sp|Q8VY15|RBM25_ARATH ----> RNA-binding motif protein 25
Intron 1 GTAAGTTAAT ... AATCTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.59 | 5 | 23 | 16 |
| A2 | 100 | 0 | 17 | 3 |
| A3 | 89.47 | 2 | 32 | 2 |
| A4 | 100 | 0 | 16 | 2 |
| A5 | 100 | 0 | 14 | 1 |
| A6 | 87.18 | 5 | 48 | 20 |
| A7 | 76.83 | 19 | 89 | 37 |
| A8 | 91.04 | 9 | 132 | 51 |
| A9 | 81.82 | 13 | 85 | 32 |
| A10 | 79.13 | 12 | 70 | 21 |
>TRINITY_DN39813_c0_g2_i4 from sample A7 / Example spliced isoformTGACGGATTTCAGTTAGTTTTCTCAGACATTGAGGCATAGATGCTGTCAATTCCACAGTTCCCTTGGTATTTTAGTGTTTTCTGAGGCTACTTGAAGGTTTTTGTTGGCAATATTTTACTTAAATGCTTCATATGTTTGTAACCAAGCTGGTAGAATTTGGCATTATGCCTTTGAGAGTTATTTGACTCCAATCTTTCCC
CTTGACGTGGAGTGAAAAGAGCAATGTAAAGCAAGTGTATACTTCATTTTCCATTCTTTTCTAGTAAACAGGATATTAACCATAAATAACAGGAAGTCTTGTTTATTCAGAGACTGCTTCCAGATCAGACTGTTGATTCTGTATGGTTCTTTGGGTTTGGAAGGTTTTGTTGTTTATATGATGAAATATTTTTTCAGTAG
GTCCCAGAGTGTATTGGACCTTGGTAAATCCAGAATCAGCG
>TRINITY_DN39813_c0_g2_i6 from sample A7 / Example unspliced isoform:GTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCAAGCGAAATAAGACGCAATGAAGTCTGCAGTGATCATGGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATG
GGTGTGATGCCTCTTCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTCAGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCT
TCTTGAGCTTTGTGGACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAATTCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTT
TTGTTGAGAAGAAAAGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGAGTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAAT
GATGCTGATCGGGAGGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCCTCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGATAT
TCATGATGAAAAAATCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACAGAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTATGAGAGGG
AGCGAGAAAGAGAGAGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGGGAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGGAAGAAAGT
GATGATGAGGATTGGAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGACCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGATCAACATGA
GTCTGCAAGCTTGCCTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAGGATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGGTGCACCTA
CTCGAAAGCTAGGCTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTGCAGCACCA
GACTTTGCAAAGCGTATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAAGGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAGAGGGATAG
GAGTCGCGAGAAATATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTCAAAGAAAA
TAACAGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATGCTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCA
AAGAACTGACGGATTTCAGTTAGTTTTCTgtaagttaatttaattgtctttatttagggtacattcaatttcactgtttgcccagtttctactttgactaaaaaattataaatgaatgtgagcattacatctttttgatcacaaattgaattcctcaagatttggctgtttaatcttatagCAGACATTGAGGCATAGAT
GCTGTCAATTCCACAGTTCCCTTGGTATTTTAGTGTTTTCTGAGGCTACTTGAAGGTTTTTGTTGGCAATATTTTACTTAAATGCTTCATATGTTTGTAACCAAGCTGGTAGAATTTGGCATTATGCCTTTGAGAGTTATTTGACTCCAATCTTTCCCCTTGACGTGGAGTGAAAAGAGCAATGTAAAGCAAGTGTATAC
TTCATTTTCCATTCTTTTCTAGTAAACAGGATATTAACCATAAATAACAGGAAGTCTTGTTTATTCAGAGACTGCTTCCAGATCAGACTGTTGATTCTGTATGGTTCTTTGGGTTTGGAAGGTTTTGTTGTTTATATGATGAAATATTTTTTCAGTAGGTCCCAGAGTGTATTGGACCTTGGTAAATCCAGAATCAGCG
Intron 2 GTAAGTGAAA ... TGCTATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.85 | 18 | 7 | 4.3 |
| A2 | 25 | 12 | 4 | 4 |
| A3 | 35.29 | 11 | 4 | 8 |
| A4 | 13.21 | 23 | 7 | 0 |
| A5 | 25.93 | 10 | 5 | 2 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 12.2 | 18 | 0 | 5 |
| A8 | 23.08 | 5 | 1 | 2 |
| A9 | 13.73 | 22 | 4 | 3 |
| A10 | 12.5 | 14 | 0 | 4 |
>TRINITY_DN102666_c0_g1_i2 from sample A5 / Example spliced isoformGAAGGAGGAATGAAAGGCTGTGCCAGCGTCACTAGCAGTATCCTCTTGTCTGCAGTGTCTGAAAGCAAGCCCACATTGTAGGTTCCTTTCTTCTAGATATTAAGAACATTATGACATGCGAGGGGTTCCTTCATTTGAACAAGAACGGATCACCTTTAACGAGCAAGTACTGAGGTATTGGTGTTGTTTGTATTTCATTT
GTTTCACTGTTATAAACTTATATTTAGGAAATGATTTTCTAAACTTTTAGGTAAGCTGATAGCTAAGGAAGACTTGTTGTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCAAGCGAAATAAGACGCAATGAAGTCTGCAGTGATCAT
GGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATGGGTGTGATGCCTCTTCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTCAGATCCTGCTTCAAAGGGTGCCATACCAATCATCCC
TCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCTTCTTGAGCTTTGTGGACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAATTCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCC
TTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTTTTGTTGAGAAGAAAAGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGAGTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATC
GGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAATGATGCTGATCGGGAGGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCCTCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGG
AAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGATATTCATGATGAAAAAATCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACAGAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATA
GTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTATGAGAGGGAGCGAGAAAGAGAGAGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGGGAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAG
CGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGGAAGAAAGTGATGATGAGGATTGGAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGACCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGC
AGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGATCAACATGAGTCTGGAAGCTTGCCTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAGGATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGA
ATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGGTGCACCTACTCGAAAGCTAGGCTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCCATT
GATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTGCAGCACCAGACTTTGCAAAGCGTATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAAGGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCA
GAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAGAGGGATAGGAGTCGCGAGAAATATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATAGATACCATTCCTAAGACGAAAGAGGCTCTAT
TTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTCAAAGAAAATAACAGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATGCTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCA
GAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGAACTGACGGATTTCAGTTAGTTTTCTGTCCGTAAGGAGAATATCAAAATTGATGGTCTTTATCCATCCCTTTCCCTTTGCAAGGAGAGATGCTGAAATCTGCTCTTTTATTGGCCAGAC
ATTTTCAATTGGTGGTCGTGAATTGCAGGTCAGTAAAAGGAGAATATCAAATGGCTGGTCCCATATTTTGTCTCAAGTTTCATTTATCAGCTTGATGATGTGGCATAGCTGTATCATGATCTTGTCGATCATGTTTATGTAATTGAAAATTGACTTCTACTTCGTGATGGGCTTGTGGAGTATGCTGCTGTAGATTTTCT
CTGCCTGTTTTTGGACTGATGATTGCCTGTTTGTTTGGGGTCATTTTGAAGATTATATGAAAGTAGAATTGGACAATTGTCCAAGGTTGTCTCTTAAAGAATATTATACGAATCTCTGGTCACAATTTCTAATCTTTGAAATACATGATACAACTTGCAAAATTAACATCACTCACATTCTTTGTATGATAAAGTTGCAA
ATGTACACAAGAAAATGAGGGTCATTTTACATTTATAAGAATGACAGAGTGAAGGTGGATATGTAGTTGATCT
>TRINITY_DN102666_c0_g1_i1 from sample A5 / Example unspliced isoform:GAAGGAGGAATGAAAGGCTGTGCCAGCGTCACTAGCAGTATCCTCTTGTCTGCAGTGTCTGAAAGCAAGCCCACATTGTAGGTTCCTTTCTTCTAGATATTAAGAACATTATGACATGCGAGGGGTTCCTTCATTTGAACAAGAACGGATCACCTTTAACGAGCAAGTACTGAGGTATTGGTGTTGTTTGTATTTCATTT
GTTTCACTGTTATAAACTTATATTTAGGAAATGATTTTCTAAACTTTTAGGTAAGCTGATAGCTAAGGAAGACTTGTTGTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCAAGCGAAATAAGACGgtaagtgaaatggcctgatatt
ttgttgtgaattgaattatttgttcatttgcattctggactatggattttgttagcaaacattctcattcctatgttgctatgtagCAATGAAGTCTGCAGTGATCATGGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATGGGTGTGATGCCTCT
TCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTCAGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCTTCTTGAGCTTTGTG
GACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAATTCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTTTTGTTGAGAAGAAA
AGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGAGTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAATGATGCTGATCGGGA
GGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCCTCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGATATTCATGATGAAAAAA
TCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACAGAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTATGAGAGGGAGCGAGAAAGAGAG
AGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGGGAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGGAAGAAAGTGATGATGAGGATTG
GAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGACCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGATCAACATGAGTCTGGAAGCTTGC
CTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAGGATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGGTGCACCTACTCGAAAGCTAGGC
TTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTGCAGCACCAGACTTTGCAAAGCG
TATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAAGGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAGAGGGATAGGAGTCGCGAGAAAT
ATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTCAAAGAAAATAACAGAATTTCTA
GGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATGCTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGAACTGACGGAT
TTCAGTTAGTTTTCTGT
