sp|Q9XIN8|FB119_ARATH ----> F-box protein At2g27310

Intron 1 GTCCATAGTG ... GTCCTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	3	4	8
A2	100	0	2	1
A3	100	0	11	0
A4	100	0	1	2
A5	100	0	3	0
A6	78.57	3	10	12
A7	91.67	1	16	6
A8	100	0	6	4
A9	100	0	15	9
A10	67.86	9	25	13

>TRINITY_DN39015_c0_g2_i1 from sample A10 / Example spliced isoform

CCGAGTTCTGTGATAAAGAGTATTGATTTGTTAAGTAGTTTTGACAAAGGCGAGAACGAAGAGGGCCAGGACAATATCTCCTTGGTAGATGGGTTGTCACCAATCACATCTCTTGAGAAGGAAAGGAAAGATGGCGAAGTTTGGAGAGATCTTTGGAACAACATAAGGCTTAGTTGGATCCTCGTGAATACAACGGACAA
GCAAGCAGTCAACCTTTCAAGCTGGAGTCCCCTAGGAGGACAAAAACATTGGCCTACTGACAAAGATTTCCTTATACTCTTTGGTGCCACACTTCCTGCTCATAAAATTCTGCCTGCTGGGGTTTGTCAGGGTATCCTTATGATGAAGTACAGAATTTCAGATGATAGTGTGGGAGATGGTTCTCATATGACTCTGAAGC
TGACTGAGCTTGGCATGCGGTTGGAAGACATGGGAGGTGCCCATGTCAATGGAAGGAACAGTCTACTCATCCTTAAAAGAGCTCTGAGCTGCCACAGAACTATGAACTACAACAACGTCGTAGCATCTTATCATCAATTTTTGAAAGCACGGAGTGAGTTGAAAGATGAGAAAATGAAGAGTGAAAGCTTTATTGATACA
CTTTGTGCTCTTGGTGGAATTACTGCATTTGCCATTGGTTGTTTTCTTGTTCTTTGAGAAATAAGTTGTTGATGCTATAGTGTTCTATGACATGTTTCAAATCCAGAGAGAACTGCAGACTCTCTGTGTCCTAACAATTCATCAATATGGTGCAACATCTCAGTCAGAATTACTGAATTTGAAAGAGCTTTGTACAGCTT
GGTAAATGGCTTATGTTCATTCGAAAATTTGTTGCTCTTTTTTTCGTGTGTCTTGTTGTTTCAACTTGTGCTCTCCTTGACTAGCTGCCTCACTGAGGTTGCTGAACCAGCA

>TRINITY_DN39015_c0_g2_i2 from sample A10 / Example unspliced isoform:

