NA ----> NA
Intron 1 GTATTTTTTT ... CTCTGCGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80 | 3 | 23 | 1 |
| A2 | 61.9 | 8 | 23 | 3 |
| A3 | 65.08 | 11 | 28 | 13 |
| A4 | 58.82 | 7 | 11 | 9 |
| A5 | 55.56 | 10 | 16 | 9 |
| A6 | 65 | 14 | 33 | 19 |
| A7 | 60 | 16 | 27 | 21 |
| A8 | 51.52 | 8 | 8 | 9 |
| A9 | 61.64 | 14 | 28 | 17 |
| A10 | 60 | 16 | 22 | 26 |
>TRINITY_DN38577_c0_g1_i4 from sample A8 / Example spliced isoformATGAAGCTTCCGCACCTTGATGGAAAGCTAGGGTTTTAAAATCCAATCCTCTCCATCCTTCGGCTTCCTATTCGCATTCTGCAGTTAGTTCTTCGCATTCCGCAGTTAGTTCTCCACAAGATTTATTAGGATAGCTGTTCACTTTGATACTGGATCGAAGACATTCAGCAGATTAGAAAAAAACGAAATCACAAGGCAAA
ATGCTGTCATCTCCAGGAAATTCCCCCCGTCACATATTGCCCTCGCCCTCACCCTCACCCTCGCCTGCGCCTACGCCCTCAAGTCTTAACAAACGCTCTGATGATGGAAGGAGGGGTTTGCTCATGGGCCCTCCGGCTCCCAAGAAGAGGAAAAATCCGGAAACTGTACTAGACGAAGACACATACGTTGCAGCTCTTGA
GAAGATCATTGAAAGGGATTTTTTCCCCGATTTGCCCAAGCTCCACGACCGCCTGGATTGGCTCGAAGCCGTCCGCAGCGGCGATCCATTACAAATCCGTGATGCCCAATTGAAGATTATTGAGAGGAGGCGAGGGAGGGCAGGCCAGGATCGAGCCCTTGTCACACCAGCATCGTCTGTTGTGGATCCCTTTGGAACGC
CTGCATCTCTTGTTGCCTCTTCTCCCGCACCGTCGTCAGTGAGATCGATGAGGTCTCCCAGCCAACAGCCTCTAGGCCTGGACCCGGTTAGCGATTCGGACAACGAGTTGCCGGTCGATACTTCCATGTCTCTGGATGCGTTTTTGAAGCGCCATACTAGTGAGGATAATGAAAGTTTTTCAAAGATTATTGACAAAATG
AACAAGAAGACAAGGGAAAAGTACCGCTACTTGCATGATGCCGAATCACAACCAGAGGAGAGGTTTGCCGATGAGAATGATAGGATAACTGACGGTTTTGGTACCTCAGGGCAGCCTGAGAGCACTATGGTTAATTGGAAATATACAGCTAAGAATCTTCTTATGTATGATTCAGCGAATCGAGAGGAAGCACCGCTGAC
GAAGGTGGAAAGGGAAGACAGAGTCAAGGCATTGACAAAAGTGGTCGATACAAAGAATACGCGTTTCCATGGAAAGGTGCTTGATTCCAGGCCCAAAGAAGAAGACACTGTGGCGATACTCTACACTCCTGTTGCAGGTGGAACACCTGTATCTTGGCCTTTTGCGGAGCGGGATGCGGAGAGGGCAAAGAAAAGATATG
ATTTGGAGGATCTCCGTAAAACCCCCCAATTACTATTAGGGGATTCAAGTAAGGATGATCCAAATAAGGGCACAGCAGGTTACAGCTATGTGCGAACTCCATCGCCGGCTCCTGGAGTGGACGAGTCTCCATTCATTACATGGGGAGAAATAGAAGGAACTCCTCTGAGATTAGAGACAGAGGATACCCCTGTTGGTATT
GGGGGTAATGGCGATGGCCCTCATTTCAAGATTCCACTTCCTCCATCCAGAGATGTAAAGGCTTACAACCTTTCAAGGGACGCAGCTCGTAATTTGAGAGAGAAGTCCAGACTTTTCCAAAAGCCTCCTCGTACTCCTATTTCTTCACGTAGTGGTTCTGCAAGCCCTAGTTTCAGTTTACTTTCACCTGCCGCACAGAA
