sp|A7KTC5|PHT11_PETHY ----> Low affinity inorganic phosphate transporter 1
Intron 1 GTAAATTTAA ... GATATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.61 | 13 | 5 | 3.3 |
| A2 | 22.06 | 7 | 2.7 | 1.3 |
| A3 | 36.11 | 7 | 8 | 0 |
| A4 | 34.44 | 2 | 1.7 | 0.7 |
| A5 | 100 | 0 | 5 | 3.3 |
| A6 | 29.04 | 10 | 4.3 | 4 |
| A7 | 40.36 | 23 | 21.3 | 10 |
| A8 | 36.51 | 4 | 4 | 0.7 |
| A9 | 46.55 | 16 | 18 | 10.3 |
| A10 | 38.67 | 16 | 11 | 9.3 |
>TRINITY_DN42078_c0_g1_i2 from sample A9 / Example spliced isoformGTTAAGCATCAAGAAGAAGCGTAGGGAACTCGACAGAGATACCTCCATGCTCGGCTCTCGGTTTCATCAAATGAGAACTAAATAAGAATCGAAGAATAGCGACAAATAATGGACTTGATCTGTGAATTTTGACCCGTTGTCGAGTCTACGTTCACGGGCTTAGATATTCTGTATTTGCCTTTTGCCGATTTTCATCATTG
GTTTTCTCAACAGTCAAAAGATTTTCGAAAGAAAGCTTGGAAGCAAGGTTGGGATCATGGCAAAAAAATCAACTGGCAGTATTAAGTGCCTTGGACCTCGCAAAAACGCAATGGTACCACTTTACTGCAATCATAATTGCAGGAATGGGCTTCTTCACGGATGCTTATGACTTGTTCTGTATCTCAACCGTCACGAAGCT
CCTTGGAAGGATTTATTACTTCGATCCGAACAGCAACCGTCCTGGTACCCTTCCTCCGCATGTCTTGGCCGCCGTGAACGGGGTAGCTTTATGCGGAGCAATTGCAGGACAGCTTTTCATTGGTTGGCTGGGCGACAAAATGGGGCGAAGGAAAGTCTATGGAATAACTCTCATGATCATGGTCATTACCGCCATAGCAT
CTGGCCTTTCTTTCGGCAAAACAGCCAAATCCGTAATTACCACGCTCTGCTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGTGGAGATTATCCTTTATCCGCTACCATTATGTCTGAGTATGCCAACCAGAGAACCCGAGGGGCGTTCATCGCAGCAGTGTTTGCCCTGCAAGGGTTTGGGATTCTAGCCGGCGGTGCT
GTGGCCATTATCGTCTCTGTAGGATTCAAGAACAAGTACGAACGCCCTGCATACACGGTCGATCTTCCACCACATTCGACCGTCTCTCAAGCCGATTATGTATGGCGGATCATTCTTATGTTCGGGGCCATTCCCGCTGCGTTGACCTACTACTGGCGAATGAAAATGCCCGAAACGGCTCGCTACACGGCGCTCATTGC
AAGAGACGCAAATCAAGCCGCGGTCGACATGTCTAGCGTTCTTAACCTAGAAATCAAAGAAGACCAAAGGAGGGTTGAAGAAATTGCGAGGACCGAGCCGCAGTTCGGCTTATTTTCCAGAGAGTTCGCTAGGCGACACGGTTTGCGCCTACTGGGCACTGCAAGCACTTGGTTTCTCATAGACATCGTCTTCTACAGCC
AAAATCTGTTTTTCCAGAAGGACATTTTCACGAAATTGGGATGGATTCCGCAAGCCAAGAAGATGAACGCCATTGAAGAAGTTTATCGAATAGCAAAAGCGCAGTCGATTGTTGCTCTGTTATCGACAGTGCCGGGCTACTGGTTCACAGTGGCCTTCATTGAACGCATGGGTAGAAAACCAATTCAGCTGATGGGATTC
TTCTTCACGACACTCTTCTTGATCGCGCTTGCTATTACATACCACCATTGGGTAGAACAAAGAAAACCCACGGCCTTCATCGTACTTTATTGCTTGACCTTCTTCTTTTCGAACTTTGGTCCAAACGTCACCACAATCATCGTCCCAGCAGAAATCTTCCCGGCAAGGCTTCGTTCAACATGCCACGGCATATCTGGAGC
