sp|Q9SEL7|DEGP5_ARATH ----> Protease Do-like 5, chloroplastic
Intron 1 GTATTTGGTA ... CCATTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.58 | 13 | 3 | 9 |
| A2 | 20 | 2 | 0 | 1 |
| A3 | 25 | 6 | 1 | 3 |
| A4 | 15.79 | 8 | 0 | 3 |
| A5 | 14.29 | 9 | 0 | 3 |
| A6 | 20 | 20 | 1 | 9 |
| A7 | 18.92 | 45 | 8 | 13 |
| A8 | 24.77 | 41 | 4 | 23 |
| A9 | 18.18 | 36 | 8 | 8 |
| A10 | 21.05 | 15 | 3 | 5 |
>TRINITY_DN106665_c0_g1_i1 from sample A1 / Example spliced isoformGGAGGATTGTGGGTGACAGGCAACCATGAGGATGAATGTGGGTGTGAATGGGACTGCCATGCTCAGCGTTCTCAATGCTGCACGCCCAATTTTTGTGGCTCCTTTCAACAGCCTTCCCACAGCAAAGGAAATTCCATCTGATACAAGTGTTCTGTTGGACAGGAAAATCCCATCTACTCCAAGTGCTCTGTTGGGCAGGA
GAACTACAGCACTGAGTTTGGCTTTGCTTCCCTCACTGTTCATGCCCACTTGTCTATCTTCACCTTCCAAAGCAAATGCCGACAATCAGTACCAACAAGATGATGATGAAGAAGAAAGAGTAGTTCGTCTTTTCCAGGAGACAACAAGATCAGTTGTGTCTATCAAGGATATTGAAGTGTCAAACTCCAAGACAGCTAGC
CAGTCATCGACATCGGAAGTAGCAGATGCAATAGTGGAAGGCACGGGTTCAGGGTTTGTTTGGGACAAGCTGGGTCATATTGCAACAGGTTACAAATTATCATGTTGTTGCTAAACTGGCTTCAGATACAACAGGTCGACAACAATGTGAGGTATCCCTTCTAGATACAGAGGGCAATGCAATTGTGAAGGAAGGAAAAC
TGATTGGCATTGATGCTGCACATGATTTAGCAGTTTTGAAGGTTGATGTTCCAGAGAACTATCTTAAGCCAGTCATGCTTGGTAGTTCCCAAAGTTTACAAGTAGGACAGAGCTGCTTTGCCATTGGAAATCCCTATGGATATGATCACACTCTAACAACAGGGGTGGTTAGTGGACTAGGCCGAGAAATACCATCTCCA
ATTGGAAGGCCCATCCAAGGAGCAATTCAGACAGATGCAGCAATAAATGGAGGAAATTCTGGG
>TRINITY_DN106665_c0_g1_i2 from sample A1 / Example unspliced isoform:GGAGGATTGTGGGTGACAGGCAACCATGAGGATGAATGTGGGTGTGAATGGGACTGCCATGCTCAGCGTTCTCAATGCTGCACGCCCAATTTTTGTGGCTCCTTTCAACAGCCTTCCCACAGCAAAGGAAATTCCATCTGATACAAGTGTTCTGTTGGACAGGAAAATCCCATCTACTCCAAGTGCTCTGTTGGGCAGGA
GAACTACAGCACTGAGTTTGGCTTTGCTTCCCTCACTGTTCATGCCCACTTGTCTATCTTCACCTTCCAAAGCAAATGCCGACAATCAGTACCAACAAGATGATGATGAAGAAGAAAGAGTAGTTCGTCTTTTCCAGGAGACAACAAGATCAGTTGTGTCTATCAAGGATATTGAAGTGTCAAACTCCAAGACAGCTAGC
CAGTCATCGACATCGGAAGTAGCAGATGCAATAGTGGAAGGCACGGGTTCAGGGTTTGTTTGGGACAAGCTGGGTCATATTGCAACAGGTTACAAATTATCATGTTGTTGCTAAACTGGCTTCAGATACAACAGGTCGACAACAATGTGAGGTATCCCTTCTAGATACAGAGGGCAATGCAATTGTGAAGGAAGGAAAAC
TGATTGGCATTGATGCTGCACATGATTTAGCAGTTTTGAAGgtatttggtactaaactcacctttcttgtcaagattgttttggagcttactgatatgattttgtttccattttaagGTTGATGTTCCAGAGAACTATCTTAAGCCAGTCATGCTTGGTAGTTCCCAAAGTTTACAAGTAGGACAGAGCTGCTTTGCCAT
TGGAAATCCCTATGGATATGATCACACTCTAACAACAGGGGTGGTTAGTGGACTAGGCCGAGAAATACCATCTCCAATTGGAAGGCCCATCCAAGGAGCAATTCAGACAGATGCAGCAATAAATGGAGGAAATTCTGGG
