sp|Q94AM1|OOPDA_ARATH ----> Organellar oligopeptidase A, chloroplastic/mitochondrial
Intron 1 GTAAGCAATG ... CATATTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.89 | 3 | 24 | 24 |
| A2 | 73.68 | 15 | 31 | 53 |
| A3 | 83.33 | 16 | 67 | 93 |
| A4 | 71.43 | 12 | 24 | 36 |
| A5 | 76.6 | 11 | 25 | 47 |
| A6 | 73.08 | 7 | 7 | 31 |
| A7 | 75 | 18 | 41 | 67 |
| A8 | 75.51 | 6 | 13 | 24 |
| A9 | 79.8 | 10 | 26 | 53 |
| A10 | 77.03 | 24 | 69 | 92 |
>TRINITY_DN46349_c0_g1_i2 from sample A7 / Example spliced isoformCATTTATCTAACCCAACTAATACCAACCAAAAGATTCACAAGAACGCCGGGCTATGTACCTTGCTCTGGGATCGAAAAGGGAGTAGACAGTGGGTCTTCTAAATTATAACTTTGCGAAGTATTCCACCACCATTTTCACTGCTGCAAGGCCTTCAGCAGGTATCAGGTGCAAAAGAACATTTTCTTCAAATCCCCGTTGC
GCGAGTTCGAGTCTGAGCGAGGTGCAAAGAATGGCCGGAGGAGTAGAGATATTGGAGAACCCACTGCTGCAAGATGGACCTTTTCCTCGTTTCGATGCTGTGGAGTCCAAGCACGTTTGCCCTGGCATCAGGGCTCTCTTGCAACAACTGGAAAATGATTTAGCTGAACTGGAAAGAACAGTGCAGCCAACTTGGCCTGG
ACTAGTTGAGCCTTTGGAGAAAATTGTGGATCGTCTCACTGTTGTATGGGGAGTTGTAAACCATCTTAAATCTGTCAAAGATTCTGAAGATCTTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGAAATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAAGCTATTCAGGAAGGTCCTA
TTTGGGAGACACTGAGTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACACTTAATGGTGTTGCCTTGGAAGGGGATGCTAAAGAGCGCTTCAATGAAATCCAACAGGAGTTGGAAAAACTTTCATTAAAATTTAATGAAAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGGTAATAACAGACAAG
CAGGATATTGAGGGATTGCCACCGACTGCTCTTGGTCTTGCTGCTCAAACAGCAGTATCTAAGGGTTATGAAGGTGCAACTGCTGAGAATGGGCCATGGGTTGTCACATTAGATATACCAAGCTACCTGCCTGTTGCACAGCATGCACGTAATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCATC
TAGTGGAAAGTTAGATAACACACCAGTTATTGATCAGATTTTGAGACTTCGATCAGAGAGAGCTAAACTGCTTGGATACAATAATTATGCAGAGGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTGGAAAAGATTCGGAGTGCTTCATGGGATTCTGCTGTGCAAGAGCTGGAAGACTTGA
AGACGTTTGCGATAGAACAACATGCTGAAGAAGGTAATGATATGTGCCATTGGGATATCAGCTTTTGGAGCGAGCGGCTTCGTGAGGCTAAGTATGACATAAATGAGGAAGAGTTGCGCCCATTTTTCTCATTGCCAAAAGTAATGGAAAGCCTTTTCGCCCTTGCAAAAATGCTTTTCGAAATTGATATTGAACCTGCA
GATGGTCTTGCTCCAGTGTGGAACAATGATGTAAGATTTTATGCAGTCAAAGACTTATCAGGAAGTCCAGTTGCGTATTTCTATTTTGATCCATACTCTAGGCCCTCAGAGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACAGGATGGTAGTTCAGTAAGGCTACCCATAGCACA
CATGGTTTGCAACCAGACACCACCGGTTGGAGATAAGCCAAGTCTAATGACTTTCCGTGAGGTTGAGACCGTATTCCATGAATTTGGTCATGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTT
ACCACAGGGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTAAAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTT
GATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGATATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGG
TAGAAGATTTAGGGATACTATTCTTGCTTTGGGAGGTGGCCGGTCACCATTGCAGGTTTTCATGGATTTCCGGGGTAGAGAACCATCTACAGACCCACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCAC
ACTGCCATTTACCACTGTCATTTGCACAGATCCTTGTTACATTTATTTTGTAATCCACGTTAAAAATTGCTAGTGGCAGCATCTTGGAGAAACAAAGTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGAAATATGATAGAAATTGTCGGTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAA
AGCATGAAACTAAGCATGTAAGAGCTACAAATATAAATTGTTGTAAAAGGCACAAGAACTCGATGAAACTTGATGCTAGTTTTACCACAAGGGTATGAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTC
CATTAATTCTTGGCATTTTCTTTACCAAAAGCTCTTCATAATTATCAAGATTCTGACACAAAATTGTAACTGGCAATAGTTTTCCTGGAAACACCAAATATTCTTTCAACTTTATCGAATTTCTGAGTAGGATTTTGCATCAATTTTTAGTGATTGCTAGTAACGACTATAAATGAGAA
>TRINITY_DN46349_c0_g1_i9 from sample A7 / Example unspliced isoform:CATTTATCTAACCCAACTAATACCAACCAAAAGATTCACAAGAACGCCGGGCTATGTACCTTGCTCTGGGATCGAAAAGGGAGTAGACAGTGGGTCTTCTAAATTATAAgtaagcaatggcgtcacacatttcttctattcgcctatgtcgcgtcgttcccggctgcattcattggaaacccttcacccgttcctccatt
ttcgttgactctcggaggcttgtttcatattccagCTTTGCGAAGTATTCCACCACCATTTTCACTGCTGCAAGGCCTTCAGCAGGTATCAGGTGCAAAAGAACATTTTCTTCAAATCCCCGTTGCGCGAGTTCGAGTCTGAGCGAGGTGCAAAGAATGGCCGGAGGAGTAGAGATATTGGAGAACCCACTGCTGCAAGA
TGGACCTTTTCCTCGTTTCGATGCTGTGGAGTCCAAGCACGTTTGCCCTGGCATCAGGGCTCTCTTGCAACAACTGGAAAATGATTTAGCTGAACTGGAAAGAACAGTGCAGCCAACTTGGCCTGGACTAGTTGAGCCTTTGGAGAAAATTGTGGATCGTCTCACTGTTGTATGGGGAGTTGTAAACCATCTTAAATCTG
TCAAAGATTCTGAAGATCTTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGAAATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAAGCTATTCAGGAAGGTCCTATTTGGGAGACACTGAGTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACACTTAATGGTGTT
GCCTTGGAAGGGGATGCTAAAGAGCGCTTCAATGAAATCCAACAGGAGTTGGAAAAACTTTCATTAAAATTTAATGAAAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGGTAATAACAGACAAGCAGGATATTGAGGGATTGCCACCGACTGCTCTTGGTCTTGCTGCTCAAACAGCAGTATCTAAGGGTTATGAAGG
TGCAACTGCTGAGAATGGGCCATGGGTTGTCACATTAGATATACCAAGCTACCTGCCTGTTGCACAGCATGCACGTAATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCATCTAGTGGAAAGTTAGATAACACACCAGTTATTGATCAGATTTTGAGACTTCGATCAGAGAGAGCTAAACTGCTTG
GATACAATAATTATGCAGAGGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTGGAAAAGATTCGGAGTGCTTCATGGGATTCTGCTGTGCAAGAGCTGGAAGACTTGAAGACGTTTGCGATAGAACAACATGCTGAAGAAGGTAATGATATGTGCCATTGGGATATCAGCTTTTGGAGCGAG
CGGCTTCGTGAGGCTAAGTATGACATAAATGAGGAAGAGTTGCGCCCATTTTTCTCATTGCCAAAAGTAATGGAAAGCCTTTTCGCCCTTGCAAAAATGCTTTTCGAAATTGATATTGAACCTGCAGATGGTCTTGCTCCAGTGTGGAACAATGATGTAAGATTTTATGCAGTCAAAGACTTATCAGGAAGTCCAGTTGC
