NA ----> NA
Intron 1 GTAGGTTTAC ... TTGCTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 12 | 18 | 22 |
| A2 | 86.21 | 2 | 14 | 11 |
| A3 | 64.71 | 6 | 9 | 13 |
| A4 | 100 | 0 | 6 | 4 |
| A5 | 93.94 | 1 | 18 | 13 |
| A6 | 63.64 | 12 | 23 | 19 |
| A7 | 74.47 | 18 | 57 | 48 |
| A8 | 76.19 | 15 | 47 | 49 |
| A9 | 74.14 | 15 | 40 | 46 |
| A10 | 70.21 | 21 | 64 | 35 |
>TRINITY_DN44565_c9_g1_i5 from sample A6 / Example spliced isoformCCCAATCCCCAAAAATACCGGCAAAAACAGCCAACCAAACCCCATACCAACAGACCTCAAAACGCCATGAAGAAAAAATGAGAACCAGCAGCGCTGGAGACATTCAAAGCCAGCCACCGGAGATCACATCAAGAACCAAAGAGAGGATACGGGATCTATATGATCCGCCGAACAGGAATATTAAAGACACACAGCAGAAA
AAATACATAGCGATACAAAAATCAATACATAAGGTTACAAAAATCAGGGACGCAAGGCCGGAGTAGGAAAGGAGCAAAGTGACCCCGAGTTTCCGGTGCTGGGCGGGACATAAAAAAACACTTTAAGGTGGGAGTAGTTGACGGGATTTTAACGTGGAAATCCGTTAAACTACCATGAATGCAGGGGGTGCTTTTGGTGG
GAACAGAGGCTTGAAACCTATTCCACCAGAAAAGGGTGTCTTCCCTCTAGATCATTTTCATGAATGTGACTCAGAAAAGAAGGCTTACATGGAATGCCTCAAATCCAATAACTATAAATCTGAGAAATGCAGGCCTCTTTCAAAAAAGTATTTGGAGTGTCGTATGGAAAGAAACTTGATGGCCAAGCAAAATATAACAG
AGCTTGGGTTCACGGAAGCAGATGACAAAGTAAAGGCAGGAGTTACACACATTGACAATGAAGTATACCAGAAGGGACATAGTGAACCTGTGGCTGATATTAAAAATTAAGTTGAACTAACCCTTTTTTTATGTTGTCACTAAAGAGGAGAGTGTTCACATTTTGACGTTTACAATGTCAAAGTGCAGCCCCTTTAAAAT
TGCTGTCCACCTTTACTTCTATGTGGTAGACAAGGAACGTCTTTACTGTGTATTAATTAATTGAATGTATTGTGCCTTGATATCCATGGGAACAATTATGGGGCATGCAGTGGGGTAATGGTGCAAAATGCAATCTAGAAATTTAAGAAGGGTGCCTTTTTTTCAGGTGTTCCATGCAATTTTTTTATTAGCTAATTGAT
GCCGCAGGAAATCTCTATATTCATGGTTATGGCAATATATCCATATTCTCCAGACACAGTAAGGTGACTACCATTCCGAAACAATCTGTATGTAAAAGTTAGTTATGCTCAATACCAAAGAATTTCTCAGGAAATCAATCTCTCATATTGTTTTGGAAACTGCCTAATCCAAAGTCAAATAATCCATTGTTTGCAAATGC
AGAAGCCGATAGCTCTTCAAAGGAAATGGGCATATCTCAAGGATATCTGTAATCTCTTATTGGTGTTCTCTATAATACAGAATTTGATTTCTAACTATTAAGAAAGCTCAAAGTTTATGGCAAAAGTTTTCTTGTATTCTGCAATGGTGATTAATGCAATTTCTTAAGGCTTGATAAGACACTTTCTGTCTCCATGATCG
ATAGGTCGACTTCAAACCAGTGTTATCAGAACCGAACTGGTTCTGGCAAAACCGGCCGGTTAGACCGGTT
>TRINITY_DN44565_c9_g1_i2 from sample A6 / Example unspliced isoform:CCCAATCCCCAAAAATACCGGCAAAAACAGCCAACCAAACCCCATACCAACAGACCTCAAAACGCCATGAAGAAAAAATGAGAACCAGCAGCGCTGGAGACATTCAAAGCCAGCCACCGGAGATCACATCAAGAACCAAAGAGAGGATACGGGATCTATATGATCCGCCGAACAGGAATATTAAAGACACACAGCAGAAA