AGCAGGCAAAGCAGGAGCAATAATCGGAGCAGTCGGTTTTATCTACGGAGCTGACCCGAAAGGTATTGGTCTACGAAATTCTCTGATATCCTTTGCAGTAACAAGCGCTACAGGGTTCTTTTTCACCTTCCTGATTCCTGAAACAATGGGAAAATCGCTGGAAGAACTCTCAGGCGAGAATGATGAAGAGCAAGTAGTCC
AACTCGGACACTCCAGATTATCCTCACGCGGGAGTTCAGGCAGCACCATTCCAATTGAATAGTTGGTAAATCTCAGTTTTGCTGAACAAAGTTGTGTGAAATTATTTTACTAGTGAGCGCAACAAGCTAATATACGCTCCTCTGTAGCACTACTAAATGCTTAGTTTCCAGAACAATAGGACTAGATGTACATCTTAAGC
TTTGAGTGTGAATTTCCCATTCCAGTCCTTCCTTCTCATGTACACATTGTGTGAACTAAGTTAAATTGTGATTGTTTCATGGCCTTTCAGTTTGTGAACGCACAAATGGTTTCCCGTGCAGATTTATTAATCTTATCTAAATATGGATTGTAAGGTTAGAATTATAAAATTTATATTTTGTGGTATTAAAATAGTG
>TRINITY_DN42078_c0_g1_i12 from sample A9 / Example unspliced isoform:TCATCAAATGAGAACTAAATAAGGTAGGAATCCCATACATTTTTACTTCCGTCGATTCTAGTCTGTTATTTCGTCCCCTTTTTCAGGTTTCCGGACGTCTTTTGCTTCCAGAATCTAAGAATGGCCACAAATCATGGGCTCGATCTGTGAATTGTGTTATTTCGCCCTCTTTTTCATGTTTCCGGCCGTCTTTTGTTTCC
AGAATCGAAGAATAGCGACAAATAATGGACTTGATCTGTGAATTTTGACCCGTTGTCGAGTCTACGgtaaatttaaacttaagaaagaagaggcttagtgttcgatttttaacaaaatccgcactcgaacttcagtatttcagctgaaattcaccagacgcgtttaagttgttaaatgtggctatggtcgatattgcagT
TCACGGGCTTAGATATTCTGTATTTGCCTTTTGCCGATTTTCATCATTGGTTTTCTCAACAGTAGTCAAAAGATTTTCGAAAGAAAGCTTGGAAGCAAGGTTGGGATCATGGCAAAAAATCAACTGGCAGTATTAAGTGCCTTGGACCTCGCAAAAACGCAATGGTACCACTTTACTGCAATC
Intron 2 GTGTTTTGTT ... TGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.18 | 9 | 2 | 0 |
| A2 | 35.71 | 9 | 5 | 0 |
| A3 | 0 | 9 | 0 | 0 |
| A4 | 0 | 3 | 0 | 0 |
| A5 | 33.33 | 2 | 1 | 0 |
| A6 | 22.22 | 7 | 2 | 0 |
| A7 | 19.05 | 17 | 4 | 1 |
| A8 | 0 | 2 | 0 | 0 |
| A9 | 75 | 1 | 3 | 0 |
| A10 | 23.81 | 16 | 5 | 5 |
>TRINITY_DN42078_c0_g1_i9 from sample A9 / Example spliced isoformAGATGACACAAAATCGGGTCATATGTATTCTGATTAGTTTTTAAATTTTCGAATAACTTAAATTCAAGAGATATTAATTGGATTCTCATATTTATTAAAATTATTTCACTGTTTTTGACTTTTAAATAAGTTTATGTCTGTTGTTATTAGTGTATGAGTATGAGACTCTATGGATGCTCCATCGGTGGAATTGTATGTAT
ATCCCGTGTGCAAGTACACTAGACCAAAACTGTGAATCATCTTACAGGCTTAACTTGCCTCGATGGTTTCCACGAGCTTTCAGACTTGTCTCCGACGAAAATTCTTGCTTCATTTCCAAAGCATTTTCGGAATTCTGTGATACAATTCAAAATTGATCGGAAGTTTTTCAATCCTGCAGATTTCGCCGTTAGCAAGCAAA
GGATTTTCAGAAAGCCTATAATGGCGAAGAACGGGCTGGAAGTACTAAATGCCTTGGATGTGGCCAGAACGCAATGGTACCACTTTACTGCAATCGTTATTGCAGGCATGGGGTTTTTCACGGATGCCTATGACTTATTCTGCATTACCACAGTCACGAAGCTTCTTGGAAGGATCTATTACTTTGATCCGAAGAGCCCG