GTATTTCTATTTTGATCCATACTCTAGGCCCTCAGAGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACAGGATGGTAGTTCAGTAAGGCTACCCATAGCACACATGGTTTGCAACCAGACACCACCGGTTGGAGATAAGCCAAGTCTAATGACTTTCCGTGAGGTTGAGACCGTAT
TCCATGAATTTGGTCATGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGTGATTGGGCTCTAGCATCTCTGTTGCATGGATTGTTTTGGCATGGACACACTTATGGGCATTGCTA
AGCATTACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTAAAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTT
GTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGATATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTT
GGGAGGTGGCCGGTCACCATTGCAGGTTTTCATGGATTTCCGGGGTAGAGAACCATCTACAGACCCACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGA
TCCTTGTTACATTTATTTTGTAATCCACGTTAAAAATTGCTAGTGGCAGCATCTTGGAGAAACAAAGTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGAAATATGATAGAAATTGTCGGTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAA
ATATAAATTGTTGTAAAAGGCACAAGAACTCGATGAAACTTGATGCTAGTTTTACCACAAGGGTATGAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAA
GCTCTTCATAATTATCAAGATTCTGACACAAAATTGTAACTGGCAATAGTTTTCCTGGAAACACCAAATATTCTTTCAACTTTATCGAATTTCTGAGTAGGATTTTGCATCAATTTTTAGTGATTGCTAGTAACGACTATAAATGAGAA
Intron 2 GTGTGGAACA ... TTTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.66 | 12 | 13 | 24 |
| A2 | 60 | 10 | 11 | 19 |
| A3 | 61.11 | 14 | 14 | 30 |
| A4 | 55 | 18 | 16 | 28 |
| A5 | 61.54 | 5 | 6 | 10 |
| A6 | 41.72 | 44 | 37 | 26 |
| A7 | 42.27 | 56 | 37 | 45 |
| A8 | 52.94 | 48 | 47 | 61 |
| A9 | 53.85 | 33 | 34 | 43 |
| A10 | 53.85 | 24 | 21 | 35 |
>TRINITY_DN42015_c0_g3_i3 from sample A9 / Example spliced isoformCTTTATTTAGAGTTTGTTCACGGGCTTTTGATTCCTCGGCTGTGGAAGCCCTCGAGAAGATGATACAGGGTTTTGATTCCTCGGCTATGCTCTACAGGTTTATGTCCCCTCCCGAGTTCGAGGTGCATAATGTGTCAGGCACCAAAGAAGTCAAAGACTTATCAAGAATTCCAGTTGCGTATTTCTATTTTGATACATAC
TTTAGGCCATCAGGGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACCGGAAGGTAGTCCAGTAAGGCTACCCATAGCACACATGGTTTGCAACTAGACACCACTGGTTGGAGATAAACCAAGTCTAATGACTTTCCGTGAGGTTGAGACCGTATTCCATGAATTTGGTCATGCATT
ACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTAAAACAT
TCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGATATGGA
GCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTTGGGAGGTGGCCGGCCACCATTGCAGGTTTTCATGGATTTCCGGGGTAGAGAACCATCTACAGACCC
ACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGATCCTTGTTACATTTATTTTGTAATCCACGTTAAAAATTGCTAGTGGCAGCATCTTGGAGAAACGAA
GTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGGAATATGATAGAAATTTTCAGTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAAATATAAATTGTTGTAAAAGGCACAAGAACTCGATGAAACTTGATGCTAGTTTTACCACAAGGGTAT
GAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAAGCTCTTCATAATTATCAAGATTTTGACACAAAATTGTAACTGGCAATAGTTTTCCTGGAAACACCA
