sp|P48534|APX1_PEA ----> L-ascorbate peroxidase, cytosolic
Intron 1 GTAAGTGGAC ... TGGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.41 | 39 | 10 | 2 |
| A2 | 10.26 | 35 | 4 | 0 |
| A3 | 2.63 | 37 | 1 | 1 |
| A4 | 25 | 36 | 12 | 1 |
| A5 | 6.67 | 14 | 1 | 0 |
| A6 | 0 | 174 | 0 | 0 |
| A7 | 0 | 148 | 0 | 0 |
| A8 | 0 | 124 | 0 | 0 |
| A9 | 0 | 153 | 0 | 0 |
| A10 | 0 | 160 | 0 | 0 |
>TRINITY_DN117007_c0_g2_i2 from sample A1 / Example spliced isoformCTGGTACGCATTTTCAACGTCCAATTTATGCCGTCGTAGATTATTCCGACCGGGCGATCGTAGCCACTCCTTGACTACGGCGTAACACAAGTTCAGGCCGTCAGATGTGGAATCCAACGGCCGAGAACGAGCTACTAGATTGTTCTGCTGACAGAGAACAGCATCCGGTAAAACCATCCTGGCGAACCTACCAGATTGCC
TCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCTCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCA
TTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATAC
GCCGATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGG
TGGCCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGGATG
AGGATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAACAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCA
GAAATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATCCCTCGCTGTTGTTGGTTAGAGTGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCATGTTGTT
TATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAGTGCCTTTTTCCTTTCATTTTACGATTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACA
GCTTTTGAGTGGGATATATGTCGATAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACACTTTTTCAATCACTGTTTGAGTAAATTAGTG
>TRINITY_DN117007_c0_g2_i3 from sample A1 / Example unspliced isoform:CTGGTACGCATTTTCAACGTCCAATTTATGCCGTCGTAGATTATTCCGACCGGGCGATCGTAGCCACTCCTTGACTACGGCGTAACACAAGTTCAGGCCGTCAGATGTGGAATCCAACGGCCGAGAACGAGCTACTAGATTGTTCTGCTGACAGAGAACAGCATCCGGTAAAACCATCCTGGCGAACCTACCAGATTGCC
TCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCTCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCA
TTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCGTGGGTTTTTGATAACCACTTAATTTTGTAAGGATTCTGTTTTGGTTGATTTGTTTTGGATCGAATTTAAAGGTCTTGTGAATTTGCTTCAGATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACC
AGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATACGCCGATTTCTATCAGGTACGTTTCAGGCACTATAACTTGTTTTCTTGGGGTTTTGGTAGTTAGGGTTTGGGGTTTGTGTAAAGTTTTCTGAGCATGGATTTTTTTTGG
TTTTCTGAACTGCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCgtaagtggaccggccgttgaacctcatccattttagtgcagattgtgtttgctgttaaccagccgattgtgtatgcttataaatattcctttttcatgccagatttggtgataattttc
ttctgaatggatgataaaattggatatattctctttttctggtgtgcagGATAAACCTGAGCCTCCAGAGGA
Intron 2 GTGGGTTTTT ... TTTGCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.41 | 48 | 11 | 20 |
| A2 | 14.85 | 43 | 10 | 5 |
| A3 | 17.44 | 71 | 24 | 6 |
| A4 | 38.36 | 49 | 25 | 36 |
| A5 | 27.82 | 48 | 23 | 14 |
| A6 | 17.88 | 225 | 57 | 41 |
| A7 | 17.95 | 192 | 55 | 29 |
| A8 | 14.94 | 131 | 25 | 21 |
| A9 | 15.13 | 202 | 55 | 17 |
| A10 | 18.81 | 218 | 66 | 35 |
>TRINITY_DN117007_c0_g2_i2 from sample A1 / Example spliced isoformCTGGTACGCATTTTCAACGTCCAATTTATGCCGTCGTAGATTATTCCGACCGGGCGATCGTAGCCACTCCTTGACTACGGCGTAACACAAGTTCAGGCCGTCAGATGTGGAATCCAACGGCCGAGAACGAGCTACTAGATTGTTCTGCTGACAGAGAACAGCATCCGGTAAAACCATCCTGGCGAACCTACCAGATTGCC
TCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCTCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCA
TTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATAC
GCCGATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGG
TGGCCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGGATG
AGGATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAACAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCA
GAAATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATCCCTCGCTGTTGTTGGTTAGAGTGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCATGTTGTT
TATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAGTGCCTTTTTCCTTTCATTTTACGATTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACA
GCTTTTGAGTGGGATATATGTCGATAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACACTTTTTCAATCACTGTTTGAGTAAATTAGTG
>TRINITY_DN117007_c0_g2_i3 from sample A1 / Example unspliced isoform:CTGGTACGCATTTTCAACGTCCAATTTATGCCGTCGTAGATTATTCCGACCGGGCGATCGTAGCCACTCCTTGACTACGGCGTAACACAAGTTCAGGCCGTCAGATGTGGAATCCAACGGCCGAGAACGAGCTACTAGATTGTTCTGCTGACAGAGAACAGCATCCGGTAAAACCATCCTGGCGAACCTACCAGATTGCC
TCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCTCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCA
TTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCgtgggtttttgataaccacttaattttgtaaggattctgttttggttgatttgttttggatcgaatttaaaggtcttgtgaatttgcttcagATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACC
AGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATACGCCGATTTCTATCAGGTACGTTTCAGGCACTATAACTTGTTTTCTTGGGGTTTTGGTAGTTAGGGTTTGGGGTTTGTGTAAAGTTTTCTGAGCATGGATTTTTTTTGG
TTTTCTGAACTGCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGTAAGTGGACCGGCCGTTGAACCTCATCCATTTTAGTGCAGATTGTGTTTGCTGTTAACCAGCCGATTGTGTATGCTTATAAATATTCCTTTTTCATGCCAGATTTGGTGATAATTTTC
TTCTGAATGGATGATAAAATTGGATATATTCTCTTTTTCTGGTGTGCAGGATAAACCTGAGCCTCCAGAGGA
Intron 3 GTAAGTGGAC ... TGGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.82 | 39 | 8.5 | 3 |
| A2 | 14.43 | 35 | 6 | 0 |
| A3 | 10.21 | 37 | 4.5 | 2 |
| A4 | 27.2 | 36 | 13.5 | 7.5 |
| A5 | 16.49 | 14 | 3 | 0 |
| A6 | 8.38 | 174 | 17.5 | 0 |
| A7 | 10.85 | 148 | 20.5 | 0 |
| A8 | 9.21 | 124 | 14 | 0 |
| A9 | 9.73 | 153 | 18.5 | 0 |
| A10 | 8.34 | 160 | 16 | 0 |
>TRINITY_DN102359_c4_g1_i4 from sample A4 / Example spliced isoformGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCGCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCATTG
CAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATACGCC
GATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGGTGG
CCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGGATGAGG
ATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAAGAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCAGAA
ATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATGCCTCGCTGTTGTTGGTTAGAGAGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCGTGTTGTTTAT
GTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAATGCCTTTTTCCTTTCATTTTACGAGTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACAGCC
TTTGAGTGGGATATATGTCGAGAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACACTTTTTCAATCACTGTTTGAGTAAATTAGTGCAGTTTGTATTTTTCCCTTCTTTTTAGTGGACTGCATAA
TAACTATTTATTAACACAGAATTCCAATACCATTATAGCTCAATAAAGAAATACTTTGTTTGTGATATATATATATATATAATCAACGGGATTAATATATATTTATGTGGTTATAATAAACAAATGGGTTAAATATACAATTTGAAACCCACCAGTATGGTTGATTCGGGG
>TRINITY_DN102359_c4_g1_i7 from sample A4 / Example unspliced isoform:GGTTTGGGGTTTGTGTAAGGTTTTCTGAGCATGGATTTTTTTTGGTTTTCTGAACTGCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCgtaagtggaccggccgttgaacctcatccattttagtgcagattgtgtttgctgttaaccagccgattgtgtat
gcggataaatattcctttttcatgccagatttggtgataattttcttctgaatggatgataaaattggatatattctcttttttctggtgtgcagGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGG
Intron 4 GTAGGTTTTT ... ACGCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.45 | 41 | 0.7 | 14 |
| A2 | 28.74 | 62 | 3.7 | 25 |
| A3 | 28.85 | 61.7 | 3 | 25 |
| A4 | 42.86 | 68 | 18.3 | 51 |
| A5 | 34.43 | 40 | 6 | 21 |
| A6 | 28.1 | 220 | 3.7 | 86 |
| A7 | 27.98 | 177.7 | 3.3 | 69 |
| A8 | 20.86 | 129 | 4 | 34 |
| A9 | 27.59 | 212.7 | 7 | 81 |
| A10 | 28.87 | 202 | 6.3 | 82 |
