sp|Q94BY9|GAP22_ARATH ----> Rab GTPase-activating protein 22
Intron 1 GTAATTTATT ... TTGAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.49 | 114 | 9.9 | 39 |
| A2 | 16.31 | 118 | 13.9 | 23 |
| A3 | 22.64 | 123 | 18.7 | 36 |
| A4 | 23.13 | 113 | 8.9 | 34 |
| A5 | 22.83 | 71 | 7.5 | 21 |
| A6 | 20 | 32 | 0 | 8 |
| A7 | 17.92 | 87 | 5.7 | 19 |
| A8 | 22.45 | 38 | 5.7 | 11 |
| A9 | 23.08 | 80 | 2.5 | 24 |
| A10 | 25.52 | 108 | 5.7 | 37 |
>TRINITY_DN119309_c6_g3_i6 from sample A1 / Example spliced isoformATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGTTTTCTTCAGTGTTTGGATATTTTTATGCTACTTGATGACAGAATATTTCTTTTTTCCTCTTTTCCCATTATGTAAAGAATTTAGGTATGGGTATTGTCTTTTGGCT
ATATTGAGGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTACCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTGTAATATCATCTTATTCTTTAGTGAATATATTGCAGATTAAGAATGCCTGGATAAGTATATTCAAACTGATCTTAAGTATAAGATTGTATTAC
TCAGGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATG
CTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGAT
AGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCC
GTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTC
CAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATT
ATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
>TRINITY_DN119309_c6_g3_i5 from sample A1 / Example unspliced isoform:TCCCTATGGCTCTTAGAAAAGAGgtaatttattttttgtttcatatttttcatgaatgaaattcattttgcaagcagtgaacactgaatgcaaattagtggctctgttcttgacaaggtgaactgagcttttgagtgcagCTTTGGCAAGCTTTTGTTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTA
CTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGTTCCTTGAAATATAAATATGCCGACCAATCCTTGAAGCAAGAATTCCTTCTTTAAATTTTAGTTTCATGGGAGATT
GAATTAGCTGCATGGTTAATGTTTCTGCTTTGCCTCAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCACTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAA
AATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGAAGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGT
GAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGCTGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTT
TAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCCACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTA
GAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGAGGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATC
TGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTCTTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTA
CCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCG
ATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGA
ACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAG
ATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGA
TTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATG
TAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCA
ACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
Intron 2 GTTTTCTTCA ... CTATATTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.62 | 71 | 62 | 13 |
| A2 | 47.22 | 57 | 51 | 8 |
| A3 | 51.79 | 81 | 87 | 28 |
| A4 | 47.01 | 71 | 63 | 3 |
| A5 | 48.33 | 31 | 29 | 2 |
| A6 | 46.91 | 43 | 38 | 1 |
| A7 | 45.9 | 178 | 151 | 0 |
| A8 | 46.36 | 118 | 102 | 8 |
| A9 | 46.59 | 149 | 130 | 8 |
| A10 | 45.45 | 150 | 125 | 1 |
>TRINITY_DN119309_c6_g3_i7 from sample A1 / Example spliced isoformTATATATCCCTTGTGTACTGCCTCCGGGCTCGCTGTGTCCCGTGTCGGATACTTGTATTTCCTTGTCCCGTGTCCTCGTGTCAGTTGAATTAGATGACATCATTATGAATTGTTTTTTTGGTTGAAAAAGCCCTTTATATTTACAGAAAAATATAGCCAGGGGTGCCAGGGTTCTCATCTCCAGAGGGATTTTGATTTCC
