sp|Q69QB8|CCD31_ORYSJ ----> Cyclin-D3-1
Intron 1 GTAAGCAATT ... TTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.13 | 13 | 1 | 4 |
| A2 | 27.27 | 8 | 4 | 2 |
| A3 | 14.29 | 6 | 1 | 1 |
| A4 | 0 | 4 | 0 | 0 |
| A5 | 20 | 2 | 1 | 0 |
| A6 | 19.51 | 33 | 4 | 12 |
| A7 | 21.43 | 22 | 3 | 9 |
| A8 | 19.44 | 29 | 5 | 9 |
| A9 | 21.9 | 41 | 5 | 18 |
| A10 | 26.42 | 39 | 5 | 23 |
>TRINITY_DN45981_c1_g2_i4 from sample A7 / Example spliced isoformACAGGAATGTGAGCTCCTCCACAATTAACCTGGGGGCGCGAATTTTTAGTTGGCCATTATTTTTTTTAAGAGGAGGACCACCACCCCATCGGACTGTACGCTGTTCTGCCCTGCATACTTGCCGAGGGATTGTGACTGCTTTTGTAACGGAGGAGGAGGACGCCGTTGAATTCATTTCATCTCTATCTGCCTGTCCTTTG
GGCTTTTGGGATTTAGAGATGTAAAGGAAAATGATGGAAGGAGTAGAAGAATACTAGGAAGAAGATGAGCAAGATCTGGATTTGATAGCAGCCAGCCATGGCGCCTAGCTTCGATTATGTGTCCAATGCTCACATCGAATCCTGTGACGACCAGGAGAATATCAGGAAAAATGCCCATATCTTGGCCCTGTCTGGTGAGA
ACGATGATGAATCAATGTTCATACTGGTCCAAAGAGAGACCCATTACATGCCTCCAGAGGTCTACTTGCAGAGGCTCCGGAATCGAACTCTCGACGTCAATGCTCGTCGAGAGGCCGTCGGCTGGATTCTGAAGCAAGGTGTGAAGGCTTGGATGATGCAGCTCATGGCCGTGGCCTGCCTGTCTCTTGCGGCTAAGATG
GAGGAGACCCGGGTTCCATTCCCCACGGACTTGCAGAGGGAGGATGCCAGATTCATCTTCGATGCTCGCACTATTCAAAGAATGGAGCTTCTGATCTTGAGTACATTGCAATGGGGAATGCGTTCCATTACGCCGTTTTCATTCATCGATTACTTTGCTTACAGGGCTGTTCATGGCCTTGGCCATGACTCCCCTCCAAA
AGTTTTGATGTCCAGAGCCATGGAACTCATTCTCAGTACCACAAAGGAAGTAGATTTCTTGGAGTACAGGCCATCAGCAATAGCTGCAGCAGCCCTGTTATGTGCAGCTGAAGAAGTGGTGCCTCTTCAAGCAGTCCACTACAAAAGGGCTTTATCCTCCTCCATTACTGATGTTGATAAAGACAAAATGTTTGGATGTT
ACAATCTGATTCAAGATATCATCATAGAAGAAGTTTGTTACTGGAATCCAATGTCCCTCATATGCACTGATAAAACTCCAGTGGGAGTGCTGGATGCAGCAGCCTGTTTAAGCGCTACACCCACTTCAAGCTACAGCGTGAAGCCATATGCATCCGTTGCAGCAGCCAAGAGGAGGAAATTGAATGAAATCTGCAGTGCA
TTGTTGGTATCTCAAGCCCATCCCTGCTGATAGATTAAGAAACCCCAACCTTGGTTGTTGAGAATGGGGAGTGGGGTTTGGTAAGGGTTTAGAGGAGCAGAAGATGCAGAACACTTTATAGATATATATAATTGACTGTTATTGGGGTATAAAGTTCTTGGCCTGCTAATTACTGCCCCCTTCCTCGCCCATTCGCCCAT
TTGATCAACTGGTTTATCCCAGATTGAATTTTGTCTTGTACAATCAAGGTTGAATAATGGATGATGATGACAGAATACCTATAATATCGCTGAAGAATCTCATACAATGGAAAAGCCATCCTTCAGATATATCTTTTCATAAACCTTTAATCTTCTTCTGTGTCCTGTATCCATCCAATCGAACAACCCCACCTTTCGAT
ATATCTCCTTATAAATCTATTTTGTGTGTACATCCATCTAAATTCTCTTATAAAGTAGAAGATATTTACTCCTAGATTGTTGTTGAAATTTTCATGAATTATCTTGAGCATCATACTTTTT
>TRINITY_DN45981_c1_g2_i2 from sample A7 / Example unspliced isoform:CAGTTAATGCCAGAAGGGCAGTGTCTGTTGCTCACATTGTCATGGGGTTATTTTAGCAATGAAACCCAATGGCCATTTGATTTGAAAATGTTTAAATGCTGAGATTCATGGCTGCAGAAGTAGATTTCTTGGAGTACAGGCCATCAGCAATAGCTGCAGCAGCCCTGTTATGTGCAGCTGAAGAAGTGGTGCCTCTTCAA
GCAGTCCACTACAAAAGGGCTTTATCCTCCTCCATTACTGATGTTGATAAAgtaagcaattagtagagtggaggatttagcagctgggtattgttaaattacaagcttcaagtgaacatttcattgatcaccaggaagaatagcaataagaaagagaacaatgctgatgagtttgtgttcaacaatttttttttgaattt
ttgtacactgatattcattggtttaatgatttcattgatgattgtttgcagGACAAAATGTTTGGATGTTACAATCTGATTCAAGATATCATCATAGAAGAAGTTTGTTACTGGAATCCAATGTCCCTCATATGCACTGATAAAACTCCAGTGGGAGTGCTGGATGCAGCAGCCTGTTTAAGCGCTACACCCACTTCAAG
CTACAGCGTGAAGCCATATGCATCCGTTGCAGCAGCCAAGAGGAGGAAATTGAATGAAATCTGCAGTGCATTGTTGGTATCTCAAGCCCATCCCTGCTGATAGATTAAGAAACCCCAACCTTGGTTGTTGAGAATGGGGAGTGGGGTTTGGTAAGGGTTTAGAGGAGCAGAAGATGCAGAACACTTTATAGATATATATA
ATTGACTGTTATTGGGGTATAAAGTTCTTGGCCTGCTAATTACTGCCCCCTTCCTCGCCCATTCGCCCATTTGATCAACTGGTTTATCCCAGATTGAATTTTGTCTTGTACAATCAAGGTTGAATAATGGATGATGATGACAGAATACCTATAATATCGCTGAAGAATCTCATACAATGGAAAAGCCATCCTTCAGATAT
ATCTTTTCATAAACCTTTAATCTTCTTCTGTGTCCTGTATCCATCCAATCGAACAACCCCACCTTTCGATATATCTCCTTATAAATCTATTTTGTGTGTACATCCATCTAAATTCTCTTATAAAGTAGAAGATATTTACTCCTAGATTGTTGTTGAAATTTTCATGAATTATCTTGAGCATCATACTTTTT