AGTCCCGGTACCTTACCTCCAAATGTCATGGCGGCCGTGACAGGGGTGGCCTTATGCGGAACACTTTCCGGGCAGCTTTTCTTTGGTTGGATGGGCGACAAAATCGGACGAAAGAAAGTTTATGGAGTAACGCTTATGCTTATGGTCACTACCTCCATAGCATCGGGTCTTTCTTTTGGCAGGACAGCTAAATCTGTAAT
GACCACGCTGTGCTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGAGGGGATTATCCTTTATCCGCCACTATTATGTCTGAGTATGCCAATAAGAAAACCCGAGGAGCGTTCATGGCCGCAGTGTTTGCTATGCAAGGCTTCGGAATTCTTGCTGGCGGTACCGTCTCCATTATCGTCTCTGCAGCTTTCAAGAACAAGT
ATAACCGCCCAGCATACCAGATTGATCGTCAGGGTTCGACCGCCTATGAAGCCGATCATGTATGGCGGATCATTCTCATGTTCGGAGCTGTTCCCGCTGCATTGACATACTACTGGCGAATGAAAATGCCCGAAACGGCTCGCTACACGGTGCTTGTCGCAGGAAACGTAAAGAAAGCTACGGCCGACATGTCGAAGGTT
CTTCGGGTAGAAATCGAAATAGACCAAGAGGCGGCTGTATGGAATGGGGCAGGGTACGTTTTATTTTCCAAAGATTTCGCAAGGCGACATGGCTGGCATCTATTAGGCACTGCAGGCACATGGTTTTTCTTGGACGCGGCCTTCTACAGCCAAAATCTTTTCCAAAAGGATATCTTCACTGCCGTGGGATGGCTTCCCAG
CCCTGAATCAATGAACGCCATAGAAGAAGTTTATGAAATAGCAAGAGCGCAGTCTATTGTTGCTCTGTGCTCGATAGTCCCAGGTTACTGGTTCACAGTGGCCTTCGTTGATCGTATTGGTAGAAAACCAATTCAACTGATGGGATTCTTCTTCATGACAGTCTTTATGCTCGCGCTTGCTATCCCATACAACCACTGGC
GAGGCACCAAATGTAACAGCCGCTACTGCGGCGGCAATCCTGTGGCCTTCGTTGTACTTTATTGCTTCACCTTCTTCTTTTCAAACTTTGGTCCAAATGCCACCACATTCATCGTCCCGGCAGAGATCTTCCCAGCAAGGCTGCGTTCTACATGCCACGGCATATCGGCCGCAGCAGGCAAAGCAGGAGCCATAGTCGGA
GCCTTCGGTTTTCTCTACGAGGTTAACAAAACAGACACAGGCCACCGCTCAGGGATTAGCCTTAAAACTTCTCTGTTTGTCTTAGCAGTAACAAATGCTATAGGTTTCTTTTTCACGTTCTTGATCCCTGAAACAATGGGGAAATCCCTGGAAGAGCTCTCTGGTGAGAATGATGAAGAGCAGATAGTCCAATTATCTCA
TGCACACAGGACTGCACCAATTGTATAGCTGGTAAATCTCAATTTCCTCAACTAAATTGTGTCAAATTATTTTCCTTAACTTACATGCAACAAATTGGATTTATAGTCGTCTGCAGCACTGGATTAAAAATTTGTTAAATGTGATTGTTCCATAGCCTTATGCGGAAATGTCGATAAACTGATCTGAATGTTTTAGGCTT
GCGTATTTGGGGATTCCAGTCTCGGCCCACATAAAATTACTGTGTCCATTCTTTAACTCTCAGGAAACATGTAATTCATCCGACCTTATCAAAACAATCCAAAGGGACCACTTGTTCTCTAAAATTGTTGGGTGTATATAAAAGGGATCCGTCGGATCACGCATATTCCCAGTTTTCTGAGGCCACCTAATAAAAACTGT
TTGACAGTACCGAAGAGAGCTGGTTAAGCAGTCGTGTCCACGCCAATAACATAAACAGGACAGGAGTTGGACAAGATCCGTCATCGTCATGGTTCGTGACGGAAAAATCATGAACCCGCCTGAGATTCTGGCCGGAAGCATAAGGTAGCAATGCACACGGGAGATTGACAACGTGCCCTACCTGTCACCTTATGTTCGTG
GCAGATTTTTTTATAAAGGTCCTCTCATGGCTTAGCTGGATTGATGGATATTTTTTAAATCTTTATACGAGTTTTACATCTACAGTCCAAAAATTTTTTTTTAATAAAATA
>TRINITY_DN42078_c0_g1_i7 from sample A9 / Example unspliced isoform:AGATGACACAAAATCGGGTCATATGTATTCTGATTAGTTTTTAAATTTTCGAATAACTTAAATTCAAGAGATATTAATTGGATTCTCATATTTATTAAAATTATTTCACTGTTTTTGACTTTTAAATAAGTTTATGTCTGTTGTTATTAGTGTATGAGTATGAGACTCTATGGATGCTCCATCGGTGGAATTGTATGTAT