GAACTGCACGCTTATCACCTACTTCTTGGAAAAACTGTATAAAAGGCCCACATGAATGCCAACAGAGCTCATATCTTTACGGTTGAAAAATGGTATAGAAGGCCCACCTGAATGCTCACATATTCATAGATTAAAAAGCTGTCCAAAACGCCTAGTTTGGTGTTCACACAGGGTAATTATTTTGAGAATGCTGTGTCTAA
TGAGAATGGACAGAGCTCCCATATGGGTATTACAGCGAAATACAAGTAGATGCATGAAGCAAAGGAATCATCTTCAGTTGAATGCTAGGCTTGGATGTGTTCTTTAGGTTGGGCTTTTGATTGAATTCTCAAGAACTAGGGGGATCATGTCTTTGAATGCTGATCTAATCCGTGAAATATCAAAGCGGGTGGATGGCGCA
ACACTTGCCAGTGCAGAATGTGCATCCTCTCTCTTCCGTTCTGCAACAAGAGAAGAGCACACTTGGGAGGAACTATGCTTCTCATTGTGGCCTTCCACTAGAAATAAAGAGGTAAGAAGTTTGATTTCTGCATTGGGTGGGTTTCGGAAGTTCTACACAGATTGCTTTCCAATGGTTCTGCATGCAGAGAGAGTTTCTGC
TATTCACTGCAATTTGGAATTCGGCAAATCAGAAGAATTGCGGTCCGAGTTCTGTGATAAAGAGgtccatagtgtttctccctctgattttgtttccctcgtggatgtgcaatatagagataaagcaatttattccaaaatactttggggaatcccaggtgcagctgattgtaatggctggttctctaactgtcctttca
gTATTGATTTGTTAAGTAGTTTTGACAAAGGCGAGAACGAAGAGGGCCAGGACAATATCTCCTTGGTAGATGGGTTGTCACCAATCACATCTCTTGAGAAGGAAAGGAAAGATGGCGAAGTTTGGAGAGATCTTTGGAACAACATAAGGCTTAGTTGGATCCTCGTGAATACAACGGACAAGCAAGCAGTCAACCTTTCA
AGCTGGAGTCCCCTAGGAGGACAAAAACATTGGCCTACTGACAAAGATTTCCTTATACTCTTTGGTGCCACACTTCCTGCTCATAAAATTCTGCCTGCTGGGGTTTGTCAGGGTATCCTTATGATGAAGTACAGAATTTCAGATGATAGTGTGGGAGATGGTTCTCATATGACTCTGAAGCTGACTGAGCTTGGCATGCG
GTTGGAAGACATGGGAGGTGCCCATGTCAATGGAAGGAACAGTCTACTCATCCTTAAAAGAGCTCTGAGCTGCCACAGAACTATGAACTACAACAACGTCGTAGCATCTTATCATCAATTTTTGAAAGCACGGAGTGAGTTGAAAGATGAGAAAATGAAGAGTGAAAGCTTTATTGATACACTTTGTGCTCTTGGTGGAA
TTACTGCATTTGCCATTGGTTGTTTTCTTGTTCTTTGAGAAATAAGTTGTTGATGCTATAGTGTTCTATGACATGTTTCAAATCCAGAGAGAACTGCAGACTCTCTGTGTCCTAACAATTCATCAATATGGTGCAACATCTCAGTCAGAATTACTGAATTTGAAAGAGCTTTGTACAGCTTGGTAAATGGCTTATGTTCA
TTCGAAAATTTGTTGCTCTTTTTTTCGTGTGTCTTGTTGTTTCAACTTGTGCTCTCCTTGACTAGCTGCCTCACTGAGGTTGCTGAACCAGCA

Intron 2 GTAAGAAGTT ... CCATGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	3
A2	100	0	2	4
A3	75	3	7	11
A4	45.45	3	3	2
A5	84.62	1	5	6
A6	80.95	2	8	9
A7	76.92	3	12	8
A8	100	0	4	3
A9	69.23	4	8	10
A10	56.25	7	8	10

>TRINITY_DN40981_c4_g1_i6 from sample A9 / Example spliced isoform

TTCAGATATTCGAACTTAGAAAACTGTGCAAGAGGCCCAGTTGAGTGTTCACACAGCGGGACTTTTTTTTGACAGTGCAGAGACTATTCTGATCCAAGAGCAAGAAGTCATGGAGTTCCATTAAATCACTGCAGCCAATACAATTACATGCATGCATGCATCACAGGAATTTGGGGGATCATGTCTTTAAATGCTGACCT
AATTTGTGAGATCTTAAAGCGGGTGGATGGCGCTACACTTGCAAATGCAGGATGTGCATCGTCTCTCTTACGTTCTGCTGCAAGAGAAGAACATATTTGGGAGGAATTATGCTCCTCACTATGGCCTTCTACAAAAAATGCAGAAATGATTTTCAAGGCCGGTTCTCTAACTGCCCTTTCAGTATTGATGTGATAAGTAT
TTTTAACAGAGGTGAGAACAACGAGGGCCAGGCTAATATCTCCTCAGCAGATGGGCTGCCACCAATTACATCTCTTGAGAGGGAAAGGAAAGATGGGAAACTTTGGAGAGAGCTTTGGAACAACATAAGGCTTAGTTGGATCCTTGTGAATAGAAGAGAAAAGCAAGCAGTCAACCTTGCTAGTTGGAGTCCCCTAGGAG
GACAAAGGCATTGGCCTACTGATAAGGATTTTCTTATACGCTTTGGTACCATACGTCCGGCCCATAAAATTCTGCCTTTTGGGATTGTTCAGTGTATCCTTGTGATGAAGTGTAAAATTTCAGATGATAGTGTTGGAGATGGTTCCTGTACGACTCTAAAGCTGACTGAGCTTGGCATGCAGTTGGAAGACATAGGGGGT
GCCCATGTAAATGGACGGAACAGTCTGATCATCCTTAAAAGAGCTCTAAATTGCCATAGAACTATGAACTACAACAATGTCTTAGAATCTTATCATCAATATTTGAAAGCACAGAATGAGTTAAAGGATGAGAAGATGAAGGCTGAAAGCTTGATTGATACACTTTGTGCTCTAGGTGGAATTACTGCATTTGCCATATG
TTGTTTCCTCGTTCTTTGAGAGATACATGGTTGATGTTAAAATATTCTCTGGCCTGTTTCCAATCCAGACAGAGCTGCATGTTCTATGCACCCTAGCAATTCATCAATCTGGTGCAAGGTCACAGTCATTCAAGCGTAATTATCAAATTTAAAAGAGATTTGTACAGCAGGGTAAATGGCTTGTGTTCACTGGAACATCG
TAGCCTTTTTTATTTTTTTAAATTAATATATGTGTCTTGAGGTTTCAACTTGTG

