sp|Q9SX65|DNAT1_ARATH ----> 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1
Intron 1 GTAAGTCTGA ... GACTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 3 | 0 | 2 |
| A2 | 100 | 0 | 0 | 5 |
| A3 | 50 | 1 | 0 | 1 |
| A4 | 40 | 3 | 0 | 2 |
| A5 | 50 | 1 | 0 | 1 |
| A6 | 51.72 | 14 | 0 | 15 |
| A7 | 27.27 | 8 | 1 | 3 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 42.86 | 16 | 1 | 12 |
| A10 | 50 | 4 | 0 | 4 |
>TRINITY_DN43297_c0_g1_i6 from sample A9 / Example spliced isoformCAACAACTAGACCTGAAAGAGATCGTAACTTTATAAGTCATGGACGGCGGCTCTACGTCATACCAAACCTCTCATCATTTCAATGGGACACTTCCATAAATTCAAATTCGGACTGCCCATTGTGAACAATGCCCATATTGACCTAATAGAAAGGTTTCTGCAATTCAGTAGCAATCGATGGCAGTCAGTAATAACCGTTT
CGAGTGGAAGAAAGGCGACAGCAAATATCCTTTTGGCCATGGTTTGTCTCCAGTATTGGATTACATCGGGTTTGAGATGGAAAGGGTGTCAGCCACATTAATTGAAGGCCGATTTGTGGTATCTGAAAGGTCTGCTCAGGCATATGGAGTGCTACATGGAGGTATATCAGCCTTTCTTGCTGAGAGTCTTGGAAGTCTTG
GTGCTTCAATAGCGTCAGGGTTCCAGCAAGTTGCTGGAATAGAAGTTAGCACCAGTCATTTTCAGCCTGCTCCTGTTGGTATGGAAATTGAAGTAAAAGCAACTCCCATTCATATTGGGCACAGGTTACAAGTCTGGGAGGTGAAGCTTATTGCGGCGAAGAGTTCACGTGATGATCTACCGAAGCAAGAGTCTTCCAAA
ACATCAGAGCCTGGATTGATTGCACTAGCAAAGTTAACAGCTTCTAAGTTGTCTTCTAATGTTTCTGCCAAGTCTCAGGATTCCAAAGAGATTCCCTCTAAACTTTAGAAGCATCCTATAAAAATTGTAACATTGCTTTATAATCATGGTTGTATCGAACAAATTTTACCATAGCATTCTTTTTGGGGGTGCTTTTATTG
ATTCCATCTGTTATATCCTATAAAAATTGTAACATTGCTTTATAATCATGGTTGTATCGAACAAATTTTACCATAGCATTCTTTTTGGGGGTGCTTTTATTGATTCCATCTGTTATATCCTATTTTTATGCTTCCTTGTGCTTATTTGAACTGAAATCTTGCTCAACCTCCATGAATTACTACCTGTGTTTGTTATGTAC
TTGTATGTACTATGGCTCCCTCCACAATCATTTTTGAATTATTCTTGCAAATTGGCA
>TRINITY_DN43297_c0_g1_i5 from sample A9 / Example unspliced isoform:CAACAACTAGACCTGAAAGAGATCGTAACTTTATAAGTCATGGACGGCGGCTCTACGTCATACCAAACgtaagtctgaaataacgagccaaggattattttcctcataacgagtcagagcttaacagctaacattaaacatatagtaaggaaagaaaattcagaaattaccattttaaaattgatgaatttgcacacaga
atacgccacagtgacagtttgacttggcagCTCTCATCATTTCAATGGGACACTTCCATAAATTCAAATTCGGACTGCCCATTGTGAACAATGCCCATATTGACCTAATAGAAAGGTTTCTGCAATTCAGTAGCAATCGATGGCAGTCAGTAATAACCGTTTCGAGTGGAAGAAAGGCGACAGCAAATATCCTTTTGGCC
ATGGTTTGTCTCCAGTATTGGATTACATCGGGTTTGAGATGGAAAGGGTGTCAGCCACATTAATTGAAGGCCGATTTGTGGTATCTGAAAGGTCTGCTCAGGCATATGGAGTGCTACATGGAGGTATATCAGCCTTTCTTGCTGAGAGTCTTGGAAGTCTTGGTGCTTCAATAGCGTCAGGGTTCCAGCAAGTTGCTGGA
ATAGAAGTTAGCACCAGTCATTTTCAGCCTGCTCCTGTTGGTATGGAAATTGAAGTAAAAGCAACTCCCATTCATATTGGGCACAGGTTACAAGTCTGGGAGGTGAAGCTTATTGCGGCGAAGAGTTCACGTGATGATCTACCGAAGCAAGAGTCTTCCAAAACATCAGAGCCTGGATTGATTGCACTAGCAAAGTTAAC
AGCTTCTAAGTTGTCTTCTAATGTTTCTGCCAAGTCTCAGGATTCCAAAGAGATTCCCTCTAAACTTTAGAAGCATCCTATAAAAATTGTAACATTGCTTTATAATCATGGTTGTATCGAACAAATTTTACCATAGCATTCTTTTTGGGGGTGCTTTTATTGATTCCATCTGTTATATCCTATAAAAATTGTAACATTGC
TTTATAATCATGGTTGTATCGAACAAATTTTACCATAGCATTCTTTTTGGGGGTGCTTTTATTGATTCCATCTGTTATATCCTATTTTTATGCTTCCTTGTGCTTATTTGAACTGAAATCTTGCTCAACCTCCATGAATTACTACCTGTGTTTGTTATGTACTTGTATGTACTATGGCTCCCTCCACAATCATTTTTGAA
TTATTCTTGCAAATTGGCA
