sp|Q8LJW3|ACR4_ARATH ----> ACT domain-containing protein ACR4
Intron 1 GTAATGTTTG ... CTTTATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.75 | 46 | 27 | 22 |
| A2 | 44.66 | 57 | 61 | 31 |
| A3 | 42.74 | 71 | 58 | 48 |
| A4 | 42.68 | 45 | 32 | 35 |
| A5 | 54.17 | 22 | 25 | 27 |
| A6 | 35.45 | 71 | 44 | 34 |
| A7 | 50.14 | 91 | 97 | 86 |
| A8 | 44.59 | 41 | 32 | 34 |
| A9 | 39.5 | 108 | 87 | 54 |
| A10 | 48.57 | 126 | 120 | 118 |
>TRINITY_DN106422_c1_g1_i8 from sample A3 / Example spliced isoformTAAGGACAAGATTAAAAATGGGACAAAAATATTAACTGATCGAGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGTGGCAGTGCAGAATCTGAGA
AAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGAT
GCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATA
TATACAACAGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGG
TTGCAGCTGTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCGGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTAT
GAAAGAGCACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACT
TGATGCTTATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCT
CAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGGCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTG
GGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTC
CATTTACTGTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTT
AACACATGTTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAGTGCAACAAGTTTTAACACATGTTT
>TRINITY_DN106422_c1_g1_i1 from sample A3 / Example unspliced isoform:TAAGGACAAGATTAAAAATGGGACAAAAATATTAACTGATCGAGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGgtaatgtttgaaatggtctt
tcactttataaagTGGCAGTGCAGAATCTGAGAAAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGA
ATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGG
AAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTG
TTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCGGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGT
CTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGT
TGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTG
ATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGGCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCT
CCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACAT
TCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAG
AAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAGTGCAACAAGTTTTAACACATGTTT
Intron 2 GTAATGTTTG ... GGCAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.34 | 49 | 27 | 24.3 |
| A2 | 43.48 | 63 | 61 | 36 |
| A3 | 41.56 | 79 | 58 | 54.5 |
| A4 | 44.47 | 43 | 32 | 37 |
| A5 | 61.44 | 17 | 25.4 | 28.8 |
| A6 | 34.29 | 76 | 44 | 35.5 |
| A7 | 51.24 | 90 | 97 | 92.4 |
| A8 | 47.61 | 38 | 32 | 37.2 |
| A9 | 40.45 | 107 | 87 | 58.5 |
| A10 | 50.21 | 126 | 120 | 134.5 |
>TRINITY_DN115482_c0_g1_i6 from sample A1 / Example spliced isoformGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGAATCTGAGAAAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACC
CACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATT
CTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATC
CGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACC
CCGCAAGGCTTTCAAAGATCAAGCAACAACTCTGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTA
GTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTC
AGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCC
ATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACA
AAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTG
ATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAG
GACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAG
>TRINITY_DN115482_c0_g1_i4 from sample A1 / Example unspliced isoform:GGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGgtaatgtttgaaatggtctttcactttataaagtggcagtgcagAATCTGAGAAAGAGAGGAG
GTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGA
ATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAG
TCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGT
GGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCTGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCAC
ATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTAT
CAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAG
AGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCT
TCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGT
TTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTT
TACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAG
Intron 3 GTATTTCTAG ... CTGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.74 | 73 | 24 | 13.1 |
| A2 | 22.55 | 79 | 23 | 12.9 |
| A3 | 25.97 | 114 | 40 | 8.3 |
| A4 | 27.2 | 91 | 34 | 14.4 |
| A5 | 15.87 | 53 | 10 | 1.7 |
| A6 | 20.15 | 107 | 27 | 11.1 |
| A7 | 20.53 | 240 | 62 | 18.3 |
| A8 | 20.49 | 97 | 25 | 12 |
| A9 | 18.52 | 176 | 40 | 17.2 |
| A10 | 21.89 | 214.1 | 60 | 27.8 |
>TRINITY_DN115482_c0_g1_i6 from sample A1 / Example spliced isoformGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGAATCTGAGAAAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACC
CACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATT
CTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATC
CGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACC
CCGCAAGGCTTTCAAAGATCAAGCAACAACTCTGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTA
GTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTC
AGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCC
ATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACA
AAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTG
ATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAG
GACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAG
>TRINITY_DN115482_c0_g1_i7 from sample A1 / Example unspliced isoform:GGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGGTGAGATTCTATAAACTCTGTCGAGTAGGAAAGGGTAGAATAAATAATCATAGTCAAAGCCCA
GGATGGGACTTTAATTCAATTAGGGTTAGGGTTTTGGGTATGGATGCAGAGTTGTAATTGGGTCTTTATTAGCTGGAAGGTACCTGAAATTGCAGTGTGAACGGAAAATGTACTTTTGAGGATGTTTTTTTTGGGACAGGTAATGTTTGAAATGGTCTTTCACTTTATAAAGTGGCAGTGCAGAATCTGAGAAAGAGAGG
AGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGA
GAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAAC
AGgtatttctagatctctttcctgccgtaaacagtttgggagagtgcccatttctattcaggaatccctttttaattctacctattctgattgcagTCCCTGGGAACTAATGCTTG
Intron 4 GTGAGATTCT ... GGCAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.11 | 49 | 29 | 54.9 |
| A2 | 46.3 | 63 | 47 | 61.7 |
| A3 | 46.69 | 79 | 55 | 83.4 |
| A4 | 53.92 | 43 | 37 | 63.7 |
| A5 | 65.28 | 17 | 17 | 46.9 |
| A6 | 38.85 | 76 | 39 | 57.6 |
| A7 | 54.12 | 90 | 72 | 140.4 |
| A8 | 55.47 | 38 | 37 | 57.7 |
| A9 | 50.98 | 107 | 106 | 116.6 |
| A10 | 52.34 | 126 | 73 | 203.9 |
>TRINITY_DN115482_c0_g1_i6 from sample A1 / Example spliced isoformGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGAATCTGAGAAAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACC
CACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATT
CTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATC
CGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACC
CCGCAAGGCTTTCAAAGATCAAGCAACAACTCTGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTA
GTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTC
AGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCC
ATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACA
AAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTG
ATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAG
GACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAG
>TRINITY_DN115482_c0_g1_i1 from sample A1 / Example unspliced isoform:GGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGgtgagattctataaactctgtcgagtaggaaagggtagaataaataatcatagtcaaagccca
ggatgggactttaattcaattagggttagggttttgggtatggatgcagagttgtaattgggtctttattagctggaaggtacctgaaattgcagtgtgaacggaaaatgtacttttgaggatgttttttttgggacaggtaatgtttgaaatggtctttcactttataaagtggcagtgcagAATCTGAGAAAGAGAGG
AGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGA
GAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAAC
AGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCT
GTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCTGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGC
ACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTT
ATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACT
AGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCT
CTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACT
GTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATG
TTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAG
Intron 5 GTGAGATTCT ... CTTTATAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.31 | 46 | 29 | 57 |
