sp|Q66LG9|CENPC_ARATH ----> Centromere protein C
Intron 1 GTGAGTTTTC ... TTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.09 | 97 | 20 | 1 |
| A2 | 20.62 | 77 | 20 | 0 |
| A3 | 27.97 | 103 | 40 | 2 |
| A4 | 25.53 | 70 | 24 | 2 |
| A5 | 18.18 | 27 | 6 | 0 |
| A6 | 50 | 2 | 2 | 0 |
| A7 | 24.39 | 62 | 20 | 0 |
| A8 | 34.48 | 19 | 10 | 0 |
| A9 | 12.5 | 35 | 5 | 1 |
| A10 | 15.49 | 60 | 11 | 0 |
>TRINITY_DN104209_c0_g1_i8 from sample A4 / Example spliced isoformCCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGCGTGAGTAACAGAGGAGGAGGAGGTGCAGGTGCAGGGTTTGAATGTCGGAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCT
TCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATAC
TGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATTTGCA
GTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGCTGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGAAAATCTGCCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGAGAAGGTAGCGGG
CGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCAGTTCCATGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAATGAGAAAATGGAGGGGAGAAAAATCACCTGATATAGTTTGTAGCCAACCTCTCAAGAC
ACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAAAAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTCACTGATTCTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAAATAGAGAAATAA
ATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCAAAAAGATACTCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGCACATTGTGCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGAGCCATTTCAACA
TTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTCTCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGGACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGATGTGCAATTTGA
CACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGAGTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGCTAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGCCTTCAAGAATTT
CAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTTTGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATATCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGAAGATTGAATTTT
GGTGGTGTTTCTCAATCACCAGACTTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATTTGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCCGGGGATAAAGGTGCATCTGAAGATGCAAGTAAACCATCCTTTGAAAACAGAGATGAAGAGGCACC
CAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAATATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCCTTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTGCATCTGTAGATG
CATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGACAACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTTTTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAAGGGGTGAATGAT
GTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTATGTTACTGTTTATTTTTGCGGTATATGCTTCTCACTTTATTGTTAGTATGTGTCATGAAGCAATGTTATGAATGGACCAGTAATGTGTGACTAAGAAAAT
>TRINITY_DN104209_c0_g1_i7 from sample A4 / Example unspliced isoform:CCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGCGTGAGTAACAGAGGAGGAGGAGGTGCAGGTGCAGGGTTTGAATGTCGGAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCT
TCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATAC
TGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATgtgag
ttttcatgtaatgtatttaattccctggtaaatttaaaaatgcttgcatgcctatttgttcacatttcaattttctgcattatcatgtatttttgcacgtttatgattctgaattcccctggatcaagcatctggacagtatgcacatttgaatcatgtccactgtgaatacccttttgcattgtttacttctttaccag
ggaaatattgtctgtagttactaagtgctgacaactgaattcttacatgctagactataacttattctatcagtcacaatttccttgaatacatatgtgtaacaattgccctcaatttctcgagttcagaaactggcagcagtgtttaactctctgtttttttcagTTGCAGTTCATTTGGATC
Intron 2 GTCTACTTTT ... TGTTTGTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.54 | 83 | 6 | 64 |
| A2 | 40 | 45 | 0 | 30 |
| A3 | 42.86 | 72 | 4 | 54 |
| A4 | 40.98 | 72 | 0 | 50 |
| A5 | 39.22 | 31 | 2 | 20 |
| A6 | 36.36 | 7 | 0 | 4 |
| A7 | 46.38 | 37 | 0 | 32 |
| A8 | 33.33 | 6 | 0 | 3 |
| A9 | 34.72 | 47 | 0 | 25 |
| A10 | 43.4 | 30 | 0 | 23 |
>TRINITY_DN117465_c0_g1_i5 from sample A1 / Example spliced isoformCCGATTCATAAACCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGGTGCAGGGTTTGAATGTCGGAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCTTCTCCAGAAGATCCATT
CGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGTGTAAAGCATGAATTGCATTTCTTTAGCATCTGGATATTGGTGTTAAGCCTGACTTGTCGATTTTAAGGTGCTCAAGAAAACTAGCAA
AGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAA
GCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATTTGCAGTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGCTGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGAAAATCTG
CCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGAGAAGGTAGCGGGCGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCAGTTCCACGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAATGAGAAA
ATGGAGGGGAGAAAACTCACCTGATATAGTTTGTATCCAACCTCTCAAGACACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAAAAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTCACTGATT
CTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAAATAGAGAAATAAATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCAAAAAGATACTCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGCACATTGT
GCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGAGCCATTTCAACATTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTCTCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGG
ACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGATGTGCAATTTGACACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGAGTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGC
TAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGCCTTCAAGAATTTCAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTTTGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATA
TCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGAAGATTGAATTTTGGTGGTGTTTCTCAATCACCAGACCTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATTTGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCTGGGGATAAAGGTGC
ATCTGAAGATGTAAGTAAACCATCCTTTGAAAACAGAGATGAAGAGGCACCCAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAATATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCC
TTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTGCATCTGTAGATGCATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGACAACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTT
TTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAAGGGGTGAATGATGTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTAGAAATGGTGAGAAGTGATGCAGACCTCTCAAATGAAATTGTCTTGAGCCTGGAAAGGAGCACTCCAGTGAGCAGTACTGGACC
AACCAATTGCAATGCAGTTGTATCAGAACATCCTGTGAAAGATGTTCCTGGTTCTGTATTAGGGCAGCAAGCTGAAGAATCTCCAGTAACATTTCACAGAAGTAATGCCAAAAAGGCGAAAAGGAAATCCAAAAATAATACAACTACAAGTAATTGTGATGTTCATGAGGGAGGTCAAATTGTATCCAAGAGAACTGCAG
ATAACAGAAAGAGCAAGAACAAATCTGAATATCAGCGCCGACAAAGTCTTTCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGGCGGAGTACAAGGATAAGATCAAGACCTCTAGAGTATTGGAGAGGTGAAAGGTTCTTATATGGTCGTATACACAATAGTCTGGCAACAGTGATTGGAATCAAATATTCTTCTCCG
CTTCCTGCAAGGTCTAAAAGAGATGAAGTTCCAAAACTGAAGGTTCAATCATATGTAGATGAACAATATTCTCACTTGGTGGAATTCGCAGCATTGCACTGACATTATTCTATCCATTTATATCATATTTGGAAGGCGGCCGGTATTCTAATGATTGACAGTTTGTCTATTATTTATCTGATCTAATGGCCTCATATGGT
CTGTCAAGATCAGTGCTTGAATGCTTCTCATTTAAATGTATGTTTTTTAATCAGTTCTATGCTTAGATCAATGCTCTCTTCTGTCACATTGTGTAAAATCTCGAGGATCTTATAAACATGCAAAGTTGCAGTGATGGTGTTATTATATAACATTTATGAATTGGAAGCCTAACCAAGGTTAAACTCTGGCCAAACCCTCT
ATGGCCTGTATGTAATACTTATTGAAAATGAGTTTCTATCTTACTGTGAATTGTGAATTTTTTTGATGGGC
>TRINITY_DN117465_c0_g1_i2 from sample A1 / Example unspliced isoform:CACCCAGTCTCTAATGTGGTAGTTAACTCAATTAACTGTGTTAATGCAACACATGTTTTCATGGATTTTTGAACATGGGTTGAGTACTTAGAGTGATTTGATTTAACCACTTGACTACAACCTGCTCGATGTAGTGAAAATAACATAGTTCATTTCAGGATGCATTTTATTTTTTATTATTTGGGATCAGTTTTAACTTA
GAAAAAGATGATTCTATATCCCTGGGTATGCTTGCTGCAATTCCATCATCTCTCTTTTGTTTGGTCATGCATTACCTAATAATGCTGCAAGGCTTCTAGTGGTTTTTTGAAAAACATTTGGAATACCATTGTAAGACATGAATTTGCATAAGAGTTGAACCAGACTTTTTGTGTGCATGGCTGCAGCTTGAAAGTTGCCA
CAATCAAACAAGAAAAAAGGTGTTAAATTGGTACTTGCATTTGTGTAAATAATGAATTTGCATGTTGTACACTAATTTATGGTTTGTGTGTGTTCCAGTGTAAAGCATGAATTGCATTTCTTTAGCATCTGGATATTGGTGTTAAGCCTGACTTGTCGATTTTAAGgtctactttttaaattttattaacttttatttta
tttttctatatttcatgatcgagacacatttggaatttgtgtttgttagGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGC
TACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAAT
Intron 3 GTTTGATTGA ... AAAATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.58 | 123 | 0 | 21 |
| A2 | 18.35 | 89 | 0 | 20 |
| A3 | 13.56 | 102 | 0 | 16 |
| A4 | 14.1 | 67 | 0 | 11 |
| A5 | 16.67 | 25 | 0 | 5 |
| A6 | 11.11 | 16 | 0 | 2 |
| A7 | 16.55 | 121 | 0 | 24 |
| A8 | 15.63 | 54 | 0 | 10 |
| A9 | 14.58 | 82 | 0 | 14 |
| A10 | 11.9 | 111 | 0 | 15 |