GTTTGTGAGGAATGCTATGGCGAAGTCTTCTAATTCTGTGGATGCGACTTTGAGAGCAAGCTATCGAGCAAGTCCAACTCCAGGGACTCCAAAAGTGCCCAGGAGTGCAGTCAGGCTTGACAGAGATGGGAGTTTGCTGTTGAAATCTTCCACACTAAGGGAATGCAGTGATTCTATCAGGTCAACCACTCCCGAAACAT
AAGGTTGAAAATATTTTGGGAGTTGTTGATTTCAACTATTAAGTTGTAAGCGTTCAATTTCCAGGCAGACTTTGGGAGTCATCTCAGCAAAAGATCAATTGACATTACTTGCTACATTTGTCCTTCCTAAGGTGGGAATGATCATATATAAGTTGTGCATGCAGCTCCATCTGTGTAATTTGTGTCTGTTCTCTTTATGC
TATACTTTTGACAGGCACTTTCTGTTCAGATGTAGTTGAGCATCATAACACTGTACAAACTTCTGATGTAATATTTTAATGTTGAAATAGAGATGAAAAACTTTTGAATGCTTTTGAATTACTTCTAAGTGCTTCAAGTTAGAAAATGGAAACTAAAGATTTTATCAGTAATAGTTGCTGATAAAAGGGAATTTTATGTT
TTAAACAAGTAATAGTTGCATATGCAATTACAGATTCGATTCTCTAGGGTTATTATAAGGCCTTCTGTTAAGCTGAATTGGGTCCAATCTTTATTACTTGTAAAACAATTTTAAAGTGCTTGGTGCCCTGCTCTGGAGGTAAGAATATTGGAGTACATGTGTTCATTTATGTTTGAGGACTAACTTAACTACACATGTAT
TCTATATATCTCTTTTTTAACATTAACAC
>TRINITY_DN38577_c0_g1_i1 from sample A8 / Example unspliced isoform:ATGAAGCTTCCGCACCTTGATGGAAAGCTAGGGTTTTAAAATCCAATCCTCTCCATCCTTCGGCTTCCTATTCGCATTCTGCAGTTAGTTCTTCGCATTCCGCAGTTAGTTCTCCACAAGATTTATTAGGATAGCTGTTCACTTTGATACTGGATCGAAGACATTCAGCAGATTAGAAAAAAACGAAATCACAAGgtatt
tttttggcacacttctgttgtttttttatcaaaaaaattcctgatttggattgaagattttccgcaagagaaactgaaaatacacgggttattttcttccgaattttatctgtaaaattctcggttggattgaatcctctgcgaagGCAAAATGCTGTCATCTCCAGGAAATTCCCCCCGTCACATATTGCCCTCGCCCT
CACCCTCACCCTCGCCTGCGCCTACGCCCTCAAGTCTTAACAAACGCTCTGATGATGGAAGGAGGGGTTTGCTCATGGGCCCTCCGGCTCCCAAGAAGAGGAAAAATCCGGAAACTGTACTAGACGAAGACACATACGTTGCAGCTCTTGAGAAGATCATTGAAAGGGATTTTTTCCCCGATTTGCCCAAGCTCCACGAC
CGCCTGGATTGGCTCGAAGCCGTCCGCAGCGGCGATCCATTACAAATCCGTGATGCCCAATTGAAGATTATTGAGAGGAGGCGAGGGAGGGCAGGCCAGGATCGAGCCCTTGTCACACCAGCATCGTCTGTTGTGGATCCCTTTGGAACGCCTGCATCTCTTGTTGCCTCTTCTCCCGCACCGTCGTCAGTGAGATCGAT
GAGGTCTCCCAGCCAACAGCCTCTAGGCCTGGACCCGGTTAGCGATTCGGACAACGAGTTGCCGGTCGATACTTCCATGTCTCTGGATGCGTTTTTGAAGCGCCATACTAGTGAGGATAATGAAAGTTTTTCAAAGATTATTGACAAAATGAACAAGAAGACAAGGGAAAAGTACCGCTACTTGCATGATGCCGAATCAC