Intron 3 GTGCCTTCCC ... GCACCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.12 | 22 | 7.5 | 5 |
| A2 | 45.27 | 16 | 10.5 | 16 |
| A3 | 21.14 | 13 | 2 | 5 |
| A4 | 23.55 | 25 | 4.5 | 11 |
| A5 | 30.4 | 16 | 4 | 10 |
| A6 | 25 | 3 | 0 | 2 |
| A7 | 23 | 25 | 6 | 9 |
| A8 | 26.32 | 7 | 2 | 3 |
| A9 | 16.25 | 32 | 2.5 | 10 |
| A10 | 26.65 | 22 | 1 | 15 |
>TRINITY_DN107436_c0_g1_i1 from sample A3 / Example spliced isoformCTTCACTGCTGAACCATGACTGCATTGGGAAATTCTTTTTCTTTTTGGAAGTACGCTTATATATTTTTTATTTTATTTTAACGAATAGACTTATATGTAGACAGCTTATTAACAGATAGGTTGCCGCCAAGGAGAAAATAGTTGGAGTGATGAAAATTCCTTCCCCTAAGCCTAGATTTTCACACTTATGAGCCAGTCAC
GTGAGTCAAACTTGAGTCAGATTTGCAACTTTCCAAAGTCAGTTCTGGTAGCCTGTCTGTAAAAGGCACACAGAATACACTCGTTTGGCTTGTTTTTCTGATCCGATTTTGCCGCAGACACTCAGCAGACCTGCCAACTGTCCAAGATCTGTGGTTTTTTGTAGTATGTAGTGTCATCTTTGTACTTTTAAATGATATAA
TATAAAAAATTTGCACGATCTGGACATTCTAAACATTCGTATTAATGAAAGACAATTTATTTTTTTGAAATTTTCTGAATGTTTTTTTCCCGAGTTTATCGGACTCTTCAGCCTTGCTGAGTCATTCTCCAAGACTAGTGTAGTAACTTTGATTGCTAATAAGACTGTCATTAAACTAGTACTATATAGTCCAAAATATA
GCTCTAAGGGGTTGAGCTAGTACAATAAACTGCCAAATAACAAGCTTTTAAAATTTTTAAGGGAATGGACCAGAACTCCTGCCAGCTCAGGCACTGGGTGCTGCCATAGCTGCAAAAGGTGGCGGTTTGTCATTGCTTCCTTTTGTGGGCTATCCAATGTGCATCTAAAAAGTATGTGTTCCCATTGCAATTCCAATATT
TGTATCAAAATTGATACTCTAAAAAGCATCAGAAAACTAATGAAATAGAACATACTTTCGGGCATTTATTGGAAAACAAATTGCTGTTTGAACACTGTATTGGATGGGGGGAATCTGGAAGGTGTGTAGAATATCTATTCTGTGTTGGTGTTTCTGTTGTTGATCAATTGAAGAGTCTAGCTTGTAGGAGCATTGCAATT
AGGATGAGAATGGGAATGAGAAAATAATTCATCTTTACTTTAGGCAATCATAGTGATGGTTATGGATTCTAAATCATTGTTGTTACAGTGTAGTTTTGACAGAGCGAATAATTTGAAATTATTCTTTCATGGAACACACTCGATATATGATGGTAATTGTAACTCTTTTAAGCATTTACTGTACTAGATAAAGATACAGA
AAGATTGCCACCACACTCATCTAGTTATATTTATGCATTTGATATTGGAATGGTAAATATAACTTGTTCAATAATTACTAGATCAATGTATGGAATATAGAAATCAGTGTAGGATTTGTATTGGGCAAGTTCTGAACTTGATTTACTTAATCATCAGATTCTGTGGGTGTTTTAAATAATGTAAACTGTGCAAGATAATT
CAAAATTAATTTATTTTATTGAAGCAATATCGTAAAAAGAGTGGAAATAGGGTGAGTTAATAAATAGATGAAGGGCATGATATGCCTTGAATAGAAGAAAGAGCAGCAGAACAGCAGGCCTGTAGGTTAGCATGGGATGGATGAACGAGTACAATGCAAACCGATGACGGGATGTTTTCTCCTACAGTATCCGAATTTTA
TGGTGAGCATGGATAGAGCGCCATTGCAGCTGGTTAAAGAGCCCTCTACATCATCTCTTGTGGTATGCATAAATTCCCCACATATAGTTGTAGTAGTCGTAAAACAGCACTTTGTCTGCTGTTTTAGTACTTTTCCTGCAATACTTTCTGCAACAATCTTCTTTAGAGTGGATACACAGATATTCGAGCTCTTTGGGTAT
TTGAATTTCCCTTTGGTTTAAGATTTGTCAAATTTCGAAGGAGGAATGAAAGGCTGTGCCAGCGTCACTAGCAGTATCCTCTTGTCTGCAGTGTCTGAAAGCAAGCCCACATTGTAGGTTCCTTTCTTCTAGATATTAAGAACATTATGACATGCGAGGGGTTCCTTCATTTGAACAAGAACGGATCACCTTTAACGAGC
AAGTACTGAGGTATTGGTGTTGTTTGTATTTCATTTGTTTCACTGTTATAAACTTATATTTAGGAAATGATTTTCTAAACTTTTAGGTAAGCTGATAGCTAAGGAAGACTTGTTGTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCA
AGCGAAATAAGACGCAATGAAGTCTGCAGTGATCATGGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATGGGTGTGATGCCTCTTCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTC
AGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCTTCTTGAGCTTTGTGGACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAAT
TCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTTTTGTTGAGAAGAAAAGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGA
GTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAATGATGCTGATCGGGAGGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCC
TCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGATATTCATGATGAAAAAATCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACA
GAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTATGAGAGGGAGCGAGAAAGAGAGAGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGG
GAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGGAAGAAAGTGATGATGAGGATTGGAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGA
CCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGATCAACATGAGTCTGCAAGCTTGCCTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAG
GATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGGTGCACCTACTCGAAAGCTAGGCTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACC
CATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTGCAGCACCAGACTTTGCAAAGCGTATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAA
GGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAGAGGGATAGGAGTCGCGAGAAATATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGT
TAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTCAAAGAAAATAACAGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATG
CTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGAACTGACGGATTTCAGTTAGTTTTCTGTCCGTAAGGAGAATATCAAAATTGATGGTCTTTATCCATCCCTTTCCCTTTGCAAG
GAGAGATGCTGAAATCTGCTCTTTTATTGGCCAGACATTTTCAATTGGTGGTCGTGAATTGCAGGTCAGTAAAAGGAGAATATCAAATGGCTGGTCCCATATTTTGTCTCAAGTTTCATTTATCAGCTTGATGATGTGGCATAGCTGTATCATGATCTTGTCGATCATGTTTATGTAATTGAAAATTGACTTCTACTTCG