TCAAGTAGAAGAAGAGGGTGCTTGACCTCCGTAGGTCAGATGGTTCTCTATCTGAGGATCCTTGGGTTGAGGTAGTTCTCACTTTCAGTCTATTTTTGCTCCCTATGATCTGACAGATGGGGTGGTTGCTGCTTGAGATGTTTGTTCAGGGTTGTCCCTCACAAGGTCTCTAGTGGTGATTGGGACATCATTATGAAATA
TTATTAAATTTCCTTATTGAATTTTGAACTGCTCTACTGAATGTTTGTCAAGGGCTTTTATTTATCTTTTGACTGAGACTATTCCCTTTTAACACTTTTACAATATGTGGATTGGATAATGCCTATTAAACTATTATTTTTGATAGTTAAAAGATAATATCAGATTGCTGAGAAGTAGAACATGTTATTTATTTGAAACT
TGACAGAGTATTTCATTTGCATATTTTGCATGTTTGTTTTCGCTTAAAACTTATATTTTCCCTGACAACTGGATATTGTTTATTTTTTAACCTGGCTATAGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGCTGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCA
CAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCCACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGG
AGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGAGGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATAC
AATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTCTTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAG
TTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTACCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAG
CAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATC
AATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCT
TAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTA
CATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCT
TCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCAT
GATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
>TRINITY_DN119309_c6_g3_i6 from sample A1 / Example unspliced isoform:ATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGgttttcttcagtgtttggatatttttatgctacttgatgacagaatatttcttttttcctcttttcccattatgtaaagaatttaggtatgggtattgtcttttggct
atattgagGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTACCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTGTAATATCATCTTATTCTTTAGTGAATATATTGCAGATTAAGAATGCCTGGATAAGTATATTCAAACTGATCTTAAGTATAAGATTGTATTAC
TCAGGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATG
CTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGAT
AGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCC
GTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTC
CAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATT
ATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
Intron 3 GCACTTGAGT ... TCATGATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.64 | 254 | 58.5 | 21 |
| A2 | 8.09 | 250 | 56.5 | 22 |
| A3 | 10.14 | 257 | 50.5 | 29 |
| A4 | 14.73 | 191 | 37 | 33 |
| A5 | 3.6 | 107 | 23.5 | 4 |
| A6 | 10.58 | 169 | 32.5 | 20 |
| A7 | 10.86 | 583 | 113 | 71 |
| A8 | 12.73 | 418 | 73.5 | 61 |
| A9 | 8.9 | 440 | 69.5 | 43 |
| A10 | 8.14 | 429 | 83.5 | 38 |
>TRINITY_DN39142_c0_g2_i1 from sample A7 / Example spliced isoformATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAG
TATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACC
TATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGT
TGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTT
TTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTC
TCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCAC
AATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAATCATTTGATAATGGAAATCATTTGGTTTTATGTTGTTTCTTTATATTTCAGCATTTCAGCCCGTGATTCCTTTAATTAAGTATATGATATTGTGTAGCAAACAACATGATGTAATTATGTGATTCTGTATGCTAGT
TATAATAGATCTTGAGATTGTTGGATTTTATTCATATCAACCAAAGGGTTATAGACGCC
>TRINITY_DN39142_c0_g2_i2 from sample A7 / Example unspliced isoform:ATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGgcactt
gagtggttacatgaggaggagctggggcagggggcaatggaggatgacccatctatgggggaggaggagattgagagtgaggaggctgatgggacagcccctatgccaccttctacatcgagtcggactctcaccaatggacattcgtcaccaattacagaccttcttccatgctagaccttctccctatacacagggta