>TRINITY_DN117465_c0_g1_i9 from sample A1 / Example spliced isoformCCGATTCATAAACCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGCGTGAGTAACAGAGGAGGAGGAGGTGCAGGTGCAGGGTTTGAATGTCGGAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAG
CCACTGCATTCTTCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGC
AAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTA
GTTCAATTTGCAGTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGCTGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGAAAATCTGCCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGA
GAAGGTAGCGGGCGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCAGTTCCACGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAATGAGAAAATGGAGGGGAGAAAACTCACCTGATATAGTTTGTATCCA
ACCTCTCAAGACACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAAAAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTCACTGATTCTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAA
ATAGAGAAATAAATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCAAAAAGATACTCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGCACATTGTGCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGA
GCCATTTCAACATTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTCTCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGGACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGA
TGTGCAATTTGACACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGAGTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGCTAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGC
CTTCAAGAATTTCAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTTTGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATATCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGA
AGATTGAATTTTGGTGGTGTTTCTCAATCACCAGACCTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATTTGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCTGGGGATAAAGGTGCATCTGAAGATGTAAGTAAACCATCCTTTGAAAACAGAGA
TGAAGAGGCACCCAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAATATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCCTTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTG
CATCTGTAGATGCATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGACAACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTTTTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAA
GGGGTGAATGATGTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTAGAAATGGTGAGAAGTGATGCAGACCTCTCAAATGAAATTGTCTTGAGCCTGGAAAGGAGCACTCCAGTGAGCAGTACTGGACCAACCAATTGCAATGCAGTTGTATCAGAACATCCTGTGAA
AGATGTTCCTGGTTCTGTATTAGGGCAGCAAGCTGAAGAATCTCCAGTAACATTTCACAGAAGTAATGCCAAAAAGGCGAAAAGGAAATCCAAAAATAATACAACTACAAGTAATTGTGATGTTCATGAGGGAGGTCAAATTGTATCCAAGAGAACTGCAGATAACAGAAAGAGCAAGAACAAATCTGAATATCAGCGCC
GACAAAGTCTTTCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGGCGGAGTACAAGGATAAGATCAAGACCTCTAGAGTATTGGAGAGGTGAAAGGTTCTTATATGGTCGTATACACAATAGTCTGGCAACAGTGATTGGAATCAAATATTCTTCTCCGCTTCCTGCAAGGTCTAAAAGAGATGAAGTTCCAAAACTG
AAGGTTCAATCATATGTAGATGAACAATATTCTCACTTGGTGGAATTCGCAGCATTGCACTGACATTATTCTATCCATTTATATCATATTTGGAAGGCGGCCGGTATTCTAATGATTGACAGTTTGTCTATTATTTATCTGATCTAATGGCCTCATATGGTCTGTCAAGATCAGTGCTTGAATGCTTCTCATTTAAATGT
ATGTTTTTTAATCAGTTCTATGCTTAGATCAATGCTCTCTTCTGTCACATTGTGTAAAATCTCGAGGATCTTATAAACATGCAAAGTTGCAGTGATGGTGTTATTATATAACATTTATGAATTGGAAGCCTAACCAAGGTTAAACTCTGGCCAAACCCTCTATGGCCTGTATGTAATACTTATTGAAAATGAGTTTCTAT
CTTACTGTGAATTGTGAATTTTTTTGATGGGC
>TRINITY_DN117465_c0_g1_i4 from sample A1 / Example unspliced isoform:CAAGATCCATTTCAAGGAAAAGgtttgattgagtattgtttcttctacaatttaacctgactatgcatcacaaagttatccaagagttttttttcctctcctacttttgtactgtaggtatatctctagttcatattttatctccacaaaaatacacctatgttatttaactcatttttcctcccttgaaaattgcagGA
GCCATTTCAACATTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTCTCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGGACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGA
TGTGCAATTTGACACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGAGTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGCTAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGC
CTTCAAGAATTTCAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTTTGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATATCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGA
AGATTGAATTTTGGTGGTGTTTCTCAATCACCAGACCTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATTTGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCTGGGGATAAAGGTGCATCTGAAGATGTAAGTAAACCATCCTTTGAAAACAGAGA
TGAAGAGGCACCCAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAATATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCCTTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTG
CATCTGTAGATGCATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGACAACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTTTTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAA
GGGGTGAATGATGTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTAGAAATGGTGAGAAGTGATGCAGACCTCTCAAATGAAATTGTCTTGAGCCTGGAAAGGAGCACTCCAGTGAGCAGTACTGGACCAACCAATTGCAATGCAGTTGTATCAGAACATCCTGTGAA
AGATGTTCCTGGTTCTGTATTAGGGCAGCAAGCTGAAGAATCTCCAGTAACATTTCACAGAAGTAATGCCAAAAAGGCGAAAAGGAAATCCAAAAATAATACAACTACAAGTAATTGTGATGTTCATGAGGGAGGTCAAATTGTATCCAAGAGAACTGCAGATAACAGAAAGAGCAAGAACAAATCTGAATATCAGCGCC
GACAAAGTCTTTCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGGCGGAGTACAAGGATAAGATCAAGACCTCTAGAGTATTGGAGAGGTGAAAGGTTCTTATATGGTCGTATACACAATAGTCTGGCAACAGTGATTGGAATCAAATATTCTTCTCCGCTTCCTGCAAGGTCTAAAAGAGATGAAGTTCCAAAACTG
AAGGTTCAATCATATGTAGATGAACAATATTCTCACTTGGTGGAATTCGCAGCATTGCACTGACATTATTCTATCCATTTATATCATATTTGGAAGGCGGCCGGTATTCTAATGATTGACAGTTTGTCTATTATTTATCTGATCTAATGGCCTCATATGGTCTGTCAAGATCAGTGCTTGAATGCTTCTCATTTAAATGT
ATGTTTTTTAATCAGTTCTATGCTTAGATCAATGCTCTCTTCTGTCACATTGTGTAAAATCTCGAGGATCTTATAAACATGCAAAGTTGCAGTGATGGTGTTATTATATAACATTTATGAATTGGAAGCCTAACCAAGGTTAAACTCTGGCCAAACCCTCTATGGCCTGTATGTAATACTTATTGAAAATGAGTTTCTAT
CTTACTGTGAATTGTGAATTTTTTTGATGGGC
Intron 4 GTGAGTTTTC ... GTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.09 | 97 | 20 | 1 |
| A2 | 20.62 | 77 | 20 | 0 |
| A3 | 27.97 | 103 | 40 | 2 |
| A4 | 25.53 | 70 | 24 | 2 |
| A5 | 18.18 | 27 | 6 | 0 |
| A6 | 50 | 2 | 2 | 0 |
| A7 | 24.39 | 62 | 20 | 0 |
| A8 | 34.48 | 19 | 10 | 0 |
| A9 | 12.5 | 35 | 5 | 1 |
| A10 | 15.49 | 60 | 11 | 0 |
>TRINITY_DN107536_c0_g1_i3 from sample A3 / Example spliced isoformAAACCTTGCAATAAAGAACGCCCTCAAAAGGGTTGAGTCGTTGACCGATTCATAAACCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGCGTGAGTAACAGAGGAGGAGGAGGTGCAGGTGCAGGGTTTGAATGTCGGA
GATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCTTCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGTGTAAAGCATGAATT
GCATTTCTTTAGCATCTGGATATTGGTGTTAAGCCTGACTTGTCGATTTTAAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCA
CAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATTTGCAGTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGC
TGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGAAAATCTGCCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGAGAAGGTAGTGGGCGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCA
GTTCCATGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAATGAGAAAATGGAGGGGAGAAAAATCACCTGATATAGTTTGTAGCCAACCTCTCAAGACACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAA
AAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTCACTGATTCTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAAATAGAGAAATAAATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCA
AAAAGATAATCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGCACATTGTGCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGAGCCATTTCAACATTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTC
TCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGGACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGATGTGCAATTTGACACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGA
GTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGCTAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGCCTTCAAGAATTTCAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTT
TGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATATCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGAAGATTGAATTTTGGTGGTGTTTCTCAATCACCAGACCTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATT
TGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCTGGGGATAAAGGTGCATCTGAAGATGCAAGTAAACCATCCTTTGAAAACAGAGATGAAGAGGCACCCAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAAT
ATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCCTTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTGCATCTGTAGATGCATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGAC
AACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTTTTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAAGGGGTGAATGATGTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTAGAAATGGTGA
GAAGTGATGCAGACCTCTCAAATGAAATTGTCTTGAGCCTGGAAAGGAGCACTCCAGTGAGCAGTACTGGACCAACCAATTGCAATGCAGTTGTATCAGAACATCCTGTGAAAGATGTTCCTGGTTCTGTATTAGGGCAGCAAGCTGAAGAATCTCCAGTAACATTTCACAGAAGTAATGCCAAAAAGGCGAAAAGGAAA
