sp|Q7XM16|C3H30_ORYSJ ----> Zinc finger CCCH domain-containing protein 30
Intron 1 GTAGGCCACT ... TTTTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.75 | 35 | 77 | 16 |
| A2 | 64 | 27 | 48 | 14 |
| A3 | 65.74 | 37 | 71 | 5 |
| A4 | 68.18 | 14 | 30 | 10 |
| A5 | 69.7 | 10 | 23 | 3 |
| A6 | 69.57 | 14 | 32 | 2 |
| A7 | 56.52 | 20 | 26 | 10 |
| A8 | 53.85 | 18 | 21 | 9 |
| A9 | 43.9 | 23 | 18 | 15 |
| A10 | 48.48 | 34 | 32 | 14 |
>TRINITY_DN48449_c0_g1_i15 from sample A10 / Example spliced isoformGGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCG
AACTTCAATGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAGTTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTAC
TGGCCATTGGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAATTAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATT
GCATTTTCTTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATATTCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCT
AGATTTTATCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATCAAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAG
AATGATTCAGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGT
AATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCA
TCGTCTATTCCACCAAGTCCCATAGAGCCACCCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCA
>TRINITY_DN48449_c0_g1_i27 from sample A10 / Example unspliced isoform:GGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAgtaggccactttcgatatcaaaccttttttttctttttttttcttt
ttctttttttttctggggtttcataataccagtcataggcttcaactggattgttttgcatcattggagcctctttttgtggagttgacggaacattctggcactgctggcatggagtcgctggaatgtcttcgcccacaatacctgaaatcgcaattcagaacaaatcatgacgaagggtttggatttggaattggaaa
tatgacaaatgtttttttttgttttttaatatgtaccttctttagaattgagacatgaattcgtcaagtagcagcggcaacctgcaaaaccagaaatttctatagcaattgtttgcaaattttctatggaatttaatggatttaaagatggttttgcttaccttcataagtagaggggacatagggactcaaacttgggt
gaacaccattgtttagagctttttacaggaggtgagattattacaacgatagccgcagcaacaactttttattagagaataaaaaacagttccctgccaagcagaaggaactctataaatggattctgcagcattggattaattttgcccattttacaatgaggcatatcggctgcaatttgaaatcaagtagacatctt
tttcactactcttcacgggtaaacatgctcaacaccaagtggcagacatgctcagcatcacttgacggctatgcagcaactctggacatgcaacaacttagaaggcggtggagacttgagcattgacattgaagctcaatatgcaagctcccttgctactacaaatgcacaccctgtgaacacactatcatccttttgtc
atgaggctattgtttattcagtggcggaaaaatttatgatatagaatggaatgccttcttttaagcagtagcctagaaacttcttcatatacaaccgagacatattagcccttgtatacctggttgcagtcgcaaaggtaacaagctctctcaagatgttttgcaagatcattttcgtgcatatgttattggtagccttg
cacaaatcataaaatattttgtatttttgtttatttattttcgtgcatatgttatttgtagccttgcacaaatcataaaatattttgtctttttgtttatttattttgattttgagcagGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCT
TGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAGTTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTC
AATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAATTAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGT
GCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATATTCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGA
TCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATCAAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTA
TTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAA
GCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGGTATGCGAACATAATTTCTTGCTCTTATATGGGGTCTTGCACTCTCACTCATATGTTCTGTTATGCAGAAATCAATGCTTGATCATGTGTAGAATAAAACATGCAAAGTGCATAAAGTACGTCAATGTCTATTTTGAATATT
TCTAGATGTATATCAACAATATTCTATGCTGTCATGTCGGTGTTTGTTTTTAATAAGGTCATTCGATTAGGGCTGGTCTTTAAAAATATTTTATTTGCCTTAGATATCTTGTCACTGAGCCTTTTTAAGATGTTTGTGTAGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTA
CATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGGTGGCTATATTTTTTATGTTCTTCGGCCTTCTACGTTTTTAGGTTAGATAGCTATGATGTCAAACGTTTTATGAGACTTGCAATGAATTACTTGCAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTG
ATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGT
CACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCAC
GATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATACGGAAGTGAAAAGCTTTGGTGCACC
TGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAA
CATAAAATTATGATCCACACAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGG
TAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTC
TGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTT
GTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATTTTTCGTATATAGTCTTGATACTTTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATT
CTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGATTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATAAC
AT
Intron 2 GTCAGTCGTC ... TTCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.92 | 52 | 35 | 44 |
| A2 | 45.02 | 39.5 | 27 | 37 |
| A3 | 30.02 | 56 | 37 | 11 |
| A4 | 36.04 | 27 | 14 | 16 |
| A5 | 52.09 | 12.5 | 10 | 17 |
| A6 | 32.05 | 29 | 14 | 13 |
| A7 | 34.8 | 51.5 | 20 | 34 |
| A8 | 34.66 | 34.5 | 18 | 18 |
| A9 | 35.25 | 39 | 23 | 19 |
| A10 | 42.81 | 48.5 | 34 | 37 |
>TRINITY_DN118835_c0_g1_i9 from sample A3 / Example spliced isoformTATTAACATGTCCAACTTCATTTTTTTTTTCACCATATTTATGGGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTG
AGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCC
CAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACA
>TRINITY_DN118835_c0_g1_i4 from sample A3 / Example unspliced isoform:TATTAACATGTCCAACTTCATTTTTTTTTTCACCATATTTATGGGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAgtc
agtcgtcgattgagaatagccgcctctgctattacgctactcgaacttcaatggtatatttctgtatccgaaaattcttgtgatgagggtaccatggttccatgaccgaaataaatagcgcaggcttcccgtgagtttgtggtaggtagtgcaagctctttgaaattgctatgcaagttcgaagctcagtttgggaagaa
tcagtgaaggagctgcagtgttttggatcggtgtcgattgtactggccattggacaagttgtttccaatatgatattcaatgttggccaagggagttgttaaaaaaaattgcaaccctgcaatttatgaagcaattagtgaggcatatgcattttctatcattgaattagtactttctttagtcaatggattgatggcca
agttccaagaagatttttatttggagattctcttgatcacattgcattttctttttacaacctaatgctctaagatgtgcttgtttattctctttgttcacagcttaatgaacctgtgctggtttttttctatattcacagcttaatgctctatattggcataagtttgcagattttcatttcaatttttctcttgttca
ctgtacattttctttctctggttttaaggctctaaattgttctagattttatcttgttcatatctttaaagctctagatcatgctatgtttgtggattttctccagttaggcctggatgtcattatttttgtatcaaataagctgttttttggactgtgtttttgagacgaatgttgtatacatcatctctgatcaaata
atgcctgcacaccttcaagtttggtattagttatccgctgtagaatgattcaggttcctttatgacatttgctctctattcttcttacagaccaatgagatagatattaatgtcaacttttcatttcagGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAA
ACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTG
TGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAG
GTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGG
Intron 3 GTATGTCAGC ... ATCCACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.13 | 13.3 | 42 | 18 |
| A2 | 57.48 | 15 | 24 | 16 |
| A3 | 50.11 | 13.6 | 19 | 7 |
| A4 | 65.46 | 11.7 | 29 | 14 |
| A5 | 49.16 | 5.4 | 7 | 3 |
| A6 | 54.36 | 29 | 31 | 37 |
| A7 | 56.17 | 52.4 | 76 | 55 |
| A8 | 57.43 | 38.9 | 65 | 37.7 |
| A9 | 58.53 | 30.4 | 43 | 41 |
| A10 | 58.72 | 22 | 30 | 31 |
>TRINITY_DN129438_c0_g1_i9 from sample A1 / Example spliced isoformCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGTAACAAGCTCTCTCAAGATGTTTTGCAAGATCATTTTCGTGCATATGTTATTGGTAGCCTTGCACAAATCATAAAATATTTTGTATTTTTGTTTATTTATTTTCGTGCATATGTTATTT
GTAGCCTTGCACAAATCATAAAATATTTTGTCTTTTTGTTTATTTATTTTGATTTTGAGCAGGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAG
TTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAAT
TAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATAT
TCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATC
AAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGA
CTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAG
GGTATGTGAACATAATTTCTTGCTCTTATATGGGATCTTCACTCTCACTCATATGTTCTGTTTTGCAGAAATCAATGCTTGATCATGTGTAGTATAAAACATGCAAAATGCATAAAGTACGTCAATGTCTATTTTGAATATTTCTAGATGTATATCAACAATATTTTATGCTGTCATGTCGGTGTTTGTTTTTTATAAGG
TCATTCGATTAGGGCTGGTCTTTAAAAATATTTTATTTGCCTTAGATATCTTGTCACTGAGCCTTTTTAAGATGTTTGTGTAGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTC
CACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAAT
TCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATT
CAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGG
GGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTATGGACGTCGTACGTTCAAACTCCCCCTCGT
GGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCC
ATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTG
ATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAA
ATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAAAAAAATTGCATATTTTCATTGGAATATATTCCCGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAG
CCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGCC
>TRINITY_DN129438_c0_g1_i11 from sample A1 / Example unspliced isoform:CTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGTAACAAGCTCTCTCAAGATGTTTTGCAAGATCATTTTCGTGCATATGTTATTGGTAGCCTTGCACAAATCATAAAATATTTTGTATTTTTGTTTATTTATTTTCGTGCATATGTTATTT
GTAGCCTTGCACAAATCATAAAATATTTTGTCTTTTTGTTTATTTATTTTGATTTTGAGCAGGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAG
TTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAAT
TAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATAT
TCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATC
AAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGA
CTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAG
GGTATGTGAACATAATTTCTTGCTCTTATATGGGATCTTCACTCTCACTCATATGTTCTGTTTTGCAGAAATCAATGCTTGATCATGTGTAGTATAAAACATGCAAAATGCATAAAGTACGTCAATGTCTATTTTGAATATTTCTAGATGTATATCAACAATATTTTATGCTGTCATGTCGGTGTTTGTTTTTTATAAGG
TCATTCGATTAGGGCTGGTCTTTAAAAATATTTTATTTGCCTTAGATATCTTGTCACTGAGCCTTTTTAAGATGTTTGTGTAGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTC
CACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAAT
TCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATT
CAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGG
GGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTgtatgtcagcctccatactatataactatga
aattccatttttaccacagcttacaaatcatattgtttacataaacataaaattatgatccacacagATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACT
TTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAG
GACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTA
CACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATTTTTCGTATATAGTCTTGATACTTTATCCTTGATACTCTATCCGGTGAAAAAAAAATTGCATATTTTCATTGGAATATATTCCCGT
TCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGG
CATTTTATGGGGCC
Intron 4 GTATGCTTCG ... TTTGTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.16 | 21 | 11 | 33 |
| A2 | 70.21 | 7 | 10 | 23 |
| A3 | 78.57 | 6 | 22 | 22 |
| A4 | 75.31 | 10 | 27 | 34 |
| A5 | 74.19 | 4 | 9 | 14 |
| A6 | 64.29 | 5 | 8 | 10 |
| A7 | 56.1 | 18 | 18 | 28 |
| A8 | 51.85 | 13 | 7 | 21 |
| A9 | 60 | 12 | 13 | 23 |
| A10 | 47.66 | 28 | 12 | 39 |
>TRINITY_DN44051_c0_g1_i8 from sample A9 / Example spliced isoformACGAAACCGACAGGAGGCGGCACCGGAAGGCCGAAACTAGCTTAGGTGTCGATATATCAACGGTTGGAATCTTCGAACGAGCACACGGGATATGCCCGTCCTGCAATAATGACAATATCGAGAGGCGAATGAGGCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACG
GTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCC
CCCCAGGTTTGTCATGAATCTTTCATGGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTC
CTGTGGAAGATGATGAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCA
TCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCTAATGAAAAGGGAAACATGTTCGATCATGATATGGTGCTTAAAATACTCAGTAATCCACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAA
>TRINITY_DN44051_c0_g1_i15 from sample A9 / Example unspliced isoform:ACGAAACCGACAGGAGGCGGCACCGGAAGGCCGAAACTAGCTTAGGTGTCGATATATCAACGGTTGGAATCTTCGAACGAGCACACGGGATATGCCCGTCCTGCAATAATGACAATATCGAGAGGCGAATGAGGCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACG
gtatgcttcgatcctgtacataccttcaataccctttttcaaaactaaaaacgcgatccagggcagcatgaatatgttttcccagccaaaagcattgcggcggcaattgctatatcttagaaccaactggattttggagatttcatgacagcactttctctattacatattgcctaggcttcaatatcaagctattcggc
aatttcagagcactggcactggggtatcgaatggtcttgcccccaaagctgtccagacaaagcctaagaatcaaggagttgttaagagagtatcatgggctcccgagtacaatttgtgccagGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCT
CGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTTTCATGGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCG
AGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCAT
ATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCTAAT
GAAAAGGGAAACATGTTCGATCATGATATGGTGCTTAAAATACTCAGTAATCCACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCATGATGCACCTAACACTCCTTGCAATGTTGGCCACGATCAGAGCCTATTAACTAT
GTCCAGACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTC
CGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGATGGACGTCGTACGTTCAAACTCCCCCTCGT
GGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCC
ATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTG
ATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAA
ATATGTTGATAAACATTTTTCGTATATAGTCTTGATACTTTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAG
CCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATAACATGGTTTTACTGGTTATTTAATATTAGTGTTTACCTTGATTGCTA
Intron 5 GTATGTCAGC ... GGAGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 86.67 | 3 | 37 | 2 |
| A2 | 64.71 | 9 | 24 | 9 |
| A3 | 68.75 | 5 | 17 | 5 |
| A4 | 78.95 | 4 | 25 | 5 |
| A5 | 69.23 | 2 | 7 | 2 |
| A6 | 58.54 | 17 | 30 | 18 |
| A7 | 68.15 | 25 | 76 | 31 |
| A8 | 69.23 | 20 | 64 | 26 |
| A9 | 65.12 | 15 | 39 | 17 |
| A10 | 70.59 | 10 | 30 | 18 |
>TRINITY_DN47568_c2_g1_i1 from sample A7 / Example spliced isoformTTTCTGATTCAACCACTATGGGTATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGG
GTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGT
CTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGAT
>TRINITY_DN47568_c2_g1_i9 from sample A7 / Example unspliced isoform:GCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATT
TTGGAGATTTCATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGTTTGTAGCACTATGTTGTAATATCTTTGGGTTGGGATTCCTCTATCTATTTTTGTGTTTTGTTTTGTCTCCAAATGTAACGAGGTTGGGGATTGTTGATAAGATCCACTGCCCAGAA
GATTTTTTACAAGACTTCTGTTGATTGAAGCTTCCAACAAACCCAAGTCTTTTTTATTGGGCGGTAAATGAAAATACTATGTCAGAGAAACGTCGTGAGATGCTTTTGCATTATAAATTGTGATATCAATGGGATATAACAGGACCCATTATATGATCAGGAAGCTTAAGTAGAGTAATATCAAGGGTAGTGTTAGCTTT
TGTTTGACATCTGGAAGAGGCAATCTCGTGAGGTTTGAGCTCTGGACCTCTGATGGCTGCAATTTTGTTATTGGAAGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTG
CTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATG
AAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAA
ACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTA
AACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATT
AACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCAT
TGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTgtatgtcagcctccatactatataactatgaaattccatttttaccacagcttacaaatcatattgtttacataaacataaaattatgatccacacaggtaaactagatatccaaatcgttaa
attttcattcgaaaaactaatatataatattgaaaattaaattaattctcaatttttcaattttataactatgtaatctagtcaataattgccagtattgactgatggcagcatgacgcctaaattgtttacttgtggatcgaggcttttgttagtaaagtacatagaggaaggttcctgatctatttccatgcttatta
tttgggagtttcagATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATT
TACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTA
TTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGC
AAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATA
TTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATA
Intron 6 GTAAACTAGA ... CTGATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52 | 12 | 13 | 4 |
| A2 | 46.15 | 7 | 6 | 1 |
| A3 | 33.33 | 2 | 1 | 1 |
| A4 | 46.67 | 8 | 7 | 2 |
| A5 | 50 | 1 | 1 | 0 |
| A6 | 41.67 | 14 | 10 | 2 |
| A7 | 48.78 | 21 | 20 | 10 |
| A8 | 41.38 | 17 | 12 | 1 |
| A9 | 50 | 15 | 15 | 1 |
| A10 | 47.06 | 9 | 8 | 1 |
>TRINITY_DN47568_c2_g1_i15 from sample A7 / Example spliced isoformGCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATT
TTGGAGATTTCATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGTTTGTAGCACTATGTTGTAATATCTTTGGGTTGGGATTCCTCTATCTATTTTTGTGTTTTGTTTTGTCTCCAAATGTAACGAGGTTGGGGATTGTTGATAAGATCCACTGCCCAGAA
GATTTTTTACAAGACTTCTGTTGATTGAAGCTTCCAACAAACCCAAGTCTTTTTTATTGGGCGGTAAATGAAAATACTATGTCAGAGAAACGTCGTGAGATGCTTTTGCATTATAAATTGTGATATCAATGGGATATAACAGGACCCATTATATGATCAGGAAGCTTAAGTAGAGTAATATCAAGGGTAGTGTTAGCTTT
TGTTTGACATCTGGAAGAGGCAATCTCGTGAGGTTTGAGCTCTGGACCTCTGATGGCTGCAATTTTGTTATTGGAAGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTG
CTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATG
AAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAA
ACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTA
AACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATT
AACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCAT
TGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGCATGACGCCTAAATTGTTTACTTGT
GGATCGAGGCTTTTGTTAGTAAAGTACATAGAGGAAGGTTCCTGATCTATTTCCATGCTTATTATTTGGGAGTTTCAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGG
TTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCA
CGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTG
GTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAA
TATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTG
CAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATA
>TRINITY_DN47568_c2_g1_i9 from sample A7 / Example unspliced isoform:GCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATT
TTGGAGATTTCATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGTTTGTAGCACTATGTTGTAATATCTTTGGGTTGGGATTCCTCTATCTATTTTTGTGTTTTGTTTTGTCTCCAAATGTAACGAGGTTGGGGATTGTTGATAAGATCCACTGCCCAGAA
GATTTTTTACAAGACTTCTGTTGATTGAAGCTTCCAACAAACCCAAGTCTTTTTTATTGGGCGGTAAATGAAAATACTATGTCAGAGAAACGTCGTGAGATGCTTTTGCATTATAAATTGTGATATCAATGGGATATAACAGGACCCATTATATGATCAGGAAGCTTAAGTAGAGTAATATCAAGGGTAGTGTTAGCTTT
TGTTTGACATCTGGAAGAGGCAATCTCGTGAGGTTTGAGCTCTGGACCTCTGATGGCTGCAATTTTGTTATTGGAAGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTG
CTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATG
AAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAA
ACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTA
AACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATT
AACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCAT
TGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGgtaaactagatatccaaatcgttaa
attttcattcgaaaaactaatatataatattgaaaattaaattaattctcaatttttcaattttataactatgtaatctagtcaataattgccagtattgactgatggcagCATGACGCCTAAATTGTTTACTTGTGGATCGAGGCTTTTGTTAGTAAAGTACATAGAGGAAGGTTCCTGATCTATTTCCATGCTTATTA
TTTGGGAGTTTCAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATT
TACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTA
TTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGC
AAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATA
TTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATA
Intron 7 GTAGGCCACT ... TTCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.2 | 40 | 77 | 44 |
| A2 | 55.56 | 34 | 48 | 37 |
| A3 | 43.16 | 54 | 71 | 11 |
| A4 | 50 | 23 | 30 | 16 |
| A5 | 64.52 | 11 | 23 | 17 |
| A6 | 47.37 | 25 | 32 | 13 |
| A7 | 41.1 | 43 | 26 | 34 |
| A8 | 40.21 | 29 | 21 | 18 |
| A9 | 35.24 | 34 | 18 | 19 |
| A10 | 46.94 | 39 | 32 | 37 |
>TRINITY_DN48449_c0_g1_i8 from sample A10 / Example spliced isoformGGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGG
CTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATG
>TRINITY_DN48449_c0_g1_i3 from sample A10 / Example unspliced isoform:GGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAgtaggccactttcgatatcaaaccttttttttctttttttttcttt
ttctttttttttctggggtttcataataccagtcataggcttcaactggattgttttgcatcattggagcctctttttgtggagttgacggaacattctggcactgctggcatggagtcgctggaatgtcttcgcccacaatacctgaaatcgcaattcagaacaaatcatgacgaagggtttggatttggaattggaaa
tatgacaaatgtttttttttgttttttaatatgtaccttctttagaattgagacatgaattcgtcaagtagcagcggcaacctgcaaaaccagaaatttctatagcaattgtttgcaaattttctatggaatttaatggatttaaagatggttttgcttaccttcataagtagaggggacatagggactcaaacttgggt
gaacaccattgtttagagctttttacaggaggtgagattattacaacgatagccgcagcaacaactttttattagagaataaaaaacagttccctgccaagcagaaggaactctataaatggattctgcagcattggattaattttgcccattttacaatgaggcatatcggctgcaatttgaaatcaagtagacatctt
tttcactactcttcacgggtaaacatgctcaacaccaagtggcagacatgctcagcatcacttgacggctatgcagcaactctggacatgcaacaacttagaaggcggtggagacttgagcattgacattgaagctcaatatgcaagctcccttgctactacaaatgcacaccctgtgaacacactatcatccttttgtc
atgaggctattgtttattcagtggcggaaaaatttatgatatagaatggaatgccttcttttaagcagtagcctagaaacttcttcatatacaaccgagacatattagcccttgtatacctggttgcagtcgcaaaggtaacaagctctctcaagatgttttgcaagatcattttcgtgcatatgttattggtagccttg
cacaaatcataaaatattttgtatttttgtttatttattttcgtgcatatgttatttgtagccttgcacaaatcataaaatattttgtctttttgtttatttattttgattttgagcaggtcagtcgtcgattgagaatagccgcctctgctattacgctactcgaacttcaatggtatatttctgtatccgaaaattct
tgtgatgagggtaccatggttccatgaccgaaataaatagcgcaggcttcccgtgagtttgtggtaggtagtgcaagctctttgaaattgctatgcaagttcgaagctcagtttgggaagaatcagtgaaggagctgcagtgttttggatcggtgtcgattgtactggccattggacaagttgtttccaatatgatattc
aatgttggccaagggagttgttaaaaaaaattgcaaccctgcaatttatgaagcaattagtgaggcatatgcattttctatcattgaattagtactttctttagtcaatggattgatggccaagttccaagaagatttttatttggagattctcttgatcacattgcattttctttttacaacctaatgctctaagatgt
gcttgtttattctctttgttcacagcttaatgaacctgtgctggtttttttctatattcacagcttaatgctctatattggcataagtttgcagattttcatttcaatttttctcttgttcactgtacattttctttctctggttttaaggctctaaattgttctagattttatcttgttcatatctttaaagctctaga
tcatgctatgtttgtggattttctccagttaggcctggatgtcattatttttgtatcaaataagctgttttttggactgtgtttttgagacgaatgttgtatacatcatctctgatcaaataatgcctgcacaccttcaagtttggtattagttatccgctgtagaatgattcaggttcctttatgacatttgctctcta
ttcttcttacagaccaatgagatagatattaatgtcaacttttcatttcagGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAA
GCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGGTATGCGAACATAATTTCTTGCTCTTATATGGGGTCTTGCACTCTCACTCATATGTTCTGTTATGCAGAAATCAATGCTTGATCATGTGTAGAATAAAACATGCAAAGTGCATAAAGTACGTCAATGTCTATTTTGAATATT
TCTAGATGTATATCAACAATATTCTATGCTGTCATGTCGGTGTTTGTTTTTAATAAGGTCATTCGATTAGGGCTGGTCTTTAAAAATATTTTATTTGCCTTAGATATCTTGTCACTGAGCCTTTTTAAGATGTTTGTGTAGTTTGTCATGAATCTTTCATGGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGT
ACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGG
GAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATA
GCAAAATCTAATGAAAAGGGAAACATGTTCGATCATGATATGGTGCTTAAAATACTCAGTAATCCACAAATAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCATGATGCACCTAACACTCCTTGCAATGTTGGCCACGATCAGAG
CCTATTAACTATGTCCAGACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATACGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCT
CTCCATTGCCTCCGATGGCTGGACAGGCAAATTCACATCTTTCGTCAATGCCTGTGACAGTTTCTGTTTCAACCACTATGGGTGTATGTCAGCCTTCTATGGGAGTTTCAACAACTGCATCAACAGCCGCCTCAGTGAATCAATCAAGTTTTCCAGATGAACAATACTACAAGAATCTTATCCAAAAACATGGTTTACAA
AATGACAATGATCAGATCAAACATCAACATGGTATTCAGTACTACAGAGACCTTATTCAGCAACATGGTGGGGCAGATAAGTTTGAAGAACAAAAGTGCCAAGGTGGTAATTTTGCTAATAATGAAAGAGCATTTGGAGATCCAAATAGATCCAAATTTCGCAAACCCTGCTTGTACTTTAACACACCAAATGGTTGTCG
TCGTGGAGCTAGCTGTGCTTTTCTGCATGAGGAGTTCGATAGACCAAAATTTGATGTATCTGACTTGAAACTTTCAAAGAGGGCCAAGGCCGAAACTGAAGCTCCTGTAAGAAATTGAATTGACATTTGATTGTCTGGTATAGCTCTTGCATGTGTTTTCCTTTTGCTTTTCATATTCGTACCGCGAGGGATCCCTTTAA
TTGTGACCTCACTACAATCTTGTATAAGCTTACAACTGAGATAATGCAAGTAAATTTTGTATATATCGGAAATCAGCAGACTAGATACTTTGTCTTAGGCTTATGATGTACATGGATTTTGAAGGAGACTGATGATGGGAGTTTTTGAATTGAATTCATGCCTTGGGGGTTTTGTTTTAAGCCAGTAATCTAGCAAGTTT
TCTAGTTGTCCTAGAGCAATTACTTGTAAGGGTTGTTAAAGATTGATAGCAGCAAACATTCTATTGGCCTGGTTGGTTATTTGCTCAGTATAATAGTCACTCAGACCCTGGGTGACTGGACACATTAAAATTAACTGCTCAAAGAAGTAGTTTAAATGTTCGCATGGCAGAAAATTATTGTTTTAATACTCAACTTATGT
GATGCTTATGCTGTGGAAGATATCGGTGGTGTGGTCTAGTGGCCAGAAGTCGAAAAAAACCAAAAAACATTTTTGTTTAAAGCCTTGCAATTTCGCTATGAAGCATACTGAAATAGCTAGTGTTGGTCATGTTGTATATTTGCTAC
Intron 8 GTACGTCAAT ... GTTTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 93.75 | 1 | 12 | 18 |
| A2 | 56.52 | 5 | 2 | 11 |
| A3 | 81.82 | 4 | 14 | 22 |