AAATACATAGCGATACAAAAATCAATACATAAGGTTACAAAAATCAGGGACGCAAGGCCGGAGTAGGAAAGGAGCAAAGTGACCCCGAGTTTCCGGTGCTGGGCGGGACATAAAAgtaggtttacgttggttttgaaaaaaccgatttatttccttccctcgtcaaaattcggtgtggaaataacgcgaagaggtaaatt
tgaagtaacctctgcaatacaaaaaagttatctagacgaagcctcctgatcattcagccacgttgctcgcagAAACACTTTAAGGTGGGAGTAGTTGACGGGATTTTAACGTGGAAATCCGTTAAACTACCATGAATGCAGGGGGTGCTTTTGGTGGGAACAGAGGCTTGAAACCTATTCCACCAGAAAAGGGTGTCTTC
CCTCTAGATCATTTTCATGAATGTGACTCAGAAAAGAAGGCTTACATGGAATGCCTCAAATCCAATAACTATAAATCTGAGAAATGCAGGCCTCTTTCAAAAAAGTATTTGGAGTGTCGTATGGAAAGAGTTACCCAAGAGTTGGACCTTGCTGGATTTTAGTACCTCAGAAAGTGTACAGCAGATTGCCATTAATGGCA
GCAGCGAGCAGAGAACTGTCTGCATACAGAGAAGCCATGTGTTACAGGTGTGCAGGTATGTACAGTAGCAAGGCTACCCTCTTCCACTGGAGTTCTGAATCTGTACAGTCCTTCAGCAATTCCATAAAGCAGTGAATGAGGGCACATTTATGGAGGAGAGAGAGAGAGAAGAAAAAAGAGAGGAAAAAAGAAAAAAAGAA
AAG
Intron 2 GTGACTACCA ... GCAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 5 | 2 |
| A2 | 79.19 | 1.5 | 5 | 6 |
| A3 | 63.64 | 1.6 | 4 | 1 |
| A4 | 100 | 0 | 2 | 0 |
| A5 | 66.67 | 1 | 4 | 0 |
| A6 | 69.25 | 7.6 | 14 | 19.3 |
| A7 | 70.37 | 4 | 14 | 5 |
| A8 | 66.2 | 13.7 | 36 | 17.5 |
| A9 | 64.73 | 8.7 | 23 | 9 |
| A10 | 58.82 | 7 | 13 | 7 |
>TRINITY_DN44565_c9_g1_i1 from sample A6 / Example spliced isoformCCCAATCCCCAAAAATACCGGCAAAAACAGCCAACCAAACCCCATACCAACAGACCTCAAAACGCCATGAAGAAAAAATGAGAACCAGCAGCGCTGGAGACATTCAAAGCCAGCCACCGGAGATCACATCAAGAACCAAAGAGAGGATACGGGATCTATATGATCCGCCGAACAGGAATATTAAAGACACACAGCAGAAA
AAATACATAGCGATACAAAAATCAATACATAAGGTTACAAAAATCAGGGACGCAAGGCCGGAGTAGGAAAGGAGCAAAGTGACCCCGAGTTTCCGGTGCTGGGCGGGACATAAAAGTAGGTTTACGTTGGTTTTGAAAAAACCGATTTATTTCCTTCCCTCGTCAAAATTCGGTGTGGAAATAACGCGAAGAGGTAAATT
TGAAGTAACCTCTGCAATACAAAAAAGTTATCTAGACGAAGCCTCCTGATCATTCAGCCACGTTGCTCGCAGAAACACTTTAAGGTGGGAGTAGTTGACGGGATTTTAACGTGGAAATCCGTTAAACTACCATGAATGCAGGGGGTGCTTTTGGTGGGAACAGAGGCTTGAAACCTATTCCACCAGAAAAGGGTGTCTTC
CCTCTAGATCATTTTCATGAATGTGACTCAGAAAAGAAGGCTTACATGGAATGCCTCAAATCCAATAACTATAAATCTGAGAAATGCAGGCCTCTTTCAAAAAAGTATTTGGAGTGTCGTATGGAAAGAAACTTGATGGCCAAGCAAAATATAACAGAGCTTGGGTTCACGGAAGCAGATGACAAAGTAAAGGCAGGAGT
TACACACATTGACAATGAAGTATACCAGAAGGGACATAGTGAACCTGTGGCTGATATTAAAAATTAAGTTGAACTAACCCTTTTTTTATGTTGTCACTAAAGAGGAGAGTGTTCACATTTTGACGTTTACAATGTCAAAGTGCAGCCCCTTTAAAATTGCTGTCCACCTTTACTTCTATGTGGTAGACAAGGAACGTCTT