TGATGGGCTTGTGGAGTATGCTGCTGTAGATTTTCTCTGCCTGTTTTTGGACTGATGATTGCCTGTTTGTTTGGGGTCATTTTGAAGATTATATGAAAGTAGAATTGGACAATTGTCCAAGGTTGTCTCTTAAAGAATATTATACGAATCTCTGGTCACAATTTCTAATCTTTGAAATACATGATACAACTTGCAAAATT
AACATCACTCACATTCTTTGTATGATAAAGTTGCAAATGTACACAAGAAAATGAGGGTCATTTTACATTTATAAGAATGACAGAGTGAAGGTGGATATGTAGTTGATCTCTGTTCTGGTTTCTTTATATCTGAAGAAGTGCATGTAGAACCCAATATGTAAAACAACACAACGGGAAACAACCAGAACAGAGATCAACTA
AATGCAATAGTAGCACGTTCATTGTGTTTGGAGAAGTTTGAATGTTCTTTTTGACTGCTCGTCTTTGAAAAGTAACTGTAACCAAGGGTTGCAGGTTGGAAACAAGTGTAACCTTTACAATGGATGTAATTTAGATATTTGCTTATTTATTTTTAGAGTGCAGATTTCCCTTGGGTCACAATTTGTATGTGTAGCCTTTG
CAATAAGTGTTATTTAGGTAATTTCTTATTCATTTGAGAGTGCAGATTATCTGTGGTTAATAATGTGTATACAAGTTTAGGGATAACACTAGGTTTTTAGTTTTCCTAACATTTAGAGTGGACATCATTCATCACCAGGGAGAATGACAGCTCATCAAGGATGACATGACGCAAATCGACTGGAAGGAAAATAAGTGGTA
GAGGTGAAATCGAAGTTAGGTAATAATGAAAATAAGTTTTGGTATTTTACTTTTTAAGAATAAAAAAGTTCTTATTACCTATATAGGTTTATGAAAGTTATACAATTTCCAGGTTTGACAATGCTTTCTGAATGAATTTCACTTATCAAAATGTGGAGAATGCTTGCTATTCAAAGAATTCTTGATAGAACAAATCACCT
AATAATAAGACTTGTCCATGTACTTATTATCCCAAGAAAAAATTTCAACTTAAAATCCCAGGAAGGAAAATGTTACATTAAAAAATTACTGGAGCACTATTT
>TRINITY_DN107436_c0_g1_i4 from sample A3 / Example unspliced isoform:CGGTAAGTGAAATGGCCTGATATTTTGTTGTGAATTGAATTATTTGTTCATTTGCATTCTGGACTATGGATTTTGTTAGCAAACATTCTCATTTCTATGTTGCTATGTAGCAATGAAGTCTGCAGTGATCATGGAGgtgccttccctcccacctataatatctgtttctgtataagtgctgctcactatgatgtgtttgt
ttgattattggaagtgttttatgctttaacataaagattgtcccgtgcttggtgttgcacctgcagGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATGGGTGTGATGCCTCTTCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTG
AAGTTTCCTCCTCCGGCTACAGCTTCAGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCTTCTTGAGCTTTGTGGACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTAC
CCCAAAAGGATTTGGGTTTTGCGAATTCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTTTTGTTGAGAAGAAAAGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTG
ACAAGGAAGAAGAAACTGCACCAGGAGTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAATGATGCTGATCGGGAGGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAG
AGGGCAAAGCTGAAGCCTCTTCCCCCTCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGATATTCATGATGAAAAAATCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGA
AAGGCCTGAGACAAGCTCATCTGACAGAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTATGAGAGGGAGCGAGAAAGAGAGAGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAG
AGCGCCTTTATGAAGAACGTGAAAGGGAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGGAAGAAAGTGATGATGAGGATTGGAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAA
AGAAGGCAACGGGAGAAGGAAGATGACCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGATCAACATGAGTCTGCAAGCTTGCCTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGA
GGGTTATGGGAGTGATTCTGGAGAAGGATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGGTGCACCTACTCGAAAGCTAGGCTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTT
TTCATCAGGAGGATGATGAAGATACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTGCAGCACCAGACTTTGCAAAGCGTATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGAT
AGAAGCAGAAAACAAAGTCCTGAAAAGGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAGAGGGATAGGAGTCGCGAGAAATATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAA
CAAGAAGCTTTTGGATGCGAAGCAGTTAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTCAAAGAAAATAACAGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCA
AGAAGCACGTGCCTGCAGCCCATATGCTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGAACTGACGGATTTCAGTTAGTTTTCTGTAAGTTAATTTAATTGTCTTTATTTAGGGT
ACATTCAATTTCACTGTTTGCCCAGTTTCTACTTTGACTAAAAAATTATAAATGAATGTGAGCATTACATCTTTTTGATCACAAATTGAATTCCTCAAGATTTGGC
Intron 4 GTATGCATAA ... TTGTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 85.37 | 3 | 24 | 11 |
| A2 | 92 | 2 | 37 | 9 |
| A3 | 78.26 | 5 | 22 | 14 |
| A4 | 74.19 | 4 | 11 | 12 |
| A5 | 87.5 | 1 | 12 | 2 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 100 | 0 | 0 | 1 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 46.67 | 4 | 5 | 2 |
| A10 | 83.33 | 1 | 6 | 4 |
>TRINITY_DN35604_c0_g1_i3 from sample A9 / Example spliced isoformCCTTGACCAAAATACCGAACCGTAGGCCCATGCCTTTCTCATTAGATCTGATTTCTCTTGTTTGTTCCTTCAAAGGGCTCAAATAAACAATTGAAACGCTCCCTTATTCATTAAATCCGAATGTAAAGTGAAAAAACTCTTCGAACCCCTGTACTGCTACTACGAAGGGACTCATTTAAGTTAGTAGGGGAGCAGGGTAT
AAGGCTTGGAAGGGCTTTGGATGTCGCCATGGCTGTCTCGCCATCGTCATCTTCCATTGAAGCAATTACAGCAATGAAGCAACCGCAGCCAGATGCTTCGGCGTCCCACGGAATTGAACCCGCGACTTCTCAGTCTCAGCAGATGCCGGCGGGGGCTCCGTTTTCATCAGTGCCCCAACCGCAACAGGCGAATAATAACA