| A4 | 92.59 | 1 | 12 | 13 |
| A5 | 73.33 | 2 | 7 | 4 |
| A6 | 72.41 | 4 | 9 | 12 |
| A7 | 85.71 | 2 | 14 | 10 |
| A8 | 65 | 7 | 11 | 15 |
| A9 | 59.18 | 10 | 9 | 20 |
| A10 | 48.94 | 12 | 9 | 14 |
>TRINITY_DN44651_c0_g1_i13 from sample A6 / Example spliced isoformGAAATCAATGCTTGATCATGTGTGGTATAAAACATGCAAAATGCATAAATTTGTCATGAATCTTTCATGGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGG
AGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGG
>TRINITY_DN44651_c0_g1_i14 from sample A6 / Example unspliced isoform:CGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGA
CAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGGTATGTGAACATAATTTCTTGCTCTTATATGGGATCTTCACTCTCACTCATATGTTCTGTTTTGCAGAAATCAATGCTTGATCATGTGTAGAATAAAACATGCAAAATGCATAAAgtacgtcaatgtcta
ttttgaatatttctagatgtatatcaacaatattttatgctgtcatgtcggtgtttgttttttataaggtcattcgattagggctggtctttacaaatattttctttcccttagagatcttgtcactgagcctttttaagatgtttgtgtagTTTGTCATGAATCTTTCATGGCAAGTAGTTGCTGGGGATGAAAGTTTA
GAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTT
TGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTT
TTGTTGCAATAGCAAAATCCACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAA
Intron 9 GTGGCTATAT ... TTACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.74 | 51 | 5 | 17 |
| A2 | 21.52 | 31 | 5 | 12 |
| A3 | 25 | 30 | 7 | 13 |
| A4 | 21.28 | 37 | 4 | 16 |
| A5 | 11.76 | 15 | 2 | 2 |
| A6 | 20.88 | 36 | 4 | 15 |
| A7 | 11.48 | 54 | 3 | 11 |
| A8 | 10.96 | 65 | 7 | 9 |
| A9 | 10.61 | 59 | 3 | 11 |
| A10 | 14.5 | 56 | 5 | 14 |
>TRINITY_DN118835_c0_g1_i4 from sample A3 / Example spliced isoformTATTAACATGTCCAACTTCATTTTTTTTTTCACCATATTTATGGGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTC
AGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAGTTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAA
TCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAATTAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCA
AGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATATTCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCA
CTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATCAAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATA
ATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAA
ACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTG
TGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAG
GTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGG
>TRINITY_DN118835_c0_g1_i21 from sample A3 / Example unspliced isoform:TATTAACATGTCCAACTTCATTTTTTTTTTCACCATATTTATGGGGCTCTTGGTGGGAAAATGGGCAATTTCTATTGAGGAGAGGGAGATTGCGTGGGCATGTCGGGTTCAGTGGCTGGGATTTCTTTAGGCACCGGCGTCGGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGGC
TGCAATTTGAAATCAAGTAGACATCTTTTTCACTACTCTTCACGGGTAAACATGCTCAACACCAAGTGGCAGACATGCTCAGCATCACTTGACGGCTATGCAGCAACTCTGGACATGCAACAACTTAGAAGGCGGTGGAGACTTGAGCATTGACATTGAAGCTCAATATGCAAGCTCCCTTGCTACTACAAATGCACACC
CTGTGAACACACTATCATCCTTTTGTCATGAGGCTATTGTTTATTCAGTGGCGGAAAAATTTATGATATAGAATGGAATGCCTTCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGTAACAAGCTCTCTCAAGATGTTTTGCAAGATCATT
TTCGTGCATATGTTATTGGTAGCCTTGCACAAATCATAAAATATTTTGTATTTTTGTTTATTTATTTTCGTGCATATGTTATTTGTAGCCTTGCACAAATCATAAAATATTTTGTCTTTTTGTTTATTTATTTTGATTTTGAGCAGGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAA
TGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAGTTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATT
GGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAATTAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTC
TTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATATTCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTA
TCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATCAAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTC
AGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCT
GTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGGTATGTGAACATAATTTCTTGCTCTTATATGGGATCTTCACTCTCACTCATATGTTCTGTTTTGCAGAAATCAATGCTTGATCATGTGTAGTATAAAACATGCAAAATGCATAAA
GTACGTCAATGTCTATTTTGAATATTTCTAGATGTATATCAACAATATTTTATGCTGTCATGTCGGTGTTTGTTTTTTATAAGGTCATTCGATTAGGGCTGGTCTTTAAAAATATTTTATTTGCCTTAGATATCTTGTCACTGAGCCTTTTTAAGATGTTTGTGTAGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTT
GGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGgtggctatattttttatgttcttcggccttctatgtttttaggttagataactatgatgtcaaacgttttatgagacttgcaatgaattacttgcagTCCCATAGAGCC
ACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCC
CAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCTAATGAAAAGGGAAACATGTTCGATCATGATATGGTGCTTAAAATACTCAGTAATCCACAAATAATTGA
AACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCATGATGCACCTAACACTCCTTGCAATGTTGGCCACGATCAGAGCCTATTAACTATGTCCAGACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAATAATTGGAAATAATAGGAGCAGTC
TAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATACGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACAGGCAAATTCACATCTTTCGTCAATGCCTGTGACAGTTTCTGTTTCAACCACT
ATGGGTGTATGTCAGCCTTCTATGGGAGTTTCAACAACTGCATCAACAGCCGCCTCAGTGAATCAATCAAGTTTTCCAGATGAACAATACTACAAGAATCTTATCCAAAAACATGGTTTACAAAATGACAATGATCAGATCAAACATCAACATGGTATTCAGTACTACAGAGACCTTATTCAGCAACATGGTGGGGCAGA
TAAGTTTGAAGAACAAAAGTGCCAAGGTGGTAATTTTGCTAATAATGAAAGAGCATTTGGAGATCCAAATAGATCCAAATTTCGCAAACCCTGCTTGTACTTTAACACACCAAATGGTTGTCGTCGTGGAGCTAGCTGTGCTTTTCTGCATGAGGAGTTCGATAGACCAAAATTTGATGTATCTGACTTGAAACTTTCAA
AGAGGGCCAAGGCCGAAACTGAAGCTCCTGTAAGAAATTGAATTGACATTTGATTGTCTGGTATAGCTCTTGCATGTGTTTTCCTTTTGCTTTTCATATTCGTACCGCGAGGGATCCCTTTAATTGTGACCTCACTACAATCTTGTATAAGCTTACAACTGAGATAATGCAAGTAAATTTTGTATATATCGGAAATCAGC
AG
Intron 10 GTTTGTAGCA ... TTATTGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.41 | 6 | 17 | 19.8 |
| A2 | 50.7 | 14 | 20 | 8.8 |
| A3 | 55.56 | 12 | 17 | 13 |
| A4 | 51.26 | 21 | 14 | 30.2 |
| A5 | 52.55 | 13 | 14 | 14.8 |
| A6 | 62.91 | 2 | 2 | 4.8 |
| A7 | 68.98 | 4 | 7 | 10.8 |
| A8 | 57.42 | 4 | 3 | 7.8 |
| A9 | 38.17 | 11 | 10 | 3.6 |
| A10 | 39.03 | 22 | 10 | 18.2 |
>TRINITY_DN118835_c0_g1_i15 from sample A3 / Example spliced isoformTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATTTTGGAGATTTC
ATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTGCTGAAG
ATGCCCCATTTCAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTT
TCATGGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGG
AGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTG
CAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCTAATGAAAAGGGAAACATGTTCGATCATGATATGGTGCTTAAAATACTCAGTAATCCACAAATAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAG
CA
>TRINITY_DN118835_c0_g1_i2 from sample A3 / Example unspliced isoform:TGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATTTTGGAGATTTC
ATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGgtttgtagcactatgttgtaatatctttgggttgggattcctctatctatttttgtgttttgttttgtctccaaatgtaacgaggttggggattgttgataagatccactgcccagaagattttttaca
agacttctgttgattgaagcttccaacaaacccaagtcttttttattgggcggtaaatgaaaatactatgtcagagaaacgtcgtgagatgcttttgcattataaattgtgatatcaatgggatataacaggacccattatatgatcaggaagcttaagtagagtaatatcaagggtagtgttagcttttgtttgacatc
tggaagaggcaatctcgtgaggtttgagctctggacctctgatggctgcaattttgttattggaagGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTGCTGAAGATGCC
CCATTTCAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTTTCATG
GCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACT
TGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACA
GAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCTAATGAAAAGGGAAACATGTTCGATCATGATATGGTGCTTAAAATACTCAGTAATCCACAAATAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCA
Intron 11 GTATGCTTCG ... TTATTGGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.42 | 4 | 11 | 19.9 |
| A2 | 51.18 | 9 | 10 | 8.9 |
| A3 | 74.47 | 6 | 22 | 13 |
| A4 | 70.54 | 12 | 27 | 30.5 |
| A5 | 53.45 | 10 | 8 | 14.9 |
| A6 | 86.55 | 1 | 8 | 4.9 |
| A7 | 67.34 | 7 | 18 | 10.9 |
| A8 | 61.1 | 4.8 | 7 | 7.9 |
| A9 | 49.66 | 8.5 | 13 | 3.8 |