ATCCCGTGTGCAAGTACACTAGACCAAAACTGTGAATCATCTTACAGGCTTAACTTGCCTCGATGGTTTCCACGAGCTTTCAGACTTGTCTCCGACGAAAATTCTTGCTTCATTTCCAAAGCATTTTCGGAATTCTGTGATACAATTCAAAATTGATCGGAAGTTTTTCAATCCTGCAGATTTCGCCGTTAGgtgttttg
tttctttaccaaaattgtcgaaaatattcgcattcttttcaaatgcctaatttcttgaatctgtgtaatgtcatccgagtaattaatttaatccattgcgcttgttgttgtgcagCAAGCAAAGGATTTTCAGAAAGCCTATAATGGCGAAGAACGGGCTGGAAGTACTAAATGCCTTGGATGTGGCCAGAACGCAATGG
TACCACTTTACTGCAATC
Intron 3 GTAGGAATCC ... TTGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 3.3 | 1 | 4 |
| A2 | 67.86 | 4.3 | 1 | 9 |
| A3 | 60.04 | 7.3 | 0 | 11 |
| A4 | 95.83 | 0.3 | 0 | 7 |
| A5 | 87.5 | 1 | 0 | 5 |
| A6 | 88.34 | 3.3 | 1 | 25 |
| A7 | 80.93 | 9.7 | 3 | 41 |
| A8 | 90.82 | 2.3 | 0 | 23 |
| A9 | 86.07 | 6.3 | 1 | 39 |
| A10 | 86.93 | 6.3 | 6 | 42 |
>TRINITY_DN42078_c0_g1_i2 from sample A9 / Example spliced isoformGTTAAGCATCAAGAAGAAGCGTAGGGAACTCGACAGAGATACCTCCATGCTCGGCTCTCGGTTTCATCAAATGAGAACTAAATAAGAATCGAAGAATAGCGACAAATAATGGACTTGATCTGTGAATTTTGACCCGTTGTCGAGTCTACGTTCACGGGCTTAGATATTCTGTATTTGCCTTTTGCCGATTTTCATCATTG
GTTTTCTCAACAGTCAAAAGATTTTCGAAAGAAAGCTTGGAAGCAAGGTTGGGATCATGGCAAAAAAATCAACTGGCAGTATTAAGTGCCTTGGACCTCGCAAAAACGCAATGGTACCACTTTACTGCAATCATAATTGCAGGAATGGGCTTCTTCACGGATGCTTATGACTTGTTCTGTATCTCAACCGTCACGAAGCT
CCTTGGAAGGATTTATTACTTCGATCCGAACAGCAACCGTCCTGGTACCCTTCCTCCGCATGTCTTGGCCGCCGTGAACGGGGTAGCTTTATGCGGAGCAATTGCAGGACAGCTTTTCATTGGTTGGCTGGGCGACAAAATGGGGCGAAGGAAAGTCTATGGAATAACTCTCATGATCATGGTCATTACCGCCATAGCAT
CTGGCCTTTCTTTCGGCAAAACAGCCAAATCCGTAATTACCACGCTCTGCTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGTGGAGATTATCCTTTATCCGCTACCATTATGTCTGAGTATGCCAACCAGAGAACCCGAGGGGCGTTCATCGCAGCAGTGTTTGCCCTGCAAGGGTTTGGGATTCTAGCCGGCGGTGCT
GTGGCCATTATCGTCTCTGTAGGATTCAAGAACAAGTACGAACGCCCTGCATACACGGTCGATCTTCCACCACATTCGACCGTCTCTCAAGCCGATTATGTATGGCGGATCATTCTTATGTTCGGGGCCATTCCCGCTGCGTTGACCTACTACTGGCGAATGAAAATGCCCGAAACGGCTCGCTACACGGCGCTCATTGC
AAGAGACGCAAATCAAGCCGCGGTCGACATGTCTAGCGTTCTTAACCTAGAAATCAAAGAAGACCAAAGGAGGGTTGAAGAAATTGCGAGGACCGAGCCGCAGTTCGGCTTATTTTCCAGAGAGTTCGCTAGGCGACACGGTTTGCGCCTACTGGGCACTGCAAGCACTTGGTTTCTCATAGACATCGTCTTCTACAGCC