ATAACAATCACAATGCGTTCGCCACTCCGCCACCTCCCGGTATTATGCAACCCTATGCACAAATTGGTCCCCCGCGGGGCTCAGTTCAGCCGCCGCAGGTGGCGCCCATTCCGTTCTACAGGCCACTGAGTGCTCCTTCCCTGGCGTCCGCCGTTCAAAACCCCCCTGCCCTACAACCCCCCGGCGTGAGCTCTGCTTCT
GCGCCCCAAACCCTAAGCCAAACCCCACAACAGCATCAGCAACATAATCCTCAAATCCTTGGTCCTTCAAACCCTCATAATCAGGTTCTAGGGTTTGGGCAGCAGGCACCGCCAGGTACTCCGGGTTCGTCGACTATCCCGGTTTCTCCCATTCGCCCTCCAGGGTTGTTTCCGGTGCCCGCCTCGCCGCAGTATCAGCA
GCAGCCTCTACGGCCGTACCCGACGACGCCGAACGGTTACAGCAGCATGCCGCTGCCTGGCCCGCCGGGCACCCAGCCACAGCAACAGCCGCAGATGATGAATCCGTCGGTATCCGAATTTTATGGTGAGCATGGAAAGAGCGCCATTGCAGCTGGTTAAAGAGCCCTCTACATCATCTCTTGTGTGTCTGAAAGCAAGC
CCACATTGTAGGTTCCTTTCTTCTAGATATTAAGAACATTATGACATGCGAGGGGTTCCTTCATTTGAACAAGAACGGATCACCTTTAACGAGCAAGTACTGAGGTATTGGTGTTGTTTGTATTTCATTTGTTTCACTGTTATAAACTTATATTTAGGAAATGATTTTCTAAACTTTTAGGTAAGCTGATAGCTAAGGAA
GACTTGTTGTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCAAGCGAAATAAGACGCAATGAAGTCTGCAGTGATCATGGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGG
GAACTATGGGTGTGATGCCTCTTCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTCAGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTA
CTCTCTCTTCTTGAGCTTTGTGGACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAATTCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTT
GGAGCGTTTTGTTGAGAAGAAAAGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGAGTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCA
TTGTAAATGATGCTGATCGGGAGGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCCTCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAG
AGTGATATTCATGATGAAAAAATCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACAGAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTA
TGAGAGGGAGCGAGAAAGAGAGAGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGGGAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGG
AAGAAAGTGATGATGAGGATTGGAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGACCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGAT
CAACATGAGTCTGCAAGCTTGCCTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAGGATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGG
TGCACCTACTCGAAAGCTAGGCTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTG
CAGCACCAGACTTTGCAAAGCGTATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAAGGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAG
AGGGATAGGAGTCGCGAGAAATATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTC
AAAGAAAATAACAGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATGCTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTT
CCAAGGCAAAGAACTGACGGATTTCAGTTAGTTTTCTGTAAGTTAATTTAATTGTCTTTATTTAGGGTACATTCAATTTCACTGTTTGCCCAGTTTCTACTTTGACTAAAAAATTATAAATGAATGTGAGCATTACATCTTTTTGATCACAAATTGAATTCCTCAAGATTTGGCTGTTTAATCTTATAGCAGACATTGAG
GCATAGATGCTGTCAATTCCACAGTTCCCTTGGTATTTTAGTGTTTTCTGAGGCTACTTGAAGGTTTTTGTTGGCAATATTTTACTTAAATGCTTCATATGTTTGTAACCAAGCTGGTAGAATTTGGCATTATGCCTTTGAGAGTTATTTGACTCCAATCTTTCCCCTTGACGTGGAGTGAAAAGAGCAATGTAAAGCAA
GTGTATACTTCATTTTCCATTCTTTTCTAGTAAACAGGATATTAACCATAAATAACAGGAAGTCTTGTTTATTCAGAGACTGCTTCCAGATCAGACTGTTGATTCTGTATGGTTCTTTGGGTTTGGAAGGTTTTGTTGTTTATATGATGAAATATTTTTTCAGTAGGTCCCAGAGTGTATTGGACCTTGGTAAATCCAGA
ATCAGCGATTGAACTTGATTTATGTTTCCTATGAATTTTGTGCATCTCCTGACTTATAGTAAATGGAGATACTCTTAAGCAAAGTTATCAGAACTGGACCATACTGGAACTGAC
>TRINITY_DN35604_c0_g1_i5 from sample A9 / Example unspliced isoform:GGTAAATATAACTTGTTCAATAATTACTAGATCAATGTATGGAATATAGAAATCAGTGTAGGATTTGTATTGGGCAAGTTCTGAACTTGATTTACTTAATCATCAGATTCTGTGGGTGTTTTAAATAATGTAAACTGTGCAAGATAATTCAAAATTAATTTATTTTATTGAAGCAATATCGTAAAAAGAGTGGAAATAGG
GTGAGTTAATAAATAGATGAAGGGCATGATATGCCTTGAATAGAAGAAAGAGCAGCAGAACAGCAGGCCTGTAGGTTAGCATGGGATGGATGAACGAGTACAATGCAAACCGATGACGGGATGTTTTCTCCTACAGTATCCGAATTTTATGGTGAGCATGGAAAGAGCGCCATTGCAGCTGGTTAAAGAGCCCTCTACAT
CATCTCTTGTGgtatgcataaattccccacatatagttgtagtagtcgtaaaacagcactttgtctgctgttttagtacttttcctgcaatactttctgcaacaatcttctttagagtggatacacagatattcgagctctttgggtatttgaatttccctttggtttaagatttgtcaaatttcgaaggaggaatgaaa
ggctgtgccagcgtcactagcagtatcctcttgtctgcagTGTCTGAAAGCAAGCCCACATTGTAGGTTCCTTTCTTCTAGATATTAAGAACATTATGACATGCGAGGGGTTCCTTCATTTGAACAAGAACGGATCACCTTTAACGAGCAAGTACTGAGGTATTGGTGTTGTTTGTATTTCATTTGTTTCACTGTTATAA
ACTTATATTTAGGAAATGATTTTCTAAACTTTTAGGTAAGCTGATAGCTAAGGAAGACTTGTTGTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCAAGCGAAATAAGACGGTAAGTGAAATGGCCTGATATTTTGTTGTGAATTGAA
TTATTTGTTCATTTGCATTCTGGACTATGGATTTTGTTAGCAAACATTCTCATTTCTATGTTGCTATGTAGCAATGAAGTCTGCAGTGATCATGGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATGGGTGTGATGCCTCTTCCACGACCTCCAAT
TCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTCAGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCTTCTTGAGCTTTGTGGACCAATCAAAAGTT
GGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAATTCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTTTTGTTGAGAAGAAAAGTGAAAGGGAAAAA
CAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGAGTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAATGATGCTGATCGGGAGGCTGATGAGGAAGC
TTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCCTCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGATATTCATGATGAAAAAATCGAGGATGACACGG
CAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACAGAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTATGAGAGGGAGCGAGAAAGAGAGAGGCTACGTCGGGAA
AGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGGGAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGGAAGAAAGTGATGATGAGGATTGGAGAAAAAGGCGACA
TAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGACCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGATCAACATGAGTCTGCAAGCTTGCCTATAGATGAAATTA
TGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAGGATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGGTGCACCTACTCGAAAGCTAGGCTTTGGTCTTATTGGA
TCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTGCAGCACCAGACTTTGCAAAGCGTATATCAACTGCCGG
TTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAAGGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAGAGGGATAGGAGTCGCGAGAAATATCATGAAAGAGATG
ATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTCAAAGAAAATAACAGAATTTCTAGGAGAGGAGGAAACA
ACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATGCTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGAACTGACGGATTTCAGTTAGTTTTCT
GT
Intron 5 GTAGGGCCTT ... CTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 60 | 2 | 25 |
| A2 | 33.33 | 46 | 6 | 23 |
| A3 | 38.67 | 46 | 5 | 29 |
| A4 | 34.48 | 19 | 3 | 10 |
| A5 | 38.89 | 11 | 0 | 7 |
| A6 | 44.44 | 10 | 0 | 8 |
| A7 | 38 | 93 | 2 | 57 |
| A8 | 31.48 | 37 | 1 | 17 |
| A9 | 27.66 | 68 | 8 | 26 |
| A10 | 34.75 | 77 | 4 | 41 |
>TRINITY_DN107436_c0_g1_i1 from sample A3 / Example spliced isoformCTTCACTGCTGAACCATGACTGCATTGGGAAATTCTTTTTCTTTTTGGAAGTACGCTTATATATTTTTTATTTTATTTTAACGAATAGACTTATATGTAGACAGCTTATTAACAGATAGGTTGCCGCCAAGGAGAAAATAGTTGGAGTGATGAAAATTCCTTCCCCTAAGCCTAGATTTTCACACTTATGAGCCAGTCAC
GTGAGTCAAACTTGAGTCAGATTTGCAACTTTCCAAAGTCAGTTCTGGTAGCCTGTCTGTAAAAGGCACACAGAATACACTCGTTTGGCTTGTTTTTCTGATCCGATTTTGCCGCAGACACTCAGCAGACCTGCCAACTGTCCAAGATCTGTGGTTTTTTGTAGTATGTAGTGTCATCTTTGTACTTTTAAATGATATAA
TATAAAAAATTTGCACGATCTGGACATTCTAAACATTCGTATTAATGAAAGACAATTTATTTTTTTGAAATTTTCTGAATGTTTTTTTCCCGAGTTTATCGGACTCTTCAGCCTTGCTGAGTCATTCTCCAAGACTAGTGTAGTAACTTTGATTGCTAATAAGACTGTCATTAAACTAGTACTATATAGTCCAAAATATA
GCTCTAAGGGGTTGAGCTAGTACAATAAACTGCCAAATAACAAGCTTTTAAAATTTTTAAGGGAATGGACCAGAACTCCTGCCAGCTCAGGCACTGGGTGCTGCCATAGCTGCAAAAGGTGGCGGTTTGTCATTGCTTCCTTTTGTGGGCTATCCAATGTGCATCTAAAAAGTATGTGTTCCCATTGCAATTCCAATATT
TGTATCAAAATTGATACTCTAAAAAGCATCAGAAAACTAATGAAATAGAACATACTTTCGGGCATTTATTGGAAAACAAATTGCTGTTTGAACACTGTATTGGATGGGGGGAATCTGGAAGGTGTGTAGAATATCTATTCTGTGTTGGTGTTTCTGTTGTTGATCAATTGAAGAGTCTAGCTTGTAGGAGCATTGCAATT
AGGATGAGAATGGGAATGAGAAAATAATTCATCTTTACTTTAGGCAATCATAGTGATGGTTATGGATTCTAAATCATTGTTGTTACAGTGTAGTTTTGACAGAGCGAATAATTTGAAATTATTCTTTCATGGAACACACTCGATATATGATGGTAATTGTAACTCTTTTAAGCATTTACTGTACTAGATAAAGATACAGA
AAGATTGCCACCACACTCATCTAGTTATATTTATGCATTTGATATTGGAATGGTAAATATAACTTGTTCAATAATTACTAGATCAATGTATGGAATATAGAAATCAGTGTAGGATTTGTATTGGGCAAGTTCTGAACTTGATTTACTTAATCATCAGATTCTGTGGGTGTTTTAAATAATGTAAACTGTGCAAGATAATT
CAAAATTAATTTATTTTATTGAAGCAATATCGTAAAAAGAGTGGAAATAGGGTGAGTTAATAAATAGATGAAGGGCATGATATGCCTTGAATAGAAGAAAGAGCAGCAGAACAGCAGGCCTGTAGGTTAGCATGGGATGGATGAACGAGTACAATGCAAACCGATGACGGGATGTTTTCTCCTACAGTATCCGAATTTTA
TGGTGAGCATGGATAGAGCGCCATTGCAGCTGGTTAAAGAGCCCTCTACATCATCTCTTGTGGTATGCATAAATTCCCCACATATAGTTGTAGTAGTCGTAAAACAGCACTTTGTCTGCTGTTTTAGTACTTTTCCTGCAATACTTTCTGCAACAATCTTCTTTAGAGTGGATACACAGATATTCGAGCTCTTTGGGTAT
TTGAATTTCCCTTTGGTTTAAGATTTGTCAAATTTCGAAGGAGGAATGAAAGGCTGTGCCAGCGTCACTAGCAGTATCCTCTTGTCTGCAGTGTCTGAAAGCAAGCCCACATTGTAGGTTCCTTTCTTCTAGATATTAAGAACATTATGACATGCGAGGGGTTCCTTCATTTGAACAAGAACGGATCACCTTTAACGAGC
AAGTACTGAGGTATTGGTGTTGTTTGTATTTCATTTGTTTCACTGTTATAAACTTATATTTAGGAAATGATTTTCTAAACTTTTAGGTAAGCTGATAGCTAAGGAAGACTTGTTGTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCA
AGCGAAATAAGACGCAATGAAGTCTGCAGTGATCATGGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATGGGTGTGATGCCTCTTCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTC
AGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCTTCTTGAGCTTTGTGGACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAAT
TCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTTTTGTTGAGAAGAAAAGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGA
GTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAATGATGCTGATCGGGAGGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCC
TCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGATATTCATGATGAAAAAATCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACA
GAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGGTATGAGAGGGAGCGAGAAAGAGAGAGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGG
GAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGAGGAAGAAAGTGATGATGAGGATTGGAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGA
CCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTGATCAACATGAGTCTGCAAGCTTGCCTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAG
GATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATTGGTGCACCTACTCGAAAGCTAGGCTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACC
CATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGCTGCAGCACCAGACTTTGCAAAGCGTATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAA
GGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAGAGAGGGATAGGAGTCGCGAGAAATATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGT
TAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATCTCAAAGAAAATAACAGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATG
CTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGCTTCCAAGGCAAAGAACTGACGGATTTCAGTTAGTTTTCTGTCCGTAAGGAGAATATCAAAATTGATGGTCTTTATCCATCCCTTTCCCTTTGCAAG
GAGAGATGCTGAAATCTGCTCTTTTATTGGCCAGACATTTTCAATTGGTGGTCGTGAATTGCAGGTCAGTAAAAGGAGAATATCAAATGGCTGGTCCCATATTTTGTCTCAAGTTTCATTTATCAGCTTGATGATGTGGCATAGCTGTATCATGATCTTGTCGATCATGTTTATGTAATTGAAAATTGACTTCTACTTCG
TGATGGGCTTGTGGAGTATGCTGCTGTAGATTTTCTCTGCCTGTTTTTGGACTGATGATTGCCTGTTTGTTTGGGGTCATTTTGAAGATTATATGAAAGTAGAATTGGACAATTGTCCAAGGTTGTCTCTTAAAGAATATTATACGAATCTCTGGTCACAATTTCTAATCTTTGAAATACATGATACAACTTGCAAAATT
AACATCACTCACATTCTTTGTATGATAAAGTTGCAAATGTACACAAGAAAATGAGGGTCATTTTACATTTATAAGAATGACAGAGTGAAGGTGGATATGTAGTTGATCTCTGTTCTGGTTTCTTTATATCTGAAGAAGTGCATGTAGAACCCAATATGTAAAACAACACAACGGGAAACAACCAGAACAGAGATCAACTA
AATGCAATAGTAGCACGTTCATTGTGTTTGGAGAAGTTTGAATGTTCTTTTTGACTGCTCGTCTTTGAAAAGTAACTGTAACCAAGGGTTGCAGGTTGGAAACAAGTGTAACCTTTACAATGGATGTAATTTAGATATTTGCTTATTTATTTTTAGAGTGCAGATTTCCCTTGGGTCACAATTTGTATGTGTAGCCTTTG
CAATAAGTGTTATTTAGGTAATTTCTTATTCATTTGAGAGTGCAGATTATCTGTGGTTAATAATGTGTATACAAGTTTAGGGATAACACTAGGTTTTTAGTTTTCCTAACATTTAGAGTGGACATCATTCATCACCAGGGAGAATGACAGCTCATCAAGGATGACATGACGCAAATCGACTGGAAGGAAAATAAGTGGTA
GAGGTGAAATCGAAGTTAGGTAATAATGAAAATAAGTTTTGGTATTTTACTTTTTAAGAATAAAAAAGTTCTTATTACCTATATAGGTTTATGAAAGTTATACAATTTCCAGGTTTGACAATGCTTTCTGAATGAATTTCACTTATCAAAATGTGGAGAATGCTTGCTATTCAAAGAATTCTTGATAGAACAAATCACCT
AATAATAAGACTTGTCCATGTACTTATTATCCCAAGAAAAAATTTCAACTTAAAATCCCAGGAAGGAAAATGTTACATTAAAAAATTACTGGAGCACTATTT
>TRINITY_DN107436_c0_g1_i5 from sample A3 / Example unspliced isoform:CTTCACTGCTGAACCATGACTGCATTGGGAAATTCTTTTTCTTTTTGGAAGTACGCTTATATATTTTTTATTTTATTTTAACGAATAGACTTATATGTAGACAGCTTATTAACAGATAGGTTGCCGCCAAGGAGAAAATAGTTGGAGTGATGAAAATTCCTTCCCCTAAGCCTAGATTTTCACACTTATGAGCCAGTCAC
GTGAGTCAAACTTGAGTCAGATTTGCAACTTTCCAAAGTCAGTTCTGGTAGCCTGTCTGTAAAAGGCACACAGAATACACTCGTTTGGCTTGTTTTTCTGATCCGATTTTGCCGCAGACACTCAGCAGACCTGCCAACTGTCCAAGATCTGTGGTTTTTTGTAGTATGTAGTGTCATCTTTGTACTTTTAAATGATATAA
TATAAAAAATTTGCACGATCTGGACATTCTAAACATTCGTATTAATGAAAGACAATTTATTTTTTTGAAATTTTCTGAATGTTTTTTTCCCGAGTTTATCGGACTCTTCAGCCTTGCTGAGTCATTCTCCAAGACTAGTGTAGTAACTTTGATTGCTAATAAGACTGTCATTAAACTAGTACTATATAGTCCAAAATATA
GCTCTAAGGGGTTGAGCTAGTACAATAAACTGCCAAATAACAAGCTTTTAAAATTTTTAAGGGAATGGACCAGAACTCCTGCCAGCTCAGGCACTGGGTGCTGCCATAGCTGCAAAAGGTGGCGGTTTGTCATTGCTTCCTTTTGTGGGCTATCCAATGTGCATCTAAAAAGTATGTGTTCCCATTGCAATTCCAATATT
TGTATCAAAATTGATACTCTAAAAAGCATCAGAAAACTAATGAAATAGAACATACTTTCGGGCATTTATTGGAAAACAAATTGCTGTTTGAACACTGTATTGGATGGGGGGAATCTGGAAGGTGTGTAGAATATCTATTCTGTGTTGGTGTTTCTGTTGTTGATCAATTGAAGAGTCTAGCTTGTAGGAGCATTGCAATT
AGGATGAGAATGGGAATGAGAAAATAATTCATCTTTACTTTAGGCAATCATAGTGATGGTTATGGATTCTAAATCATTGTTGTTACAGTGTAGTTTTGACAGAGCGAATAATTTGAAATTATTCTTTCATGGAACACACTCGATATATGATGGTAATTGTAACTCTTTTAAGCATTTACTGTACTAGATAAAGATACAGA
AAGATTGCCACCACACTCATCTAGTTATATTTATGCATTTGATATTGGAATGGTAAATATAACTTGTTCAATAATTACTAGATCAATGTATGGAATATAGAAATCAGTGTAGGATTTGTATTGGGCAAGTTCTGAACTTGATTTACTTAATCATCAGATTCTGTGGGTGTTTTAAATAATGTAAACTGTGCAAGATAATT
CAAAATTAATTTATTTTATTGAAGCAATATCGTAAAAAGAGTGGAAATAGGGTGAGTTAATAAATAGATGAAGGGCATGATATGCCTTGAATAGAAGAAAGAGCAGCAGAACAGCAGGCCTGTAGGTTAGCATGGGATGGATGAACGAGTACAATGCAAACCGATGACGGGATGTTTTCTCCTACAGTATCCGAATTTTA
