NA ----> NA
Intron 1 GTAATAATCC ... GCAATGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.51 | 22 | 89 | 105 |
| A2 | 77.95 | 28 | 85 | 113 |
| A3 | 68.24 | 42 | 93.5 | 87 |
| A4 | 83.61 | 15 | 62 | 91 |
| A5 | 75.75 | 10 | 33.5 | 29 |
| A6 | 72.46 | 176 | 384 | 542 |
| A7 | 75.25 | 235 | 666 | 763 |
| A8 | 72.47 | 351 | 766 | 1082 |
| A9 | 74.77 | 289 | 822.5 | 890 |
| A10 | 73.34 | 219 | 527.5 | 677 |
>TRINITY_DN39644_c0_g1_i4 from sample A7 / Example spliced isoformCACTTCTATCAAACAACATAAAATAAAAATATCGCATAGCCTGTAATCTTAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTACTTGTACTACTCACCCCACATGGCCCTGAGAAAGTGCCTTCTCGAATAGAAGAGGTTCGTCACACATCACTGGAT
ATTTTGGGAGTTAAAAGAGTGAAAGAAGCCAAATCGAACTTGGACCATTGCAACGCCTAGTGCCAAATCGAACTTGGACCATTGCAACGCCTAGTGCCAAACGTGTTCCATTGCGTGGATTGAGAGCGAAGAGCTGTGTCTGTATCATATCGGACTACGAACGCCTGAAATTAATGGCCCATGCTTGCTTTCGAAGATAT
CGCATTCTTCCTCGGTGTTGTCAAATTGTGTTGTCCAATCCGATGGCTTTGACAGCTTGATGTTCGAATGACTGCCCAGCCGGCCATCATTCTGCGGGAATTTCAAGTTTATTTCAAAACTGTTTAGGAAGCAAACATGTCAAGACCCATGGCTTTGGGACTAGTGTTGATGATATTGATATTGACATCTCAGTCTGAAT
GGAAGCAACAATTGAAGAATGAGATAGAATCGTCTGGATCTTTTCACAAGAAGCAGCAACAGGTTTCAAACAAGCATGAACTTATCAAAGAGCAGATTATCTTGAATCAGGAAAAGAAGATACATCTACTTAAAGATCTTGTAAAGACCCTACAACAACAGATTATAGAATGCAAAAATGGCAGTGCAGGCTGTCGCAGA
TTTGTGTCATGAGATCCCATAAAACATTGAGGCTGCAGAAGAGTTTCTGATGAGCAAAAAGTGGTGGAATCATTATTTTATTTTTCATACACCAGAAACTTGCTGCCCCAGTGCAATTATTGGTGATTCTGTTCTTAAATTTAAAGCTCTGTTACCTCAAACCAGCTTGAAGCATTTGGTAGCTTCCTTAATGCATATTC
TAAAACAGATTTACTTGATGGCTTTGTATATTTCAAATTTACCAATTATTAAATTGCAGAAGACTACGTCCTCTGAACTAAAATTTGAAATGTGACCAAGTTCCAGATGTTATTCTTTTTGCATTATAGTACCATTTTCTGTTACATATAAACAGAGATTTGAAATTCTTCGTTAAGCTAGGCCTAACAGGTATATATTA
TGCATAGCTTTCATATCTTCTAGATTAATAAAGTCATTTTCATATCTAAAAAA
>TRINITY_DN39644_c0_g1_i2 from sample A7 / Example unspliced isoform:CACTTCTATCAAACAACATAAAATAAAAATATCGCATAGCCTGTAATCTTAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTACTTGTACTACTCACCCCACATGGCCCTGAGAAAGTGCCTTCTCGAATAGAAGAGGTTCGTCACACATCACTGGAT
ATTTTGGGAGTTAAAAGAGTGAAAGAAGCCAAATCGAACTTGGACCATTGCAACGCCTAGTGCCAAATCGAACTTGGACCATTGCAACGCCTAGTGCCAAACGTGTTCCATTGCGTGGATTGAGAGCGAAGAGCTGTGTCTGTATCATATCGGACTACGAACGCCTGAAATTAATGGCCCATGCTTGCTTTCGAAGATAT