AAAATCTGTTTTTCCAGAAGGACATTTTCACGAAATTGGGATGGATTCCGCAAGCCAAGAAGATGAACGCCATTGAAGAAGTTTATCGAATAGCAAAAGCGCAGTCGATTGTTGCTCTGTTATCGACAGTGCCGGGCTACTGGTTCACAGTGGCCTTCATTGAACGCATGGGTAGAAAACCAATTCAGCTGATGGGATTC
TTCTTCACGACACTCTTCTTGATCGCGCTTGCTATTACATACCACCATTGGGTAGAACAAAGAAAACCCACGGCCTTCATCGTACTTTATTGCTTGACCTTCTTCTTTTCGAACTTTGGTCCAAACGTCACCACAATCATCGTCCCAGCAGAAATCTTCCCGGCAAGGCTTCGTTCAACATGCCACGGCATATCTGGAGC
AGCAGGCAAAGCAGGAGCAATAATCGGAGCAGTCGGTTTTATCTACGGAGCTGACCCGAAAGGTATTGGTCTACGAAATTCTCTGATATCCTTTGCAGTAACAAGCGCTACAGGGTTCTTTTTCACCTTCCTGATTCCTGAAACAATGGGAAAATCGCTGGAAGAACTCTCAGGCGAGAATGATGAAGAGCAAGTAGTCC
AACTCGGACACTCCAGATTATCCTCACGCGGGAGTTCAGGCAGCACCATTCCAATTGAATAGTTGGTAAATCTCAGTTTTGCTGAACAAAGTTGTGTGAAATTATTTTACTAGTGAGCGCAACAAGCTAATATACGCTCCTCTGTAGCACTACTAAATGCTTAGTTTCCAGAACAATAGGACTAGATGTACATCTTAAGC
TTTGAGTGTGAATTTCCCATTCCAGTCCTTCCTTCTCATGTACACATTGTGTGAACTAAGTTAAATTGTGATTGTTTCATGGCCTTTCAGTTTGTGAACGCACAAATGGTTTCCCGTGCAGATTTATTAATCTTATCTAAATATGGATTGTAAGGTTAGAATTATAAAATTTATATTTTGTGGTATTAAAATAGTG
>TRINITY_DN42078_c0_g1_i12 from sample A9 / Example unspliced isoform:TCATCAAATGAGAACTAAATAAGgtaggaatcccatacatttttacttccgtcgattctagtctgttatttcgtcccctttttcaggtttccggacgtcttttgcttccagaatctaagaatggccacaaatcatgggctcgatctgtgaattgtgttatttcgccctctttttcatgtttccggccgtcttttgtttcc
agAATCGAAGAATAGCGACAAATAATGGACTTGATCTGTGAATTTTGACCCGTTGTCGAGTCTACGGTAAATTTAAACTTAAGAAAGAAGAGGCTTAGTGTTCGATTTTTAACAAAATCCGCACTCGAACTTCAGTATTTCAGCTGAAATTCACCAGACGCGTTTAAGTTGTTAAATGTGGCTATGGTCGATATTGCAGT
TCACGGGCTTAGATATTCTGTATTTGCCTTTTGCCGATTTTCATCATTGGTTTTCTCAACAGTAGTCAAAAGATTTTCGAAAGAAAGCTTGGAAGCAAGGTTGGGATCATGGCAAAAAATCAACTGGCAGTATTAAGTGCCTTGGACCTCGCAAAAACGCAATGGTACCACTTTACTGCAATC
Intron 4 GTTCTCAAAT ... TTCTCAACAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 2 | 2 | 7 |
| A2 | 100 | 0 | 1 | 2 |
| A3 | 33.33 | 1 | 0 | 1 |
| A4 | 100 | 0 | 6 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 100 | 0 | 0 | 4 |
| A7 | 50 | 1 | 2 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 40 | 3 | 3 | 1 |
| A10 | 50 | 2 | 3 | 1 |
>TRINITY_DN42078_c0_g1_i16 from sample A9 / Example spliced isoformGCAAGGAAGCCCGGGGAGCTGGACCTTCATACCTTCTTCATGCTCAGCTTTCAGTTCCCTCAAATAAAACCTAAATAAGAATCGAAGATTGGCCAGAAATCATGGGTTCGATCGGTAAATTTTGGTCTGGCGTCGAACGGAGAGGTTTTCTGGTCAAATTTTGGTTGAAATCCGCACTCGAAGTTCACTATTTGAGCTGA