AACCAGAGGAGAGGTTTGCCGATGAGAATGATAGGATAACTGACGGTTTTGGTACCTCAGGGCAGCCTGAGAGCACTATGGTTAATTGGAAATATACAGCTAAGAATCTTCTTATGTATGATTCAGCGAATCGAGAGGAAGCACCGCTGACGAAGGTGGAAAGGGAAGACAGAGTCAAGGCATTGACAAAAGTGGTCGAT
ACAAAGAATACGCGTTTCCATGGAAAGGTGCTTGATTCCAGGCCCAAAGAAGAAGACACTGTGGCGATACTCTACACTCCTGTTGCAGGTGGAACACCTGTATCTTGGCCTTTTGCGGAGCGGGATGCGGAGAGGGCAAAGAAAAGATATGATTTGGAGGATCTCCGTAAAACCCCCCAATTACTATTAGGGGATTCAAG
TAAGGATGATCCAAATAAGGGCACAGCAGGTTACAGCTATGTGCGAACTCCATCGCCGGCTCCTGGAGTGGACGAGTCTCCATTCATTACATGGGGAGAAATAGAAGGAACTCCTCTGAGATTAGAGACAGAGGATACCCCTGTTGGTATTGGGGGTAATGGCGATGGCCCTCATTTCAAGATTCCACTTCCTCCATCCA
GAGATGTAAAGGCTTACAACCTTTCAAGGGACGCAGCTCGTAATTTGAGAGAGAAGTCCAGACTTTTCCAAAAGCCTCCTCGTACTCCTATTTCTTCACGTAGTGGTTCTGCAAGCCCTAGTTTCAGTTTACTTTCACCTGCCGCACAGAAGTTTGTGAGGAATGCTATGGCGAAGTCTTCTAATTCTGTGGATGCGACT
TTGAGAGCAAGCTATCGAGCAAGTCCAACTCCAGGGACTCCAAAAGTGCCCAGGAGTGCAGTCAGGCTTGACAGAGATGGGAGTTTGCTGTTGAAATCTTCCACACTAAGGGAATGCAGTGATTCTATCAGGTCAACCACTCCCGAAACATAAGGTTGAAAATATTTTGGGAGTTGTTGATTTCAACTATTAAGTTGTAA
GCGTTCAATTTCCAGGCAGACTTTGGGAGTCATCTCAGCAAAAGATCAATTGACATTACTTGCTACATTTGTCCTTCCTAAGAGGTGTAGATGATTCAGAGAGTTCAGAATATGCTGTTCAAACCTTTGCTTTCTCTGAGCTGCCAACTCATCTCTTTCCCTCGTATATGATTCAAATTGGCATAGAGAACTTGAATTCT
CTCGTTTGAAACATGGGTTTGACTTCATGAGCAATTTTCAGTGATTGTAGTATGGGCCTGCCGTGACATGAAATTTCTGAACCAATCCCAAGTGTTGAAGGGGTTCCTTGGCTGTTCACTTATACCTGGTGAATTCTACTGTGGCACAAGGCTGAGTTCTGAGATGACCTCTCTCTCTGTTAGCTGAGGAATCCTCCATG
GTGGATAGCATCAGAGCAGGCTGGTGAAGAGGTGAGACTAGCAAGGCATTTAAACCACCTGATATGCACCATGCATTGCCATTCACAACACATTAAAACAAACATTACAAATTAAAGTGAACTAACATGTGCATGGAGGGCTGAAATAAGATTGCTGACATCATAAGGTTGAGCTCTTTGAAGCCCTAGGTATTTTGTCA
TGTGCGCAAGCTATTAGAGTATGAGTGCTAAGGTGCACACTGCATTCAATGGAAGGATTGGATCCACCTGACCTAAATCATATACTCAACGGTTATGACTGGAACATTTATTTGCCTGGACTACTGGATCCTCATTCTAACAGGCTTCAGTGTCTATCACGTGGAGGTTCTAATTATAGAAGGTATTGGTGGCTAAAAGC
TCGATTCCTTTTGTTGGAGGCCAAAGCCTTGCTTGCCGGAGAATGAATGAACACCAAGGAAAATTGTGAGATTGGAGCATGGAAGCATGGAGGGGTGGGTATTGTCAACTGATAAAAAGGTGGCTGTATCTGCAGGGAATTCTTCCTCTGCAAGAATTTCCTTCGAGTTTCTAGCCTGGATTTTGTGTTCAAAAGGTCAT
