sp|Q9FXT6|PEX14_ARATH ----> Peroxisomal membrane protein PEX14
Intron 1 GTTTGATGAG ... TTTGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.3 | 29 | 10.3 | 18 |
| A2 | 33.33 | 20 | 4.7 | 10 |
| A3 | 40 | 18 | 3 | 12 |
| A4 | 30.43 | 16 | 2 | 7 |
| A5 | 50 | 7 | 1.7 | 7 |
| A6 | 23.91 | 70 | 10 | 22 |
| A7 | 23.78 | 125 | 10.3 | 39 |
| A8 | 25.34 | 218 | 19 | 74 |
| A9 | 24.67 | 113 | 12.3 | 37 |
| A10 | 21.51 | 73 | 2 | 20 |
>TRINITY_DN119895_c11_g1_i9 from sample A2 / Example spliced isoformGCACATACGATTTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGTTTGTACGAGACTTGC
AAAGGGGAACGCGAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACA
AAAGGAGAGCTTTCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCC
AGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAA
CTGCAACGGGTGCTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAA
CTGGTCAAATCGAGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTT
GGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTG
AGAAGCCTCCAGGGATTCAGGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGT
AATGGCTTCGCTACTATGCAAGCAAAATCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTC
TGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGG
AGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGAT
GCACAAGCATATTAAAGATGTATGTCAGAGGGAAGTAGCATTCCCACAAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATT
TGTATACTAATTTCTGCAATGTATTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTA
CCTTGGAAAGCAATATTTAGTTCGTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACC
>TRINITY_DN119895_c11_g1_i7 from sample A2 / Example unspliced isoform:ATTCATTTGCTTTTGATATTGTGAAAGAATATCGTTAGTTGCATTTCTACTTACAAACATTATTTGCACGTTACAGATGTGCAATCAGGGTGCATATTATAATCATTTAGAAATTAGAATGCTTGTGAGATAGAAATTTAGGCTGTGTTTTTCTTGTTTATTGACAGATGTATGTCAGAGGGAAGTAGCATTCCCACAAG
gtttgatgagtaaatacgctgttcttcatttgtgatgtatagtttgaaacattcatgaaatgctgaatgcttctggtgtttctttgatgcagGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCA
ATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTATTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTT
TCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTCGTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACC
Intron 2 GTTGGATTTT ... TATTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0.91 | 109 | 1 | 1 |
| A2 | 1.74 | 112.7 | 2 | 2 |
| A3 | 1.59 | 124 | 0 | 4 |
| A4 | 5.79 | 81.5 | 7 | 3 |
| A5 | 0 | 23.8 | 0 | 0 |
| A6 | 0.43 | 116.7 | 0 | 1 |
| A7 | 0 | 297.5 | 0 | 0 |
| A8 | 0 | 260.7 | 0 | 0 |
| A9 | 0 | 280.3 | 0 | 0 |
| A10 | 0 | 261.8 | 0 | 0 |
>TRINITY_DN106274_c0_g1_i9 from sample A4 / Example spliced isoformAGCCAACCTTGAACGGAAGCGCACATACGATTTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGT
TTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAG
GTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGAT
GAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGAT
TTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGG
TAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGG
GGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCAT
GGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCG
AGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAATCAACCACTGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCT
GACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTC
TGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGG
ATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGGTCCCACATAATTAATTTTTGTTACACTTTTGGTTCATTCTTTGAATTTGGTCAGAAATATTTCACTTATATTATTCTTTTGAGTTACGTGCTTTTAAATTTTTTTGCCACTCATGCAAATAAACTTGCAGCTGTTATATGCTACTCGAAATACCCAGTTTAT
ATTGATATTGTTTATTTCTTCCCCTTTCTGAGTTCTTGCA
>TRINITY_DN106274_c0_g1_i10 from sample A4 / Example unspliced isoform:AACTATGTATATGAATATAATTATTTCATTTTATATTTATCTGCTGGAAGACATATTAACGATTCCTTTGTTAAAATTGGTATCTTTTTTGTGCACAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGgttggattttctgtctcgtgtttgtctttagttctgtgttgctcactactgcaagtg
agttgcctgattgaattctttgcttagtcagcatacgtttatattatgcagGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGGTTAACAAATCATTATATTTGCATTTTGACCTCTGTTATTTTTATCACTTTTGCAACACAATTTAATCGAACTAGAGGTG
TACTCTGAGATTTGGACATTAGGATTTGCATGTCTTCTTGAATGCCCCATTTCATTTTAGGTTCATAAATGATTGCTCTCACTTCTTAGTTCTTTAACAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAA
AGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAATCAACCACTGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCT
TCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGA
TCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGG
AGACCGAAGATGCACAAGCATATTAAAGGTCCCACATAATTAATTTTTGTTACACTTTTGGTTCATTCTTTGAATTTGGTCAGAAATATTTCACTTATATTATTCTTTTGAGTTACGTGCTTTTAAATTTTTTTGCCACTCATGCAAATAAACTTGCAGCTGTTATATGCTACTCGAAATACCCAGTTTATATTGATATT
GTTTATTTCTTCCCCTTTCTGAGTTCTTGCA
Intron 3 GTCAGACATT ... TTGGTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.59 | 126 | 44 | 52 |
| A2 | 25.32 | 59 | 24 | 16 |
| A3 | 25.42 | 110 | 43 | 32 |
| A4 | 25.13 | 70 | 28 | 19 |
| A5 | 32.63 | 32 | 17 | 14 |
| A6 | 29.19 | 74 | 18 | 43 |
| A7 | 26.92 | 266 | 78 | 118 |
| A8 | 24.78 | 170 | 40 | 72 |
| A9 | 23.65 | 226 | 71 | 69 |
| A10 | 25.15 | 253 | 71 | 99 |
>TRINITY_DN108206_c2_g1_i7 from sample A5 / Example spliced isoformGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAA
CTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAA
GGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATG
AATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGC
ACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAAT
TGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGTATGTTTTTAGTTTGAAATTAGTTACGAGATAAAT
CAACCTTTTTTTTTATTCAAATTGGTTAGCAGGTTTGGAAAGCATTTTGCATGCTTGATATGTTTCGTTAATAATCCCACATGTTATATTTTTTCATCTTTGTCGATATCATTGTTATTGCTTGGATGACATAAAAAATTCATTAGTTTCTTATAATCTGGACATTGTATAGGGCTTTCTAAGTATTCACCAGAGTAAAC
TCAGACAAGTAATATTATCTTTCACTTCAGTTGTGAGATGAATTACTAGATGCTTTAAATAGGATATTGGGACTATGAAGTCTCTCTTGTATGCATCTTGAATCATTAATTTTCTCGTGTTTTAAGAAACATGCAAAATTTAGGGTCC
>TRINITY_DN108206_c2_g1_i4 from sample A5 / Example unspliced isoform:GCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAA
CTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAA
GGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATG
AATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGC
ACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAAT
TGAAGgtcagacattgatgctattttcttttgaacacgaagataagaaatatttccatttacctcgtctgtaaaagaagctaataatatgcagtctattgctttcttcaattcacctttggttagtatttggttccagATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCA
ATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGT
GCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGAC
CAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAATCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAA
TCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCC
ACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATG
ATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTA
AGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTATTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGA
TGTTATTGTTCATTGCCCCGCT
Intron 4 GTATGTTTTT ... ACATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.5 | 124 | 36 | 15.8 |
| A2 | 27.66 | 68 | 26 | 12.3 |
| A3 | 22.86 | 118.1 | 35 | 16.8 |
| A4 | 27.91 | 93 | 36 | 12.9 |
| A5 | 34.07 | 60 | 31 | 7.1 |
| A6 | 26.89 | 87 | 32 | 8.9 |
| A7 | 25.07 | 278 | 93 | 25 |
| A8 | 24.12 | 236 | 75 | 16.9 |
| A9 | 26.03 | 270 | 95 | 16 |
| A10 | 28.22 | 318 | 125 | 23.6 |
>TRINITY_DN116018_c0_g1_i9 from sample A1 / Example spliced isoformGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCAC
CAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGG
GTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGA
TAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGC
AAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAA
GTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGC
AAAATCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTC
CAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATG
CCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGATGTAT
GTCAGAGGGAAGTAGCATTCCCACAAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTA
TTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTC
GTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGTAAATGTAATATGTTATAATATAAATTTGCTTATATGTTCTGAAAATGAACAA
TTAGTTAACAAATTCTCTGAAATTATTTGAAATTCTTGCTAAATTAGTAAAGCTACAATGTAAGTTTGTTGGAGTATAATATAAGCTGTAATTAGTAAAGGGAGTCTGAGAACCTAACCGAATCAAGCAATTTCCTAATTTATAATATGAATATCATCATATTAGATTAGTCAGACTGAATCACATACTGGTTATTGGAA
TTCTTCTACTCTTTAAAGAAGGCTAACTATTTTCATTATGCTATGCTGTATATTGTCACCCGAGTTGCCTTTTTGATCCTTGTTAAATTTGAAATCCATCAACAATTTGATTAA
>TRINITY_DN116018_c0_g1_i1 from sample A1 / Example unspliced isoform:GGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCAC
CAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGG
GTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGA
TAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGgtatgtttttagtttgaaattagttacgagataaatcaacct
ttttttttattcaaattggttagcaggtttggaaagcattttgcatgcttgatatgtttcgttaataatcccacatgttatattttttcatctttgtcgatatcattgttattgcttggatgacataaaaaattcattagtttcttataatctggacattgtatagggctttctaagtattcaccagagtaaactcagac
aagtaatattatctttcacttcagttgtgagatgaattactagatgctttaaataggatattgggactatgaagtctctcttgtatgcattttgaatcattaattttctcgtgttttaagaaacatgcaaaatttagggtcaaattttatcctgatgcttgatacatcttctgcattcggtaaagatgttttttattact
atatttagagaaatatttgaaatttattttgaacggtcaaaatccttcaagtgggaagtgttgtgttaattaacatttgcagGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAAATTTCCAAGGTTAAGTTGTTTTGAATAGATGCTAGATGATATTTCT
ATGTAATGCGAGATATGTGTTATCTATAGTATAATGGTGGCATTTTTCCTCGTTACTCTTCGGTGTTGCTCTCCTGACCATGTTCTACTGTTCTTTCAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGGTGAGTCATAACATTCTGTATTAAACTTGGATTAATTTCATATGGTTCAAATTGG
TAGTTGTACATGCTTACTAATAAACTGTGATTCCCTTCATATCCTTTTTAAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTTTGTATTTAAATTCTAGTTTGGTGCATTATGTTTTTTGTTTTTTAACTGCAATTTTTATGTTCTTTTATATTTCTGAA
CTTTATCTAAAAGGAGCTACGTCATGCAATAGTTATCTTCAAACTTGACAAATAATATGGTCCTGACCATTGATTCACATGAGAGTCTGAATATACTGTTTGGTTGCATTAATTTTGGGATCCATGTCTCATATTATTTATCTTATTCATTATAGCATGTAAGTTAAGTGTGTAAGGTTATATCTTTATTTGGCATTCTT
AAAACATAAAAAATATGCGCATGCAC
Intron 5 GTTAAGTTGT ... GTTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.3 | 163.3 | 18.9 | 39.6 |
| A2 | 19.63 | 80.9 | 5.2 | 20.2 |
| A3 | 15.49 | 144.4 | 15.1 | 26.9 |
| A4 | 20.13 | 74.1 | 7.8 | 19.3 |
| A5 | 10.74 | 59.2 | 4 | 7.6 |
| A6 | 15.78 | 111.1 | 2.3 | 21.6 |
| A7 | 13.63 | 303.6 | 15 | 49.1 |
| A8 | 12.26 | 302.9 | 12 | 43.8 |
| A9 | 18.8 | 267.2 | 13 | 63.2 |
| A10 | 12.92 | 350.8 | 11.3 | 53.4 |
>TRINITY_DN109301_c6_g3_i10 from sample A3 / Example spliced isoformAAATTTTTGGAAATGTGCAGCCAACCTTGAACGGAAGCGCACATACGATTTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTG
CTCCTACATCTTCTTGGTTTGGTTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGT
CTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTA
ACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTT
TCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTG
CTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTT
GAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAA
ATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAA
ACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAATCAACCACTGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAG
ATAAATGGCGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAAC
TGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACA
AGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGGTCCCACATAATTAATTTTTGTTACACTTTTGGTTCATTCTTTGAATTTGGTCAGAAATATTTCACTTATATTATTCTTTTGAGTTACGTGCTTTTAAATTTTTTTGCCACTCATGCAAATAAACTTGCAGCTGTTATATGCTAC
TCGAAATACCCAGTTTATATTGATATTGTTTATTTCTTCCCCTTTCTGAGTTCTTGCATATATTTACTGGAATTGTTTGAAATTTGTCATCTTTCTAAAAGTGCTACTGATTACTAAAAAACCTGCTAGTCAGCGGATACATTGATATTTCTGGTTTCTTAGGATAATACTTGTTTTGTGTTGTGGAAATAGTGTTGGGA
TAATGAATTCACCTCATGTATACAGCATGAAATATTACACACCTGTGTAAGTGAGAGGTTTGACACATTTATGTAGTGGGTCTTAGAAGGGGCCTTACTATTGGTAGTTACAACTTTTGGTGCTTTGCAACTGGTGAGGGATGCCTGCACATGCTTGACATGTACAATGGAAAGCATTTTGAGAAATATTGGGATTAACC
AGTGGAAGGATATTTAGGATTTCCATTATCAAGATTAACTTGAGGAGAAAGAGATAGCTCAGAAACAAAGTGTAACAAACCTAAAATATATAAATATTAAATAATAATATTAATAATAATAATTAACAATAATTATCCAAGGGACATAACCCTTGTGAACAGTCATCAAAGGTGCCCTTTAGGATTGTATTTATACGGGC
CCTCTCTTTGCATTGTTATCATCTCATCATTTTACATTTAATATATATTTTCTATGTGGATTTATGTTCTCTGTCTTATTTATCTACAGTGGATTTTTTCATTAGACAAATCTTGTTCAT
>TRINITY_DN109301_c6_g3_i3 from sample A3 / Example unspliced isoform:TATGTTTTTAGTTTGAAATTAGTTACGAGATAAATCAACCTTTTTTTTTATTCAAATTGGTTAGCAGGTTTGGAAAGCATTTTGCATGCTTGATATGTTTCGTTAATAATCCCACATGTTATATTTTTTCATCTTTGTCGATATCATTGTTATTGCTTGGATGACATAAAAAATTCATTAGTTTCTTATAATCTGGACAT
TGTATAGGGCTTTCTAAGTATTCACCAGAGTAAACTCAGACAAGTAATATTATCTTTCACTTCAGTTGTGAGATGAATTACTAGATGCTTTAAATAGGATATTGGGACTATGAAGTCTCTCTTGTATGCATCTTGAATCATTAATTTTCTCGTGTTTTAAGAAACATGCAAAATTTAGGGTCAAATTTTATCCTGATGCT
TGATACATCTTCTGCATTCGGTAAAGATGTTTTTTATTACTATATTTAGAGAAATATTTGAAATTTATTTTGAACGGTCAAAATCCTTCAAGTGGGAAGTGTTGTGTTAATTAACATTTGCAGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCC
AAGgttaagttgttttgaatagatgctagatgatatttctatgtaatgcgagatatgtgttatctatagtataatggtggcatttttcctcgttactcttcggtgttgctctcctgaccatgttctactgttctttcagAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTG
CACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTTTGTATTTAAATTCTAGTTTGGTGCATTATGTTTTTTGTTTTTTAACTGCAATTTTTATGTTCTTTTATATTTCTGAACTTTATCTAAAAGGAGCTACGTCATGCAATAGTTATCTTCAAACTTGACAAATAATATGGTCCTGAC
CATTGATTCACATGAGAGTCTGAATATACTGTTTGGTTGCATTAATTTTGGGATCCATGTCTCATATTATTTATCTTATTCATTATAGCATGTAAGTTAAGTGTGTAAGGTTATATCTTTATTTGGCATTCTTAAAACATAAAAAATATGCGCATGCACTCTAAGTTTTCTTGATTGCTAAAGACTGAAGAACCAAACCA
ATCCACTGTAGAGGGTATCTTCATGATTGAGGTAATTAAAAATTGTACGATATTTCAAATTTTCAACACTAGTAGCTAATTGTTGGATTTTTATTACCTCAGATAGTGTATGTCAGAGTACCATTGATGTCAGCAGCGAGCAGAGGAGACCTGGGTGCACAGGTGTGCGGGTCCATGTAATGTCCCCAATTTGAAAATTT
TCCCAATTTAGTCAATTTTCG
Intron 6 GTCATGGCCA ... CATATTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.72 | 56.3 | 134 | 55 |
| A2 | 67.58 | 28.3 | 96 | 21.7 |
| A3 | 68.39 | 32 | 111 | 26.3 |
| A4 | 70.46 | 19 | 64 | 24 |
| A5 | 58.03 | 14 | 25 | 13.3 |
| A6 | 70.21 | 48.3 | 87 | 140 |
| A7 | 71.55 | 91.3 | 247 | 208 |
| A8 | 73.07 | 104.7 | 217 | 340.3 |
| A9 | 71.99 | 86 | 245 | 194.3 |
| A10 | 70.96 | 80.3 | 223 | 166.3 |
>TRINITY_DN39902_c0_g2_i1 from sample A6 / Example spliced isoformTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGTTTGTACGAGACTTGCAAAGGGGAACGC
GAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTT
TCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTC
TAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTG
CTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCG
AGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTC
ATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACA
CTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTATTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGA
ACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTCGTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAG
CTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGA
>TRINITY_DN39902_c0_g2_i3 from sample A6 / Example unspliced isoform:TTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGTTTGTACGAGACTTGCAAAGGGGAACGC
GAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTT
TCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTC
TAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTG
CTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCG
AGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTC
ATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGgtcatggccatggtagagcgaggtgagaagcctccag
ggattcaggaagtaaatgacaagcctccaaatccaaatcaacctccatccattcctagattacaagcaagaccaaagccctgggaagcagtccaagtacaaaacagcaacgacatacacagtgcacatgcgcagttcttgaaaactggaaactcctcagggctcagcgagggggcaaagcttgtgggtaatggcttcgct
actatgcaagcaaaatcaaccacagtatctgttagggcatctgacggtaccgactggcgacgaagagttgaatcagagtttaatcctgttaaaaatcagctgtctgagaacagtgtgagtataactgaaatggagtctggtgatgatgagataaatggcgccatgcctgacttatcttcaagcagttctgtctctggcac
agttgatggtccagttactaaacctttgcatagtttgagtggtagaacttgggtacctcctccaacacctccacttgcgatgcctcaagcagcagaagcaattcggcacccaaagtcaaaagtgaaacaggaagagttggaggctaaaactgaggcaccaaacagctctgtgtcagatctaaagcaggagtccactgatg
accaatttatgccacctgattctatgattcaacgggaggaagctcatgtgtcatcatcatctgaggtccatgatttcacagataacatcaaaggaatgaagggattttctacatttgctgacgaaaattcatacgagaaacctttgtacaaggaggttatgaaggaggatgccgaggagaccgaagatgcacaagcatat
taaagGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTATTAGATTCTTGATGCCCCAGCT
TATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTCGTTAATACTTGTCATCCTTTGT
TTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGA
Intron 7 GTATGAGCTC ... CGTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.52 | 7.2 | 40.8 | 23 |
| A2 | 90.09 | 2.2 | 17.3 | 22 |
| A3 | 85.53 | 5.6 | 34.3 | 29 |
| A4 | 70.94 | 7 | 17.4 | 15 |
| A5 | 70.93 | 2.6 | 10.7 | 0 |
| A6 | 77.49 | 35.3 | 137.6 | 96 |
| A7 | 79.31 | 42.4 | 187.7 | 125 |
| A8 | 74.34 | 108.9 | 360.4 | 259.3 |
| A9 | 77.19 | 56 | 207 | 163 |
| A10 | 65.46 | 46.8 | 103.7 | 67 |
>TRINITY_DN106274_c0_g1_i12 from sample A4 / Example spliced isoformAGCCAACCTTGAACGGAAGCGCACATACGATTTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGT
TTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAG
GTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGAT
GAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGAT
TTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGG
TAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGG
GGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCAT
GGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTCGTTAATACTTGTCATCCTTTGTTTA
GTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGC
>TRINITY_DN106274_c0_g1_i2 from sample A4 / Example unspliced isoform:AGCCAACCTTGAACGGAAGCGCACATACGATTTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGT
TTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAG
GTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGAT
GAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGAT
TTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGG
TAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGG
GGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCAT
GGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCG
AGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAATCAACCACTGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCT
GACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTC
TGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGG
ATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGATGTATGTCAGAGGGAAGTAGCATTCCCACAAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGgtatgagctctgaaacctaggtctcagtaaaccaataaaaatataggcctggggtt
ttcttgtataaatgataatttgtatactaatttctgcaatgtattagattcttgatgccccagcttatttgtttgtttgtagagtctaatgccctttatttatttgaacaatccttaatcataggttttcctattgatgttattgttcattgcccctgcttctatgcctttgcgtttttcagGACGCCTTGAGCATTCTG
TATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTCGTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGC
Intron 8 GTTAACAAAT ... TCTTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.01 | 173 | 4 | 38 |
| A2 | 8.96 | 122 | 0 | 12 |
| A3 | 16.26 | 149.3 | 2 | 29 |
| A4 | 11.03 | 121 | 4 | 15 |
| A5 | 19.44 | 29 | 0 | 7 |
| A6 | 16.59 | 171 | 2 | 34 |
| A7 | 11.55 | 406 | 1 | 53 |
| A8 | 14.56 | 352 | 0 | 60 |
| A9 | 12.6 | 340 | 5 | 49 |
| A10 | 11.81 | 321 | 0 | 43 |
>TRINITY_DN106274_c0_g1_i9 from sample A4 / Example spliced isoformAGCCAACCTTGAACGGAAGCGCACATACGATTTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGT
TTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAG
GTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGAT
GAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGAT
TTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGG
TAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGG
GGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCAT
GGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCG
AGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAATCAACCACTGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCT
GACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTC
TGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGG
ATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGGTCCCACATAATTAATTTTTGTTACACTTTTGGTTCATTCTTTGAATTTGGTCAGAAATATTTCACTTATATTATTCTTTTGAGTTACGTGCTTTTAAATTTTTTTGCCACTCATGCAAATAAACTTGCAGCTGTTATATGCTACTCGAAATACCCAGTTTAT
ATTGATATTGTTTATTTCTTCCCCTTTCTGAGTTCTTGCA
>TRINITY_DN106274_c0_g1_i10 from sample A4 / Example unspliced isoform:AACTATGTATATGAATATAATTATTTCATTTTATATTTATCTGCTGGAAGACATATTAACGATTCCTTTGTTAAAATTGGTATCTTTTTTGTGCACAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGTTGGATTTTCTGTCTCGTGTTTGTCTTTAGTTCTGTGTTGCTCACTACTGCAAGTG
AGTTGCCTGATTGAATTCTTTGCTTAGTCAGCATACGTTTATATTATGCAGGAAGTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGgttaacaaatcattatatttgcattttgacctctgttatttttatcacttttgcaacacaatttaatcgaactagaggtg
tactctgagatttggacattaggatttgcatgtcttcttgaatgccccatttcattttaggttcataaatgattgctctcacttcttagttctttaacagCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAA
AGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAATCAACCACTGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCT
TCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGA
TCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGG
AGACCGAAGATGCACAAGCATATTAAAGGTCCCACATAATTAATTTTTGTTACACTTTTGGTTCATTCTTTGAATTTGGTCAGAAATATTTCACTTATATTATTCTTTTGAGTTACGTGCTTTTAAATTTTTTTGCCACTCATGCAAATAAACTTGCAGCTGTTATATGCTACTCGAAATACCCAGTTTATATTGATATT
GTTTATTTCTTCCCCTTTCTGAGTTCTTGCA
Intron 9 GTCATGGCCA ... TTCCCACAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.27 | 51.5 | 134 | 25.8 |
| A2 | 78.86 | 25.8 | 96 | 19 |
| A3 | 78.27 | 31 | 111 | 15 |
| A4 | 75.12 | 21.3 | 64 | 14.8 |
| A5 | 62.95 | 14.8 | 25 | 6.3 |
| A6 | 68.8 | 40 | 87 | 63.8 |
| A7 | 76.1 | 78.5 | 247 | 112.8 |
| A8 | 72.59 | 84.8 | 217 | 197.3 |
| A9 | 75.65 | 79.5 | 245 | 103.3 |
| A10 | 73.77 | 79.8 | 223 | 65.8 |
>TRINITY_DN39902_c0_g2_i1 from sample A6 / Example spliced isoformTTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGTTTGTACGAGACTTGCAAAGGGGAACGC
GAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTT
TCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTC
TAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTG
CTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCG
AGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTC
ATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACA
CTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTATTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGA
ACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTCGTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAG
CTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGA
>TRINITY_DN39902_c0_g2_i5 from sample A6 / Example unspliced isoform:TTTTCGCCGGAGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGTTTGTACGAGACTTGCAAAGGGGAACGC
GAGAACTGAAGCTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTT
TCAAAGGAAAAGGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTC
TAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTG
CTGGCACCGGGGTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCG
AGAATTGAAGATAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTC
ATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGgtcatggccatggtagagcgaggtgagaagcctccag
ggattcaggaagtaaatgacaagcctccaaatccaaatcaacctccatccattcctagattacaagcaagaccaaagccctgggaagcagtccaagtacaaaacagcaacgacatacacagtgcacatgcgcagttcttgaaaactggaaactcctcagggctcagcgagggggcaaagcttgtgggtaatggcttcgct
actatgcaagcaaaatcaaccacagtatctgttagggcatctgacggtaccgactggcgacgaagagttgaatcagagtttaatcctgttaaaaatcagctgtctgagaacagtgtgagtataactgaaatggagtctggtgatgatgagataaatggcgccatgcctgacttatcttcaagcagttctgtctctggcac
agttgatggtccagttactaaacctttgcatagtttgagtggtagaacttgggtacctcctccaacacctccacttgcgatgcctcaagcagcagaagcaattcggcacccaaagtcaaaagtgaaacaggaagagttggaggctaaaactgaggcaccaaacagctctgtgtcagatctaaagcaggagtccactgatg
accaatttatgccacctgattctatgattcaacgggaggaagctcatgtgtcatcatcatctgaggtccatgatttcacagataacatcaaaggaatgaagggattttctacatttgctgacgaaaattcatacgagaaacctttgtacaaggaggttatgaaggaggatgccgaggagaccgaagatgcacaagcatat
taaagatgtatgtcagagggaagtagcattcccacaagGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATT
TCTGCAATGTATTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCA
ATATTTAGTTCGTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGA
Intron 10 GTAAGAAAGT ... TGCATTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.05 | 160 | 34.5 | 25.4 |
| A2 | 15.14 | 112 | 17.8 | 22 |
| A3 | 14.15 | 169 | 27.4 | 29.5 |
| A4 | 9.47 | 96 | 17.2 | 10.5 |
| A5 | 18.77 | 65 | 13.4 | 16.4 |
| A6 | 11.21 | 74 | 15.6 | 9.9 |
| A7 | 15.43 | 322 | 50.9 | 65.5 |
| A8 | 14.18 | 143 | 15.3 | 26.1 |
| A9 | 16.25 | 277 | 45.8 | 60.5 |
| A10 | 12.61 | 348 | 53.5 | 54.7 |
>TRINITY_DN116018_c0_g1_i9 from sample A1 / Example spliced isoformGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCAC
CAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGG
GTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGA
TAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGC
AAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAA
GTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGC
AAAATCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTC
CAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATG
CCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGATGTAT
GTCAGAGGGAAGTAGCATTCCCACAAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTA
TTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTC
GTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGTAAATGTAATATGTTATAATATAAATTTGCTTATATGTTCTGAAAATGAACAA
TTAGTTAACAAATTCTCTGAAATTATTTGAAATTCTTGCTAAATTAGTAAAGCTACAATGTAAGTTTGTTGGAGTATAATATAAGCTGTAATTAGTAAAGGGAGTCTGAGAACCTAACCGAATCAAGCAATTTCCTAATTTATAATATGAATATCATCATATTAGATTAGTCAGACTGAATCACATACTGGTTATTGGAA
TTCTTCTACTCTTTAAAGAAGGCTAACTATTTTCATTATGCTATGCTGTATATTGTCACCCGAGTTGCCTTTTTGATCCTTGTTAAATTTGAAATCCATCAACAATTTGATTAA
>TRINITY_DN116018_c0_g1_i2 from sample A1 / Example unspliced isoform:GGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAgtaagaaagttgtttgctttat
cttattcagcctattacaactacatctgattttatatgtcattaagctccagaacatattacattcctataggttcgaatcaacatgtctgttttggatgtagttggctaattgtttgctgtgcattctagGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGGTAAGCAAGTTTGCAAATTC
AAGTATTTTGGTGTTTCAAGTGTTGCACCTATATAATTCTAATTCAGTCTGATGTTGAAGCATCAGGAGAGTCTTGGTTACTATGGAATTGTTTGTCAATGAATATAAGTTATAGGGGAACGATTGTGTCTTGTTGGTAGGTAAAATTGGATATAGGAAGCTAAAGTTTTCATGGAATATTTTGAGATAGGTTGCTGACT
ATGCTGTGTATCATATTTTGCAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGGGTGT
TGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGATAGG
AAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGT
AGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAAGTAA
ATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAA
TCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGT
TACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCAC
CTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGGTCCCACATA
ATTAATTTTTGTTACACTTTTGGTTCATTCTTTGAATTTGGTCAGAAATATTTCACTTATATTATTCTTTTGAGTTACGTGCTTTTAAATTTTTTTGCCACTCATGCAAATAAACTTGCAGCTGTTATATGCTACTCGAAATACCCAGTTTATATTGATATTGTTTATTTCTTCCCCTTTCTGAGTTCTTGCATATATTT
ACTGGAATTGTTTGAAATTTGTCATCTTTCTAAAAGTGCTACTGAC
Intron 11 GTAAGCAAGT ... TATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.89 | 145 | 7 | 36 |
| A2 | 17.5 | 99 | 0 | 21 |
| A3 | 14.75 | 156 | 3 | 27 |
| A4 | 16.36 | 92 | 1 | 18 |
| A5 | 21.95 | 64 | 2 | 18 |
| A6 | 12.5 | 49 | 1 | 7 |
| A7 | 15.62 | 281 | 0 | 52 |
| A8 | 20 | 152 | 0 | 38 |
| A9 | 14.23 | 241 | 0 | 40 |
| A10 | 11.45 | 294 | 0 | 38 |
>TRINITY_DN116018_c0_g1_i9 from sample A1 / Example spliced isoformGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCAC
CAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGG
GTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGA
TAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGC
AAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAA
GTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGC
AAAATCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTC
CAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATG
CCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGATGTAT
GTCAGAGGGAAGTAGCATTCCCACAAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTA
TTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTC
GTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGTAAATGTAATATGTTATAATATAAATTTGCTTATATGTTCTGAAAATGAACAA
TTAGTTAACAAATTCTCTGAAATTATTTGAAATTCTTGCTAAATTAGTAAAGCTACAATGTAAGTTTGTTGGAGTATAATATAAGCTGTAATTAGTAAAGGGAGTCTGAGAACCTAACCGAATCAAGCAATTTCCTAATTTATAATATGAATATCATCATATTAGATTAGTCAGACTGAATCACATACTGGTTATTGGAA
TTCTTCTACTCTTTAAAGAAGGCTAACTATTTTCATTATGCTATGCTGTATATTGTCACCCGAGTTGCCTTTTTGATCCTTGTTAAATTTGAAATCCATCAACAATTTGATTAA
>TRINITY_DN116018_c0_g1_i2 from sample A1 / Example unspliced isoform:GGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGTAAGAAAGTTGTTTGCTTTAT
CTTATTCAGCCTATTACAACTACATCTGATTTTATATGTCATTAAGCTCCAGAACATATTACATTCCTATAGGTTCGAATCAACATGTCTGTTTTGGATGTAGTTGGCTAATTGTTTGCTGTGCATTCTAGGATCCTCCCTCTAATGAATCACCAGCTAAAACAACTGTTCAAAGTCAAGgtaagcaagtttgcaaattc
aagtattttggtgtttcaagtgttgcacctatataattctaattcagtctgatgttgaagcatcaggagagtcttggttactatggaattgtttgtcaatgaatataagttataggggaacgattgtgtcttgttggtaggtaaaattggatataggaagctaaagttttcatggaatattttgagataggttgctgact
atgctgtgtatcatattttgcagATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGGGTGT
TGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGATAGG
AAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGT
AGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAAGTAA
ATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGCAAAA
TCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTCCAGT
TACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATGCCAC
CTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGGTCCCACATA
ATTAATTTTTGTTACACTTTTGGTTCATTCTTTGAATTTGGTCAGAAATATTTCACTTATATTATTCTTTTGAGTTACGTGCTTTTAAATTTTTTTGCCACTCATGCAAATAAACTTGCAGCTGTTATATGCTACTCGAAATACCCAGTTTATATTGATATTGTTTATTTCTTCCCCTTTCTGAGTTCTTGCATATATTT
ACTGGAATTGTTTGAAATTTGTCATCTTTCTAAAAGTGCTACTGAC
Intron 12 GTGAGTCATA ... CCTTTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.89 | 172.8 | 6.4 | 23.8 |
| A2 | 12.32 | 95.9 | 0.7 | 14 |
| A3 | 11.26 | 140.5 | 3.4 | 18.4 |
| A4 | 9.45 | 76.9 | 2.1 | 8.1 |
| A5 | 5.01 | 50.9 | 0 | 2.7 |
| A6 | 5.04 | 113.9 | 0 | 6.2 |
| A7 | 7.2 | 299.5 | 1.4 | 24.1 |
| A8 | 7.29 | 303.6 | 0.7 | 24.8 |
| A9 | 9.98 | 268.8 | 0 | 31.3 |
| A10 | 5.12 | 323.6 | 0 | 17.9 |
>TRINITY_DN116018_c0_g1_i9 from sample A1 / Example spliced isoformGGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCAC
CAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGG
GTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGA
TAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGC
AAGTAGATTGGAGAGGCGTTTCTCAAAAAATTTCCAAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTCATGGCCATGGTAGAGCGAGGTGAGAAGCCTCCAGGGATTCAGGAA
GTAAATGACAAGCCTCCAAATCCAAATCAACCTCCATCCATTCCTAGATTACAAGCAAGACCAAAGCCCTGGGAAGCAGTCCAAGTACAAAACAGCAACGACATACACAGTGCACATGCGCAGTTCTTGAAAACTGGAAACTCCTCAGGGCTCAGCGAGGGGGCAAAGCTTGTGGGTAATGGCTTCGCTACTATGCAAGC
AAAATCAACCACAGTATCTGTTAGGGCATCTGACGGTACCGACTGGCGACGAAGAGTTGAATCAGAGTTTAATCCTGTTAAAAATCAGCTGTCTGAGAACAGTGTGAGTATAACTGAAATGGAGTCTGGTGATGATGAGATAAATGGAGCCATGCCTGACTTATCTTCAAGCAGTTCTGTCTCTGGCACAGTTGATGGTC
CAGTTACTAAACCTTTGCATAGTTTGAGTGGTAGAACTTGGGTACCTCCTCCAACACCTCCACTTGCGATGCCTCAAGCAGCAGAAGCAATTCGGCACCCAAAGTCAAAAGTGAAACAGGAAGAGTTGGAGGCTAAAACTGAGGCACCAAACAGCTCTGTGTCAGATCTAAAGCAGGAGTCCACTGATGACCAATTTATG
CCACCTGATTCTATGATTCAACGGGAGGAAGCTCATGTGTCATCATCATCTGAGGTCCATGATTTCACAGATAACATCAAAGGAATGAAGGGATTTTCTACATTTGCTGACGAAAATTCATACGAGAAACCTTTGTACAAGGAGGTTATGAAGGAGGATGCCGAGGAGACCGAAGATGCACAAGCATATTAAAGATGTAT
GTCAGAGGGAAGTAGCATTCCCACAAGGCAAACATAGGCAATGGCGAGTTATCAATGAGCAACACTTGACATCTAAGTAGTATTTATTAGTTTAAGTCATGGTATGAGCTCTGAAACCTAGGTCTCAGTAAACCAATAAAAATATAGGCCTGGGGTTTTCTTGTATAAATGATAATTTGTATACTAATTTCTGCAATGTA
TTAGATTCTTGATGCCCCAGCTTATTTGTTTGTTTGTAGAGTCTAATGCCCTTTATTTATTTGAACAATCCTTAATCATAGGTTTTCCTATTGATGTTATTGTTCATTGCCCCTGCTTCTATGCCTTTGCGTTTTTCAGGACGCCTTGAGCATTCTGTATCCAAGAAAAGCTCCTTACCTTGGAAAGCAATATTTAGTTC
GTTAATACTTGTCATCCTTTGTTTAGTGAGCAACCTTGGACATCGGTACAAGGTCATGAATAAGCTATATGCCTTATGGAATTTTAACATCTGAAACACTCACTGCTTGCTTGAAATTGGTTGGTAAATGTTTTGGAAATCAGTTGGTAAATGTAATATGTTATAATATAAATTTGCTTATATGTTCTGAAAATGAACAA
TTAGTTAACAAATTCTCTGAAATTATTTGAAATTCTTGCTAAATTAGTAAAGCTACAATGTAAGTTTGTTGGAGTATAATATAAGCTGTAATTAGTAAAGGGAGTCTGAGAACCTAACCGAATCAAGCAATTTCCTAATTTATAATATGAATATCATCATATTAGATTAGTCAGACTGAATCACATACTGGTTATTGGAA
TTCTTCTACTCTTTAAAGAAGGCTAACTATTTTCATTATGCTATGCTGTATATTGTCACCCGAGTTGCCTTTTTGATCCTTGTTAAATTTGAAATCCATCAACAATTTGATTAA
>TRINITY_DN116018_c0_g1_i1 from sample A1 / Example unspliced isoform:GGCCGATACTGTTGGTTAAATATGACGTCATCGCAGATCCGCTCGCTAACTATGGTTAACTTCGACCTGTTTATAACGAAAATAGAAAATACTATTAAGTGTGGCGTCTGAGATACTCTGGAGTATCGCTTATCCTCTGCTCCTACATCTTCTTGGTTTGGCTTGTACGAGACTTGCAAAGGGGAACGCGAGAACTGAAG
CTGGATGCTGTGAATTGGACATGAACTGACGTCTCTTATTTTGCGGCCGATAGGAGGAAGTCAGTGCGGGGAAATAAGATGGCAACAGAAAATTCTTTTCCCAGTCAAGCGGATGACAAAGTATTGAATACAGGTGAGTCTGGAAAAGCAGTGGAAGGTGAAGGGATTCCAGAAACAAAAGGAGAGCTTTCAAAGGAAAA
GGATGGTAACTGGCCATTCACAAATTCAGAGCCTATAAGAGAAGAACAGGTTCAAAATGCAGTCAAATTTTTATCTCATCCAAAAGTACGTGGTTCTCCAGTCATCTACCGACGCTCATTTCTTGAGAGGAAAGGTTTAACAAAGGAGGAGATTGATGAAGCTTTTCGGCGTGTGCCAGATCCTCCCTCTAATGAATCAC
CAGCTAAAACAACTGTTCAAAGTCAAGATGTGCAATCATCACCTCCTAGTGTCGTGCAAACTCTACCCCCAGTTCAAGCATTGCAGCATACAATGGCTCCAACAACACCAACGGCCCCATTGGTTAAGCCAACCCATTTTCACTGGACACATATGATTTTTGCTGTAGGGTTGCTAACTGCAACGGGTGCTGGCACCGGG
GTGTTGTTCAAGAATGCAGTTATACCAAAATTGAAAGCTTGGATACGACAAGTAATTTCTGAGGCTGATGAATCTGAACAGAAGAAGGCTCTAGAGCCAAGTCCAGCTACAGAAGCTGCGGCTGCAGCAAAAGCTGCTGCTATGGCAGCATCTGAGGTAGCTAATGTTAGCCGAGAACTGGTCAAATCGAGAATTGAAGA
TAGGAAATATTTTGAGGGCCTGGTGCGGTCTATAGAAGGACAAGTTGAAGAAATGAAGTCAATGAAGACTGCTGTTCAGTACATACAAAGTAACAGGCATGATTTACATACTGCAAATGGCATTTTGGATGATCCAGTTGAAACTGAGACACACAGGGGTATGTTTTTAGTTTGAAATTAGTTACGAGATAAATCAACCT
TTTTTTTTATTCAAATTGGTTAGCAGGTTTGGAAAGCATTTTGCATGCTTGATATGTTTCGTTAATAATCCCACATGTTATATTTTTTCATCTTTGTCGATATCATTGTTATTGCTTGGATGACATAAAAAATTCATTAGTTTCTTATAATCTGGACATTGTATAGGGCTTTCTAAGTATTCACCAGAGTAAACTCAGAC
AAGTAATATTATCTTTCACTTCAGTTGTGAGATGAATTACTAGATGCTTTAAATAGGATATTGGGACTATGAAGTCTCTCTTGTATGCATTTTGAATCATTAATTTTCTCGTGTTTTAAGAAACATGCAAAATTTAGGGTCAAATTTTATCCTGATGCTTGATACATCTTCTGCATTCGGTAAAGATGTTTTTTATTACT
ATATTTAGAGAAATATTTGAAATTTATTTTGAACGGTCAAAATCCTTCAAGTGGGAAGTGTTGTGTTAATTAACATTTGCAGGGAAAAATAATGGCACTTTGGGAGCCATTTCATCCATAAAGCAAGTAGATTGGAGAGGCGTTTCTCAAAAAAATTTCCAAGGTTAAGTTGTTTTGAATAGATGCTAGATGATATTTCT
ATGTAATGCGAGATATGTGTTATCTATAGTATAATGGTGGCATTTTTCCTCGTTACTCTTCGGTGTTGCTCTCCTGACCATGTTCTACTGTTCTTTCAGAATTCCAAAGTGGATTCTGATGTGCGAACTGTTGAGCAGGCATCAGgtgagtcataacattctgtattaaacttggattaatttcatatggttcaaattgg
tagttgtacatgcttactaataaactgtgattcccttcatatcctttttaagTGAGGCCTTCATCTGCACCTGCATCAGTTGAGCCCAGTCTTGCTCCGCATTCAAAATCATACATGGAGGTTTGTATTTAAATTCTAGTTTGGTGCATTATGTTTTTTGTTTTTTAACTGCAATTTTTATGTTCTTTTATATTTCTGAA
CTTTATCTAAAAGGAGCTACGTCATGCAATAGTTATCTTCAAACTTGACAAATAATATGGTCCTGACCATTGATTCACATGAGAGTCTGAATATACTGTTTGGTTGCATTAATTTTGGGATCCATGTCTCATATTATTTATCTTATTCATTATAGCATGTAAGTTAAGTGTGTAAGGTTATATCTTTATTTGGCATTCTT
AAAACATAAAAAATATGCGCATGCAC