TACTGTGTATTAATTAATTGAATGTATTGTGCCTTGATATCCATGGGAACAATTATGGGGCATGCAGTGGGGTAATGGTGCAAAATGCAATCTAGAAATTTAAGAAGGGTGCCTTTTTTTTCAGGTGTTCCATGCAATTTTTTTATTAGCTAATTGATGCCGCAGGAAATCTCTATATTCATGGTTATGGCAATATATCC
ATATTCTCCAGACACAGTAAGAAGCCGATAGCTCTTCAAAGGAAATGGGCATATCTCAAGGATATCTGTAATCTCTTATTGGTGTTCTCTATAATACAGAATTTGATTTCTAACTATTAAGAAAGCTCAAAGTTTATGGCAAAAGTTTTCTTGTATTCTGCAATGGTGATTAATGCAATTTCTTAAGGCTTGATAAGACA
CTTTCTGTCTCCATGATCGATAGGTCGACTTCAAACCAGTGTTATCAGAACCGAACTGGTTCTGGCAAAACCGGCCGGTTAGACCGGTT
>TRINITY_DN44565_c9_g1_i4 from sample A6 / Example unspliced isoform:CCCAATCCCCAAAAATACCGGCAAAAACAGCCAACCAAACCCCATACCAACAGACCTCAAAACGCCATGAAGAAAAAATGAGAACCAGCAGCGCTGGAGACATTCAAAGCCAGCCACCGGAGATCACATCAAGAACCAAAGAGAGGATACGGGATCTATATGATCCGCCGAACAGGAATATTAAAGACACACAGCAGAAA
AAATACATAGCGATACAAAAATCAATACATAAGGTTACAAAAATCAGGGACGCAAGGCCGGAGTAGGAAAGGAGCAAAGTGACCCCGAGTTTCCGGTGCTGGGCGGGACATAAAAGTAGGTTTACGTTGGTTTTGAAAAAACCGATTTATTTCCTTCCCTCGTCAAAATTCGGTGTGGAAATAACGCGAAGAGGTAAATT
TGAAGTAACCTCTGCAATACAAAAAAGTTATCTAGACGAAGCCTCCTGATCATTCAGCCACGTTGCTCGCAGAAACACTTTAAGGTGGGAGTAGTTGACGGGATTTTAACGTGGAAATCCGTTAAACTACCATGAATGCAGGGGGTGCTTTTGGTGGGAACAGAGGCTTGAAACCTATTCCACCAGAAAAGGGTGTCTTC
CCTCTAGATCATTTTCATGAATGTGACTCAGAAAAGAAGGCTTACATGGAATGCCTCAAATCCAATAACTATAAATCTGAGAAATGCAGGCCTCTTTCAAAAAAGTATTTGGAGTGTCGTATGGAAAGAAACTTGATGGCCAAGCAAAATATAACAGAGCTTGGGTTCACGGAAGCAGATGACAAAGTAAAGGCAGGAGT
TACACACATTGACAATGAAGTATACCAGAAGGGACATAGTGAACCTGTGGCTGATATTAAAAATTAAGTTGAACTAACCCTTTTTTTATGTTGTCACTAAAGAGGAGAGTGTTCACATTTTGACGTTTACAATGTCAAAGTGCAGCCCCTTTAAAATTGCTGTCCACCTTTACTTCTATGTGGTAGACAAGGAACGTCTT
TACTGTGTATTAATTAATTGAATGTATTGTGCCTTGATATCCATGGGAACAATTATGGGGCATGCAGTGGGGTAATGGTGCAAAATGCAATCTAGAAATTTAAGAAGGGTGCCTTTTTTTCAGGTGTTCCATGCAATTTTTTTATTAGCTAATTGATGCCGCAGGAAATCTCTATATTCATGGTTATGGCAATATATCCA
TATTCTCCAGACACAGTAAGgtgactaccattccgaaacaatctgtatgtaaaagttagttatgctcaataccaaagaatttctcaggaaatcaatctctcatattgttttggaaactgcctaatccaaagtcaaataatccattgtttgcaaatgcagAAGCCGATAGCTCTTCAAAGGAAATGGGCATATCTCAAGGA
TATCTGTAATCTCTTATTGGTGTTCTCTATAATACAGAATTTGATTTCTAACTATTAAGAAAGCTCAAAGTTTATGGCAAAAGTTTTCTTGTATTCTGCAATGGTGATTAATGCAATTTCTTAAGGCTTGATAAGACACTTTCTGTCTCCATGATCGATAGGTCGACTTCAAACCAGTGTTATCAGAACCGAACTGGTTC