TCATGGAGTTCATCCTGTTAATAGCACTCTACACTTTCACTTTGTAAATTTGAGGCACTCTATTCTGTACTTACCAAATTCTGTCCTAGAGCTCAGGAATGTTAGAGTTTCTGTATTCAGCTGTTGATACTCTGTTACAGTTTTTGTATTTAGCCTTTATGAGCTATTGGCAAGTCCAGAAAACGAGGTTTCCATCCTAT
TTTATTTTTGAGTTCTATGCAGCTCAAAATTCCTTGAATGTATTTGGCCGTAGGTTTCATGAACTTTTCTCGGCTTTAGAGAAAATCTTTATGTTTTACCCTTCATCATTGTAGAGTCTTATGTAGTATGGACGAGTCAAATCTGCGAGCTCTTGCTTTTGTGTACTCTGTTAATGGTTCTGTTCATTATGGTTAAAAGA
TTCCTCCTCATGAAAAAGTGCTTAGAGTCACTTGATAGCCATGTATTACGCAGGGCATTTAATTTAGTGACAGACTACAAC
Intron 2 GTATTTTTTT ... CCTTCCTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.21 | 3 | 23 | 9 |
| A2 | 78.72 | 5 | 23 | 14 |
| A3 | 69.7 | 10 | 28 | 18 |
| A4 | 51.72 | 7 | 11 | 4 |
| A5 | 51.35 | 9 | 16 | 3 |
| A6 | 80 | 12 | 33 | 63 |
| A7 | 63.83 | 17 | 27 | 33 |
| A8 | 90.63 | 3 | 8 | 50 |
| A9 | 75 | 12 | 28 | 44 |
| A10 | 63.41 | 15 | 22 | 30 |
>TRINITY_DN48672_c3_g2_i3 from sample A7 / Example spliced isoformCCCGTGATAAAGTTGCAATACATGGCCGTCGTTCTTTTTAAAGCAGCAAATGAAGCTTCCGCACCTTGATGGAAAGCTAGGGTTTTAAAATCCAATCCTCTCCATCCTTCGGCTTCCTATTCGCATTCTGCAGTTAGTTCTTCGCATTCCGCAGTTAGTTCTCCACAAGATTTATTAGGATAGCTGTTCACTTTGATACT
GGATCGAAGACATTCAGCAGATTAGAAAAAAACGAAATCACAAGAGGTGTAGATGATTCAGAGAGTTCAGAATATGCTGTTCAAACCTTTGCTTTCTCTGAGCTGCCAACTCATCTCTTTCCCTCGTATATGATTCAAATTGGCATAGAGAACTTGAATTCTCTCGTTTGAAACATGGGTTTGACTTCATGAGCAATTTT
CAGTGATTGTAGTATGGGCCTGCCGTGACATGAAATTTCTGAACCAATCCCAAGTGTTGAAGGGGTTCCTTGGCTGTTCACTTATACCTGGTGAATTCTACTGTGGCACAAGGCTGAGTTCTGAGATGACCTCTCTCTCTGTTAGCTGAGGAATCCTCCATGGTGGATAGCATCAGAGCAGGCTGGTGAAGAGGTGAGAC
TAGCAAGGCATTTAAACCACCTGATATGCACCATGCATTGCCATTCACAACACATTAAAACAAACATTACAAATTAAAGTGAACTAACATGTGCATGGAGGGCTGAAATAAGATTGCTGACATCATAAGGTTGAGCTCTTTGAAGCCCTAGGTATTTTGTCATGTGCGCAAGCTATTAGAGTATGAGTGCTAAGGTGCAC
ACTGCATTCAATGGAAGGATTGGATCCACCTGACCTAAATCATATACTCAACGGTTATGACTGGAACATTTATTTGCCTGGACTACTGGATCCTCATTCTAACAGGCTTCAGTGTCTATCACGTGGAGGTTCTAATTATAGAAGGTATTGGTGGCTAAAAGCTCGATTCCTTTTGTTGGAGGCCAAAGCCTTGCTTGCCG
GAGAATGAATGAACACCAAGGAAAATTGTGAGATTGGAGCATGGAAGCATGGAGGGGTGGGTATTGTCAACTGATAAAAAGGTGGCTGTATCTGCAGGGAATTCTTCCTCTGCAAGAATTTCCTTCGAGTTTCTAGCCTGGATTTTGTGTTCAAAAGGTCATTCATGGAGTTCATCCTGTTAATAGCACTCTACACTTTC