TCCAAAAATAATACAACTACAAGTAATTGTGATGTTCATGAGGGAGGTCAAATTGTATCCAAGAGAACTGCAGATAACAGAAAGAGCAAGAACAAATCTGAATATCAGCGCCGACAAAGTCTTTCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGGCGGAGTACAAGGATAAGATCAAGACCTCTAGAGTATTGGAG
AGGTGAAAGGTTCTTATATGGTCGTATACACAATAGTCTGGCAACAGTGATTGGAATCAAATATTCTTCTCCGCTTCCTGCAAGGTCTAAAAGAGATGAAGTTCCAAAACTGAAGGTTCAATCATATGTAGATGAACAATATTCTCACTTGGTGGAATTCGCAGCATTGCACTGACATTATTCTATCCATTTATATCATA
TTTGGAAGGCGGCCGGTATTCTAATGATCGACAGTTTGTCTATTATTTATCTGATCTAATGGCCTCATATGGTCTGTCAAGATCAGTGCTTGAATGCTTCTCATTTAAATGTATGTTTTTTAATCAGTTCTATGCTTAGATCAATGCTCTCTTCTGTCACATTGTGTAAAATCTCGAGGATCTTATAAACATGCAAAGTT
GCAGTGATGGTGTTATTATATAACATTTATGAATTGGAAGCCTAACCAAGGTTAAACTCTGGCCAAACCCTCTATGGCCTGTATGTAATACTTATTGAAAATGAGTTTCTATCTTACTGTGA
>TRINITY_DN107536_c0_g1_i11 from sample A3 / Example unspliced isoform:TGTAAAGCATGAATTGCATTTCTTTAGCATCTGGATATTGGTGTTAAGCCTGACTTGTCGATTTTAAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAAC
ATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATgtgagttttcatgtaatgtatttaattccctggtaaatttaaaaatgcttgcatgcctatttggtc
acatttcaattttctgcattatcatgtatttttgcacgtttatgattctgaattcccctggatcaagcatctggacagtatgcacatttgaatcatgtccactgtgaatacccttttgcattgtttacttctttaccagggaaatattgtctgtagttactacacttaaagaaaaatatctccaatagtccaaattttgg
cagaagtgctgacaactgaattcttacatgctagactataacttattctatcagtcacaatttccttgaatacatatgtgtaacaattgccctcaatttctcgagttcagaaactggcagcagtgtttaactctctgttttttcagTTGCAGTTCATTTGGA
Intron 5 GTAAGCACCT ... GGAGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.48 | 213 | 1 | 226 |
| A2 | 52.99 | 189 | 0 | 213 |
| A3 | 53.47 | 221 | 0 | 254 |
| A4 | 49.7 | 170 | 0 | 168 |
| A5 | 51.17 | 104 | 0 | 109 |
| A6 | 57.69 | 11 | 0 | 15 |
| A7 | 50.72 | 103 | 0 | 106 |
| A8 | 53.23 | 29 | 0 | 33 |
| A9 | 51.85 | 91 | 0 | 98 |
| A10 | 52.48 | 144 | 0 | 159 |
>TRINITY_DN117465_c0_g1_i5 from sample A1 / Example spliced isoformCCGATTCATAAACCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGGTGCAGGGTTTGAATGTCGGAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCTTCTCCAGAAGATCCATT
CGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGTGTAAAGCATGAATTGCATTTCTTTAGCATCTGGATATTGGTGTTAAGCCTGACTTGTCGATTTTAAGGTGCTCAAGAAAACTAGCAA
AGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAA
GCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATTTGCAGTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGCTGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGAAAATCTG
CCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGAGAAGGTAGCGGGCGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCAGTTCCACGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAATGAGAAA
ATGGAGGGGAGAAAACTCACCTGATATAGTTTGTATCCAACCTCTCAAGACACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAAAAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTCACTGATT
CTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAAATAGAGAAATAAATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCAAAAAGATACTCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGCACATTGT
GCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGAGCCATTTCAACATTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTCTCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGG
ACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGATGTGCAATTTGACACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGAGTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGC
TAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGCCTTCAAGAATTTCAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTTTGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATA
TCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGAAGATTGAATTTTGGTGGTGTTTCTCAATCACCAGACCTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATTTGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCTGGGGATAAAGGTGC
ATCTGAAGATGTAAGTAAACCATCCTTTGAAAACAGAGATGAAGAGGCACCCAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAATATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCC
TTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTGCATCTGTAGATGCATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGACAACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTT
TTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAAGGGGTGAATGATGTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTAGAAATGGTGAGAAGTGATGCAGACCTCTCAAATGAAATTGTCTTGAGCCTGGAAAGGAGCACTCCAGTGAGCAGTACTGGACC
AACCAATTGCAATGCAGTTGTATCAGAACATCCTGTGAAAGATGTTCCTGGTTCTGTATTAGGGCAGCAAGCTGAAGAATCTCCAGTAACATTTCACAGAAGTAATGCCAAAAAGGCGAAAAGGAAATCCAAAAATAATACAACTACAAGTAATTGTGATGTTCATGAGGGAGGTCAAATTGTATCCAAGAGAACTGCAG
ATAACAGAAAGAGCAAGAACAAATCTGAATATCAGCGCCGACAAAGTCTTTCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGGCGGAGTACAAGGATAAGATCAAGACCTCTAGAGTATTGGAGAGGTGAAAGGTTCTTATATGGTCGTATACACAATAGTCTGGCAACAGTGATTGGAATCAAATATTCTTCTCCG
CTTCCTGCAAGGTCTAAAAGAGATGAAGTTCCAAAACTGAAGGTTCAATCATATGTAGATGAACAATATTCTCACTTGGTGGAATTCGCAGCATTGCACTGACATTATTCTATCCATTTATATCATATTTGGAAGGCGGCCGGTATTCTAATGATTGACAGTTTGTCTATTATTTATCTGATCTAATGGCCTCATATGGT
CTGTCAAGATCAGTGCTTGAATGCTTCTCATTTAAATGTATGTTTTTTAATCAGTTCTATGCTTAGATCAATGCTCTCTTCTGTCACATTGTGTAAAATCTCGAGGATCTTATAAACATGCAAAGTTGCAGTGATGGTGTTATTATATAACATTTATGAATTGGAAGCCTAACCAAGGTTAAACTCTGGCCAAACCCTCT
ATGGCCTGTATGTAATACTTATTGAAAATGAGTTTCTATCTTACTGTGAATTGTGAATTTTTTTGATGGGC
>TRINITY_DN117465_c0_g1_i8 from sample A1 / Example unspliced isoform:CACAAAACCATGgtaagcaccttgttcgcaaatctctgacaaatgcatcttggattcaataaacagccatctctatataagctgctatagattcccacgtcgttttttttacgtttttgtgttattgtttttgtttttcaattggatgatagcgtgagtaacagaggaggaggaggtgcagGTGCAGGGTTTGAATGTCG
GAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCTTCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGGTGCTCAAGAAAA
CTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGT
ATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATTTGCAGTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGCTGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGA
AAATCTGCCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGAGAAGGTAGCGGGCGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCAGTTCCACGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAA
TGAGAAAATGGAGGGGAGAAAACTCACCTGATATAGTTTGTATCCAACCTCTCAAGACACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAAAAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTC
ACTGATTCTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAAATAGAGAAATAAATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCAAAAAGATACTCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGC
ACATTGTGCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGAGCCATTTCAACATTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTCTCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTA
GTTCTGGACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGATGTGCAATTTGACACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGAGTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCT
CAAAAGCTAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGCCTTCAAGAATTTCAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTTTGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTT
CTCCATATCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGAAGATTGAATTTTGGTGGTGTTTCTCAATCACCAGACCTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATTTGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCTGGGGATA
AAGGTGCATCTGAAGATGTAAGTAAACCATCCTTTGAAAACAGAGATGAAGAGGCACCCAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAATATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCA
GCTGCCCTTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTGCATCTGTAGATGCATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGACAACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGG
TGGTGTTTTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAAGGGGTGAATGATGTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTAGAAATGGTGAGAAGTGATGCAGACCTCTCAAATGAAATTGTCTTGAGCCTGGAAAGGAGCACTCCAGTGAGCAGTA
CTGGACCAACCAATTGCAATGCAGTTGTATCAGAACATCCTGTGAAAGATGTTCCTGGTTCTGTATTAGGGCAGCAAGCTGAAGAATCTCCAGTAACATTTCACAGAAGTAATGCCAAAAAGGCGAAAAGGAAATCCAAAAATAATACAACTACAAGTAATTGTGATGTTCATGAGGGAGGTCAAATTGTATCCAAGAGA
ACTGCAGATAACAGAAAGAGCAAGAACAAATCTGAATATCAGCGCCGACAAAGTCTTTCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGGCGGAGTACAAGGATAAGATCAAGACCTCTAGAGTATTGGAGAGGTGAAAGGTTCTTATATGGTCGTATACACAATAGTCTGGCAACAGTGATTGGAATCAAATATTC
TTCTCCGCTTCCTGCAAGGTCTAAAAGAGATGAAGTTCCAAAACTGAAGGTTCAATCATATGTAGATGAACAATATTCTCACTTGGTGGAATTCGCAGCATTGCACTGACATTATTCTATCCATTTATATCATATTTGGAAGGCGGCCGGTATTCTAATGATTGACAGTTTGTCTATTATTTATCTGATCTAATGGCCTC
ATATGGTCTGTCAAGATCAGTGCTTGAATGCTTCTCATTTAAATGTATGTTTTTTAATCAGTTCTATGCTTAGATCAATGCTCTCTTCTGTCACATTGTGTAAAATCTCGAGGATCTTATAAACATGCAAAGTTGCAGTGATGGTGTTATTATATAACATTTATGAATTGGAAGCCTAACCAAGGTTAAACTCTGGCCAA