TGGCAAAACCGGCCGGTTAGACCGGTT
Intron 3 GTAAATTTGA ... TTGGTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.56 | 10 | 23 | 22 |
| A2 | 83.79 | 3.3 | 23 | 11 |
| A3 | 65.58 | 8 | 16 | 13 |
| A4 | 76.47 | 2 | 9 | 4 |
| A5 | 80.32 | 4.7 | 25 | 13 |
| A6 | 69.69 | 11 | 29 | 19 |
| A7 | 74.95 | 22.7 | 85 | 48 |
| A8 | 77.79 | 16.3 | 64 | 49 |
| A9 | 80.42 | 14 | 65 | 46 |
| A10 | 65.68 | 30 | 79 | 35 |
>TRINITY_DN41566_c2_g2_i1 from sample A9 / Example spliced isoformAGCACAGCAAAACGCTGGCAAAACCCCTGGCCGGAACCGCGAGCCAATCCCCAAAAATACCGGCAAAAACAGCCAACCAAACCCCATACCAACAGACCTCAAAACGCCATGAAGAAAAAATGAGAACCAGCAGCGCTGGAGACATTCAAAGCCAGCCACCGGAGATCACATCAAGAACCAAAGAGAGGATACGGGATCTA
TATGATCCGCCGAACAGGAATATTAAAGACACACAGCAGAAAAAATACATAGCGATACAAAAATCAATACATAAGGTTACAAAAATCAGGGACGCAAGGCCGGAGTAGGAAAGGAGCAAAGTGACCCCGAGTTTCCGGTGCTGGGCGGGACATAAAAGTAGGTTTACGTTGGTTTTGAAAAAACCGATTTATTTCCTTCC
CTCGTCAAAATTCGGTGTGGAAATAACGCGAAGAGAAACACTTTAAGGTGGGAGTAGTTGACGGGATTTTAACGTGGAAATCCGTTAAACTACCATGAATGCAGGGGGTGCTTTTGGTGGGAACAGAGGCTTGAAACCTATTCCACCAGAAAAGGGTGTCTTCCCTCTAGATCATTTTCATGAATGTGACTCAGAAAAGA
AGGCTTACATGGAATGCCTCAAATCCAATAACTATAAATCTGAGAAATGCAGGCCTCTTTCAAAAAAGTATTTGGAGTGTCGTATGGAAAGAAACTTGATGGCCAAGCAAAATATAACAGAGCTTGGGTTCACGGAAGCAGATGACAAAGTAAAGGCAGGAGTTACACACATTGACAATGAAGTATACCAGAAGGGACAT
AGTGAACCTGTGGCTGATATTAAAAATTAAGTTGAACTAACCCTTTTTTTATGTTGTCACTAAAGAGGAGAGTGTTCACATTTTGACGTTTACAATGTCAAAGTGCAGCCCCTTTAAAATTGCTGTCCACCTTTACTTCTATGTGGTAGACAAGGAACGTCTTTACTGTGTATTAATTAATTGAATGTATTGTGCCTTGA
TATCCATGGGAACAATTATGGGGCATGCAGTGGGGTAATGGTGCAAAATGCAATCTAGAAATTTAAGAAGGGTGCCTTTTTTTCAGGTGTTCCATGCAATTTTTTTATTAGCTAATTGATGCCGCAGGAAATCTCTATATTCATGGTTATGGCAATATATCCATATTCTCCAGACACAGTAAGGTGACTACCATTCCGAA
ACAATCTGTATGTAAAAGTTAGTTATGCTCAATACCAAAGAATTTCTCAGGAAATCAATCTCTCATATTGTTTTGGAAACTGCCTAATCCAAAGTCAAATAATCCATTGTTTGCAAATGCAGAAGCCGATAGCTCTTCAAAGGAAATGGGCATATCTCAAGGATATCTGTAATCTCTTATTGGTGTTCTCTATAATACAG
AATTTGATTTCTAACTATTAAGAAAGCTCAAAGTTTATGGCAAAAGTTTTCTTGTATTCTGCAATGGTGATTAATGCAATTTCTTAAGGCTTGATAAGACACTTTCTGTCTCCATGATCGATAGGTCGACTTCAAACCAGTGTTATCAGAACCGAACTGGTTCTGGCAAAACCAGCCAGTCCAACCGGTTCATAAGGCTT
