NA ----> NA
Intron 1 GTAAGTAGAA ... CAATAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14 | 43 | 13 | 1 |
| A2 | 7.69 | 42 | 3 | 4 |
| A3 | 15.15 | 28 | 5 | 5 |
| A4 | 13.89 | 31 | 10 | 0 |
| A5 | 4.76 | 10 | 0 | 1 |
| A6 | 10.77 | 58 | 10 | 4 |
| A7 | 14.38 | 128 | 27 | 16 |
| A8 | 10.37 | 147 | 17 | 17 |
| A9 | 9.68 | 98 | 10 | 11 |
| A10 | 11.56 | 65 | 11 | 6 |
>TRINITY_DN115001_c0_g1_i5 from sample A1 / Example spliced isoformAAATGGAAAAGCCTTGGAGAAAATGAACAAGCAAAGACCTGGACTGAAGGAATTAAGCGTTGGCTTGAAGAGCCCCTGTGGCCAAACACAAAACAACAATCAATAAGTCTTCCCAAGCATATGAATGAGTTCCACGAACAATCTCCGGCAAATTTGGAAGCAGAAAATGACCCACCAATTTGGCTGGCCGCACAGGAAGC
AGTCCCTCGGTATGAAAAGTTTTTATCTTCTGCAGGCTCTCGTGGGAGGCTTCTAAGAAAATTACTCATTTGGATGGGTCTTCTTCCATCAGAACCACCAGCATCTACCATTATTGACAGTAATGGTTCATCTTCAGACCCATATTTGAGGAAAAATTTCCTATCAAGAGTCTCACTGAAGGATATCTGGAAACCTGCAA
CAAAGGAAATTTGTGAAAATGATGTTTGGAGACAAGTCCGAGCTGCATTCTCAGTTCTTTTTTCACGGTCAACTTTGCAGGAGCCAGCATTCAAAGAATTAGTTTTATTGTATACTGCACCTGTGGACGAGAAAGGAAATGAAAAGAGTTATAGTCTTCCAACCCTACAATTGAAAATATATAAGATGATTCCAATACCA
GATCTTAAAGTGATATTTCCAAATAAGAAGCTCTCTTTTCGGATCCTTGATACTGTACGCTTGGACATTGCCACTATCTTGGGGCTGCTGGCATTTTTCATTAATCACAGATTTGAGGACTTTTTTATCTCCCCGTAAGACCCTTCCAAACAGTTTTCAGCATGACGAGTGCCTTATTGAGTTGAAACATATCAGCGTTT
ATGCTTGATGTGATTGCATTTGGTGCACTTATTGTATTTATAACAAGAGTGGTTCTTGGCTACAAGCAAACGTGGGATCGATACGAACTTCTTGTTAACAGGACACTGTATGAGAAAACATTAGCTAGTGGTTTTGGCACAACTCATTTTCTTGTGGATGCCTCTGAACAACAGGAATTCAAGGAAGTTATTTTGGCTTA
TGCTCTTCTCCTTCAAGTAGAAAATAATCAGGTGGGGAGTCGGAAAAGGATTGCTGACCTCTGTGAGCATTTCCTTTCTAGTAAATTTAAAGAACAGATTGAGATGCCGATTGATAAGGCCATGGAAACTCTACTAAGGCTGGGCCTTGTAACTGAAGATGTGACAATCAAGAAGCTAGAAGGCAGAGAAGCTTCAATGG
TGCATAGTATAAAAGCTGTCCCATTCGCTAAATCTTATGAGGTTTTGAAAGAAAGATGGGGAAACTTGCTTCATCAACAATAGCTATGTCAAATTGAGTCCAGTCCGGGAGTGTAACTTTCACAGCCATATAGCAAAGATTGTTAAAAATGACTGCTTGAAATTCAAGATATTTCTAGTTGAATCCTTGTATTTCATGGT
GCACACAAGTATGAACTTGATATAATTGTATTTTTATTGACATTTAGGAAAATCATTTACAGTTTCATATTTGTATTTCATCATGTAGAAGAGTGAACTAATGTATCACTGCATTCTAACTGGATGTCTGGCAAAGCCTAGTCTTGCCATTTATCGGGTCGAACAGTTAACCCCAAAGCATAATATACAAACAATATAGA
