCCTAAGCAAAGTGACAAAGGGAAATGTTTTTATTGTGGTAAACCCGGCCACTTAGAGAAAAATTGTTGGAAAAAGAGGTCTGATTTTTCTCAGTCGGAGACGGACGATTTCATTTTTTGACAATCAAAGGGCTGTTCATTCGTTTCACAGAAATCTTCTGGTCCACTAACACAATCCCCTAAAAAATTACAAGT
ATACAATGAGGCCTGAACAAATTTTGAGGAAATTCAAATTTTTAATTTTACACTTTGTAAACCTGTTTGAAGGTTTATTTCAAGTATTCCTACCAGGTTGTGTCTTTTGGGCCCTGATCTGCGGGGTTGCTCATCATTGTGATGGCTTAAGTTTGAGTTGTAGTGTGCATAAAGGGCGTTTCACTGGCAAAAAAAATGTT
CTTATCAAATTGCGAAACCTTAGAAAATTTGGGTCTGAATATTTCTTTTCATTGTGAACCTTCCTAGTTATTATTAGCTGAATTATTCAATAAAACTGTACCAAGAAAAACAAATCTTTTGTCACAAAAACTATTGTTTTACATATATTATGACATCCTGAATGTCATTTC
>TRINITY_DN35410_c0_g3_i3 from sample A6 / Example unspliced isoform:GTTGAGGAAGCCAATTTTATTTTTTGCTTACAAAAATAAATTATAAATTGAGCCTCTGGCATGTGAAAGGAATTAAGTAATTTCCATCGCTATTCGGATATCTTTCTCACATGCAGCCATTTTTCGGTGTGGAAAGAGGTATGGATCTCGCCAGCGAGTTTCTTCTACAGTTGATGTCAATCGgtgagtgagaagttctt
gttaagacggttggttctcaaagaattttttttaagggtttactttttcttagggttttcttgtgaaaaattatattttatcatggctgagagttttcaagGCCTTGTTGTACTGCCAGATGAATACAAGCTTCACGGCGGTAACTATTTTGCCTGGAAATTTAGACTCAAAAATATTCTAGTACTGAGAAAATCATGGA
GTATCGTTGATGGAGAGGAGCAGAGACCTGATGGGGATGAAGATAAACAAAAAGCCTACGATGACAGAGACAGAGAAGCTCTGGCAATCATTGCCTTGTCCGTTTCAGATAATGTTATTCCCCACGTGCAAGGTGCAAAGACTTCCAAACAAGCTTGGGATGCCTTGAAGGCATTGTATGAGACTCCTAATAAAGTCAAG
ATTCCCTATTTGAGAAGGCAATTGTACAATCTGATGGTAGAAGGTGACTCTGTCATAGATCACCTCACCAAAGTCAAAAGCATAAGAGCTCAATTGATTGATTTGGGTGAGGAGGTTGAAGATGTAGAGCTTGCATATATAACTCTTCAGTGTTTACCTCCATCTTTCCATGAGTTTGCTCAGGTAATGTATGGCATATC
AACGGAAGATAATCTCTTGACATTTGATAAACTAGGAGAATCAATGTTGCGGTGGGAGATGAGAAAAAAGCTCCGTGATGAAGAGCGAGGCTATACGAAGCATGAAGGTTCAAAGAAGGGCAACCCTAAGCAAAGTGACAAAGGGAAATGTTTTTATTGTGGTAAACCCGGCCACTTAGAGAAAAATTGTTGGAAAAAGA
GGTCTGATTTTTCTCAGTCGGAGACGGACGATTTCATTTTTTGACAATCAAAGGGCTGTTCATTCGTTTCACAGAAATCTTCTGGTCCACTAACACAATCCCCTAAAAAATTACAAGTATACAATGAGGCCTGAACAAATTTTGAGGAAATTCAAATTTTTAATTTTACACTTTGTAAACCTGTTTGAAGGTTTATTTCA
AGTATTCCTACCAGGTTGTGTCTTTTGGGCCCTGATCTGCGGGGTTGCTCATCATTGTGATGGCTTAAGTTTGAGTTGTAGTGTGCATAAAGGGCGTTTCACTGGCAAAAAAAATGTTCTTATCAAATTGCGAAACCTTAGAAAATTTGGGTCTGAATATTTCTTTTCATTGTGAACCTTCCTAGTTATTATTAGCTGAA
TTATTCAATAAAACTGTACCAAGAAAAACAAATCTTTTGTCACAAAAACTATTGTTTTACATATATTATGACATCCTGAATGTCATTTC