| A10 | 62.86 | 9 | 12 | 18.5 |
>TRINITY_DN120903_c0_g1_i1 from sample A2 / Example spliced isoformGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTC
TGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTTTCATGGCAAGTAGTTG
CTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACTTGAATGAAGTG
CCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACAT
TACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCCACAAAGAATTGAAACATTGACA
>TRINITY_DN120903_c0_g1_i12 from sample A2 / Example unspliced isoform:GGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGgtatgcttcgatcctgtacataccttcaataccctttttcaaaactaaaaacgcgatccagggcagcatgaatatgttttcccagccaaaagcattgcggcggcaattgctatatcttagaaccaactggattttggagatttca
tgacagcactttctctattacatattgcctaggcttcaatatcaagctattcggcaatttcagagcactggtttgtagcactatgttgtaatatctttgggttgggattcctctatctatttttgtgttttgttttgtctccaaatgtaacgaggttggggattgttgataagatccactgcccagaagattttttacaa
gacttctgttgattgaagcttccaacaaacccaagtcttttttattgggcggtaaatgaaaatactatgtcagagaaacgtcgtgagatgcttttgcattataaattgtgatatcaatgggatataacaggacccattatatgatcaggaagcttaagtagagtaatatcaagggtagtgttagcttttgtttgacatct
ggaagaggcaatctcgtgaggtttgagctctggacctctgatggctgcaattttgttattggaagGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTGCTGAAGATGCCC
CATTTCAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTTTCATGG
CAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACTT
GAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAG
AACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCCACAAAGAATTGAAACATTGACA
Intron 12 GTAACAAGCT ... TTTTGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 12 | 8 | 16 |
| A2 | 70.21 | 7 | 19 | 14 |
| A3 | 41.18 | 10 | 9 | 5 |
| A4 | 38.46 | 16 | 10 | 10 |
| A5 | 40.74 | 8 | 8 | 3 |
| A6 | 11.11 | 8 | 0 | 2 |
| A7 | 33.33 | 23 | 13 | 10 |
| A8 | 34.48 | 19 | 11 | 9 |
| A9 | 56.52 | 10 | 11 | 15 |
| A10 | 51.72 | 14 | 16 | 14 |
>TRINITY_DN48449_c0_g1_i18 from sample A10 / Example spliced isoformGTGAATCCAGGAAGCCCAATCCAATATTTTTTCTTTAGTGGACTCTCAACTTTACCCAACCTGTACACACTAACCGGGCTGCAATTTGAAATCAAGTAGACATCTTTTTCACTACTCTTCACGGGTAAACATGCTCAACACCAAGTAGCAAACATGCTCAGCATCACTTGACGGCTATGCAGCAACTCTGGACATGCAAC
AACTTAGAAGGCGGTGGAGACTTGAGCATTGACATTGAAGCTCAATATGCAAGCTCCCTTGCTACTACAAATGCACACCCTGTGAACACACTATCATCCTTTTGTCATGAGGCTATTGTTTATTCAGTGGCGGAAAAATTTATGATATAGAATGGAATGCCTTCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAA
CCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATG
>TRINITY_DN48449_c0_g1_i4 from sample A10 / Example unspliced isoform:TGGTGGGAAAATGGGCAATTTCTATTGAGGAGAGGGAGATTGCGTGGGCATGTCGGGTTCAGTGGCTGGGATTTCTTTAGGCACCGGCGTCGGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGGCTGCAATTTGAAATCAAGTAGACATCTTTTTCACTACTCTTCACGGGTAAA
CATGCTCAACACCAAGTGGCAGACATGCTCAGCATCACTTGACGGCTATGCAGCAACTCTGGACATGCAACAACTTAGAAGGCGGTGGAGACTTGAGCATTGACATTGAAGCTCAATATGCAAGCTCCCTTGCTACTACAAATGCACACCCTGTGAACACACTATCATCCTTTTGTCATGAGGCTATTGTTTATTCAGTG
GCGGAAAAATTTATGATATAGAATGGAATGCCTTCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGgtaacaagctctctcaagatgttttgcaagatcattttcgtgcatatgttattggtagccttgcacaaatcataaaatattttgta
tttttgtttatttattttcgtgcatatgttatttgtagccttgcacaaatcataaaatattttgtctttttgtttatttattttgattttgagcagGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCC
ATGACCGAAATAAATAGCGCAGGCTTCCCGTGAGTTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTA
AAAAAAATTGCAACCCTGCAATTTATGAAGCAATTAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCAC
AGCTTAATGAACCTGTGCTGGTTTTTTTCTATATTCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTC
TCCAGTTAGGCCTGGATGTCATTATTTTTGTATCAAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGAT
AGATATTAATGTCAACTTTTCATTTCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAA
TTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATT
CTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCAC
TCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGAT
GCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATACGGAAGTGAAAAGCTTTGGTGCACCTGT
AGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACAT
AAAATTATGATCCACACAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAG
GTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGT
GTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTC
TCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTT
CAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGATTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATAACAT
Intron 13 GTATGCGAAC ... GTTTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.89 | 51 | 31 | 19 |
| A2 | 23.75 | 20 | 1 | 11.5 |
| A3 | 47.54 | 16 | 7 | 22 |
| A4 | 32.11 | 37 | 20 | 15 |
| A5 | 21.95 | 16 | 6 | 3 |
| A6 | 27.68 | 32 | 11 | 13.5 |
| A7 | 21.91 | 49 | 18 | 9.5 |
| A8 | 29.63 | 38 | 17 | 15 |
| A9 | 16.82 | 58 | 7 | 16.5 |
| A10 | 25.92 | 50 | 19 | 16 |
>TRINITY_DN48449_c0_g1_i4 from sample A10 / Example spliced isoformTGGTGGGAAAATGGGCAATTTCTATTGAGGAGAGGGAGATTGCGTGGGCATGTCGGGTTCAGTGGCTGGGATTTCTTTAGGCACCGGCGTCGGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGGCTGCAATTTGAAATCAAGTAGACATCTTTTTCACTACTCTTCACGGGTAAA
CATGCTCAACACCAAGTGGCAGACATGCTCAGCATCACTTGACGGCTATGCAGCAACTCTGGACATGCAACAACTTAGAAGGCGGTGGAGACTTGAGCATTGACATTGAAGCTCAATATGCAAGCTCCCTTGCTACTACAAATGCACACCCTGTGAACACACTATCATCCTTTTGTCATGAGGCTATTGTTTATTCAGTG
GCGGAAAAATTTATGATATAGAATGGAATGCCTTCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGTAACAAGCTCTCTCAAGATGTTTTGCAAGATCATTTTCGTGCATATGTTATTGGTAGCCTTGCACAAATCATAAAATATTTTGTA
TTTTTGTTTATTTATTTTCGTGCATATGTTATTTGTAGCCTTGCACAAATCATAAAATATTTTGTCTTTTTGTTTATTTATTTTGATTTTGAGCAGGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCC
ATGACCGAAATAAATAGCGCAGGCTTCCCGTGAGTTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTA
AAAAAAATTGCAACCCTGCAATTTATGAAGCAATTAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCAC
AGCTTAATGAACCTGTGCTGGTTTTTTTCTATATTCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTC
TCCAGTTAGGCCTGGATGTCATTATTTTTGTATCAAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGAT
AGATATTAATGTCAACTTTTCATTTCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAA
TTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATT
CTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCAC
TCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGAT
GCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATACGGAAGTGAAAAGCTTTGGTGCACCTGT
AGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACAT
AAAATTATGATCCACACAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAG
GTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGT
GTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTC
TCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTT
CAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGATTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATAACAT
>TRINITY_DN48449_c0_g1_i27 from sample A10 / Example unspliced isoform:GGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTAGGCCACTTTCGATATCAAACCTTTTTTTTCTTTTTTTTTCTTT
TTCTTTTTTTTTCTGGGGTTTCATAATACCAGTCATAGGCTTCAACTGGATTGTTTTGCATCATTGGAGCCTCTTTTTGTGGAGTTGACGGAACATTCTGGCACTGCTGGCATGGAGTCGCTGGAATGTCTTCGCCCACAATACCTGAAATCGCAATTCAGAACAAATCATGACGAAGGGTTTGGATTTGGAATTGGAAA
TATGACAAATGTTTTTTTTTGTTTTTTAATATGTACCTTCTTTAGAATTGAGACATGAATTCGTCAAGTAGCAGCGGCAACCTGCAAAACCAGAAATTTCTATAGCAATTGTTTGCAAATTTTCTATGGAATTTAATGGATTTAAAGATGGTTTTGCTTACCTTCATAAGTAGAGGGGACATAGGGACTCAAACTTGGGT
GAACACCATTGTTTAGAGCTTTTTACAGGAGGTGAGATTATTACAACGATAGCCGCAGCAACAACTTTTTATTAGAGAATAAAAAACAGTTCCCTGCCAAGCAGAAGGAACTCTATAAATGGATTCTGCAGCATTGGATTAATTTTGCCCATTTTACAATGAGGCATATCGGCTGCAATTTGAAATCAAGTAGACATCTT
TTTCACTACTCTTCACGGGTAAACATGCTCAACACCAAGTGGCAGACATGCTCAGCATCACTTGACGGCTATGCAGCAACTCTGGACATGCAACAACTTAGAAGGCGGTGGAGACTTGAGCATTGACATTGAAGCTCAATATGCAAGCTCCCTTGCTACTACAAATGCACACCCTGTGAACACACTATCATCCTTTTGTC
ATGAGGCTATTGTTTATTCAGTGGCGGAAAAATTTATGATATAGAATGGAATGCCTTCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGTAACAAGCTCTCTCAAGATGTTTTGCAAGATCATTTTCGTGCATATGTTATTGGTAGCCTTG