GAAGAAGAGAGTTCAGTTTAATGCAAGACTTTGTTGATCATTTTGCATGCCTTGCCAAGTGCTAAAGTGTTAATAAAATAACACCCAAATCAAGGATCATCTCAGGATGCAGTGCCATGATATAATGGCACATACCAGAGCAACTATATGCATCTTGTTTTATCTATGTTATACATAAGGA
>TRINITY_DN115001_c0_g1_i4 from sample A1 / Example unspliced isoform:ATTACGTTGATAGCCACACAATTGCGTCGTTAAAAATGTAAATGTAATGTATGTCTATGGGATTCATCATTCGGCGTCCGTGTATGAGCTCCAAACCACTCTCCATCCTCCAATAATTCTATGGAGTTAATTCACTGCTTCTGCAATTCAACGGTTGCTCTACCTCTCCATTATCGATTTATTCGTAACAATGCTAATTT
CTGTAACCTCACCACTGCCACTAATTGCTCCTTCGGGCCGTCCGCAGGCGGCCTCAAGAATGTTAAAAGTGTCATGTGCAAAGCAGTCAGAAATTTGGAGGTGGTGGGCATGAGAGATGGAATTAATAACTCGTTGATGGAAATAGCAGAGCCCAAGCAAAACATAGGTCAAGAAGATGATGATGTGGAGATGGAGATGC
AGGCAGCTACCGAGGAAGAAGAAGAGGAAAGCATTTCAGGAATTCCAGTGCCGAGGCAAAGATATATTCCCATTTCTAAATTTGACCTCCTCCACGCTCTTCTCTCACTCTTCGACAATGATAAGGATGCCCGAGAGCATTTTCTCGCTATATACTCATATTTGGACAGCATTCTTCATGCTGAACACAAAAGTATTCTT
GAAGAGATGCGCCTTGATTACAGTCTTACATATGCACACGTTGACATTGGAAATCAATACTTAGAGGATGATGTCCATGGTTCATCCTCGAGCACAGAAAATGAAGAAACACCCTGCAGCCAAGATAATGAAATTGAATCTTTGCTTCACAAAGGAAAAACAGATGAGGCGCCTGGAAAGAAAATGAGTCGGTACAAGAT
AACATCTCAGTACAGGGCTGGTAGAAATCTGGGAAATGAATCCAGTGCATCTATTAGAGATTTTCTTCAGATTCCAAATGGAGATGCCAGAGTTAATTTTGCAACTCGATTCCAACGGAACTTCATGCAGCTTTTACGAAATGCTGAATTTCAAGAACTATCAACCCAAGATTTACAATTGAGTTCAGCTTTGAACACTG
ACTACTTGCTAACTCTACCAGTTGATGTTGACTGGAAGCATGCATCTTCATCAAATGCAATAATCTTCAGACGTGGATACACTACCGAAATACAAGAGGGGTTACTTATTGGAGAGAAGTTTGATTATTTGCAATCTAGACTCTTGCAGAAAACATTCAGTAGCTTGTCACAACCTCTTTTAAAGACTGGCATGTGGATG
AATAAGAAATGGAAAAGCCTTGGAGAAAATGAACAAGCAAAGACCTGGACTGAAGGAATTAAGCGTTGGCTTGAAGAGCCCCTGTGGCCAAACACAAAACAACAATCAATAAGTCTTCCCAAGCATATGAATGAGTTCCACGAACAATCTCCGGCAAATTTGGAAGCAGAAAATGACCCACCAATTTGGCTGGCCGCACA
GGAAGCAGTCCCTCGGTATGAAAAGTTTTTATCTTCTGCAGGCTCTCGTGGGAGGCTTCTAAGAAAATTACTCATTTGGATGGGTCTTCTTCCATCAGAACCACCAGCATCTACCATTATTGACAGTAATGGTTCATCTTCAGACCCATATTTGAGGAAAAATTTCCTATCAAGAGTCTCACTGAAGGATATCTGGAAAC
CTGCAACAAAGGAAATTTGTGAAAATGATGTTTGGAGACAAGTCCGAGCTGCATTCTCAGTTCTTTTTTCACGGTCAACTTTGCAGGAGCCAGCATTCAAAGAATTAGTTTTATTGTATACTGCACCTGTGGACGAGAAAGGAAATGAAAAGAGTTATAGTCTTCCAACCCTACAATTGAAAATATATAAGATGATTCCA