AATATTCTTTCAACTTTATCGAATTTCTGAG
>TRINITY_DN42015_c0_g3_i6 from sample A9 / Example unspliced isoform:CTTTATTTAGAGTTTGTTCACGGGCTTTTGATTCCTCGGCTGTGGAAGCCCTCGAGAAGATGATACAGGGTTTTGATTCCTCGGCTATGCTCTACAGGTTTATGTCCCCTCCCGAGTTCGAGGTGCATAATGTGTCAGGCACCAAAGAAGgtgtggaacaatgatgtaatattttatgcagTCAAAGACTTATCAAGAAT
TCCAGTTGCGTATTTCTATTTTGATACATACTTTAGGCCATCAGGGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACCGGAAGGTAGTCCAGTAAGGCTACCCATAGCACACATGGTTTGCAACTAGACACCACTGGTTGGAGATAAACCAAGTCTAATGACTTTCCGTGAGGTTG
AGACCGTATTCCATGAATTTGGTCATGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAA
ATATATGTGAAGCTTGTAGAAGCTAAAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAG
TTTCCTTCATATCTTTGCAGGTGGATATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTTGGGAGGTGGCCGGCCACCATTGCAGGTTTTCATGG
ATTTCCGGGGTAGAGAACCATCTACAGACCCACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGATCCTTGTTACATTTATTTTGTAATCCACGTTAAAA
ATTGCTAGTGGCAGCATCTTGGAGAAACGAAGTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGGAATATGATAGAAATTTTCAGTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAAATATAAATTGTTGTAAAAGGCACAAGAACTCGATG
AAACTTGATGCTAGTTTTACCACAAGGGTATGAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAAGCTCTTCATAATTATCAAGATTTTGACACAAAATT
GTAACTGGCAATAGTTTTCCTGGAAACACCAAATATTCTTTCAACTTTATCGAATTTCTGAG
Intron 3 GTATATTATA ... CTGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.96 | 73 | 23 | 0 |
| A2 | 26.32 | 70 | 25 | 0 |
| A3 | 27.88 | 75 | 29 | 10 |
| A4 | 32.18 | 59 | 28 | 14.2 |
| A5 | 20 | 12 | 3 | 0 |
| A6 | 24 | 19 | 6 | 0 |
| A7 | 12.09 | 80 | 11 | 4 |
| A8 | 27.45 | 37 | 14 | 0 |
| A9 | 20.22 | 71 | 18 | 0 |
| A10 | 17.77 | 64 | 13.8 | 6 |
>TRINITY_DN114227_c0_g1_i3 from sample A3 / Example spliced isoformCTAATACCAACCAAAAGATTCACAAGAACGCCGGGCTATGTACCTTGCTCTGGGATCGAAAAGGGAGTAGACAGTGGGTCTTCTAAATTATAAGTAAGCAATGGCGTCACACATTTCTTCTATTCGCCTATGTCGCGTCGTTCCCGGCTGCATTCATTGGAAACCCTTCACCCGTTCCTCCATTTTCGTTGACTCTCGGA
GGCTTGTTTCATATTCCAGCTTTGCGAAGTATTCCACCACCATTTTCACTGCTGCAAGGCCTTCAGCAGGTATCAGGTGCAAAAGAACATTTTCTTCAAATCCCCGTTGCGCGAGTTCGAGTCTGAGCGAGGTGCAAAGAATGGCCGGAGGAGTAGAGATATTGGAGAACCCACTGCTGCAAGATGGACCTTTTCCTCGT
TTCGATGCTGTGGAGTCCAAGCACGTTTGCCCTGGCATCAGGGCTCTCTTGCAACAACTGGAAAATGATTTAGCTGAACTGGAAAGAACAGTGCAGCCAACTTGGCCTGGACTAGTTGAGCCTTTGGAGAAAATTGTGGATCGTCTCACTGTTGTATGGGGAGTTGTAAACCATCTTAAATCTGTCAAAGATTCTGAAGA
TCTTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGAAATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAAGCTATTCAGGAAGGTCCTATTTGGGAGACACTGAGTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACACTTAATGGTGTTGCCTTGGAAGGGGATG