CACAAATCATAAAATATTTTGTATTTTTGTTTATTTATTTTCGTGCATATGTTATTTGTAGCCTTGCACAAATCATAAAATATTTTGTCTTTTTGTTTATTTATTTTGATTTTGAGCAGGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCT
TGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAGTTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTC
AATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAATTAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGT
GCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATATTCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGA
TCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATCAAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTA
TTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAA
GCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGgtatgcgaacataatttcttgctcttatatggggtcttgcactctcactcatatgttctgttatgcagaaatcaatgcttgatcatgtgtagaataaaacatgcaaagtgcataaagtacgtcaatgtctattttgaatatt
tctagatgtatatcaacaatattctatgctgtcatgtcggtgtttgtttttaataaggtcattcgattagggctggtctttaaaaatattttatttgccttagatatcttgtcactgagcctttttaagatgtttgtgtagTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTA
CATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGGTGGCTATATTTTTTATGTTCTTCGGCCTTCTACGTTTTTAGGTTAGATAGCTATGATGTCAAACGTTTTATGAGACTTGCAATGAATTACTTGCAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTG
ATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGT
CACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCAC
GATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATACGGAAGTGAAAAGCTTTGGTGCACC
TGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAA
CATAAAATTATGATCCACACAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGG
TAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTC
TGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTT
GTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATTTTTCGTATATAGTCTTGATACTTTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATT
CTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGATTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATAAC
AT
Intron 14 GTAGGCCACT ... TACGACAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.61 | 64 | 77 | 6 |
| A2 | 51.61 | 45 | 48 | 2 |
| A3 | 55.04 | 58 | 71 | 5 |
| A4 | 49.18 | 31 | 30 | 0 |
| A5 | 62.16 | 14 | 23 | 1 |
| A6 | 49.23 | 33 | 32 | 3 |
| A7 | 30.23 | 60 | 26 | 1 |
| A8 | 34.43 | 40 | 21 | 0 |
| A9 | 29.03 | 44 | 18 | 6 |
| A10 | 35.56 | 58 | 32 | 0 |
>TRINITY_DN44051_c0_g1_i11 from sample A9 / Example spliced isoformTGTAAGTTAATATTTTTCTAAATCGTTCACAATTTTCCAAAACATAACCTTATTAACATGTCCAACTTCATTTTTTTTTTCACCATATTTATGGGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAAT
TTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAG
AATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGGTATGTGAACATAATTTCTTGCTCTTATATGGGATCTTCACTCTCACTCATATGTTCTGTTTTGCAGAAATCAATGCTTGATCATGTGTAGAATAAAACATGCAAAATGCATAAAGTACGTCAATGTCTATTTTGAATATTTCTAG
ATGTATATCAACAATATTTTATGCTGTCATGTCGGTGTTTGTTTTTTATAAGGTCATTCGATTAGGGCTGGTCTTTAAAAATATTTTATTTGCCTTAGATATCTTGTCACTGAGCCTTTTTAAGATGTTTGTGTAGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTG
TGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAG
GTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAA
ATCCACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAAGAATAATATTCAATTGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGTCAAGTTGCTTCCTCTGGAATAAT
>TRINITY_DN44051_c0_g1_i27 from sample A9 / Example unspliced isoform:TGTAAGTTAATATTTTTCTAAATCGTTCACAATTTTCCAAAACATAACCTTATTAACATGTCCAACTTCATTTTTTTTTTCACCATATTTATGGGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAAT
TTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAgtaggccactttcgatatcaaaccttttttttctttttttttctttttctttttttttctggggtttcataataccagtcataggcttcaactggattgttttgcatcattggagcctctttttgtggagttgacggaacattctggcactgc
tggcatggagtcgctggaatgtcttagcccacaatacctgaaattgcaattcagaacaaatcatgacgaagggtttggatttggaattggaaatacgacaaagGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATG
Intron 15 GTAAACTAGA ... GGAGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 18 | 13 | 2 |
| A2 | 31.91 | 16 | 6 | 9 |
| A3 | 30 | 7 | 1 | 5 |
| A4 | 30 | 14 | 7 | 5 |
| A5 | 33.33 | 3 | 1 | 2 |
| A6 | 27.45 | 37 | 10 | 18 |
| A7 | 31.68 | 55 | 20 | 31 |
| A8 | 33.33 | 38 | 12 | 26 |
| A9 | 28.07 | 41 | 15 | 17 |
| A10 | 29.55 | 31 | 8 | 18 |
>TRINITY_DN47568_c2_g1_i16 from sample A7 / Example spliced isoformGCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATT
TTGGAGATTTCATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGTTTGTAGCACTATGTTGTAATATCTTTGGGTTGGGATTCCTCTATCTATTTTTGTGTTTTGTTTTGTCTCCAAATGTAACGAGGTTGGGGATTGTTGATAAGATCCACTGCCCAGAA
GATTTTTTACAAGACTTCTGTTGATTGAAGCTTCCAACAAACCCAAGTCTTTTTTATTGGGCGGTAAATGAAAATACTATGTCAGAGAAACGTCGTGAGATGCTTTTGCATTATAAATTGTGATATCAATGGGATATAACAGGACCCATTATATGATCAGGAAGCTTAAGTAGAGTAATATCAAGGGTAGTGTTAGCTTT
TGTTTGACATCTGGAAGAGGCAATCTCGTGAGGTTTGAGCTCTGGACCTCTGATGGCTGCAATTTTGTTATTGGAAGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTG
CTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATG
AAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAA
ACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTA
AACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATT
AACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCAT
TGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGATGGACGTCGTACGTTCAAACTCCC
CCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACT
TGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAA
AGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTA
AAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAAT
GAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATA
>TRINITY_DN47568_c2_g1_i9 from sample A7 / Example unspliced isoform:GCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATT
TTGGAGATTTCATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGTTTGTAGCACTATGTTGTAATATCTTTGGGTTGGGATTCCTCTATCTATTTTTGTGTTTTGTTTTGTCTCCAAATGTAACGAGGTTGGGGATTGTTGATAAGATCCACTGCCCAGAA
GATTTTTTACAAGACTTCTGTTGATTGAAGCTTCCAACAAACCCAAGTCTTTTTTATTGGGCGGTAAATGAAAATACTATGTCAGAGAAACGTCGTGAGATGCTTTTGCATTATAAATTGTGATATCAATGGGATATAACAGGACCCATTATATGATCAGGAAGCTTAAGTAGAGTAATATCAAGGGTAGTGTTAGCTTT
TGTTTGACATCTGGAAGAGGCAATCTCGTGAGGTTTGAGCTCTGGACCTCTGATGGCTGCAATTTTGTTATTGGAAGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTG
CTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATG
AAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAA
ACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTA
AACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATT
AACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCAT
TGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGgtaaactagatatccaaatcgttaa
attttcattcgaaaaactaatatataatattgaaaattaaattaattctcaatttttcaattttataactatgtaatctagtcaataattgccagtattgactgatggcagcatgacgcctaaattgtttacttgtggatcgaggcttttgttagtaaagtacatagaggaaggttcctgatctatttccatgcttatta
tttgggagtttcagATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATT
TACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTA
TTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGC
AAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATA
TTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATA
Intron 16 GTATGTCAGC ... GGAGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.59 | 9 | 37 | 2 |
| A2 | 58.45 | 12.5 | 25 | 9 |
| A3 | 55.53 | 10 | 17 | 5 |
| A4 | 66.94 | 8.5 | 26 | 5 |
| A5 | 56.05 | 4 | 7 | 2 |
| A6 | 51.09 | 24 | 30 | 18 |
| A7 | 58.93 | 41 | 77 | 33 |
| A8 | 61.23 | 31 | 67 | 26 |
| A9 | 54.2 | 24 | 36 | 17 |
| A10 | 59.81 | 17 | 30 | 17 |
>TRINITY_DN47568_c2_g1_i1 from sample A7 / Example spliced isoformTTTCTGATTCAACCACTATGGGTATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGG
GTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGT
CTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGAT
>TRINITY_DN47568_c2_g1_i15 from sample A7 / Example unspliced isoform:GCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATT
TTGGAGATTTCATGACAGCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGTTTGTAGCACTATGTTGTAATATCTTTGGGTTGGGATTCCTCTATCTATTTTTGTGTTTTGTTTTGTCTCCAAATGTAACGAGGTTGGGGATTGTTGATAAGATCCACTGCCCAGAA
GATTTTTTACAAGACTTCTGTTGATTGAAGCTTCCAACAAACCCAAGTCTTTTTTATTGGGCGGTAAATGAAAATACTATGTCAGAGAAACGTCGTGAGATGCTTTTGCATTATAAATTGTGATATCAATGGGATATAACAGGACCCATTATATGATCAGGAAGCTTAAGTAGAGTAATATCAAGGGTAGTGTTAGCTTT
TGTTTGACATCTGGAAGAGGCAATCTCGTGAGGTTTGAGCTCTGGACCTCTGATGGCTGCAATTTTGTTATTGGAAGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTG
CTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATG
AAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAA
ACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTA
AACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATT
AACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCAT
TGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTgtatgtcagcctccatactatataactatgaaattccatttttaccacagcttacaaatcatattgtttacataaacataaaattatgatccacacagcatgacgcctaaattgtttacttgt
ggatcgaggcttttgttagtaaagtacatagaggaaggttcctgatctatttccatgcttattatttgggagtttcagATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGG
TTGCCTCTACTTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCA
CGTATTTGAAGGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTG
GTTCTATTTTACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAA
TATATTCCGGTTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTG
CAATAAGTAGGCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATA
Intron 17 GTATATTTCT ... TTCATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.57 | 19.5 | 11.9 | 44 |
| A2 | 82.94 | 9 | 16.6 | 37 |
| A3 | 46.16 | 13 | 5.2 | 11 |
| A4 | 42.58 | 22 | 3.9 | 16 |
| A5 | 83.37 | 3.5 | 4.7 | 17 |
| A6 | 61.11 | 9 | 7 | 13 |
| A7 | 58.34 | 25.5 | 7.2 | 34 |
| A8 | 58.94 | 13.5 | 4.9 | 18 |
| A9 | 62.93 | 12 | 10 | 19 |
| A10 | 75.45 | 14 | 17 | 37 |
>TRINITY_DN48449_c0_g1_i9 from sample A10 / Example spliced isoformTTTGAAATCTATAATGTTAATTTAATTATTTTATTTTATTGTAATTATTTAATAAAATATATTAATACTCGCTCAAGTTTTATTGGATCAAAGTCATTGATTAGATTAATATTATCATTCTCAAGGATTACAAAAATTAGAATTACAACTTACTTTAGCTATACTTTTACATATACAGATATTTTTTCTTTAGTGGACTC
TCAACTTTACCCAACCTGTACACACTAACCGGGCTGCAATTTGAAATCAAGTAGACATCTTTTTCACTACTCTTCACGGGTAAACATGCTCAACACCAAGTAGCAAACATGCTCAGCATCACTTGACGGCTATGCAGCAACTCTGGACATGCAACAACTTAGAAGGCGGTGGAGACTTGAGCATTGACATTGAAGCTCAA
TATGCAAGCTCCCTTGCTACTACAAATGCACACCCTGTGAACACACTATCATCCTTTTGTCATGAGGCTATTGTTTATTCAGTGGCGGAAAAATTTATGATATAGAATGGAATGCCTTCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGT
CAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATAC
AAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACC
CGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCA
>TRINITY_DN48449_c0_g1_i15 from sample A10 / Example unspliced isoform:GGGTTCTTGGCGAGAAAATGGGCAATTTCTACTGAGCAGAGGGAGATTGCGTGGGCGTGTCGGGTTCAGTGGCTGGGACTTCTTTAGGCACCGGCGTCTGCATTAATTTGGAGTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCG
AACTTCAATGgtatatttctgtatccgaaaattcttgtgatgagggtaccatggttccatgaccgaaataaatagcgcaggcttcccgtgagtttgtggtaggtagtgcaagctctttgaaattgctatgcaagttcgaagctcagtttgggaagaatcagtgaaggagctgcagtgttttggatcggtgtcgattgtac
tggccattggacaagttgtttccaatatgatattcaatgttggccaagggagttgttaaaaaaaattgcaaccctgcaatttatgaagcaattagtgaggcatatgcattttctatcattgaattagtactttctttagtcaatggattgatggccaagttccaagaagatttttatttggagattctcttgatcacatt
gcattttctttttacaacctaatgctctaagatgtgcttgtttattctctttgttcacagcttaatgaacctgtgctggtttttttctatattcacagcttaatgctctatattggcataagtttgcagattttcatttcaatttttctcttgttcactgtacattttctttctctggttttaaggctctaaattgttct
agattttatcttgttcatatctttaaagctctagatcatgctatgtttgtggattttctccagttaggcctggatgtcattatttttgtatcaaataagctgttttttggactgtgtttttgagacgaatgttgtatacatcatctctgatcaaataatgcctgcacaccttcaagtttggtattagttatccgctgtag
aatgattcaggttcctttatgacatttgctctctattcttcttacagaccaatgagatagatattaatgtcaacttttcatttcagGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGT
AATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCA
TCGTCTATTCCACCAAGTCCCATAGAGCCACCCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCA
Intron 18 GTATGCTTCG ... TTTGTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.21 | 23.4 | 11 | 38 |
| A2 | 61.24 | 13 | 10 | 28.4 |
| A3 | 80.86 | 5.4 | 22 | 23.6 |
| A4 | 78.21 | 8.8 | 27 | 36 |
| A5 | 80.83 | 3 | 7.4 | 17.6 |
| A6 | 58.72 | 7.4 | 8 | 12.4 |
| A7 | 54.34 | 21.6 | 18 | 33 |
| A8 | 51.3 | 13 | 7 | 20.4 |
| A9 | 57.89 | 12 | 13 | 20 |
| A10 | 48.11 | 27.4 | 12 | 38.8 |
>TRINITY_DN44651_c0_g1_i11 from sample A6 / Example spliced isoformGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTA
TACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCC
ACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCC
CAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCCACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAAGAATAATATTCAATTGGACCTGATGCCTA
ATTTGCCGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAATAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAAT
AAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGAC
>TRINITY_DN44651_c0_g1_i5 from sample A6 / Example unspliced isoform:GTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGgtatgcttcgatcctgtacataccttcaataccctttttcaaaactaaaaacgcgatccagggcagcatgaatatgtttttccagccaaaagcattgcggcggcaattgctatatcttagaaccaactggattttggagattt
catgacagcactttctctattacatattgcctaggcttcaatatcaagctattcggcaatttcagagcactggtttgtagcactatgttgtaatatctttgggttgggattcctctatctatttttgtgttttgttttgtctccaaatgtaacgaggttggggattgttgataagatccactgcccagaagattttttac
aagacttctgttgattgaagcttccaacaaacccaagtcttttttattgggcggtaaatgaaaatactatgtcagagaaacgtcgtgagatgcttttgcattataaattgtgatatcaatgggatataacaggacccattatatgatcaggaagcttaagtagagtaatatcaagggtagtgttagcttttgtttgacat
ctggaagaggcaatctcgtgaggtttgagctctggacctctgatggctgcaattttgttattggaaggcactggggtatcgaatggtcttgcccccaaagctgtccagacaaagcctaagaatcaaggagttgttaagagagtatcatgggctcccgagtacaatttgtgccagGTGAGACTGTTTCTTGCTGAAGATGC
CCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGTTTGTCATGAAGGATTCAT
GGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACT
TGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAAC
AGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATCCACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCC
ATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAATAATTGGAAATAATAGGAGCAGTCTAGTTACATGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGAT
GGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGCATGACGCCTAAATTGTTTACTTGTGGATCGAGGC
TTTTGTTAGTAAAGTACATAGAGGAAGGTTCCTGATCTATTTCCATGCTTATTATTTGGGAGTTTCAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTAC
TTTAAAGCCTATGGATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAA
GGACGCTGCTGTGTGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTT
ACACAGGTAATTTTCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGG
TTCGAAGCAAATTCTTCAATATTATTTGAAGACCTCGAAGCAAATTCTTCAATATTATTTGAAGACCTTGTTATTGATATCAATTCTTACAATGAATAGCCCATTTCTTGTAGATAGTTTGCAGTGTGGAGGATGAGATGAACAGGTTTTCATTTGGTCAACCTCTTACAGAACGGTTGTCATCTGCTTGCAATAAGTAG
GCATTTTATGGGGTTTACAACCATTTTCTTAAACTATTCTAATAACATGGTTCTACTGGTTATTTAATATTAGTGTTTACCTTGACTGCTG
Intron 19 GTATGTGAAC ... GTTTGTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.64 | 50.3 | 30.9 | 19.8 |
| A2 | 24.64 | 20.7 | 1 | 12.2 |
| A3 | 49.93 | 15.2 | 7.9 | 22 |
| A4 | 32.95 | 36.1 | 20.1 | 15 |
| A5 | 24.58 | 15.7 | 6.9 | 3.3 |
| A6 | 28.3 | 32 | 11.1 | 14 |
| A7 | 23.52 | 48.4 | 19.8 | 9.7 |
| A8 | 31.08 | 38.1 | 18.8 | 15.3 |
| A9 | 19.56 | 58 | 9.9 | 18 |
| A10 | 27.53 | 49 | 20 | 16.9 |
>TRINITY_DN129438_c0_g1_i3 from sample A1 / Example spliced isoformCTTTTAAGCAGTAGCCTAGAAACTTCTTCATATACAACCGAGACATATTAGCCCTTGTATACCTGGTTGCAGTCGCAAAGGTAACAAGCTCTCTCAAGATGTTTTGCAAGATCATTTTCGTGCATATGTTATTGGTAGCCTTGCACAAATCATAAAATATTTTGTATTTTTGTTTATTTATTTTCGTGCATATGTTATTT