ACTTTGTAAATTTGAGGCACTCTATTCTGTACTTACCAAATTCTGTCCTAGAGCTCAGGAATGTTAGAGTTTCTGTATTCAGCTGTTGATACTCTGTTACAGTTTTTGTATTTAGCCTTTATGAGCTATTGGCAAGTCCAGAAAACGAGGTTTCCATCCTATTTTATTTTTGAGTTCTATGCAGCTCAAAATTCCTTGAA
TGTATTTGGCCGTAGGTTTCATGAACTTTTCTCGGCTTTAGAGAAAATCTTTATGTTTTACCCTTCATCATTGTAGAGTCTTATGTAGTATGGACGAGTCAAATCTGCGAGCTCTTGCTTTTGTGTACTCTGTTAATGGTTCTGTTCATTATGGTTAAAAGATTCCTCCTCATGAAAAAGTGCTTAGAGTCACTTGATAG
CCATGTATTACGCAG
>TRINITY_DN48672_c3_g2_i2 from sample A7 / Example unspliced isoform:CCCGTGATAAAGTTGCAATACATGGCCGTCGTTCTTTTTAAAGCAGCAAATGAAGCTTCCGCACCTTGATGGAAAGCTAGGGTTTTAAAATCCAATCCTCTCCATCCTTCGGCTTCCTATTCGCATTCTGCAGTTAGTTCTTCGCATTCCGCAGTTAGTTCTCCACAAGATTTATTAGGATAGCTGTTCACTTTGATACT
GGATCGAAGACATTCAGCAGATTAGAAAAAAACGAAATCACAAGgtatttttttggcacacttctgttgtttttttatcaaaaaaattcctgatttggattgaagattttccgcaagagaaactgaaaatacacgggttattttcttccgaattttatctgtaaaattctcggttggattgaatcctctgcgaaggcaaa
atgctgtcatctccaggaaattccccccgtcacatattgccctcgccctcaccctcaccctcgcctgcgcctacgccctcaagtcttaacaaacgctctgatgatggaaggaggggtttgctcatgggccctccggctcccaagaagaggaaaaatccggaaactgtactagacgaagacacatacgttgcagctcttga
gaagatcattgaaagggattttttccccgatttgcccaagctccacgaccgcctggattggctcgaagccgtccgcagcggcgatccattacaaatccgtgacgcccaattgaagattattgagaggaggcgagggagggcaggccaggatcgagcccttgtcacaccagcatcgtctgttgtggatccctttggaacgc
ctgcatctcttgttgccccttctcccgcaccgtcgtcagtgagatcgatgaggtctcccagccaacagcctctaggcctggacccggttagcgattcggacaacgagttgccggtcgatacttccatgtctctggatgcgtttttgaagcgccatactagtgaggataatgagagtttttcaaagattattgacaaaatg
aacaagaagacaagggaaaagtaccgctacttgcatgatgccgaatcacaaccagaggagaggtttgccgatgagaatgataggataactgacggttttggtacctcagggcagcctgagagcactatggttaattggaaatatacagctaagaatcttcttatgtatgattcagcgaatcgagaggaagcaccgctgac
gaaggtggaaagggaagacagagtcaaggcattgacaaaagtggtcgatacaaagaatacgcgtttccatggaaaggtgcttgattccaggcccaaagaagaagacactgtggcgatactctacactcctgttgcaggtggaacacctgtatcttggccttttgcggagcgggatgcggagagggcaaagaaaagatatg