AATTGACGAGAAGTTTTAGCTTGGCTAACTTTTTGAAGACTTTTTGGCCATGGCTTTTGAGTTGACCCTTTCGCCTTTTTTCAATGCCTTTCAGTTTCTATGATTTAGTTTCCTGCTTTGAAGAATTTCGCTGTACGAAGTAGGCAAACGATTTTCAGAAGAAAGCTTGGAAGCAAGGTTAGCATCATGGCGAAAAATCA
GCTGGAAGTCTTAAATGCCTTGGACTTGGCAAAAACGCAATGGTACCACTTTACTGCAATCGTTATTGCAGG
>TRINITY_DN42078_c0_g1_i19 from sample A9 / Example unspliced isoform:AATCGATTGTGTTTTTTCGACCTCCTTTTCAGGTTTTAGGCCGTGTTTTGATTCCAGAATCGAAGATTGGCCAGAAATCATGGGTTCGATCGGTAAATTTTGGTCTGGCGTCGAACGGAGAGGTTTTCTGGTCAAATTTTGGTTGAAATCCGCACTCGAAGTTCACTATTTGAGCTGAAATTGACGAGAAGTTTTAGgtt
ctcaaatatcactaaagctttcggaaagattgtggatattgcagttaacggtcttagattttgcgcatttggcttttgctgactttgctctctggttttctcaacagCTTGGCTAACTTTTTGAAGACTTTTTGGCCATGGCTTTTGAGTTGACCCTTTCGCCTTTTTTCAATGCCTTTCAGTTTCTATGATTTAGTTTC
CTGCTTTGAAGAATTTCGCTGTACGAAGTAGGCAAACGATTTTCAGAAGAAAGCTTGGAAGCAAGGTTAGCATCATGGCGAAAAATCAGCTGGAAGTCTTAAATGCCTTGGACTTGGCAAAAACGCAATGGTACCACTTTACTGCAATCGTTATTGCAGG
Intron 5 GTAGGAATCC ... TTCTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.24 | 21 | 1 | 13 |
| A2 | 9.09 | 30 | 1 | 3 |
| A3 | 14.58 | 41 | 0 | 7 |
| A4 | 14.29 | 36 | 0 | 6 |
| A5 | 22.73 | 17 | 0 | 5 |
| A6 | 23.71 | 74 | 1 | 23 |
| A7 | 17.49 | 151 | 3 | 32 |
| A8 | 10 | 72 | 0 | 8 |
| A9 | 22.63 | 188 | 1 | 55 |
| A10 | 16.83 | 168 | 6 | 34 |
>TRINITY_DN42078_c0_g1_i14 from sample A9 / Example spliced isoformGTTAAGCATCAAGAAGAAGCGTAGGGAACTCGACAGAGATACCTCCATGCTCGGCTCTCGGTTTCATCAAATGAGAACTAAATAAGTAGTCAAAAGATTTTCGAAAGAAAGCTTGGAAGCAAGGTTGGGATCATGGCAAAAAATCAACTGGCAGTATTAAGTGCCTTGGACCTCGCAAAAACGCAATGGTACCACTTTAC
TGCAATCATAATTGCAGGAATGGGCTTCTTCACGGATGCTTATGACTTGTTCTGTATCTCAACCGTCACGAAGCTCCTTGGAAGGATTTATTACTTCGATCCGAACAGCAACCGTCCTGGTACCCTTCCTCCGCATGTCTTGGCCGCCGTGAACGGGGTAGCTTTATGCGGAGCAATTGCAGGACAGCTTTTCATTGGTT
GGCTGGGCGACAAAATGGGGCGAAGGAAAGTCTATGGAATAACTCTCATGATCATGGTCATTACCGCCATAGCATCTGGCCTTTCTTTCGGCAAAACAGCCAAATCCGTAATTACCACGCTCTGCTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGTGGAGATTATCCTTTATCCGCTACCATTATGTCTGAGTATGCC
AACCAGAGAACCCGAGGGGCGTTCATCGCAGCAGTGTTTGCCCTGCAAGGGTTTGGGATTCTAGCCGGCGGTGCTGTGGCCATTATCGTCTCTGTAGGATTCAAGAACAAGTACGAACGCCCTGCATACACGGTCGATCTTCCACCACATTCGACCGTCTCTCAAGCCGATTATGTATGGCGGATCATTCTTATGTTCGG