gagggaattggtagctaactgctagattaatcattgtagatgactcatcatgatgagGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACG
TGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTG
GCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTA
AAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGT
GTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTT
AATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAATCATTTGATAATGGAAATCATTTGGTTTTATGTTGTTTCTTTATATTTCAGCATTTCAGCCCGTGATTCCTTT
AATTAAGTATATGATATTGTGTAGCAAACAACATGATGTAATTATGTGATTCTGTATGCTAGTTATAATAGATCTTGAGATTGTTGGATTTTATTCATATCAACCAAAGGGTTATAGACGCC
Intron 4 GTTCCTTGAA ... TTTGCCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.04 | 159 | 29.5 | 35 |
| A2 | 17.82 | 143 | 19 | 31 |
| A3 | 18.23 | 166 | 27.5 | 37 |
| A4 | 19.5 | 161 | 13 | 39 |
| A5 | 16.98 | 88 | 10.5 | 18 |
| A6 | 19.64 | 45 | 5 | 11 |
| A7 | 14.71 | 174 | 15.5 | 30 |
| A8 | 14.81 | 69 | 8 | 12 |
| A9 | 15.26 | 161 | 19.5 | 29 |
| A10 | 17.3 | 153 | 18 | 32 |
>TRINITY_DN119309_c6_g3_i6 from sample A1 / Example spliced isoformATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGTTTTCTTCAGTGTTTGGATATTTTTATGCTACTTGATGACAGAATATTTCTTTTTTCCTCTTTTCCCATTATGTAAAGAATTTAGGTATGGGTATTGTCTTTTGGCT
ATATTGAGGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTACCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTGTAATATCATCTTATTCTTTAGTGAATATATTGCAGATTAAGAATGCCTGGATAAGTATATTCAAACTGATCTTAAGTATAAGATTGTATTAC
TCAGGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATG
CTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGAT
AGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCC
GTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTC
CAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATT
ATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
>TRINITY_DN119309_c6_g3_i5 from sample A1 / Example unspliced isoform:TCCCTATGGCTCTTAGAAAAGAGGTAATTTATTTTTTGTTTCATATTTTTCATGAATGAAATTCATTTTGCAAGCAGTGAACACTGAATGCAAATTAGTGGCTCTGTTCTTGACAAGGTGAACTGAGCTTTTGAGTGCAGCTTTGGCAAGCTTTTGTTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTA
CTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGgttccttgaaatataaatatgccgaccaatccttgaagcaagaattccttctttaaattttagtttcatgggagatt
gaattagctgcatggttaatgtttctgctttgcctcagGATTTGCCTCGAACATTTCCAGGTCATCCAGCACTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAA
AATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGAAGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGT
GAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGCTGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTT
TAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCCACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTA
GAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGAGGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATC
TGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTCTTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTA
CCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCG
ATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGA
ACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAG
ATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGA
TTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATG
TAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCA
ACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
Intron 5 GTTTTCTTCA ... TATTACTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.64 | 319 | 62 | 158 |
| A2 | 24.3 | 310 | 51 | 148 |