Intron 2 GTAAGTCTGA ... TTGCACACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 1 | 0 | 1 |
| A2 | 83.33 | 1 | 0 | 5 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 50 | 1 | 0 | 1 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 75 | 2 | 0 | 6 |
| A7 | -1 | 0 | 1 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 50 | 4 | 1 | 4 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN43297_c0_g1_i4 from sample A9 / Example spliced isoformCAACAACTAGACCTGAAAGAGATCGTAACTTTATAAGTCATGGACGGCGGCTCTACGTCATACCAAACAATACGCCACAGTGACAGTTTGACTTGGCAGCTCTCATCATTTCAATGGGACACTTCCATAAATTCAAATTCGGACTGCCCATTGTGAACAATGCCCATATTGACCTAATAGAAAGGTTTCTGCAATTCAGT
AGCAATCGATGGCAGTCAGTAATAACCGTTTCGAGTGGAAGAAAGGCGACAGCAAATATCCTTTTGGCCATGGTTTGTCTCCAGTATTGGATTACATCGGGTTTGAGATGGAAAGGGTGTCAGCCACATTAATTGAAGGCCGATTTGTGGTATCTGAAAGGTCTGCTCAGGCATATGGAGTGCTACATGGAGGTATATCA
GCCTTTCTTGCTGAGAGTCTTGGAAGTCTTGGTGCTTCAATAGCGTCAGGGTTCCAGCAAGTTGCTGGAATAGAAGTTAGCACCAGTCATTTTCAGCCTGCTCCTGTTGGTATGGAAATTGAAGTAAAAGCAACTCCCATTCATATTGGGCACAGGTTACAAGTCTGGGAGGTGAAGCTTATTGCGGCGAAGAGTTCACG
TGATGATCTACCGAAGCAAGAGTCTTCCAAAACATCAGAGCCTGGATTGATTGCACTAGCAAAGTTAACAGCTTCTAAGTTGTCTTCTAATGTTTCTGCCAAGTCTCAGGATTCCAAAGAGATTCCCTCTAAACTTTAGAAGCATCCTATAAAAATTGTAACATTGCTTTATAATCATGGTTGTATCGAACAAATTTTAC
CATAGCATTCTTTTTGGGGGTGCTTTTATTGATTCCATCTGTTATATCCTATAAAAATTGTAACATTGCTTTATAATCATGGTTGTATCGAACAAATTTTACCATAGCATTCTTTTTGGGGGTGCTTTTATTGATTCCATCTGTTATATCCTATTTTTATGCTTCCTTGTGCTTATTTGAACTGAAATCTTGCTCAACCT
CCATGAATTACTACCTGTGTTTGTTATGTACTTGTATGTACTATGGCTCCCTCCACAATCATTTTTGAATTATTCTTGCAAATTGGCA
>TRINITY_DN43297_c0_g1_i5 from sample A9 / Example unspliced isoform:CAACAACTAGACCTGAAAGAGATCGTAACTTTATAAGTCATGGACGGCGGCTCTACGTCATACCAAACgtaagtctgaaataacgagccaaggattattttcctcataacgagtcagagcttaacagctaacattaaacatatagtaaggaaagaaaattcagaaattaccattttaaaattgatgaatttgcacacagA
ATACGCCACAGTGACAGTTTGACTTGGCAGCTCTCATCATTTCAATGGGACACTTCCATAAATTCAAATTCGGACTGCCCATTGTGAACAATGCCCATATTGACCTAATAGAAAGGTTTCTGCAATTCAGTAGCAATCGATGGCAGTCAGTAATAACCGTTTCGAGTGGAAGAAAGGCGACAGCAAATATCCTTTTGGCC
ATGGTTTGTCTCCAGTATTGGATTACATCGGGTTTGAGATGGAAAGGGTGTCAGCCACATTAATTGAAGGCCGATTTGTGGTATCTGAAAGGTCTGCTCAGGCATATGGAGTGCTACATGGAGGTATATCAGCCTTTCTTGCTGAGAGTCTTGGAAGTCTTGGTGCTTCAATAGCGTCAGGGTTCCAGCAAGTTGCTGGA
ATAGAAGTTAGCACCAGTCATTTTCAGCCTGCTCCTGTTGGTATGGAAATTGAAGTAAAAGCAACTCCCATTCATATTGGGCACAGGTTACAAGTCTGGGAGGTGAAGCTTATTGCGGCGAAGAGTTCACGTGATGATCTACCGAAGCAAGAGTCTTCCAAAACATCAGAGCCTGGATTGATTGCACTAGCAAAGTTAAC
AGCTTCTAAGTTGTCTTCTAATGTTTCTGCCAAGTCTCAGGATTCCAAAGAGATTCCCTCTAAACTTTAGAAGCATCCTATAAAAATTGTAACATTGCTTTATAATCATGGTTGTATCGAACAAATTTTACCATAGCATTCTTTTTGGGGGTGCTTTTATTGATTCCATCTGTTATATCCTATAAAAATTGTAACATTGC
TTTATAATCATGGTTGTATCGAACAAATTTTACCATAGCATTCTTTTTGGGGGTGCTTTTATTGATTCCATCTGTTATATCCTATTTTTATGCTTCCTTGTGCTTATTTGAACTGAAATCTTGCTCAACCTCCATGAATTACTACCTGTGTTTGTTATGTACTTGTATGTACTATGGCTCCCTCCACAATCATTTTTGAA
TTATTCTTGCAAATTGGCA