TCCGGTCCAAACCGGCGTCTCAAACCAGAAATGGCCAGTCTGAACCGACTGATTTTGTACCTAAACTGTCCGGTTCCATACGGAACAGGCCTTAAATGCCTGAACTGCTTGGTTTTGTACAAAACAGGCTGGTTTGAGTATGCCATGGCTTAAAACATGG
>TRINITY_DN41566_c2_g2_i4 from sample A9 / Example unspliced isoform:AGCACAGCAAAACGCTGGCAAAACCCCTGGCCGGAACCGCGAGCCAATCCCCAAAAATACCGGCAAAAACAGCCAACCAAACCCCATACCAACAGACCTCAAAACGCCATGAAGAAAAAATGAGAACCAGCAGCGCTGGAGACATTCAAAGCCAGCCACCGGAGATCACATCAAGAACCAAAGAGAGGATACGGGATCTA
TATGATCCGCCGAACAGGAATATTAAAGACACACAGCAGAAAAAATACATAGCGATACAAAAATCAATACATAAGGTTACAAAAATCAGGGACGCAAGGCCGGAGTAGGAAAGGAGCAAAGTGACCCCGAGTTTCCGGTGCTGGGCGGGACATAAAAGTAGGTTTACGTTGGTTTTGAAAAAACCGATTTATTTCCTTCC
CTCGTCAAAATTCGGTGTGGAAATAACGCGAAGAGgtaaatttgaagtaacctctgcaatacaaaaaagttatctagacgaagcctcctgatcattcagccacgttgctcgcagAAACACTTTAAGGTGGGAGTAGTTGACGGGATTTTAACGTGGAAATCCGTTAAACTACCATGAATGCAGGGGGTGCTTTTGGTGGG
AACAGAGGCTTGAAACCTATTCCACCAGAAAAGGGTGTCTTCCCTCTAGATCATTTTCATGAATGTGACTCAGAAAAGAAGGCTTACATGGAATGCCTCAAATCCAATAACTATAAATCTGAGAAATGCAGGCCTCTTTCAAAAAAGTATTTGGAGTGTCGTATGGAAAGAGTTACCCAAGAGTTGGACCTTGCTGGATT
TTAGTACCTCAGAAAGTGTACAGCAGATTGCCATTAATGGCAGCAGCGAGCAGAGAACTGTCTGCATACAGAGAAGCCATGTGTTACAGGTGTGCAGAAACTTGATGGCCAAGCAAAATATAACAGAGCTTGGGTTCACGGAAGCAGATGACAAAGTAAAGGCAGGAGTTACACACATTGACAATGAAGTATACCAGAAG
GGACATAGTGAACCTGTGGCTGATATTAAAAATTAAGTTGAACTAACCCTTTTTTTATGTTGTCACTAAAGAGGAGAGTGTTCACATTTTGACGTTTACAATGTCAAAGTGCAGCCCCTTTAAAATTGCTGTCCACCTTTACTTCTATGTGGTAGACAAGGAACGTCTTTACTGTGTATTAATTAATTGAATGTATTGTG
CCTTGATATCCATGGGAACAATTATGGGGCATGCAGTGGGGTAATGGTGCAAAATGCAATCTAGAAATTTAAGAAGGGTGCCTTTTTTTCAGGTGTTCCATGCAATTTTTTTATTAGCTAATTGATGCCGCAGGAAATCTCTATATTCATGGTTATGGCAATATATCCATATTCTCCAGACACAGTAAGGTGACTACCAT
TCCGAAACAATCTGTATGTAAAAGTTAGTTATGCTCAATACCAAAGAATTTCTCAGGAAATCAATCTCTCATATTGTTTTGGAAACTGCCTAATCCAAAGTCAAATAATCCATTGTTTGCAAATGCAGAAGCCGATAGCTCTTCAAAGGAAATGGGCATATCTCAAGGATATCTGTAATCTCTTATTGGTGTTCTCTATA
ATACAGAATTTGATTTCTAACTATTAAGAAAGCTCAAAGTTTATGGCAAAAGTTTTCTTGTATTCTGCAATGGTGATTAATGCAATTTCTTAAGGCTTGATAAGACACTTTCTGTCTCCATGATCGATAGGTCGACTTCAAACCAGTGTTATCAGAACCGAACTGGTTCTGGCAAAACCAGCCAGTCCAACCGGTTCATA
AGGCTTTCCGGTCCAAACCGGCGTCTCAAACCAGAAATGGCCAGTCTGAACCGACTGATTTTGTACCTAAACTGTCCGGTTCCATACGGAACAGGCCTTAAATGCCTGAACTGCTTGGTTTTGTACAAAACAGGCTGGTTTGAGTATGCCATGGCTTAAAACATGG