| A3 | 26.3 | 346 | 87 | 160 |
| A4 | 23.81 | 280 | 63 | 112 |
| A5 | 24.66 | 139 | 29 | 62 |
| A6 | 23.58 | 175 | 38 | 70 |
| A7 | 22.24 | 757 | 151 | 282 |
| A8 | 22.9 | 490 | 102 | 189 |
| A9 | 22.82 | 602 | 130 | 226 |
| A10 | 20.88 | 610 | 125 | 197 |
>TRINITY_DN119309_c6_g3_i2 from sample A1 / Example spliced isoformATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAG
TATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACC
TATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGT
TGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTT
TTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTC
TCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCAC
AATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
>TRINITY_DN119309_c6_g3_i6 from sample A1 / Example unspliced isoform:ATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGgttttcttcagtgtttggatatttttatgctacttgatgacagaatatttcttttttcctcttttcccattatgtaaagaatttaggtatgggtattgtcttttggct
atattgagggtatggcatgttcaaggattctgtacaaggtttttacctccagctgttattgccatctccagtgaagaaggattgcttgaaactatatcaatgccattgtaatatcatcttattctttagtgaatatattgcagattaagaatgcctggataagtatattcaaactgatcttaagtataagattgtattac
tcagGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATG
CTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGAT
AGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCC
GTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTC
CAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATT
ATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
Intron 6 GTAATATCAT ... TATTACTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.32 | 144 | 17 | 158 |
| A2 | 51.21 | 141 | 6 | 148 |
| A3 | 51.28 | 152 | 11 | 160 |
| A4 | 54.37 | 94 | 7 | 112 |
| A5 | 53.45 | 54 | 2 | 62 |
| A6 | 49.3 | 72 | 0 | 70 |
| A7 | 50 | 282 | 2 | 282 |
| A8 | 50 | 189 | 3 | 189 |
| A9 | 50 | 226 | 5 | 226 |
| A10 | 50.13 | 196 | 1 | 197 |
>TRINITY_DN119309_c6_g3_i7 from sample A1 / Example spliced isoformTATATATCCCTTGTGTACTGCCTCCGGGCTCGCTGTGTCCCGTGTCGGATACTTGTATTTCCTTGTCCCGTGTCCTCGTGTCAGTTGAATTAGATGACATCATTATGAATTGTTTTTTTGGTTGAAAAAGCCCTTTATATTTACAGAAAAATATAGCCAGGGGTGCCAGGGTTCTCATCTCCAGAGGGATTTTGATTTCC
TCAAGTAGAAGAAGAGGGTGCTTGACCTCCGTAGGTCAGATGGTTCTCTATCTGAGGATCCTTGGGTTGAGGTAGTTCTCACTTTCAGTCTATTTTTGCTCCCTATGATCTGACAGATGGGGTGGTTGCTGCTTGAGATGTTTGTTCAGGGTTGTCCCTCACAAGGTCTCTAGTGGTGATTGGGACATCATTATGAAATA
TTATTAAATTTCCTTATTGAATTTTGAACTGCTCTACTGAATGTTTGTCAAGGGCTTTTATTTATCTTTTGACTGAGACTATTCCCTTTTAACACTTTTACAATATGTGGATTGGATAATGCCTATTAAACTATTATTTTTGATAGTTAAAAGATAATATCAGATTGCTGAGAAGTAGAACATGTTATTTATTTGAAACT
TGACAGAGTATTTCATTTGCATATTTTGCATGTTTGTTTTCGCTTAAAACTTATATTTTCCCTGACAACTGGATATTGTTTATTTTTTAACCTGGCTATAGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGCTGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCA
CAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCCACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGG
AGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGAGGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATAC
AATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTCTTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAG
TTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTACCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAG
CAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATC
AATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCT
TAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTA
CATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCT
TCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCAT
GATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
>TRINITY_DN119309_c6_g3_i6 from sample A1 / Example unspliced isoform:ATCGAAAGTAAAATAATTTGTATATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGGCGATTTTGACGGATACG
AAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTTTTTGCGGCTCATCCGTC
GTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGAGGAAGGGGAAAGATCGG
AAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGGTAGATGATGTGAAACAG
GACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCTGTCTCTGAAGAGGATTC
AGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGAGCTTTGGCAAGCTTTTG
TTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACATTTCCAGGTCATCCAGCA
CTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTATTCAGAGAAGATGGTGGA
AGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCAAGGAAATCGAACCATGC
TGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGCGAGAGAAGCATCGTCCC
ACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACAAGAAGAGGGAGTTTCGA
GGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGAGGATAACAGGCGACTTC
TTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGTTTTCTTCAGTGTTTGGATATTTTTATGCTACTTGATGACAGAATATTTCTTTTTTCCTCTTTTCCCATTATGTAAAGAATTTAGGTATGGGTATTGTCTTTTGGCT
ATATTGAGGGTATGGCATGTTCAAGGATTCTGTACAAGGTTTTTACCTCCAGCTGTTATTGCCATCTCCAGTGAAGAAGGATTGCTTGAAACTATATCAATGCCATTgtaatatcatcttattctttagtgaatatattgcagattaagaatgcctggataagtatattcaaactgatcttaagtataagattgtattac
tcagGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAAATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATG
CTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAAGGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGAT
AGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGTGCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCC
GTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAGAACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTC
CAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTACAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATT
ATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCTGGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAA
Intron 7 GTAATTCATT ... TTTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.48 | 133.6 | 0 | 2 |
| A2 | 1.08 | 91.7 | 0 | 1 |
| A3 | 3.53 | 109.6 | 2 | 4 |
| A4 | 1.05 | 94.7 | 0 | 1 |
| A5 | 3.36 | 28.7 | 0 | 1 |
| A6 | 0 | 32.3 | 0 | 0 |
| A7 | 2.23 | 87.9 | 0 | 2 |
| A8 | 0 | 49.3 | 0 | 0 |
| A9 | 4.52 | 105.6 | 0 | 5 |
| A10 | 0 | 101.3 | 0 | 0 |
>TRINITY_DN111988_c3_g1_i8 from sample A3 / Example spliced isoformGAAATCCCAGTGTACCGATCGAAAGTAAAATAATTTGTGTATAAACGAATAGGAGAAAATGTAAGAATGAACATGTGCGGCGGTCATGTGATACTATTCACGACAGTACTTCCCACTTCGGAAATTAAAAATGCGAAAATTAATTAAAAACCGATTGAGCAATGAATCGAATCGATGACTGTTTCTTTCGATTCCGATGG
CGATTTTGACGGATACGAAGGCGATGATGGCGCAATGAAATACCAGACAGCAACGATCCGGACAACGAGCTGAACGCGCGAGGTCGCAGGGTCGATCCACGCCGCTTCTTTAATAGTTTCTTAGTCGAGCTCCTCTGATCGGCGCTCTGGGATATCAATTTAGCGAAAGAAAGTCTTTCTGCGCCTCATCAGTCAGTCTT
TTTGCGGCTCATCCGTCGTTCGAGGGCTGTTGGATGATCATGTAACGGTAGACCGAGCAATACACAGTCGAGATGAGGGGCAAAGGCCGGGAGGCTCTGCAACTAGCTAGTTTGGAACTCAGCCGGGATATATATGGATTCGCCGTGCGTCCTCAACATTTGCAGCGGTATCGTGAGTATGCAACAATTTACAAGGAAGA
GGAAGGGGAAAGATCGGAAAGATGGCAGCACTTTCTAGAAACTTATGCCTGTTCTGGCCAACCATCTACCTCGGATTCCCCATCAAGTGAACAGTTGCAATCATCTGTTCAATCTCATCACAATGCAGATCCTAATGCTGCTACTCAAATGGAAGATTTTACTGGTAGCATGGTGAGTTCTCCCGACAATCTACCTAAGG
TAGATGATGTGAAACAGGACAAGGGAAACCATAAAATTAAAACATGGTCACAGATAAGACCATCTCTGGATGCCATAGAACAGAATCTGAGTTTCCGCATCAGGAAGAGGAGAATTGTTTCAGTTGTTAACAAGGATGCTAATAGTGGAAGCAAAAGTCCTTCTGTGGAGGATCTCGGGCTGTTAAAAGTTGGCAGTCCT