CTAAAGAGCGCTTCAATGAAATCCAACAGGAGTTGGAAAAACTTTCATTAAAATTTAATGAAAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGGTAATAACAGACAAGCAGGATATTGAGGGATTGCCACCGACTGCTCTTGGTCTTGCTGCTCAAACAGCAGTATCTAAGGGTTATGAAGGTGCAACTGCTGAGAAT
GGGCCATGGGTTGTCACATTAGATATACCAAGCTACCTGCCTGTTGCACAGCATGCACGTAATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCATCTAGTGGAAAGTTAGATAACACACCAGTTATTGATCAGATTTTGAGACTTCGATCAGAGAGAGCTAAACTGCTTGGATACAATAATTATGC
AGAGGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTGGAAAAGATTCGGAGTGCTTCATGGGATTCTGCTGTGCAAGAGCTGGAAGACTTGAAGACGTTTGCGATAGAACAACATGCTGAAGAAGGTAATGATATGTGCCATTGGGATATCAGCTTTTGGAGCGAGCGGCTTCGTGAGGCTA
AGTATGACATAAATGAGGAAGAGTTGCGCCCATTTTTCTCATTGCCAAAAGTAATGGAAAGCCTTTTCGCCCTTGCAAAAATGCTTTTCGAAATTGATATTGAACCTGCAGATGGTCTTGCTCCAGTGTGGAACAATGATGTAAGATTTTATGCAGTCAAAGACTTATCAGGAAGTCCAGTTGCGTATTTCTATTTTGAT
CCATACTCTAGGCCCTCAGAGAAGCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACAGGATGGTAGTTCAGTAAGGCTACCCATAGCACACATGGTTTGCAACCAGACACCACCGGTTGGAGATAAGCCAAGTCTAATGACTTTCCGTGAGGTTGAGACCGTATTCCATGAATTTGGTCA
TGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGAGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTA
AAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGA
TATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGTTGAGACCGTATTCCATGAATTTGGTCATGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGA
ACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTAAAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATG
TTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGATATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGA
CTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTTGGGAGGTGGCCGGCCACCATTGCAGGTTTTCATGGATTTCCGGGGTAGAGAACCATCTACAGACCCACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAA
CAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGATCCTTGTTACATTTATTTTGTAATCCACGTTAAAAATTGCTAGTGGCAGCATCTTGGAGAAACGAAGTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGGAATATGATAGAAATTTTCAGTGACAATA
ATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAAATATAAATTGTTGTAAAAGGCACAAGAACTCGATGAAACTTGATGCTAGTTTTACCACAAGGGTATGAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTT
TCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAAGCTCTTCATAATTATCAAGATTCTGACACAAAATTGTAAC
>TRINITY_DN114227_c0_g1_i4 from sample A3 / Example unspliced isoform:CTAATACCAACCAAAAGATTCACAAGAACGCCGGGCTATGTACCTTGCTCTGGGATCGAAAAGGGAGTAGACAGTGGGTCTTCTAAATTATAAGTAAGCAATGGCGTCACACATTTCTTCTATTCGCCTATGTCGCGTCGTTCCCGGCTGCATTCATTGGAAACCCTTCACCCGTTCCTCCATTTTCGTTGACTCTCGGA