GGCCATTCCCGCTGCGTTGACCTACTACTGGCGAATGAAAATGCCCGAAACGGCTCGCTACACGGCGCTCATTGCAAGAGACGCAAATCAAGCCGCGGTCGACATGTCTAGCGTTCTTAACCTAGAAATCAAAGAAGACCAAAGGAGGGTTGAAGAAATTGCGAGGACCGAGCCGCAGTTCGGCTTATTTTCCAGAGAGT
TCGCTAGGCGACACGGTTTGCGCCTACTGGGCACTGCAAGCACTTGGTTTCTCATAGACATCGTCTTCTACAGCCAAAATCTGTTTTTCCAGAAGGACATTTTCACGAAATTGGGATGGATTCCGCAAGCCAAGAAGATGAACGCCATTGAAGAAGTTTATCGAATAGCAAAAGCGCAGTCGATTGTTGCTCTGTTATCG
ACAGTGCCGGGCTACTGGTTCACAGTGGCCTTCATTGAACGCATGGGTAGAAAACCAATTCAGCTGATGGGATTCTTCTTCACGACACTCTTCTTGATCGCGCTTGCTATTACATACCACCATTGGGTAGAACAAAGAAAACCCACGGCCTTCATCGTACTTTATTGCTTGACCTTCTTCTTTTCGAACTTTGGTCCAAA
CGTCACCACAATCATCGTCCCAGCAGAAATCTTCCCGGCAAGGCTTCGTTCAACATGCCACGGCATATCTGGAGCAGCAGGCAAAGCAGGAGCAATAATCGGAGCAGTCGGTTTTATCTACGGAGCTGACCCGAAAGGTATTGGTCTACGAAATTCTCTGATATCCTTTGCAGTAACAAGCGCTACAGGGTTCTTTTTCA
CCTTCCTGATTCCTGAAACAATGGGAAAATCGCTGGAAGAACTCTCAGGCGAGAATGATGAAGAGCAAGTAGTCCAACTCGGACACTCCAGATTATCCTCACGCGGGAGTTCAGGCAGCACCATTCCAATTGAATAGTTGGTAAATCTCAGTTTTGCTGAACAAAGTTGTGTGAAATTATTTTACTAGTGAGCGCAACAA
GCTAATATACGCTCCTCTGTAGCACTACTAAATGCTTAGTTTCCAGAACAATAGGACTAGATGTACATCTTAAGCTTTGAGTGTGAATTTCCCATTCCAGTCCTTCCTTCTCATGTACACATTGTGTGAACTAAGTTAAATTGTGATTGTTTCATGGCCTTTCAGTTTGTGAACGCACAAATGGTTTCCCGTGCAGATTT
ATTAATCTTATCTAAATATGGATTGTAAGGTTAGAATTATAAAATTTATATTTTGTGGTATTAAAATAGTG
>TRINITY_DN42078_c0_g1_i12 from sample A9 / Example unspliced isoform:TCATCAAATGAGAACTAAATAAGgtaggaatcccatacatttttacttccgtcgattctagtctgttatttcgtcccctttttcaggtttccggacgtcttttgcttccagaatctaagaatggccacaaatcatgggctcgatctgtgaattgtgttatttcgccctctttttcatgtttccggccgtcttttgtttcc
agaatcgaagaatagcgacaaataatggacttgatctgtgaattttgacccgttgtcgagtctacggtaaatttaaacttaagaaagaagaggcttagtgttcgatttttaacaaaatccgcactcgaacttcagtatttcagctgaaattcaccagacgcgtttaagttgttaaatgtggctatggtcgatattgcagt
tcacgggcttagatattctgtatttgccttttgccgattttcatcattggttttctcaacagTAGTCAAAAGATTTTCGAAAGAAAGCTTGGAAGCAAGGTTGGGATCATGGCAAAAAATCAACTGGCAGTATTAAGTGCCTTGGACCTCGCAAAAACGCAATGGTACCACTTTACTGCAATC
Intron 6 GTTGGCCATC ... CTTGACTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 8.33 | 22 | 2 | 1 |
| A2 | 5.26 | 18 | 1 | 0 |
| A3 | 0 | 17 | 0 | 0 |
| A4 | 0 | 12 | 0 | 0 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 2.63 | 37 | 1 | 0 |
| A7 | 4.65 | 82 | 4 | 1 |
| A8 | 0 | 22 | 0 | 0 |
| A9 | 4.08 | 94 | 4 | 0 |
| A10 | 2.99 | 65 | 2 | 0 |