GTCTCTGAAGAGGATTCAGAGGAAGAGTTCTATGATGTGGAGCGATCAGATTCAATCCAGGATGCATCCTCAAATGATAGCACAGTAAGTGATTCTGCCGGAAATTCAGCCAGTCCTCGTGGATCATTTGCAGGGTCATGGGCTTGGAAAGAACTGGAGAGTCTTGTTCGTGGAGGTGTCCCTATGGCTCTTAGAAAAGA
GCTTTGGCAAGCTTTTGTTGGAACGGGGACACGGAGGATAGAGAACTATTATAATGAGTTACTTATGCTGGGAGGAGAAGAGGCGTCCAGTAGAACAAAAGATGGTGGTCTTCTAAGCAGTACTACCACTAATGCTATTGTTCAAACAGGGGTTGCTGAGAAATGGAAAAGCCAGATTGAGAAGGATTTGCCTCGAACAT
TTCCAGGTCATCCAGCACTGGATGAAGATGGTCGAAATGCTTTGAGACGACTGCTGACAGGATATGCACGCCATAATCCATCAGTCGGATATTGCCAGGCAATGAATTTTTTTGCTGGGTTGCTTTTGCTATTGATGCCAGAGGAAAATGCATTCTGGACTTTAACGGGCATCATTGATGAATACTTTGATGGATACTAT
TCAGAGAAGATGGTGGAAGCTCAGGTGGACCAACTTGTTTTTGAAGATTTGGTTCGAGAATCCTTTCCTAGGCTGGTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATATTTTACCTTGGGAGAGTGTTTTGAGAGTATGGGATGTCCTTTTGTACCA
AGGAAATCGAACCATGCTGTTTCGCACTGCTCTTGCACTTATGGAGTTATATGGCCCTGCACTGGTCACAACAAAAGATGCAGGAGATGCAGTTACTCTGATGCAATCTCTTGCAGGCTCAACATTTGATAGCAGCCAGCTTGTTTTAACAGCTTGCATGGGGTATCAGGCAGTAGATGAGACTAGGTTGCAAGACTTGC
GAGAGAAGCATCGTCCCACAGTATTAGTTGCTCTCCAAGAACGGGATAAAGATCCTCGTCTCTGGAGGAGCTCTAAAGGCCTTGCATCTAAGCTGTATAATGGTGACCATGAAGAAGATGCATCTATAAGAGAGGGAAAGCTTCTAGAAGGTACTGTCAACAGGGAAAATGGTGATTCAGATGGGAATTTAAGTTTGACA
AGAAGAGGGAGTTTCGAGGAAAATGATCTGGATAACTTGAGTAATGGCTTCATAGATAATGATAATACAATTTCCGTTGTGAACCTTCAAGAACAGGTAAAGTGGTTGAAAAACGAATTATGTATGGCTTTGGAGGAGAAAAGATCTGCGACATTAAGGGCGGAGGAACTAGAGACAGCATTAGTGGAGATGGTGAAAGA
GGATAACAGGCGACTTCTTAGTGCAAAGCTAGAGCAGGTGGAATCTGAGATGGAGAACCTGCGGCAAGTTGTAATAGAGAAGGAGGAGCAAGAACGTGCAATGCTTCAGGTGATGATGCGAATAGAACAAGAGCAAAGGCTTACAGAGGATGCACGTCTATTCGCAGAGCAGGATGCAGCTGCACAACGACATGCTGCAA
ATATGCTCCAGGAAAAGTATGAAGAGGCAATGAACCAACTTGCTGCGATGGAAAAGAGAGCCATTATGGCAGAAAGCATGTTGGAGGCTACATTGCAGTGTCATGCTAGTCCACTTACTTCATCGAAAAAGATAGTTGATTCTCCATCTACACGTGAAGAATCATCATCAATGCTGCAAAATTCATTGCAAAGAGTTGAA
GGTGTAGATGCTTCACCTATTCATAGTAATCGGGAAATCCCACCGGAACAGTCTCCAAGAAAACCAGGTTTACTTTCCCGTCCATTTGGGCTTAACTGGCGTGATAGGAACAAGACGAAGTCAGGCAACCTTGATCCTCCAGCAATCCCATCTGGCGTAGCTAGTAGCTTAGAACATAAGCTTGACTCACCTACAAATGT
GCATAGCAATTATCAGTTGGTTCAAGATGACTCAAATGAATTTTCAGATGTGGGTGGTTCAGGAATTAAGATGAATCAAAGTTAGTATCATAAATACCAGCTTCCGTGGAAACATATTCGTCTGATTGAATTGCAGGGGCAGTTTCCCAACTTAAAGGCTCAGCGTTTACATCTCATTTGTAGAGAAGACACGGTTGGAG
AACGAATGTGCATGGTTTTCATCTAAATTCTTCAGGCTTGAAGTAGATTTCTTTAGATCGATTCTACTGAATGAGGTGCTTAAGATCAAAACCTTCTTTGTATTCCAAATTACCTCAGGGTTTCAGGGTATCCAAAACCATGACATGTAATAGTGTGCGCCAGAAAGCTTCAAACTCGATATTTCTTTGTAAATCCCTTA
CAGCATAGAGCAGATTCTCGTGTACTTCATGATTCATACAACTAATGTAATTTAGACCCAACTATGTCTCTTGGGATTGGACTTCACCATTTGAAACTCTTGATTATCATATTGCAGCTCCATTCTGGCTTGTCTTTAGAGAAAATGGAGTTTTAATAATGTGCTGCATGATGTGGATCATGCGTAAGTATCTACATGCT
GGATAAACAAGTTTCACAATGTCAGTTTCTATGCATTTCAAGTTTCAACCATGAAGGTATAGTGAGAAAGTAGTACTTGAATCATTTGATAATGGAAATCATTTGGTTTTATGTTGTTTCTTTATATTTCAGCATTTCAGCCCGTGATTCCTTTAATTAAGTATATGAAAAAAA
>TRINITY_DN111988_c3_g1_i14 from sample A3 / Example unspliced isoform:TCGAGAATCCTTTCCTAGGCTGGgtaattcatttctttgaagttgtagttagtcattctcccatccaattgagttttatcatccatgtaagactatgcttatctgcatgttatattttaatgcagTTGCACACTTTGACAAATTGGGAGTGCAAGTGGCATGGGTCACTGGACCATGGTTCCTTTCAATTTTTGTGAATA
TTTTACCTTGGGAGAGTGGTACGTATTCATTCTAGCTTCTCTTGGCAAGGTTGTCAAATATGTTTATGGTTTTTCTATTGTTAGATTTTGACTTCTACTTTTGAGGGTTTAGCAATATAAATTGTTTTTGTTCTTAGTTTTAGTAATAAATTTTAAAATTATAAATGTCCTTTAGTGGTCAAAGCTGACTGGTGGGAGTG
TAAAAAGGAAAAAGGTAAGTGAACTTTGGATATGCTAAAGCATCTACGTGATAATTGCTAGAGAATAAAAGAAAATGACTATATAGTATATAGCAATGTTACAAATATCGGCGCGGTGCGGAAATTGGCAGGATCCAGGAAACATCGTCTCGGGATATCTCGGCAGAACATCGGCAAAAATCAGCAAACTTAAAAAACAC
AAAAATATTCATTTTTTTTCAATTTT