>TRINITY_DN107973_c0_g1_i2 from sample A2 / Example spliced isoformCGAACCTACCAGATTGCCTCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTCGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCGCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGA
GGAAGCTGCGGGGTCTCATTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAG
TTTCCTACGATTTCATACGCCGATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCGGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGA
TATTGTGGCGCTCTCTGGTGGCCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCG
AAAAGTATGCAGAGGATGAGGATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAACAGTCACGAGAGTTGATGTCGTGTAAAAGAT
ATCCTAATAGCAGTGTCAGAAATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATCCCTCGCTGTTGTTGGTTAGAGTGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGG
ATACTCAGTCGTGTTGTTTATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAGTGCCTTTTTCCTTTCATTTTACGATTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAG
GACTGAAATGTTTTTACAGCCTTTGAGTGGGATATATGTCGAGAACATACTAAAATAAAATATAAAAAATATATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTATCACTTTTTCAATCACTGTTTGAGTAAATTAGTGC
>TRINITY_DN107973_c0_g1_i1 from sample A2 / Example unspliced isoform:CGAACCTACCAGATTGCCTCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTCGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCGCGCTGGgtaggtttttcgaggcttaattgtcagtcccagtgtccattttgttctgatatcgatctattgcctctagatctcgtgtct
tcattaatttttgccaatgatgaggaattgacgcttgcagGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCATTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTA
TGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATACGCCGATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCGGACATTC
CTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGGTGGCCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCT
AATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGGATGAGGATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGC
GGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAACAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCAGAAATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATCCCT
CGCTGTTGTTGGTTAGAGTGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCGTGTTGTTTATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGG
TCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAGTGCCTTTTTCCTTTCATTTTACGATTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACAGCCTTTGAGTGGGATATATGTCGAGAACATACTAAAATAAAATATAAAAAATATATGTACA
AAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTATCACTTTTTCAATCACTGTTTGAGTAAATTAGTGC
Intron 5 GTAGGTTAAC ... CACTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.49 | 37 | 2 | 12 |
| A2 | 25 | 15 | 0 | 5 |
| A3 | 5.56 | 17 | 0 | 1 |
| A4 | 50 | 14 | 4.5 | 14 |
| A5 | 4.76 | 20 | 0 | 1 |
| A6 | 17.32 | 198 | 0.5 | 41.5 |
| A7 | 18.04 | 159 | 0 | 35 |
| A8 | 18.23 | 166 | 0 | 37 |
| A9 | 12.76 | 123 | 0.5 | 18 |
| A10 | 8.73 | 115 | 0 | 11 |
>TRINITY_DN117007_c0_g2_i2 from sample A1 / Example spliced isoformCTGGTACGCATTTTCAACGTCCAATTTATGCCGTCGTAGATTATTCCGACCGGGCGATCGTAGCCACTCCTTGACTACGGCGTAACACAAGTTCAGGCCGTCAGATGTGGAATCCAACGGCCGAGAACGAGCTACTAGATTGTTCTGCTGACAGAGAACAGCATCCGGTAAAACCATCCTGGCGAACCTACCAGATTGCC
TCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCTCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCA
TTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATAC
GCCGATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGG
TGGCCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGGATG
AGGATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAACAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCA
GAAATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATCCCTCGCTGTTGTTGGTTAGAGTGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCATGTTGTT
TATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAGTGCCTTTTTCCTTTCATTTTACGATTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACA
GCTTTTGAGTGGGATATATGTCGATAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACACTTTTTCAATCACTGTTTGAGTAAATTAGTG
>TRINITY_DN117007_c0_g2_i1 from sample A1 / Example unspliced isoform:TGAAGCTCTCTGAACTTGGgtaggttaacactattactttttttcttttatatgaccaaatcctttttggtcaaatgcaacgtgatattcatgtagtaaagtctgcatctctcacttttcagGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGC
AGAACAGCATCTGTAGAACAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCAGAAATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATCCCTCGCTGTTGTTGGTTAGAGTGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACA
TCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCATGTTGTTTATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAGTGCCTTTTTCCTTTCATTTTACGATTTGG
GAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACAGCTTTTGAGTGGGATATATGTCGATAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACA
CTTTTTCAATCACTGTTTGAGTAAATTAGTG
Intron 6 GTATGTGCTA ... TTGTAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.42 | 31 | 7 | 1 |
| A2 | 11.11 | 8 | 1 | 0 |
| A3 | 14.29 | 18 | 3 | 0 |
| A4 | 37.5 | 10 | 6 | 9 |
| A5 | 11.11 | 24 | 3 | 0 |
| A6 | 17.55 | 155 | 33 | 1 |
| A7 | 6.36 | 103 | 7 | 1 |
| A8 | 14.79 | 121 | 21 | 0 |
| A9 | 10.81 | 99 | 12 | 1 |
| A10 | 19.71 | 110 | 27 | 0 |
>TRINITY_DN102359_c4_g1_i4 from sample A4 / Example spliced isoformGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCGCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCATTG
CAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATACGCC
GATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGGTGG
CCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGGATGAGG
ATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAAGAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCAGAA
ATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATGCCTCGCTGTTGTTGGTTAGAGAGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCGTGTTGTTTAT
GTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAATGCCTTTTTCCTTTCATTTTACGAGTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACAGCC
TTTGAGTGGGATATATGTCGAGAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACACTTTTTCAATCACTGTTTGAGTAAATTAGTGCAGTTTGTATTTTTCCCTTCTTTTTAGTGGACTGCATAA
TAACTATTTATTAACACAGAATTCCAATACCATTATAGCTCAATAAAGAAATACTTTGTTTGTGATATATATATATATATAATCAACGGGATTAATATATATTTATGTGGTTATAATAAACAAATGGGTTAAATATACAATTTGAAACCCACCAGTATGGTTGATTCGGGG
>TRINITY_DN102359_c4_g1_i1 from sample A4 / Example unspliced isoform:GTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCGCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCATTG
CAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATACGCC
GATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGGTGG
CCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGgtatgtg
ctagtacgttttacatgtttgtaaattcaatttcgagtactgattgctagttttttagtgggagatgaaaaaccatgataaatcatagccattttgagtagtttgtcatgggtgatgatctgcctcaaatccttccttgatcctgtcttgttatggaatcgtggcaatctcattggaatgaactccactgtttgtaaaca
gGATGAGGATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTAGGTTAACACTATTACTTTTTTTCTTTTATATGACCAAATCCTTTTTGGTCAAATGCAACGTGATATTCATGTAGTAAAGTCTGCATCTCTCACTTTTCAGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTG
CATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAAGAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCAGAAATAGCCCTGGCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATGCCTCGCTGTTGTTGGTTAGAGAGTTGACTGTGTT
GATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCGTGTTGTTTATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCA
CAATTGGGGCAATGCCTTTTTCCTTTCATTTTACGAGTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACAGCCTTTGAGTGGGATATATGTCGAGAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAA
AAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACACTTTTTCAATCACTGTTTGAGTAAATTAGTGCAGTTTGTATTTTTCCCTTCTTTTTAGTGGACTGCATAATAACTATTTATTAACACAGAATTCCAATACCATTATAGCTCAATAAAGAAATACTTTGTTTGTGATATATATATATATATAATCAACGG
GATTAATATATATTTATGTGGTTATAATAAACAAATGGGTTAAATATACAATTTGAAACCCACCAGTATGGTTGATTCGGGG
Intron 7 GTACGTTTCA ... TGAACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.47 | 33 | 12.5 | 7.5 |
| A2 | 17.07 | 34 | 7 | 5.5 |
| A3 | 21.74 | 36 | 10 | 3.5 |
| A4 | 34.38 | 42 | 22 | 8 |
| A5 | 43.24 | 21 | 16 | 5 |
| A6 | 20.27 | 177 | 45 | 11 |
| A7 | 21.2 | 176.5 | 47.5 | 12.5 |
| A8 | 19.14 | 114 | 27 | 8 |
| A9 | 14.72 | 127.5 | 22 | 10 |
| A10 | 19.84 | 145.5 | 36 | 4.5 |
>TRINITY_DN117007_c0_g2_i2 from sample A1 / Example spliced isoformCTGGTACGCATTTTCAACGTCCAATTTATGCCGTCGTAGATTATTCCGACCGGGCGATCGTAGCCACTCCTTGACTACGGCGTAACACAAGTTCAGGCCGTCAGATGTGGAATCCAACGGCCGAGAACGAGCTACTAGATTGTTCTGCTGACAGAGAACAGCATCCGGTAAAACCATCCTGGCGAACCTACCAGATTGCC
TCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCTCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCA
TTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACCAGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATAC
GCCGATTTCTATCAGCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGATAAACCTGAGCCTCCAGAGGAGGGCCGTTTGCCTGATGCTACTAAAGGGGTTGATCATTTGAGGGATGTGTTTGGTCACATGGGCCTGAGTGACAAGGATATTGTGGCGCTCTCTGG
TGGCCACACCTTGGGTAGATGTCACAAGGAGCGATCTGGCTTTGAGGGAGCATGGACGTCTAATCCTCTGATATTTGACAATTCTTATTTCAAGGAACTTCTTAGTGGAGAGAAAGAAGGTTTGCTTCAGCTTCCTTCTGATAAGGCATTGTTGGAGGATCCGGTCTTCCGATCTTATGTCGAAAAGTATGCAGAGGATG
AGGATGCCTTCTTTGCTGATTATGCAGAAGCCCACCTGAAGCTCTCTGAACTTGGGTTTGCGGAGGAGGAGTAAAGACCGAACCTTGAATTGCATACAATGTTTATAAATCAAAAACCTAAGATGTCAACCGCAGAACAGCATCTGTAGAACAGTCACGAGAGTTGATGTCGTGTAAAAGATATCCTAATAGCAGTGTCA
GAAATACCCCTGCCAGTATGCATATTGTTCAGTTCAGTTTATTTCTATTTTGAATATCCCTCGCTGTTGTTGGTTAGAGTGTTGACTGTGTTGATGAGGGAGTGCTCTGTTTCTAATGCTGAGGGCTCTCACATCTCTGCTGTGTTGGTTCTGTCTGCCTTGCTACTGCACTATATGTTAGGATACTCAGTCATGTTGTT
TATGTTAGATTCAATGTGTTCTTGTGACTCCTACCATGCATTTTTCAATATCTTTCCAGGGTCATTCTGTACAAGATTTTATTGATCTCTCACAATTGGGGCAGTGCCTTTTTCCTTTCATTTTACGATTTGGGAAGCGAAGTTGACTAGGGATTTTAAGTCCATTTATCATTTACTGAGAGGACTGAAATGTTTTTACA
GCTTTTGAGTGGGATATATGTCGATAACATACTAAAATAAAATATAAAAAATAGATGTACAAAATATGATACTATATAATAATATTTAATAAAAAATAAAAATATCATGAAAACATTAAAACGAAATTTAACACTTTTTCAATCACTGTTTGAGTAAATTAGTG
>TRINITY_DN117007_c0_g2_i3 from sample A1 / Example unspliced isoform:CTGGTACGCATTTTCAACGTCCAATTTATGCCGTCGTAGATTATTCCGACCGGGCGATCGTAGCCACTCCTTGACTACGGCGTAACACAAGTTCAGGCCGTCAGATGTGGAATCCAACGGCCGAGAACGAGCTACTAGATTGTTCTGCTGACAGAGAACAGCATCCGGTAAAACCATCCTGGCGAACCTACCAGATTGCC
TCAGTTTGTTCAATAAAATCTGGTGAAGGAATTCGATCGCCACTAGGTATTTTGGAGTTGAGGAGTTTGAATCGCATCGGGTCGTGTTGGAATCTCGCTGGGATCTTGCAAAGAGGTCGAGATGGGTAAGCACTATCCTACAGTAAGCGAAGAATACCAAAAATCCGTGGAAAAATGTAAGAGGAAGCTGCGGGGTCTCA
TTGCAGAGAAGAAATGCGCTCCGATCATGCTCCGTCTCGCGTGGGTTTTTGATAACCACTTAATTTTGTAAGGATTCTGTTTTGGTTGATTTGTTTTGGATCGAATTTAAAGGTCTTGTGAATTTGCTTCAGATGGCATTCGGCTGGAACTTATGATGTGAAGACTAAGACGGGAGGTCCTTTCGGAACTATCAGGCACC
AGGATGAGATTGCACACGGCGCCAACAGTGGTCTGGACATTGCCATCCGGCTGCTGGAACCCATCAAGGAGCAGTTTCCTACGATTTCATACGCCGATTTCTATCAGgtacgtttcaggcactataacttgttttcttggggttttggtagttagggtttggggtttgtgtaaagttttctgagcatggattttttttgg
ttttctgaactgcagCTCGCTGGTGTTGTGGCCATTGAAATTACTGGAGGGCCAGACATTCCTTTCCATCCAGGAAGACCCGTAAGTGGACCGGCCGTTGAACCTCATCCATTTTAGTGCAGATTGTGTTTGCTGTTAACCAGCCGATTGTGTATGCTTATAAATATTCCTTTTTCATGCCAGATTTGGTGATAATTTTC
TTCTGAATGGATGATAAAATTGGATATATTCTCTTTTTCTGGTGTGCAGGATAAACCTGAGCCTCCAGAGGA