| A2 | 48.18 | 57 | 47 | 59 |
| A3 | 48.36 | 71 | 55 | 78 |
| A4 | 52.13 | 45 | 37 | 61 |
| A5 | 58.49 | 22 | 17 | 45 |
| A6 | 40.08 | 71 | 39 | 56 |
| A7 | 54.39 | 91 | 72 | 145 |
| A8 | 52.6 | 41 | 37 | 54 |
| A9 | 50.34 | 108 | 106 | 113 |
| A10 | 50.3 | 126 | 73 | 182 |
>TRINITY_DN106422_c1_g1_i8 from sample A3 / Example spliced isoformTAAGGACAAGATTAAAAATGGGACAAAAATATTAACTGATCGAGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGTGGCAGTGCAGAATCTGAGA
AAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGAT
GCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATA
TATACAACAGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGG
TTGCAGCTGTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCGGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTAT
GAAAGAGCACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACT
TGATGCTTATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCT
CAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGGCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTG
GGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTC
CATTTACTGTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTT
AACACATGTTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAGTGCAACAAGTTTTAACACATGTTT
>TRINITY_DN106422_c1_g1_i3 from sample A3 / Example unspliced isoform:TAAGGACAAGATTAAAAATGGGACAAAAATATTAACTGATCGAGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGgtgagattctataaactctg
tcgagtaggaaagggtagaataaataatcatagtcaaagcccaggatgggactttaattcaattagggttagggttttgggtatggatgcagagttgtaattgggtctttattagctggaaggtacctgaaattgcagtgtgaacggaaaatgtacttttgaggatgttttttttgggacaggtaatgtttgaaatggtc
tttcactttataaagTGGCAGTGCAGAATCTGAGAAAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTA
GAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGAT
GGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAGTCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGT
TGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGTGGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCGGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGC
GTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCACATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATAT
GTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTATCAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGTATGTCACATTATTCATATAAACATTCGGAGATGAAAGAGATATAT
TCTGAGATTTTAGGGATATATACTCACAGACAGATAGACAAACAGACAGACTGACAGATGGTTAGGTATGTCACATTATTCATATA
Intron 6 GTGAGATTCT ... TTTGGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.29 | 27 | 29 | 53 |
| A2 | 48.09 | 61 | 47 | 66 |
| A3 | 49.57 | 58 | 55 | 59 |
| A4 | 59.75 | 32 | 37 | 58 |
| A5 | 53.89 | 25.3 | 17 | 42 |
| A6 | 50 | 44 | 39 | 49 |
| A7 | 51.38 | 97 | 72 | 133 |
| A8 | 53.62 | 32 | 37 | 37 |
| A9 | 55.95 | 87 | 106 | 115 |
| A10 | 49.58 | 120 | 73 | 163 |
>TRINITY_DN115482_c0_g1_i4 from sample A1 / Example spliced isoformGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGGTAATGTTTGAAATGGTCTTTCACTTTATAAAGTGGCAGTGCAGAATCTGAGAAAGAGAGGAG
GTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGA
ATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAG
TCCCTGGGAACTAATGCTTGCCTCTTACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGT
GGTATATGTTACCGATGAATTGACTCTGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCTGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCAC
ATAATGGTAGTGCAGAGTCCATGAATGATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTAT
CAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAG
AGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCT
TCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATCTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGT
TTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTT
TACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAG
>TRINITY_DN115482_c0_g1_i7 from sample A1 / Example unspliced isoform:GGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGgtgagattctataaactctgtcgagtaggaaagggtagaataaataatcatagtcaaagccca
ggatgggactttaattcaattagggttagggttttgggtatggatgcagagttgtaattgggtctttattagctggaaggtacctgaaattgcagtgtgaacggaaaatgtacttttgaggatgttttttttgggacagGTAATGTTTGAAATGGTCTTTCACTTTATAAAGTGGCAGTGCAGAATCTGAGAAAGAGAGG
AGGTGGTTCAATTGAGTTGAATTTAAAGGAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGA
GAATGCAACACTAGTGAAGGTCGACAGTGCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAAC
AGGTATTTCTAGATCTCTTTCCTGCCGTAAACAGTTTGGGAGAGTGCCCATTTCTATTCAGGAATCCCTTTTTAATTCTACCTATTCTGATTGCAGTCCCTGGGAACTAATGCTTG
Intron 7 GTATGTCACA ... CAATCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.29 | 65 | 17.9 | 22 |
| A2 | 25.4 | 47 | 19.6 | 16 |
| A3 | 16.18 | 57 | 16.7 | 11 |
| A4 | 23.4 | 72 | 17.2 | 22 |
| A5 | 25 | 30 | 2.7 | 10 |
| A6 | 28.53 | 163 | 53.1 | 65.1 |
| A7 | 28.52 | 247 | 69.3 | 98.5 |
| A8 | 27.04 | 259 | 79.8 | 96 |
| A9 | 26.57 | 257 | 63.4 | 93 |
| A10 | 26.27 | 261 | 87.6 | 93 |
>TRINITY_DN40483_c0_g1_i4 from sample A6 / Example spliced isoformAAAATATTAACTGATCGAGGCGTATGATAGTTAAACACCATCTCTCGGCATGTGGGGGATTCTGCCCACCATTGAATGTGCACTCAGCCCTAGTTAGTTGGGATCAGCCATGGCAGGAAGGCCACATGTTCCTTCAAGTTGTGAGGAGAGGAGAGAATCTGAGAAAGAGAGGAGGTGGTTCAATTGAGTTGAATTTAAAG
GAATCAAAGCAGAAAACCCACAGCGCCAAAACAAAGAGAATAAGCCTGCGTTTCGGTTCTTAATCTCAGCAGAAATGCATTGGATGACTTCTCTGGATGTTGATGATGAATATGAGAAACTGATCATTAGAATGAATCCTCCAAGGGTTTCGATTGACAACGATGCTTGTGAGAATGCAACACTAGTGAAGGTCGACAGT
GCGAACAAACATGGTATTCTTCTGGAAGTGGTACAAGTGCTGACAGATTTGAATCTTACGATTGCCAAGGCTTACATCTCTTCTGACGGAGGATGGTTCATGGATGTATTCCATGTACTCGACAAAGATGGAAACAAAGTTAGAGATGAACAGGTTATTGAATATATACAACAGTCCCTGGGAACTAATGCTTGCCTCTT
ACCTTCAATGAGGAGATCCGTTGGAGTAAAGGCTGCTGCTGAACATACAGCAATCGAATTAACAGCAAGAGATAGGCCAGGTTTGCTCTCTGAAGTGTTTGCGGTTCTCACAGACCTTAACTGTAATGTTGTTGCGGCTGAGGTCTGGACTCACAACACAAGGGTTGCAGCTGTGGTATATGTTACCGATGAACTGACTC
TGGCTCCAATTGATGACCCCGCAAGGCTTTCAAAGATCAAGCAACAACTCGGCAGTGTTCTCAAGGGGGATAATGACAAGCGGGGTGCCAAGACTGCTGTTTCTATGGTTATTACTCATACAGAAAGGCGTCTGCATCAAATGATGTTCGCAGATCGTGACTATGAAAGAGCACATAATGGTAGTGCAGAGTCCATGAAT
GATCAACTCAGGCCTTTAGTGACTCTGCAGAACTGTGTCGAGAGAGGTTATTCAGTTATTAATGTCAAGTGCAAAGACCGGCCAAAGCTTCTCTTTGACACTGTATGCACTTTAACTGACATGCAATATGTTGTTTTTCATGCCACCATTGATGCCGAAGGACTTGATGCTTATCAGGAGTATTACATCAGACATATAGA
TGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGGGGCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATA
AAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTGGGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTC
CACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATTTCCAGGAGTTCAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGTTTGTTGTCTGACTGACCATGGAAGGA
AAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAAGTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTTTACTTGATATCAGTTCCTGTTATGAG
ATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTCGTTTACCTATTAGTGCAACAAGTTTTAACACATGTTTACTTGCTATCAGTTCATATTAATATTCTTCTCATTCTAGGAGAAAATGTAAGCTGTCTTAAGTTGTCACAATATATTTT
TCCTTTTGAAATGAACTTCAAA
>TRINITY_DN40483_c0_g1_i3 from sample A6 / Example unspliced isoform:GCTGCTCTGTTTTGGATGTGAAGGAGTATTACATCAGACATATAGATGGTTGCCCAGTAAACTCAGAAGCAGAACGGCGGCGAGTAATCCACTGTTTGGAGGCAGCCATAGAAAGAAGAGTCTCTGAGgtatgtcacattattcatataaacattcggagatgatagagatatattctgagattttagggatatatactc
acagacagatagacaaacagacagactgacagatggttaggtagatatagagatacacacacagatagacagatagatagggatatacacactgactcacagattagggatatacacacacagataaacagatagatagggacatacagactgactcacagatagatatgtagatagataaattctgactcacagataga
tatgtagatagataaattgtggcctttttaggttggttcccttgagttgtaaacttggcaaactacacatatgggtgattgtatagatagagataaattgtgggctttttaggtgggttcccatgagttgtaaaacttggcaaaatgcacatatggctggttgatgatgagaagtgtttgatatgatccaatctgcagGG
GCTGAGACTTGAATTGTGCAGCGGTGATCGTATTGGTCTTCTCTCTGATGTCACTCGGATATTTCGTGAAAATGGGCTCTCAGTCACTAGAGCAGAAGTCAGCACCAGAGGGGATAAAGCAATCAATGCCTTCCATGTTACAGATGCAGCAGGAAATCCTGTCAATGCCAGAACTATTGAAGCTGTTCGCAGTGAAATTG
GGCAGACAATACTCGAAGTGAAAGAAAGCTCTATATATTCAAAATCTCCTCCGGAGGAAACTGGTGGCAGGTTTTCGCTGGGTAACCTCTTCAGGTCCAGCTCTGAGCGTTTCCTCCACAATCTAGGGTTTACAAAATCTCCCTCTTGATTGGTGTAGTAGGCAGCCAGCTCTGTTTCATGTTCTAGATTTCCAGGAGTT
CAATTATCAGAGAATATATTTTGAAGCCTTACTTTAAAGAGGAACATTCACTTCCTTGACAAATCTGGGTTTACACCTTCCATTTACTGTTTGTTGTCTGACTGACCATGGAAGGAAAGGAATCTAGTATGCTGATGAATAGCTGTGTATAGGAGAGCCTCAAACAGTACAGCTTTCACTATGATCTTGGATCTTGTTAA
GTGTGGCTACATGCAGCTTAAACTTGTTCATATGTACAATGACATAGAAAGAAAAAAATGTACATACCGCAACAAGTTTTAACACATGTTTACTTGATATCAGTTCCTGTTATGAGATATTTTTCTCATTCTAGGACAAAATGTAAGCTGTTGCACACGAATATTTTACCATTTCTGGAAGAAATTGGCCATGGTCATTC
GTTTACCTATTAGTGCAACAAGTTTTAACACATGTTTACTTGCTATCAGTTCATATTAATATTCTTCTCATTCTAGGAGAAAATGTAAGCTGTCTTAAGTTGTCACAATATATTTTTCCTTTTGAAATGAACTTCAAA