ATACCAGATCTTAAAGTGATATTTCCAAATAAGAAGCTCTCTTTTCGGATCCTTGATACTGTACGCTTGGACATTGCCACTATCTTGGGGCTGCTGGCATTTTTCATTAATCACAGATTTGAGGACTTTTTTATCTCCCCATCAGCGTTTATGCTTGATGTGATTGCATTTGGTGCACTTATTGTATTTATAACAAGAGT
GGTTCTTGGCTACAAGCAAACGTGGGATCGATACGAACTTCTTGTTAACAGGACACTGTATGAGAAAACATTAGCTAGTGGTTTTGGCACAACTCATTTTCTTGTGGATTCCTCTGAACAACAGGAAgtaagtagaatgtttctttttccttgatctaatccatgcactagatgtgtattttcaaaatgaaaataggatt
ttctctcttgttttaaacgttcatttatctatcttgagcatgaaggctatggtcaactcctactatactaaatgttaatctttgttatcttgtatttatctctctcaataagcagTTCAAGGAAGTTATTTTGGCTTATGCTCTTCTCCTTCAAGTAGAAAATAATCAGGTGGGGAGTCGGAAAAGGATTGCTGACCTCT
GTGAGCATTTCCTTTCTAGTAAATTTAAAGAACAG
Intron 2 GTATTTTAAA ... GTTTATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.35 | 46 | 18.5 | 13 |
| A2 | 13.8 | 37 | 5.9 | 6 |
| A3 | 14.69 | 38.1 | 10.3 | 3 |
| A4 | 14.71 | 30 | 3.4 | 7 |
| A5 | 19.49 | 10 | 4.8 | 0 |
| A6 | 16.64 | 84 | 19.7 | 14 |
| A7 | 16.15 | 139 | 34.8 | 19 |
| A8 | 16.93 | 200 | 48 | 34 |
| A9 | 20.9 | 124 | 31.8 | 34 |
| A10 | 14.15 | 83 | 19.5 | 8 |
>TRINITY_DN115001_c0_g1_i5 from sample A1 / Example spliced isoformAAATGGAAAAGCCTTGGAGAAAATGAACAAGCAAAGACCTGGACTGAAGGAATTAAGCGTTGGCTTGAAGAGCCCCTGTGGCCAAACACAAAACAACAATCAATAAGTCTTCCCAAGCATATGAATGAGTTCCACGAACAATCTCCGGCAAATTTGGAAGCAGAAAATGACCCACCAATTTGGCTGGCCGCACAGGAAGC
AGTCCCTCGGTATGAAAAGTTTTTATCTTCTGCAGGCTCTCGTGGGAGGCTTCTAAGAAAATTACTCATTTGGATGGGTCTTCTTCCATCAGAACCACCAGCATCTACCATTATTGACAGTAATGGTTCATCTTCAGACCCATATTTGAGGAAAAATTTCCTATCAAGAGTCTCACTGAAGGATATCTGGAAACCTGCAA
CAAAGGAAATTTGTGAAAATGATGTTTGGAGACAAGTCCGAGCTGCATTCTCAGTTCTTTTTTCACGGTCAACTTTGCAGGAGCCAGCATTCAAAGAATTAGTTTTATTGTATACTGCACCTGTGGACGAGAAAGGAAATGAAAAGAGTTATAGTCTTCCAACCCTACAATTGAAAATATATAAGATGATTCCAATACCA
GATCTTAAAGTGATATTTCCAAATAAGAAGCTCTCTTTTCGGATCCTTGATACTGTACGCTTGGACATTGCCACTATCTTGGGGCTGCTGGCATTTTTCATTAATCACAGATTTGAGGACTTTTTTATCTCCCCGTAAGACCCTTCCAAACAGTTTTCAGCATGACGAGTGCCTTATTGAGTTGAAACATATCAGCGTTT
ATGCTTGATGTGATTGCATTTGGTGCACTTATTGTATTTATAACAAGAGTGGTTCTTGGCTACAAGCAAACGTGGGATCGATACGAACTTCTTGTTAACAGGACACTGTATGAGAAAACATTAGCTAGTGGTTTTGGCACAACTCATTTTCTTGTGGATGCCTCTGAACAACAGGAATTCAAGGAAGTTATTTTGGCTTA