ACCCTCTATGGCCTGTATGTAATACTTATTGAAAATGAGTTTCTATCTTACTGTGAATTGTGAATTTTTTTGATGGGC
Intron 6 GTGAGTTTTC ... GTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.09 | 97 | 20 | 1 |
| A2 | 20.62 | 77 | 20 | 0 |
| A3 | 27.97 | 103 | 40 | 2 |
| A4 | 25.53 | 70 | 24 | 2 |
| A5 | 18.18 | 27 | 6 | 0 |
| A6 | 50 | 2 | 2 | 0 |
| A7 | 24.39 | 62 | 20 | 0 |
| A8 | 34.48 | 19 | 10 | 0 |
| A9 | 12.5 | 35 | 5 | 1 |
| A10 | 15.49 | 60 | 11 | 0 |
>TRINITY_DN107536_c0_g1_i3 from sample A3 / Example spliced isoformAAACCTTGCAATAAAGAACGCCCTCAAAAGGGTTGAGTCGTTGACCGATTCATAAACCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGCGTGAGTAACAGAGGAGGAGGAGGTGCAGGTGCAGGGTTTGAATGTCGGA
GATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCTTCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGTGTAAAGCATGAATT
GCATTTCTTTAGCATCTGGATATTGGTGTTAAGCCTGACTTGTCGATTTTAAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCA
CAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATTTGCAGTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGC
TGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGAAAATCTGCCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGAGAAGGTAGTGGGCGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCA
GTTCCATGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAATGAGAAAATGGAGGGGAGAAAAATCACCTGATATAGTTTGTAGCCAACCTCTCAAGACACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAA
AAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTCACTGATTCTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAAATAGAGAAATAAATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCA
AAAAGATAATCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGCACATTGTGCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGAGCCATTTCAACATTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTC
TCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGGACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGATGTGCAATTTGACACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGA
GTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGCTAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGCCTTCAAGAATTTCAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTT
TGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATATCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGAAGATTGAATTTTGGTGGTGTTTCTCAATCACCAGACCTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATT
TGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCTGGGGATAAAGGTGCATCTGAAGATGCAAGTAAACCATCCTTTGAAAACAGAGATGAAGAGGCACCCAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAAT
ATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCCTTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTGCATCTGTAGATGCATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGAC
AACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTTTTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAAGGGGTGAATGATGTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTAGAAATGGTGA
GAAGTGATGCAGACCTCTCAAATGAAATTGTCTTGAGCCTGGAAAGGAGCACTCCAGTGAGCAGTACTGGACCAACCAATTGCAATGCAGTTGTATCAGAACATCCTGTGAAAGATGTTCCTGGTTCTGTATTAGGGCAGCAAGCTGAAGAATCTCCAGTAACATTTCACAGAAGTAATGCCAAAAAGGCGAAAAGGAAA
TCCAAAAATAATACAACTACAAGTAATTGTGATGTTCATGAGGGAGGTCAAATTGTATCCAAGAGAACTGCAGATAACAGAAAGAGCAAGAACAAATCTGAATATCAGCGCCGACAAAGTCTTTCAGGGGCAGGAACTTTATGGAAAAGCGGGGTAAGGCGGAGTACAAGGATAAGATCAAGACCTCTAGAGTATTGGAG
AGGTGAAAGGTTCTTATATGGTCGTATACACAATAGTCTGGCAACAGTGATTGGAATCAAATATTCTTCTCCGCTTCCTGCAAGGTCTAAAAGAGATGAAGTTCCAAAACTGAAGGTTCAATCATATGTAGATGAACAATATTCTCACTTGGTGGAATTCGCAGCATTGCACTGACATTATTCTATCCATTTATATCATA
TTTGGAAGGCGGCCGGTATTCTAATGATCGACAGTTTGTCTATTATTTATCTGATCTAATGGCCTCATATGGTCTGTCAAGATCAGTGCTTGAATGCTTCTCATTTAAATGTATGTTTTTTAATCAGTTCTATGCTTAGATCAATGCTCTCTTCTGTCACATTGTGTAAAATCTCGAGGATCTTATAAACATGCAAAGTT
GCAGTGATGGTGTTATTATATAACATTTATGAATTGGAAGCCTAACCAAGGTTAAACTCTGGCCAAACCCTCTATGGCCTGTATGTAATACTTATTGAAAATGAGTTTCTATCTTACTGTGA
>TRINITY_DN107536_c0_g1_i10 from sample A3 / Example unspliced isoform:TGTAAAGCATGAATTGCATTTCTTTAGCATCTGGATATTGGTGTTAAGCCTGACTTGTCGATTTTAAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATACTGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAAC
ATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATgtgagttttcatgtaatgtatttaattccctggtaaatttaaaaatgcttgcatgcctatttggtc