atttggaggatctccgtaaaaccccccaattactattaggggattcaagtaaggatgatccaaataagggcacagcaggttacagctatgtgcgaactccatcgccggctcctggagtggacgagtctccattcattacatggggagaaatagaaggaactcctctgagattagagacagaggatacccctgttggtatt
gggggtaatggcgatggccctcatttcaagattccacttcctccatccagagatgtaaaggcttacaacctttcaagggacgcagctcgtaatttgagagagaagtccagacttttccaaaagcctcctcgtactcctatttcttcacgtagtggttctgcaagccctagtttcagtttactttcacctgccgcacagaa
gtttgtgaggaatgctatggcgaagtcttctaattctgtggatgcgactttgagagcaagctatcgagcaagtccaactccagggactccaaaagtgcccaggagtgcagtcaggcttgacagagatgggagtttgctgttgaaatcttccacactaagggaatgcagtgattctatcaggtcaaccactcccgaaacat
aaggttgaaaatattttgggagttgttgatttcaactattaagttgtaagcgttcaatttccaggcagactttgggagtcatctcagcaaaagatcaattgacattacttgctacatttgtccttcctaagAGGTGTAGATGATTCAGAGAGTTCAGAATATGCTGTTCAAACCTTTGCTTTCTCTGAGCTGCCAACTCA
TCTCTTTCCCTCGTATATGATTCAAATTGGCATAGAGAACTTGAATTCTCTCGTTTGAAACATGGGTTTGACTTCATGAGCAATTTTCAGTGATTGTAGTATGGGCCTGCCGTGACATGAAATTTCTGAACCAATCCCAAGTGTTGAAGGGGTTCCTTGGCTGTTCACTTATACCTGGTGAATTCTACTGTGGCACAAGG
CTGAGTTCTGAGATGACCTCTCTCTCTGTTAGCTGAGGAATCCTCCATGGTGGATAGCATCAGAGCAGGCTGGTGAAGAGGTGAGACTAGCAAGGCATTTAAACCACCTGATATGCACCATGCATTGCCATTCACAACACATTAAAACAAACATTACAAATTAAAGTGAACTAACATGTGCATGGAGGGCTGAAATAAGA
TTGCTGACATCATAAGGTTGAGCTCTTTGAAGCCCTAGGTATTTTGTCATGTGCGCAAGCTATTAGAGTATGAGTGCTAAGGTGCACACTGCATTCAATGGAAGGATTGGATCCACCTGACCTAAATCATATACTCAACGGTTATGACTGGAACATTTATTTGCCTGGACTACTGGATCCTCATTCTAACAGGCTTCAGT
GTCTATCACGTGGAGGTTCTAATTATAGAAGGTATTGGTGGCTAAAAGCTCGATTCCTTTTGTTGGAGGCCAAAGCCTTGCTTGCCGGAGAATGAATGAACACCAAGGAAAATTGTGAGATTGGAGCATGGAAGCATGGAGGGGTGGGTATTGTCAACTGATAAAAAGGTGGCTGTATCTGCAGGGAATTCTTCCTCTGC
AAGAATTTCCTTCGAGTTTCTAGCCTGGATTTTGTGTTCAAAAGGTCATTCATGGAGTTCATCCTGTTAATAGCACTCTACACTTTCACTTTGTAAATTTGAGGCACTCTATTCTGTACTTACCAAATTCTGTCCTAGAGCTCAGGAATGTTAGAGTTTCTGTATTCAGCTGTTGATACTCTGTTACAGTTTTTGTATTT
AGCCTTTATGAGCTATTGGCAAGTCCAGAAAACGAGGTTTCCATCCTATTTTATTTTTGAGTTCTATGCAGCTCAAAATTCCTTGAATGTATTTGGCCGTAGGTTTCATGAACTTTTCTCGGCTTTAGAGAAAATCTTTATGTTTTACCCTTCATCATTGTAGAGTCTTATGTAGTATGGACGAGTCAAATCTGCGAGCT
CTTGCTTTTGTGTACTCTGTTAATGGTTCTGTTCATTATGGTTAAAAGATTCCTCCTCATGAAAAAGTGCTTAGAGTCACTTGATAGCCATGTATTACGCAG