CGCATTCTTCCTCGGTGTTGTCAAATTGTGTTGTCCAATCCGATGGCTTTGACAGCTTGATGTTCGAATGACTGCCCAGCCGGCCATCATTCTGCGGGAATTTCAAGTTTATTTCAAAACTGTTTAGGAAGCAAACATGTCAAGACCCATGGCTTTGGGACTAGTGTTGATGATATTGATATTGACATCTCAGTCTGAAT
GGAAGCAACAATTGAAGAATGAGATAGAATCGTCTGGATCTTTTCACAAGAAGCAGCAACAGGTTTCAAACAAGCATGAACTTATCAAAGAGCAGATTATCTTGAATCAGGAAAAGAAGATACATCTACTTAAAGATCTTGTAAAGACCCTACAACAACAGATTATAGAATGCAAAAATGGCAGTGCAGgtaataatcct
gtagaagctgtggctgtgaatactagtgagccccacaatcaagagggtccagaagactaacaattgaccttatatttgtaaaatgttcttggcaatggaagGCTGTCGCAGATTTGTGTCATGAGATCCCATAAAACATTGAGGCTGCAGAAGAGTTTCTGATGAGCAAAAAGTGGTGGAATCATTATTTTATTTTTCAT
ACACCAGAAACTTGCTGCCCCAGTGCAATTATTGGTGATTCTGTTCTTAAATTTAAAGCTCTGTTACCTCAAACCAGCTTGAAGCATTTGGTAGCTTCCTTAATGCATATTCTAAAACAGATTTACTTGATGGCTTTGTATATTTCAAATTTACCAATTATTAAATTGCAGAAGACTACGTCCTCTGAACTAAAATTTGA
AATGTGACCAAGTTCCAGATGTTATTCTTTTTGCATTATAGTACCATTTTCTGTTACATATAAACAGAGATTTGAAATTCTTCGTTAAGCTAGGCCTAACAGGTATATATTATGCATAGCTTTCATATCTTCTAGATTAATAAAGTCATTTTCATATCTAAAAAA
Intron 2 GTAGAGACTC ... CAAACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.57 | 125 | 40 | 17 |
| A2 | 22.52 | 129 | 50 | 25 |
| A3 | 21.69 | 130 | 38 | 34 |
| A4 | 22.03 | 69 | 24 | 15 |
| A5 | 26.13 | 41 | 16 | 13 |
| A6 | 21.89 | 437 | 129 | 116 |
| A7 | 20.45 | 809 | 197 | 219 |
| A8 | 19.16 | 844 | 181 | 219 |
| A9 | 20.67 | 967 | 203 | 301 |
| A10 | 18.41 | 729 | 150 | 179 |
>TRINITY_DN32051_c0_g1_i1 from sample A6 / Example spliced isoformGAAAAAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTACTTGTACTACTCACCCCACATGGCCCTGAGAAAGTGCCTTCTCGAATAGAAGAGGTTCGTCACACATCACTGGATATTTTGGGAGTTAAAAGAGTGAAAGAAGCCAAATCGAACTTGGAC
CATTGCAACGCCTAGTGCCAAACGTGTTCCATTGCGTGGATTGAGAGCGAAGAGCTGTGTCTGTATCATATCGGACTACGAACGCCTGAAATTAATGGCCCATGCTTGCTTTCGAAGATATCGCATTCTTCCTCGGTGTTGTCAAATTGTGTTGTCCAATCCGATGGCTTTGACAGCTTGATGTTCGAATGACTGCCCAG
CCGGCCATCATTCTGCGGGAATTTCAAGTTTATTTCAAAACTGTTTAGGAAGCAAACATGTCAAGACCCATGGCTTTGGGACTAGTGTTGATGATATTGATATTGACATCTCAGTCTGAATGGAAGCAACAATTGAAGAATGAGATAGAATCGTCTGGATCTTTTCACAAGAAGCAGCAACAGGTTTCAAACAAGCATGA