GTAGCCTTGCACAAATCATAAAATATTTTGTCTTTTTGTTTATTTATTTTGATTTTGAGCAGGTCAGTCGTCGATTGAGAATAGCCGCCTCTGCTATTACGCTACTCGAACTTCAATGGTATATTTCTGTATCCGAAAATTCTTGTGATGAGGGTACCATGGTTCCATGACCGAAATAAATAGCGCAGGCTTCCCGTGAG
TTTGTGGTAGGTAGTGCAAGCTCTTTGAAATTGCTATGCAAGTTCGAAGCTCAGTTTGGGAAGAATCAGTGAAGGAGCTGCAGTGTTTTGGATCGGTGTCGATTGTACTGGCCATTGGACAAGTTGTTTCCAATATGATATTCAATGTTGGCCAAGGGAGTTGTTAAAAAAAATTGCAACCCTGCAATTTATGAAGCAAT
TAGTGAGGCATATGCATTTTCTATCATTGAATTAGTACTTTCTTTAGTCAATGGATTGATGGCCAAGTTCCAAGAAGATTTTTATTTGGAGATTCTCTTGATCACATTGCATTTTCTTTTTACAACCTAATGCTCTAAGATGTGCTTGTTTATTCTCTTTGTTCACAGCTTAATGAACCTGTGCTGGTTTTTTTCTATAT
TCACAGCTTAATGCTCTATATTGGCATAAGTTTGCAGATTTTCATTTCAATTTTTCTCTTGTTCACTGTACATTTTCTTTCTCTGGTTTTAAGGCTCTAAATTGTTCTAGATTTTATCTTGTTCATATCTTTAAAGCTCTAGATCATGCTATGTTTGTGGATTTTCTCCAGTTAGGCCTGGATGTCATTATTTTTGTATC
AAATAAGCTGTTTTTTGGACTGTGTTTTTGAGACGAATGTTGTATACATCATCTCTGATCAAATAATGCCTGCACACCTTCAAGTTTGGTATTAGTTATCCGCTGTAGAATGATTCAGGTTCCTTTATGACATTTGCTCTCTATTCTTCTTACAGACCAATGAGATAGATATTAATGTCAACTTTTCATTTCAGGTGAGA
CTATTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAG
GTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGAGAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGTCCCATAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGA
AGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAATATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTA
TCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTGATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATC
AGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCTCTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCC
TCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTTACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGGTAAACTAGATATCC
AAATCGTTAAATTTTCATTCGAAAAACTAATATATAATATTGAAAATTAAATTAATTCTCAATTTTTCAATTTTATAACTATGTAATCTAGTCAATAATTGCCAGTATTGACTGATGGCAGCATGACGCCTAAATTGTTTACTTGTGGGTCGAGGCTTTTGTTAGTAAAGTACATAGAGGAAGGTTCCTGATCTATTTCC
A
>TRINITY_DN129438_c0_g1_i6 from sample A1 / Example unspliced isoform:GTCGAACCTTTTCATGGGCGTGAATCCAGGAAGCCCAATCCAGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCTTGGCTGACCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGCATATGGTTCTGGATTTGAAGGTAATCATCTGTTGGGCTTTGGAGACAACTATACAAAGCAGAATAT
ACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGTCCCCCCAGGgtatgtgaacataatttcttgctcttatatgggatcttcactctcactcatatgttctgttttgcagaaatcaatgcttgatcatgtgtagtataaaacatgcaaaatgcataaagtacgtcaatgtctattttgaatatttctagatgta
tatcaacaatattttatgctgtcatgtcggtgtttgttttttataaggtcattcgattagggctggtctttaaaaatattttatttgccttagatatcttgtcactgagcctttttaagatgtttgtgtagTTTGTCATGAAGGATTCATGGCAAGTAGTTGTTGGGATGAAAGTTTAGAAGTTAAAGTACATTGTGAGA
GAGAAGTCCGGAATTTGGAGGCTGTATACCCACGCCCATCGTCTATTCCACCAAGGTGGCTATATTTTTTATGTTCTTCGGCCTTCTATGTTTTTAGGTTAGATAGCTATGATGTCAAACGTTTTATGAGAC
Intron 20 GTGGCTATAT ... TTACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.8 | 52 | 4 | 17 |
| A2 | 22.62 | 32.5 | 7 | 12 |
| A3 | 22.5 | 31 | 5 | 13 |
| A4 | 21.57 | 40 | 6 | 16 |
| A5 | 14.29 | 15 | 3 | 2 |
| A6 | 20.45 | 35 | 3 | 15 |
| A7 | 10.49 | 64 | 4 | 11 |
| A8 | 13.02 | 63.5 | 9 | 10 |
| A9 | 13.99 | 61.5 | 9 | 11 |
| A10 | 12.25 | 64.5 | 4 | 14 |
>TRINITY_DN108313_c0_g1_i6 from sample A4 / Example spliced isoformGTCTTTACAAATATTTTCTTTCCCTTAGAGATCTTGTCACTGAGCCTTTTTAAGATGTTTGTGTAGTTTGTCATGAATCTTTCATGGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGA
GCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGTAGGTGATGCTTATTGTCATCTCCGTTCCACTTTATTATTTGCTCTAGG
>TRINITY_DN108313_c0_g1_i4 from sample A4 / Example unspliced isoform:GGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTATGCTTCGATCCTGTACATACCTTCAATACCCTTTTTCAAAACTAAAAACGCGATCCAGGGCAGCATGAATATGTTTTTCCAGCCAAAAGCATTGCGGCGGCAATTGCTATATCTTAGAACCAACTGGATTTTGGAGATTTCATGACA
GCACTTTCTCTATTACATATTGCCTAGGCTTCAATATCAAGCTATTCGGCAATTTCAGAGCACTGGTTTGTAGCACTATGTTGTAATATCTTTGGGTTGGGATTCCTCTATCTATTTTTGTGTTTTGTTTTGTCTCCAAATGTAACGAGGTTGGGGATTGTTGATAAGATCCACTGCCCAGAAGATTTTTTACAAGACTT
CTGTTGATTGAAGCTTCCAACAAACCCAAGTCTTTTTTATTGGGCGGTAAATGAAAATACTATGTCAGAGAAACGTCGTGAGATGCTTTTGCATTATAAATTGTGATATCAATGGGATATAACAGGACCCATTATATGATCAGGAAGCTTAAGTAGAGTAATATCAAGGGTAGTGTTAGCTTTTGTTTGACATCTGGAAG
AGGCAATCTCGTGAGGTTTGAGCTCTGGACCTCTGATGGCTGCAATTTTGTTATTGGAAGGCACTGGGGTATCGAATGGTCTTGCCCCCAAAGCTGTCCAGACAAAGCCTAAGAATCAAGGAGTTGTTAAGAGAGTATCATGGGCTCCCGAGTACAATTTGTGCCAGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTT
CAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTTTCATGGCAAGT
AGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGgtggctatattttttatgttcttaggccttctatgtttttaggttagatagctatgatgtcaaacgttttatgagacttgcatgaattacttgcagTCCCA
TAGAGCCACTCGAGCTGCAGGAGGACTATAGTGATTCTGATACTCCTATGATTCCATTGATTCCCGTGGAAGATGATTAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCATAATATAATAGAAATACAACCAAATTCTACAGGGAAT
ATCATCCCAAGGTGGCAACTCTGTTTCTGTGGTCACTCCTAGTGTTGATCAGCAAAGACAGTCATCTTTATCCATATCTAAACCTGCAACAGAACCTGACATTACTGCAGCTGCTGCTTTTGTTGCAATAGCAAAATACACAAAGAATTGAAACATTGACATCTCAGCTCAAAAGAAATAATAATATTCAAATGGACCTG
ATGCCTAATTTGCAGGCAATTGACAGCAAGCACGATGCACCTAATACTCCTTGCAATGTTGGCCATGATCAGAGCGTATTAACTATGTCCATACTGCAAGGAGCATGCCAAGTTGCTTCCTCTGGAGTAATTGGAAATAATAGGAGCAGTCTAGTTACAAGTGAAATGGCATGTGGCAATTTTCAAGGGGCTTCACATCT
CTGTAATAAGGAAGTGAAAAGCTTTGGTGCACCTGTAGCAGTGGCACAGACTTCTATATCTATGGCTTCCTCCTCTCCATTGCCTCCGATGGCTGGACTTGCAAATTCACATCTTTCGTCAATGACTGCGACAGTTTCTGATTCAACCACTATGGGTGTATGTCAGCCTCCATACTATATAACTATGAAATTCCATTTTT
ACCACAGCTTACAAATCATATTGTTTACATAAACATAAAATTATGATCCACACAGATGGACGTCGTACGTTCAAACTCCCCCTCGTGGAAGGAGATGGCAAGGATGCCTCCATCCATGATCAAGGAATTTGAACAGCTTCCATTTGACATATGTTTTGACTGGGTGGGACTGGACGGTTGCCTCTACTTTAAAGCCTATG
GATATTCAACAGCCAATGATACCGTTTTGAGGGTAGGTATTTACAACATCAACGAAAATTCATGGAGTTGGCTTCCCACTTGTTCCATGCCACTAGGGCCTGCTATTCTCGTCTCACGGCTTTCAGGCCCAGGCTTCACAGCTTTCATTGCTCCACAGCTTTCAGGCCCAGGCATCACGTATTTGAAGGACGCTGCTGTG
TGATGGTTTCTACTATAATTCTGTCATTATGTCTGTGTTTATTTTATTGCTCCACGAGAGGGTAACTCTGGCGATCCTAAAGTTTGATCACCATAGCTTTCCTGCAAAATCAATCACTTGTTAGTGGGATGGAATCAATCACTTGTTAGTGGGATGGCTGGATCCTGTTAAGGTCTGGTTCTATTTTACACAGGTAATTT
TCTTTTGGCGTATTAAACTTTCCTGTGTAGGTTGTCTCTGCAAATGCACTATTTTGTGCTAGATTTGTGGGTTTTCATTAAAAAAAATATGTTGATAAACATCTTTCGTGTATAGTCTTGATACTCTATCCTTGATACTCTATCCGGTGAAAATAAAATTGCATATTTTCATTGGAATATATTCCGGT
Intron 21 GCACTGGGGT ... TTTGTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.82 | 21 | 4 | 34 |
| A2 | 76.67 | 7 | 9 | 23 |
| A3 | 78.57 | 6 | 6 | 22 |
| A4 | 77.27 | 10 | 12 | 34 |
| A5 | 82.64 | 3 | 10 | 14 |
| A6 | 66.67 | 5 | 1 | 10 |
| A7 | 63.27 | 18 | 7 | 31 |
| A8 | 61.76 | 13 | 5 | 21 |
| A9 | 63.64 | 12 | 8.5 | 21 |
| A10 | 58.21 | 28 | 9 | 39 |
>TRINITY_DN47568_c2_g1_i17 from sample A7 / Example spliced isoformGCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGGTGAGACTGTTTCTTGCTGAAGATGCCCCATTTCAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTG
GAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTTTCATGGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGT
CCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGACTTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGG
>TRINITY_DN47568_c2_g1_i4 from sample A7 / Example unspliced isoform:GCGGTAGGTAGTGGGCGTGAGGTGCAGCCGGGTATGCCGTCGAGACCATTTCCCTCTCATGATTACGgcactggggtatcgaatggtcttgcccccaaagctgtccagacaaagcctaagaatcaaggagttgttaagagagtatcatgggctcccgagtacaatttgtgccagGTGAGACTGTTTCTTGCTGAAGATGC
CCCATTTCAGTCTGGCCTGGCTGATCAAGACCATCTACAGGCAAAACAGTCTCGGTTGTGGCATGGATATGGTTCTGGATCTGAAGGTAATCAGCTGCTGGGCTTTGGAGACAACTATACAAAGCAGAATATACAGGAAGATTCAATTGTTCCTGAGACCACCTGGTGTTGCCCCCCCAGGTTTGTCATGAATCTTTCAT
GGCAAGTAGTTGCTGGGGATGAAAGTTTAGAAGTTAAAGTACAGTGTGAGCGAGAAGTCCGGAATTTGGAGGCTATATACCCACGCCCATCGTCCATTCCACCAAGTCCCATAGAGCCACTGGAGCTGCAGGAGGACTATTGTGATTCTGATACTCCTATCATTCCATTGATTCCTGTGGAAGATGATGAAACTGGAGAC
TTGAATGAAGTGCCTTCATCGCAAGATTTTGGAGAGTTGGGAATAGGTTCATATGAGCCATTCAGGATTATGCAGAATATGATAGAAATACAACCAAATTCTACAGG