acatttcaattttctgcattatcatgtatttttgcacgtttatgattctgaattcccctggatcaagcatctggacagtatgcacatttgaatcatgtccactgtgaatacccttttgcattgtttacttctttaccagggaaatattgtctgtagttactaagtgctgacaactgaattcttacatgctagactataac
ttattctatcagtcacaatttccttgaatacatatgtgtaacaattgccctcaatttctcgagttcagaaactggcagcagtgtttaactctctgttttttcagTTGCAGTTCATTTGGA
Intron 7 GTGAGTTTTC ... TTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.09 | 97 | 20 | 1 |
| A2 | 20.62 | 77 | 20 | 0 |
| A3 | 27.97 | 103 | 40 | 2 |
| A4 | 25.53 | 70 | 24 | 2 |
| A5 | 18.18 | 27 | 6 | 0 |
| A6 | 50 | 2 | 2 | 0 |
| A7 | 24.39 | 62 | 20 | 0 |
| A8 | 34.48 | 19 | 10 | 0 |
| A9 | 12.5 | 35 | 5 | 1 |
| A10 | 15.49 | 60 | 11 | 0 |
>TRINITY_DN104209_c0_g1_i8 from sample A4 / Example spliced isoformCCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGCGTGAGTAACAGAGGAGGAGGAGGTGCAGGTGCAGGGTTTGAATGTCGGAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCT
TCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATAC
TGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATTTGCA
GTTCATTTGGATCAAATTTGAATTTACAGAGAGATCCCAAAACCTTGAAGGATATGGATGAATTTTATGCTGCTGCTGAACCTCAGAGTAAGATTTCTGAAAACATGGAAGAAATTGCACAATTACCTGCATTATCTAAAGAAAATCTGCCACCCAAAGAATATTGTCCAAATCGGCAGACAAGGCGAGAAGGTAGCGGG
CGTGTATCTACACGGCGGCCTTTCAATATTATTTCAACTTCATTTGGATCAAATTTGAATTCACAGAGTGATCCCAGTTCCATGGGAAACGTGGAAGAATTTTTTGCAGCTTTTGATCGTCAGGAGACTGCAGAGAGAATAATGAGAAAATGGAGGGGAGAAAAATCACCTGATATAGTTTGTAGCCAACCTCTCAAGAC
ACGTGTCAGGCGACAAGGGACGGGCAGGAAAGCAATGCCCAGGAAATATGATTTGAAGCTGCTCGGTGACACTGAAAAATTTATGGAATTAGATGAAGAAAAACTGGAGATAGAGGAGGAAGAACACCCAGTGTCTACTTTCACTGATTCTGAAGGACAGGCTTGTGAAAGAATAATTGAAGCTGAAAATAGAGAAATAA
ATAATGGTGTATTGCTTAAAGAGTCAGGACAAAAAGAATCTCTTCTTGAGACTGTTATTGATAAATTGCAGTGCCAAAAAGATACTCAATTGGATAGCAACTCACAGAGTGCTATGCACGGATGTGATCAACATAGTAATGCACATTGTGCTGATGATCTCCATCAAGATCCATTTCAAGGAAAAGGAGCCATTTCAACA
TTTGAAACAGAAGAAACAGTCAACATGCCCCCCAAGAATTTGTTCGCATCTTTTGACAATTCGACAGGTAGTGCTCTCCAGAGGTTGTTAAACAACTATATAAGAGCAGATTCAGAGAACATACAGAAGGGGCCATTTTCTAGTTCTGGACTTGGGACTTATGAGATAGGAAAGCCATATCCAAAAGATGTGCAATTTGA
CACACTGAATACCTTGCCAGAATCCCAGACTGAGTCAAGTAACACTATCAATTCACAATCATTAAGCCTAGATGGAGTAAGAACTATGTTGCAGCTTGGGCAGTTGCCAAACAATTTTGCAGGTTCTGATAGAACGCCACCTCAAAAGCTAACAAAAACTGGCAGTCCATTAATGTCGCCAACTCCGCCTTCAAGAATTT
CAGCTACTCTCAGGTCAAGGAGGAAGCGCAGAAGTGGGGATAAAGTTGTATCTGAAGATGCAAGTAAATCATCCTTTGAAAATAGAGATGAAGAGGCACCCAAAGATGCCACTTCCTCACGCTCACCCCATTTGACAACTTTCTCCATATCAAACCCTTCAAAGGAAGTGGGGAGTGGTGGGGTAAGAAGATTGAATTTT
GGTGGTGTTTCTCAATCACCAGACTTTGTTGAAGTTAACAGCAAGGAAGGTGTCAATGATGTCACAGTCATGGATTTGGCGAATTCTACATCTCTTTCCAAACAATTTGGGGAGGATGACAAGGCAAGTAGTTCCGGGGATAAAGGTGCATCTGAAGATGCAAGTAAACCATCCTTTGAAAACAGAGATGAAGAGGCACC
CAAAGAAAAGACTATACGGCAGCTTGGGCACTTGCCAAAGAAATTTAAAAGGTCTGAAAAAACACCACCTGCGAATATTCAGCAGAAGCAAACAAATTCTGTCAGTCTATTAATGTCCCCAACTCCACCTTCAAGATTTTCAGCTGCCCTTGTGTCAAGGAAGAAGCACAGAAGTGTGCTTAAGGGTGCATCTGTAGATG
CATCTAAACCATCCTTGGAAAATAGAGATGAAGAGGCACTCAAAGATGCCACTTCCTCACCCTCACCTCGTTTGACAACACTTGCCATATCAAACCCTTCAACGCCAGGGGGGAGTGTTGGGGGAAGAAGATTGAGTGTTGGTGGTGTTTTGCAATCTCCAGACCTTGCTGAGGTTAACAGCAAGGAAGGGGTGAATGAT
GTCACGGCCATGGATTTGGCAAATTCTACATCTCCTTCCAAACAATTTCGGGAGGATGACAAGGTATGTTACTGTTTATTTTTGCGGTATATGCTTCTCACTTTATTGTTAGTATGTGTCATGAAGCAATGTTATGAATGGACCAGTAATGTGTGACTAAGAAAAT
>TRINITY_DN104209_c0_g1_i13 from sample A4 / Example unspliced isoform:CCGAAAAGTTGTAAAGGATTAAACCCTTATCCTAGCCAACGGGTAGCTATTTTTTCGAATTTTGACGAAGTTCCCGCCTATGCACAAAACCATGCGTGAGTAACAGAGGAGGAGGAGGTGCAGGTGCAGGGTTTGAATGTCGGAGATTTGAGATTTCCGTGACGGCAATGCCACAATTAGAAGCACAGCCACTGCATTCT
TCTCCAGAAGATCCATTCGAGCACGACAGTCTTTGTTCTTTGATGCCCAGTTCGTTCAAGGGTTTTATCAAGCAAGATTCAATTGATTCATTCAAAATTCAAGCCCTTCATCTTGCATTGAGACAGGAGGTGCTCAAGAAAACTAGCAAAGTCACTGAACAGGCAAATGCAATTTTAAGGAGCACAGCAAGGCCTGATAC
TGCAGAACATCACTGTGATTTAACTCAATATGACAAGCCCAAAAATCAACAGTCCGAGAACATGGAAGAAATTGCACAGCTACCTGCATTAATTAAGGAAAATCTGCCATCCAATGAAAATTGTCCGAATCAGCAGATAAGTATAGAAAGCAGTGGTCGTATGTCTACAAAGCCACCTTTCGATATTAGTTCAATgtgag
ttttcatgtaatgtatttaattccctggtaaatttaaaaatgcttgcatgcctatttgttcacatttcaattttctgcattatcatgtatttttgcacgtttatgattctgaattcccctggatcaagcatctggacagtatgcacatttgaatcatgtccactgtgaatacccttttgcattgtttacttctttaccag
ggaaatattgtctgtagttactacacttaaagaaaaatatctccaatagtccaaattttggcagaagtgctgacaactgaattcttacatgctagactataacttattctatcagtcacaatttccttgaatacatatgtgtaacaattgccctcaatttctcgagttcagaaactggcagcagtgtttaactctctgtt
tttttcagTTGCAGTTCATTTGGATC