TGGTGAGCATGGATAGAGCGCCATTGCAGCTGGTTAAAGAGCCCTCTACATCATCTCTTGTGGTATGCATAAATTCCCCACATATAGTTGTAGTAGTCGTAAAACAGCACTTTGTCTGCTGTTTTAGTACTTTTCCTGCAATACTTTCTGCAACAATCTTCTTTAGAGTGGATACACAGATATTCGAGCTCTTTGGGTAT
TTGAATTTCCCTTTGGTTTAAGATTTGTCAAATTTCGAAGGAGGAATGAAAGGCTGTGCCAGCGTCACTAGCAGTATCCTCTTGTCTGCAGTGTCTGAAAGCAAGCCCACATTGTAGGTTCCTTTCTTCTAGATATTAAGAACATTATGACATGCGAGGGGTTCCTTCATTTGAACAAGAACGGATCACCTTTAACGAGC
AAGTACTGAGGTATTGGTGTTGTTTGTATTTCATTTGTTTCACTGTTATAAACTTATATTTAGGAAATGATTTTCTAAACTTTTAGGTAAGCTGATAGCTAAGGAAGACTTGTTGTTTATTTTTGTTCTGTGAGATCCTGCCTGTCTCTGGAGTTTTAAATATTCAGTTTAGAAATTGGTGTTCAGATGCTTTTAACTCA
AGCGAAATAAGACGCAATGAAGTCTGCAGTGATCATGGAGGTATGCCCCGATATTCAGCTCCCTACCCTCCTATGGTGCGTCCTACTTTTCCTCCACGTCCACTGGGAACTATGGGTGTGATGCCTCTTCCACGACCTCCAATTCCAGGAGTTCGTGGAGTGCCCCCAGTTTTGAAGTTTCCTCCTCCGGCTACAGCTTC
AGATCCTGCTTCAAAGGGTGCCATACCAATCATCCCTCCCACTGAGAAACCACAGACAACAGTTTATGTTGGAAAGATATCACCGACTGTGGATAATGAATTTTTACTCTCTCTTCTTGAGCTTTGTGGACCAATCAAAAGTTGGAAGCGTGCCCAAGATCCAACAAATGGTACCCCAAAAGGATTTGGGTTTTGCGAAT
TCGAGTCTGCAGAAGGAGTACTCCGTGCCCTACGCCTTTTGAACAAATTTAGTCTGGAGGGCCAAGAATTAGTGTTGAATGTCAATCAAGCAACGCGTGAATACTTGGAGCGTTTTGTTGAGAAGAAAAGTGAAAGGGAAAAACAAATCAAAGAAGCAGAACTTCAGGATGCTGACAAGGAAGAAGAAACTGCACCAGGA
GTTGAGAAGAAAGAAACCTCAAGGCCGCCAGTGATCGGTGCGCTAAAGAAGGATAGTAATGATTCTGTAGATCAAGGAAATCAAGATGGTGGAAAGAAATTTGGCATTGTAAATGATGCTGATCGGGAGGCTGATGAGGAAGCTTTGAGCAAACTTACAAGTATGCTAGAAGAGAGGGCAAAGCTGAAGCCTCTTCCCCC
TCCCCCACCTCTTCATGCTGGTTCAGATGCTCCAGGAAAATCCATTTCAACATCCGAGGCCCCTGCAAGGTCAAGGGATGCAGATTCTGACGTGGAGATTGTTAAGAGTGgtagggcctttggagttttgtatttcaaatattttttttgaatgactcaaataacaatttactttatttgaagtagctaataattgcttg
ttgcagATATTCATGATGAAAAAATCGAGGATGACACGGCAAGTGAAAACAAACCGACATCTGAACATGAAAGGCCTGAGACAAGCTCATCTGACAGAGGGAGACGCTATGCCAGAAGCAGAGAGAGAGATAGTGATAGAAGCAGAGAGAGAGACAGGGAAAGAGATCTTAAACGTGAGAAGGAGCGAGAGCTAGAAAGG
TATGAGAGGGAGCGAGAAAGAGAGAGGCTACGTCGGGAAAGGGAGCGTGAAATGAGAATCCGAGAAGTAGAGCGCCTTTATGAAGAACGTGAAAGGGAGTGGGAAGCCAGAGAGAGGGACAAAGAACGACAGCGGCAATATGAGAGAGAGAGGGAGAAGGAGAGAGAGAGAGAAAGGCGGCGGGAAATCAAAGAGCAAGA
GGAAGAAAGTGATGATGAGGATTGGAGAAAAAGGCGACATAGAAGTAGCATATATGACGAGAAGAGGAAAAGAAGGCAACGGGAGAAGGAAGATGACCTATCTGATCAGCTAAGAGAAGAACAAGAGATTGCAGAGGCAAAGAAACAAAAATTTGAAGATCATAGGCAGGAGGATGATTCAACAGCATTGGTACTGTCTG
ATCAACATGAGTCTGCAAGCTTGCCTATAGATGAAATTATGATTGATCTCAAAAGGAGTCCAATGGACGAGGGTTATGGGAGTGATTCTGGAGAAGGATTTCAAGAGGCTGAAGCATCATTGGGGAATGGGAATGCCAGTGTGTCAGGAGATGAGGCTGCAATGGAGCAGTTACCTGACACAGACTCCAGGCAAAACATT
GGTGCACCTACTCGAAAGCTAGGCTTTGGTCTTATTGGATCAGGAAAACGTGCTGCTGTTCCATCTGTTTTTCATCAGGAGGATGATGAAGATACCCATAAAGAGAAAAAGATGCGACCACTTGTGCCCATTGATTACTCAGCCGAGGAAATGCAGGCAGTCTCAGCAACTCCTCCTTCTGGAACATTGTCAAATCTTGC
TGCAGCACCAGACTTTGCAAAGCGTATATCAACTGCCGGTTCTAAAGAAAGATTTGATCCTGAAAAGGATAGAAGCAGAAAACAAAGTCCTGAAAAGGATAGAAGCAGAAAACAAAGTGATAGATCAGTCCAGAAAGAAAGAGAAAGTAATGATAATGATAGCAACCGCAGTAGAGAAGAGAGCAAAGCTAGAAGTCGAG
AGAGGGATAGGAGTCGCGAGAAATATCATGAAAGAGATGATGCTCTGGAGAAAGCAAAGGCTCTTGAAAACAAGAAGCTTTTGGATGCGAAGCAGTTAATAGATACCATTCCTAAGACGAAAGAGGCTCTATTTGCGTACAACATTGACTGGGCTATATATGACAAGCATGATTTGCATGAGAGAATGAGACCATGGATC
TCAAAGAAAATAACAGAATTTCTAGGAGAGGAGGAAACAACTTTGGTGGATTTTGTCGTCTCCAAAACCAAGAAGCACGTGCCTGCAGCCCATATGCTAGAACTTTTGGAGTCTATATTGGATGAAGAAGCAGAAATGTTCGTCTTAAAGATGTGGAGAATGCTGATTTTTGAAATAAAAAAGGTTGAGACAGGGCTTGC
TTCCAAGGCAAAGAACTGACGGATTTCAGTTAGTTTTCTGTCCGTAAGGAGAATATCAAAATTGATGGTCTTTATCCATCCCTTTCCCTTTGCAAGGAGAGATGCTGAAATCTGCTCTTTTATTGGCCAGACATTTTCAATTGGTGGTCGTGAATTGCAGGTCAGTAAAAGGAGAATATCAAATGGCTGGTCCCATATTT
TGTCTCAAGTTTCATTTATCAGCTTGATGATGTGGCATAGCTGTATCATGATCTTGTCGATCATGTTTATGTAATTGAAAATTGACTTCTACTTCGTGATGGGCTTGTGGAGTATGCTGCTGTAGATTTTCTCTGCCTGTTTTTGGACTGATGATTGCCTGTTTGTTTGGGGTCATTTTGAAGATTATATGAAAGTAGAA
TTGGACAATTGTCCAAGGTTGTCTCTTAAAGAATATTATACGAATCTCTGGTCACAATTTCTAATCTTTGAAATACATGATACAACTTGCAAAATTAACATCACTCACATTCTTTGTATGATAAAGTTGCAAATGTACACAAGAAAATGAGGGTCATTTTACATTTATAAGAATGACAGAGTGAAGGTGGATATGTAGTT
GATCTCTGTTCTGGTTTCTTTATATCTGAAGAAGTGCATGTAGAACCCAATATGTAAAACAACACAACGGGAAACAACCAGAACAGAGATCAACTAAATGCAATAGTAGCACGTTCATTGTGTTTGGAGAAGTTTGAATGTTCTTTTTGACTGCTCGTCTTTGAAAAGTAACTGTAACCAAGGGTTGCAGGTTGGAAACA
AGTGTAACCTTTACAATGGATGTAATTTAGATATTTGCTTATTTATTTTTAGAGTGCAGATTTCCCTTGGGTCACAATTTGTATGTGTAGCCTTTGCAATAAGTGTTATTTAGGTAATTTCTTATTCATTTGAGAGTGCAGATTATCTGTGGTTAATAATGTGTATACAAGTTTAGGGATAACACTAGGTTTTTAGTTTT
CCTAACATTTAGAGTGGACATCATTCATCACCAGGGAGAATGACAGCTCATCAAGGATGACATGACGCAAATCGACTGGAAGGAAAATAAGTGGTAGAGGTGAAATCGAAGTTAGGTAATAATGAAAATAAGTTTTGGTATTTTACTTTTTAAGAATAAAAAAGTTCTTATTACCTATATAGGTTTATGAAAGTTATACA
ATTTCCAGGTTTGACAATGCTTTCTGAATGAATTTCACTTATCAAAATGTGGAGAATGCTTGCTATTCAAAGAATTCTTGATAGAACAAATCACCTAATAATAAGACTTGTCCATGTACTTATTATCCCAAGAAAAAATTTCAACTTAAAATCCCAGGAAGGAAAATGTTACATTAAAAAATTACTGGAGCACTATTT