ACTTATCAAAGAGCAGATTATCTTGAATCAGGAAAAGAAGATACATCTACTTAAAGATCTTGTAAAGACCCTACAACAACAGATTATAGAATGCAAAAATGGCAGTGCAGGTAATAATCCTGTAGAAGCTGTGGCTGTGAATACTAGTGAGCCCCACAATCAAGAGGGTCCAGAAGACTAACAATTGACCTTATATTTGT
AAAATGTTCTTGGCAATGGAAGGCTGTCGCAGATTTGTGTCATGAGATCCCATAAAACATTGAGGCTGCAGAAGAGTTTCTGATGAGCAAAAAGTGGTGGAATCATTATTTTATTTTTCATACACCAGAAACTTGCTGCCCCAGTGCAATTATTGGTGATTCTGTTCTTAAATTTAAAGCTCTGTTATCTCAAACCAGCT
TGAAGCATTTGGTAGCTTCCTTAATGCATATTCTAAAACAGATTTACTTGATGGCTTTGTATATTTCAAATTTACCAATTATTAAATTGCAGAAGACTACGTCCTCTGAACTAAAATTTGAAATGTGACCAAGTTCCAGATGTTATTCTTTTTGCATTATAGTACCATTTTCTGTTACATATAAACAGAGATTTGAAATT
CTTCGTTAAGCTAGGCCTAACAGGTATATATTATGCATAGCTTTCATATCTTCTAGATTAATAAAG
>TRINITY_DN32051_c0_g1_i2 from sample A6 / Example unspliced isoform:GAAAAAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTCTCGGGAAAAAACTCTATGCTTATACTTACTTGTACTACTCACCCCACATGGCCCTGAGAAAGTGCCTTCTCGAATAGAAGAGGTTCGTCACACATCACTGGATATTTTGGGAGTTAAAAGAGTGAAAGAAGCCAAATCGAACTTGGAC
CATTGCAACGCCTAGTGCCAAACGTGTTCCATTGCGTGGATTGAGAGCGAAGAGCTGTGTCTGTATCATATCGGACTACGAACGCCTGAAATTAATGGCCCATGCTTGCTTTCGAAGATATCGCATTCTTCCTCGGTGTTGTCAAATTGTGTTGTCCAATCCGATGGCTTTGACAGCTTGATGTTCGAATGACTGCCCAG
CCGGCCATCATTCTGCGGGAATTTCAAGTTTATTTCAAAACTGTTTAGGAAGCAAACATGTCAAGACCCATGGCTTTGGGACTAGTGTTGATGATATTGATATTGACATCTCAGTCTGAATGGAAGCAACAATTGAAGAATGAGATAGAATCGTCTGGATCTTTTCACAAGAAGCAGCAACAGGTTTCAAACAAGCATGA
ACTTATCAAAGAGCAGgtagagactcttcttcaattgacagtttttataaagcaatttgcttactcacttgtcaaactgcagATTATCTTGAATCAGGAAAAGAAGATACATCTACTTAAAGATCTTGTAAAGACCCTACAACAACAGATTATAGAATGCAAAAATGGCAGTGCAGGTAATAATCCTGTAGAAGCTGTGG
CTGTGAATACTAGTGAGCCCCACAATCAAGAGGGTCCAGAAGACTAACAATTGACCTTATATTTGTAAAATGTTCTTGGCAATGGAAGGCTGTCGCAGATTTGTGTCATGAGATCCCATAAAACATTGAGGCTGCAGAAGAGTTTCTGATGAGCAAAAAGTGGTGGAATCATTATTTTATTTTTCATACACCAGAAACTT
GCTGCCCCAGTGCAATTATTGGTGATTCTGTTCTTAAATTTAAAGCTCTGTTATCTCAAACCAGCTTGAAGCATTTGGTAGCTTCCTTAATGCATATTCTAAAACAGATTTACTTGATGGCTTTGTATATTTCAAATTTACCAATTATTAAATTGCAGAAGACTACGTCCTCTGAACTAAAATTTGAAATGTGACCAAGT
TCCAGATGTTATTCTTTTTGCATTATAGTACCATTTTCTGTTACATATAAACAGAGATTTGAAATTCTTCGTTAAGCTAGGCCTAACAGGTATATATTATGCATAGCTTTCATATCTTCTAGATTAATAAAG