Intron 2 GTGGTTAGTG ... ATAAATGGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 6 | 13 | 7 |
| A2 | 62.5 | 3 | 6 | 4 |
| A3 | 66.67 | 2 | 6 | 2 |
| A4 | 60 | 4 | 10 | 2 |
| A5 | 64.67 | 4 | 10 | 4.7 |
| A6 | 75.42 | 9.7 | 26 | 32.7 |
| A7 | 66.32 | 16.8 | 31 | 33.5 |
| A8 | 67.24 | 24.8 | 47 | 49.8 |
| A9 | 67.55 | 14.3 | 35 | 24.7 |
| A10 | 62.73 | 8.3 | 17 | 11 |
>TRINITY_DN99120_c0_g2_i1 from sample A2 / Example spliced isoformCTGGCAACCATGAGGATGAATGTGGGTGTGAATGGGACTGCCATGCTCAGCGTTCTCAATGCTGCACGCCCAATTTTTGTGGCTCCTTTCAACAGCCTTCCCACAGCAAAGGAAATTCCATCTGATACAAGTGTTCTGTTGGACAGGAAAATCCCATCTACTCCAAGTGCTCTGTTGGGCAGGAGAACTACAGCACTGAG
TTTGGCTTTGCTTCCCTCACTGTTCATGCCCACTTGTCTATCTTCACCTTCCAAAGCAAATGCCGACAATCAGTACCAACAAGATGATGATGAAGAAGAAAGAGTAGTTCGTCTTTTCCAGTAGGAGACAACAAGATCAGTTGTGTCTATCAAGGATATTGAAGTGTCAAACTCCAAGACAGCTAGCCAGTCATCGACAT
CGGAAGTAGCAGATGCAATAGTGGAAGGCACGGGTTCAGGGTTTGTTTGGGACAAGCTGGGTCATATTGTTACAAATTATCATGTTGTTGCTAAACTGGCTTCAGATACAACAGGTCGACAACAATGTGAGGTATCCCTTCTAGATACAGAGGGCAATGCAATTGTGAAGGAAGGAAAACTGATTGGCATTGATGCTGCA
CATGATTTAGCAGTTTTGAAGGTTGATGTTCCAGAGAACTATCTTAAGCCAGTCATGCTTGGTAGTTCCCAAAGTTTACAAGTAGGACAGAGCTGCTTTGCCATTGGAAATCCCTATGGATATGATCACACTCTAACAACAGGGGAAATTCTGGGGGTCCTCTAATTGATTCATTTGGCCATGTTATTGGTGTCAACACT
GCTACCTTC
>TRINITY_DN99120_c0_g2_i3 from sample A2 / Example unspliced isoform:CTGGCAACCATGAGGATGAATGTGGGTGTGAATGGGACTGCCATGCTCAGCGTTCTCAATGCTGCACGCCCAATTTTTGTGGCTCCTTTCAACAGCCTTCCCACAGCAAAGGAAATTCCATCTGATACAAGTGTTCTGTTGGACAGGAAAATCCCATCTACTCCAAGTGCTCTGTTGGGCAGGAGAACTACAGCACTGAG
TTTGGCTTTGCTTCCCTCACTGTTCATGCCCACTTGTCTATCTTCACCTTCCAAAGCAAATGCCGACAATCAGTACCAACAAGATGATGATGAAGAAGAAAGAGTAGTTCGTCTTTTCCAGTAGGAGACAACAAGATCAGTTGTGTCTATCAAGGATATTGAAGTGTCAAACTCCAAGACAGCTAGCCAGTCATCGACAT
CGGAAGTAGCAGATGCAATAGTGGAAGGCACGGGTTCAGGGTTTGTTTGGGACAAGCTGGGTCATATTGTTACAAATTATCATGTTGTTGCTAAACTGGCTTCAGATACAACAGGTCGACAACAATGTGAGGTATCCCTTCTAGATACAGAGGGCAATGCAATTGTGAAGGAAGGAAAACTGATTGGCATTGATGCTGCA
CATGATTTAGCAGTTTTGAAGGTTGATGTTCCAGAGAACTATCTTAAGCCAGTCATGCTTGGTAGTTCCCAAAGTTTACAAGTAGGACAGAGCTGCTTTGCCATTGGAAATCCCTATGGATATGATCACACTCTAACAACAGGGgtggttagtggactaggccgagaaataccatctccaattggaaggcccatccaagg
agcaattcagacagatgcagcaataaatggagGAAATTCTGGGGGTCCTCTAATTGATTCATTTGGCCATGTTATTGGTGTCAACACTGCTACCTTC