TGCTCTTCTCCTTCAAGTAGAAAATAATCAGGTGGGGAGTCGGAAAAGGATTGCTGACCTCTGTGAGCATTTCCTTTCTAGTAAATTTAAAGAACAGATTGAGATGCCGATTGATAAGGCCATGGAAACTCTACTAAGGCTGGGCCTTGTAACTGAAGATGTGACAATCAAGAAGCTAGAAGGCAGAGAAGCTTCAATGG
TGCATAGTATAAAAGCTGTCCCATTCGCTAAATCTTATGAGGTTTTGAAAGAAAGATGGGGAAACTTGCTTCATCAACAATAGCTATGTCAAATTGAGTCCAGTCCGGGAGTGTAACTTTCACAGCCATATAGCAAAGATTGTTAAAAATGACTGCTTGAAATTCAAGATATTTCTAGTTGAATCCTTGTATTTCATGGT
GCACACAAGTATGAACTTGATATAATTGTATTTTTATTGACATTTAGGAAAATCATTTACAGTTTCATATTTGTATTTCATCATGTAGAAGAGTGAACTAATGTATCACTGCATTCTAACTGGATGTCTGGCAAAGCCTAGTCTTGCCATTTATCGGGTCGAACAGTTAACCCCAAAGCATAATATACAAACAATATAGA
GAAGAAGAGAGTTCAGTTTAATGCAAGACTTTGTTGATCATTTTGCATGCCTTGCCAAGTGCTAAAGTGTTAATAAAATAACACCCAAATCAAGGATCATCTCAGGATGCAGTGCCATGATATAATGGCACATACCAGAGCAACTATATGCATCTTGTTTTATCTATGTTATACATAAGGA
>TRINITY_DN115001_c0_g1_i9 from sample A1 / Example unspliced isoform:ATTAAGCATGTGAGCACCCCATGGTATGTTATACATTGTAAAATTAATTCTAATTTCTATGTAAAAGGTAAAAAAATGTATTTATGTGATAATCCATAGAGGGAGTTTGCACTATCTTAATTTATCCACCTCCTTAATTTTTGTACCATCACTAAAGTACACATTAAGGGAGCCAAATGAGTGAAAATTAATTGATTGAA
TAATTTTGTTTCTAAGCATGCTAACAAATTCCAATTTTTATGCAGATCAGCGTTTATGCTTGATGTGATTGCATTTGGTGCACTTATTGTATTTATAACAAGAGTGGTTCTTGGCTACAAGCAAACGTGGGATCGATACGAAGTGGGGAGTCGGAAAAGGATTGCTGACCTCTGTGAGCATTTCCTTTCTAGTAAATTTA
AAGAACAGgtattttaaagataatcaagcacatctaaagagaactctatagatattcttactattaattcacctatactattttttggttgggagctatgtgtgcattaactttgttgcttcacgtctcagagtccttatctacttgatgtattttaccgttattaatatgaaaaatatctggtttatctagATTGAGAT
GCCGATTGATAAGGCCATGGAAACTCTACTAAGGCTGGGCCTTGTAACTGAAGATGTGACAATCAAGAAGCTAGAAGGCAGAGAAGCTTCAATGGTGCATAGTATAAAAGCTGTCCCATTCGCTAAATCTTATGAGGTTTTGAAAGAAAGATGGGGAAACTTGCTTCATCAACAATAGCTATGTCAAATTGAGTCCAGTC
CGGGAGTGTAACTTTCACAGCCATATAGCAAAGATTGTTAAAAATGACTGCTTGAAATTCAAGATATTTCTAGTTGAATCCTTGTATTTCATGGTGCACACAAGTATGAACTTGATATAATTGTATTTTTATTGACATTTAGGAAAATCATTTACAGTTTCATATTTGTATTTCATCATGTAGAAGAGTGAACTAATGTA
TCACTGCATTCTAACTGGATGTCTGGCAAAGCCTAGTCTTGCCATTTATCGGGTCGAACAGTTAACCCCAAAGCATAATATACAAACAATATAGAGAAGAAGAGAGTTCAGTTTAATGCAAGACTTTGTTGATCATTTTGCATGCCTTGCCAAGTGCTAAAGTGTTAATAAAATAACACCCAAATCAAGGATCATCTCAG
GATGCAGTGCCATGATATAATGGCACATACCAGAGCAACTATATGCATCTTGTTTTATCTATGTTATACATAAGGA