GGCTTGTTTCATATTCCAGCTTTGCGAAGTATTCCACCACCATTTTCACTGCTGCAAGGCCTTCAGCAGGTATCAGGTGCAAAAGAACATTTTCTTCAAATCCCCGTTGCGCGAGTTCGAGTCTGAGCGAGGTGCAAAGAATGGCCGGAGGAGTAGAGATATTGGAGAACCCACTGCTGCAAGATGGACCTTTTCCTCGT
TTCGATGCTGTGGAGTCCAAGCACGTTTGCCCTGGCATCAGGGCTCTCTTGCAACAACTGGAAAATGATTTAGCTGAACTGGAAAGAACAGTGCAGCCAACTTGGCCTGGACTAGTTGAGCCTTTGGAGAAAATTGTGGATCGTCTCACTGTTGTATGGGGAGTTGTAAACCATCTTAAATCTGTCAAAGATTCTGAAGA
TCTTCGTTCAGCTATTGAGGAAGTGCAGCCTGAAAAAGTGAAATTTCAACTTAGACTAGGACAAAGCAAACCTATCTTCAATGCATTCAAAGCTATTCAGGAAGGTCCTATTTGGGAGACACTGAGTGAAGCCCAAAAACGGATAGTTGAAGTTGAGATTAAGGAAGCCACACTTAATGGTGTTGCCTTGGAAGGGGATG
CTAAAGAGCGCTTCAATGAAATCCAACAGGAGTTGGAAAAACTTTCATTAAAATTTAATGAAAACGTTTTGGATGCAACAAAAAGCTTTGAGAAGGTAATAACAGACAAGCAGGATATTGAGGGATTGCCACCGACTGCTCTTGGTCTTGCTGCTCAAACAGCAGTATCTAAGGGTTATGAAGGTGCAACTGCTGAGAAT
GGGCCATGGGTTGTCACATTAGATATACCAAGCTACCTGCCTGTTGCACAGCATGCACGTAATCGCAGTCTTCGTGAGGAGCTCTATCGTGCTTATGTTACTCGTGCATCTAGTGGAAAGTTAGATAACACACCAGTTATTGATCAGATTTTGAGACTTCGATCAGAGAGAGCTAAACTGCTTGGATACAATAATTATGC
AGAGgtatattatatccctctagatgtttcccagctatgctggctaaagctgattgattcattaatgaacttagactgtttccagGTAAGTATGGCCATGAAAATGGCAACTGTTGAGAAAGCTGAAGAACTCTTGGAAAAGATTCGGAGTGCTTCATGGGATTCTGCTGTGCAAGGTAACAGGTGGCAATTGTTATAAA
ATAGTGGTTTAATGTCAATATCCATCAAAGATGAACAATGAATTAGAACTTCCCTTTCAGAGCTACCTATGGCCCCAGAAAGTGGGCATTCACAAACTTTATGAAATAGTAACTTAATGAGGTGGTG
Intron 4 GTTTTGATTC ... TGCTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 3 | 3 |
| A2 | 100 | 0 | 5.3 | 5.5 |
| A3 | 77.64 | 1 | 3.3 | 3.8 |
| A4 | 100 | 0 | 12.5 | 12.5 |
| A5 | 85.59 | 1 | 5.8 | 6.3 |
| A6 | 94.8 | 3 | 54.3 | 56 |
| A7 | 88.9 | 6 | 46.8 | 50.3 |
| A8 | 97.17 | 1 | 34.3 | 34.8 |
| A9 | 80.97 | 8 | 31.3 | 37.3 |
| A10 | 91.11 | 2 | 21 | 22 |
>TRINITY_DN42015_c0_g3_i1 from sample A9 / Example spliced isoformCCCTTGAGAAGATGATACAGGGTTTATGTCCCCTCCAGAGTTCGAGGTGCATAATGTGTCAGGCACCAAAGAAGGGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACCGGAAGGTAGTCCAGTAAGGCTACCCATAGCACACATGGTTTGCAACTAGACACCACTGGTTGGAGATA
AACCAAGTCTAATGACTTTCCGTGAGGTTGAGACCGTATTCCATGAATTTGGTCATGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGGACACACTTATGGGCATTGCTAAGCAT
TACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTAAAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCC
ACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGATATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTTGGGAG
GTGGCCGGCCACCATTGCAGGTTTTCATGGATTTCCGGGGTAGAGAACCATCTACAGACCCACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGATCCTT
GTTACATTTATTTTGTAATCCACGTTAAAAATTGCTAGTGGCAGCATCTTGGAGAAACGAAGTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGGAATATGATAGAAATTTTCAGTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAAATATA
AATTGTTGTAAAAGGCACAAGAACTCGATGAAACTTGATGCTAGTTTTACCACAAGGGTATGAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAAGCTCT
TCATAATTATCAAGATTTTGACACAAAATTGTAACTGGCAATAGTTTTCCTGGAAACACCAAATATTCTTTCAACTTTATCGAATTTCTGAG
>TRINITY_DN42015_c0_g3_i3 from sample A9 / Example unspliced isoform:CTTTATTTAGAGTTTGTTCACGGGCTTTTGATTCCTCGGCTGTGGAAGCCCTCGAGAAGATGATACAGGgttttgattcctcggctatgctctacagGTTTATGTCCCCTCCCGAGTTCGAGGTGCATAATGTGTCAGGCACCAAAGAAGTCAAAGACTTATCAAGAATTCCAGTTGCGTATTTCTATTTTGATACATAC
TTTAGGCCATCAGGGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACCGGAAGGTAGTCCAGTAAGGCTACCCATAGCACACATGGTTTGCAACTAGACACCACTGGTTGGAGATAAACCAAGTCTAATGACTTTCCGTGAGGTTGAGACCGTATTCCATGAATTTGGTCATGCATT
ACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTAAAACAT
TCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGATATGGA
GCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTTGGGAGGTGGCCGGCCACCATTGCAGGTTTTCATGGATTTCCGGGGTAGAGAACCATCTACAGACCC
ACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGATCCTTGTTACATTTATTTTGTAATCCACGTTAAAAATTGCTAGTGGCAGCATCTTGGAGAAACGAA
GTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGGAATATGATAGAAATTTTCAGTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAAATATAAATTGTTGTAAAAGGCACAAGAACTCGATGAAACTTGATGCTAGTTTTACCACAAGGGTAT
GAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAAGCTCTTCATAATTATCAAGATTTTGACACAAAATTGTAACTGGCAATAGTTTTCCTGGAAACACCA
AATATTCTTTCAACTTTATCGAATTTCTGAG
Intron 5 GTGTGGAACA ... AGGCCATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.59 | 23.3 | 13 | 65 |
| A2 | 76.6 | 15 | 11 | 49 |
| A3 | 77.26 | 22.7 | 14 | 77 |
| A4 | 70.77 | 22 | 16 | 53 |
| A5 | 83.67 | 5.7 | 6 | 29 |
| A6 | 62.9 | 50 | 37 | 79 |
| A7 | 66.31 | 63.3 | 37 | 121 |
| A8 | 75.29 | 36 | 47 | 106 |
| A9 | 68.77 | 45 | 34 | 97 |
| A10 | 65.11 | 40.7 | 21 | 74 |
>TRINITY_DN42015_c0_g3_i2 from sample A9 / Example spliced isoformCTTTATTTAGAGTTTGTTCACGGGCTTTTGATTCCTCGGCTGTGGAAGCCCTCGAGAAGATGATACAGGGTTTTGATTCCTCGGCTATGCTCTACAGGTTTATGTCCCCTCCCGAGTTCGAGGTGCATAATGTGTCAGGCACCAAAGAAGGGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTG
CTTGCACCGGAAGGTAGTCCAGTAAGGCTACCCATAGCACACATGGTTTGCAACTAGACACCACTGGTTGGAGATAAACCAAGTCTAATGACTTTCCGTGAGGTTGAGACCGTATTCCATGAATTTGGTCATGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGA
TGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAAATATATGTGAAGCTTGTAGAAGCTAAAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATT
CAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAGTTTCCTTCATATCTTTGCAGGTGGATATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAA
GAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTTGGGAGGTGGCCGGCCACCATTGCAGGTTTTCATGGATTTCCGGGGTAGAGAACCATCTACAGACCCACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGA
AAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGATCCTTGTTACATTTATTTTGTAATCCACGTTAAAAATTGCTAGTGGCAGCATCTTGGAGAAACGAAGTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGGAATATGATAGAAATTTTCA
GTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAAATATAAATTGTTGTAAAAGGCACAAGAACTCGATGAAACTTGATGCTAGTTTTACCACAAGGGTATGAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTT
GCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAAGCTCTTCATAATTATCAAGATTTTGACACAAAATTGTAACTGGCAATAGTTTTCCTGGAAACACCAAATATTCTTTCAACTTTATCGAATTTCTGAG
>TRINITY_DN42015_c0_g3_i6 from sample A9 / Example unspliced isoform:CTTTATTTAGAGTTTGTTCACGGGCTTTTGATTCCTCGGCTGTGGAAGCCCTCGAGAAGATGATACAGGGTTTTGATTCCTCGGCTATGCTCTACAGGTTTATGTCCCCTCCCGAGTTCGAGGTGCATAATGTGTCAGGCACCAAAGAAGgtgtggaacaatgatgtaatattttatgcagtcaaagacttatcaagaat
tccagttgcgtatttctattttgatacatactttaggccatcagGGAATCGAGGTGGTGCATGGATGGATGAAGTTTTTGGCCGAAGTCGTGTGCTTGCACCGGAAGGTAGTCCAGTAAGGCTACCCATAGCACACATGGTTTGCAACTAGACACCACTGGTTGGAGATAAACCAAGTCTAATGACTTTCCGTGAGGTTG
AGACCGTATTCCATGAATTTGGTCATGCATTACAGCATATGCTTACCAAGCAAGACGAAGGCTTAGTAGCAGGTATTCGTGGTGTGGAGTGGGATGCTGTTGAACTTCCTTCTCAGTTTATGGAGAACTGGTGTTACCACAGGGACACACTTATGGGCATTGCTAAGCATTACAAAACTGGTGAGACACTCTCTGAAGAA
ATATATGTGAAGCTTGTAGAAGCTAAAACATTCAGGGCAGCTTCACAGAACTTACGTCAGATCCGATTTGCCAGTATTGATCTAGAACTGCATTCAAAGTATGTTCCTGGTAGTTCGGAGAGTATTTTCGATGTTGATCAGATGGTAGCTCAGAGGACACAGGTTGTTCCACCTTTGCAGGAGGATAGGTTCTTATGCAG
TTTCCTTCATATCTTTGCAGGTGGATATGGAGCAGGTTACTATAGCTACAAGTGGGCTGAGGTTCTTTCTGCAGATGCATTCTCAGCATTTGAAGAGGCTGGACTGGATAATGAAAAGGCTGTCAAGGAGACTGGTAGAAGATTTAGGGATACTATTCTTGCTTTGGGAGGTGGCCGGCCACCATTGCAGGTTTTCATGG
ATTTCCGGGGTAGAGAACCATCTACAGACCCACTCCTCAGGCATAATGGCTTGCTGCCAACTGCTGTGGCAGCTTAAGAGGAATCTGTGGCTGAAAAATTCAACAAGAATGGTATCCCTTTTGGATATGCAGCACACTGCCATTTACCACTGTCATTTGCACAGATCCTTGTTACATTTATTTTGTAATCCACGTTAAAA
ATTGCTAGTGGCAGCATCTTGGAGAAACGAAGTACATGTTCTTTTGGGAACAAGTTGGCTGGAATTTAGTGAAGGAATATGATAGAAATTTTCAGTGACAATAATGTATAAACTGTAAAACAGGAATGATCATAAAGCATGAAACTAAGCATGTAAGAGCTACAAATATAAATTGTTGTAAAAGGCACAAGAACTCGATG
AAACTTGATGCTAGTTTTACCACAAGGGTATGAGTCATTATTTCCTTGCAAATTGGCAGTCAAATAGTAGTCCCTGTTTCAGTGACTGAGACTTGCAGGTGTTTCATTCTTATATGAACGGGATTATCATAATTCCATTAATTCTTGGCATTTTCTTTACCAAAAGCTCTTCATAATTATCAAGATTTTGACACAAAATT
GTAACTGGCAATAGTTTTCCTGGAAACACCAAATATTCTTTCAACTTTATCGAATTTCTGAG