>TRINITY_DN40981_c4_g1_i4 from sample A9 / Example unspliced isoform:

TTCAGATATTCGAACTTAGAAAACTGTGCAAGAGGCCCAGTTGAGTGTTCACACAGCGGGACTTTTTTTTGACAGTGCAGAGACTATTCTGATCCAAGAGCAAGAAGTCATGGAGTTCCATTAAATCACTGCAGCCAATACAATTACATGCATGCATGCATCACAGGAATTTGGGGGATCATGTCTTTAAATGCTGACCT
AATTTGTGAGATCTTAAAGCGGGTGGATGGCGCTACACTTGCAAATGCAGGATGTGCATCGTCTCTCTTACGTTCTGCTGCAAGAGAAGAACATATTTGGGAGGAATTATGCTCCTCACTATGGCCTTCTACAAAAAATGCAGAAgtaagaagtttgatttttgcattgggtggcttttggaagttctacacagattgct
ttccaatggttctgcatgcagagagagtttctgctattcactgcaatttggaattcggcaaatcagaagaattgcggtccgagttctgtgataaagaggtccatagtgtttctccctctgattttgtttcacttgttgatttgcattatagagataaagtaatttattccaaaatactttggggaatcccatgtgcagAT
GATTTTCAAGGCCGGTTCTCTAACTGCCCTTTCAGTATTGATGTGATAAGTATTTTTAACAGAGGTGAGAACAACGAGGGCCAGGCTAATATCTCCTCAGCAGATGGGCTGCCACCAATTACATCTCTTGAGAGGGAAAGGAAAGATGGGAAACTTTGGAGAGAGCTTTGGAACAACATAAGGCTTAGTTGGATCCTTGT
GAATAGAAGAGAAAAGCAAGCAGTCAACCTTGCTAGTTGGAGTCCCCTAGGAGGACAAAGGCATTGGCCTACTGATAAGGATTTTCTTATACGCTTTGGTACCATACGTCCGGCCCATAAAATTCTGCCTTTTGGGATTGTTCAGTGTATCCTTGTGATGAAGTGTAAAATTTCAGATGATAGTGTTGGAGATGGTTCCT
GTACGACTCTAAAGCTGACTGAGCTTGGCATGCAGTTGGAAGACATAGGGGGTGCCCATGTAAATGGACGGAACAGTCTGATCATCCTTAAAAGAGCTCTAAATTGCCATAGAACTATGAACTACAACAATGTCTTAGAATCTTATCATCAATATTTGAAAGCACAGAATGAGTTAAAGGATGAGAAGATGAAGGCTGAA
AGCTTGATTGATACACTTTGTGCTCTAGGTGGAATTACTGCATTTGCCATATGTTGTTTCCTCGTTCTTTGAGAGATACATGGTTGATGTTAAAATATTCTCTGGCCTGTTTCCAATCCAGACAGAGCTGCATGTTCTATGCACCCTAGCAATTCATCAATCTGGTGCAAGGTCACAGTCATTCAAGCGTAATTATCAAA
TTTAAAAGAGATTTGTACAGCAGGGTAAATGGCTTGTGTTCACTGGAACATCGTAGCCTTTTTTATTTTTTTAAATTAATATATGTGTCTTGAGGTTTCAACTTGTG