>TRINITY_DN42078_c0_g1_i2 from sample A9 / Example spliced isoformGTTAAGCATCAAGAAGAAGCGTAGGGAACTCGACAGAGATACCTCCATGCTCGGCTCTCGGTTTCATCAAATGAGAACTAAATAAGAATCGAAGAATAGCGACAAATAATGGACTTGATCTGTGAATTTTGACCCGTTGTCGAGTCTACGTTCACGGGCTTAGATATTCTGTATTTGCCTTTTGCCGATTTTCATCATTG
GTTTTCTCAACAGTCAAAAGATTTTCGAAAGAAAGCTTGGAAGCAAGGTTGGGATCATGGCAAAAAAATCAACTGGCAGTATTAAGTGCCTTGGACCTCGCAAAAACGCAATGGTACCACTTTACTGCAATCATAATTGCAGGAATGGGCTTCTTCACGGATGCTTATGACTTGTTCTGTATCTCAACCGTCACGAAGCT
CCTTGGAAGGATTTATTACTTCGATCCGAACAGCAACCGTCCTGGTACCCTTCCTCCGCATGTCTTGGCCGCCGTGAACGGGGTAGCTTTATGCGGAGCAATTGCAGGACAGCTTTTCATTGGTTGGCTGGGCGACAAAATGGGGCGAAGGAAAGTCTATGGAATAACTCTCATGATCATGGTCATTACCGCCATAGCAT
CTGGCCTTTCTTTCGGCAAAACAGCCAAATCCGTAATTACCACGCTCTGCTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGTGGAGATTATCCTTTATCCGCTACCATTATGTCTGAGTATGCCAACCAGAGAACCCGAGGGGCGTTCATCGCAGCAGTGTTTGCCCTGCAAGGGTTTGGGATTCTAGCCGGCGGTGCT
GTGGCCATTATCGTCTCTGTAGGATTCAAGAACAAGTACGAACGCCCTGCATACACGGTCGATCTTCCACCACATTCGACCGTCTCTCAAGCCGATTATGTATGGCGGATCATTCTTATGTTCGGGGCCATTCCCGCTGCGTTGACCTACTACTGGCGAATGAAAATGCCCGAAACGGCTCGCTACACGGCGCTCATTGC
AAGAGACGCAAATCAAGCCGCGGTCGACATGTCTAGCGTTCTTAACCTAGAAATCAAAGAAGACCAAAGGAGGGTTGAAGAAATTGCGAGGACCGAGCCGCAGTTCGGCTTATTTTCCAGAGAGTTCGCTAGGCGACACGGTTTGCGCCTACTGGGCACTGCAAGCACTTGGTTTCTCATAGACATCGTCTTCTACAGCC
AAAATCTGTTTTTCCAGAAGGACATTTTCACGAAATTGGGATGGATTCCGCAAGCCAAGAAGATGAACGCCATTGAAGAAGTTTATCGAATAGCAAAAGCGCAGTCGATTGTTGCTCTGTTATCGACAGTGCCGGGCTACTGGTTCACAGTGGCCTTCATTGAACGCATGGGTAGAAAACCAATTCAGCTGATGGGATTC
TTCTTCACGACACTCTTCTTGATCGCGCTTGCTATTACATACCACCATTGGGTAGAACAAAGAAAACCCACGGCCTTCATCGTACTTTATTGCTTGACCTTCTTCTTTTCGAACTTTGGTCCAAACGTCACCACAATCATCGTCCCAGCAGAAATCTTCCCGGCAAGGCTTCGTTCAACATGCCACGGCATATCTGGAGC
AGCAGGCAAAGCAGGAGCAATAATCGGAGCAGTCGGTTTTATCTACGGAGCTGACCCGAAAGGTATTGGTCTACGAAATTCTCTGATATCCTTTGCAGTAACAAGCGCTACAGGGTTCTTTTTCACCTTCCTGATTCCTGAAACAATGGGAAAATCGCTGGAAGAACTCTCAGGCGAGAATGATGAAGAGCAAGTAGTCC
AACTCGGACACTCCAGATTATCCTCACGCGGGAGTTCAGGCAGCACCATTCCAATTGAATAGTTGGTAAATCTCAGTTTTGCTGAACAAAGTTGTGTGAAATTATTTTACTAGTGAGCGCAACAAGCTAATATACGCTCCTCTGTAGCACTACTAAATGCTTAGTTTCCAGAACAATAGGACTAGATGTACATCTTAAGC
TTTGAGTGTGAATTTCCCATTCCAGTCCTTCCTTCTCATGTACACATTGTGTGAACTAAGTTAAATTGTGATTGTTTCATGGCCTTTCAGTTTGTGAACGCACAAATGGTTTCCCGTGCAGATTTATTAATCTTATCTAAATATGGATTGTAAGGTTAGAATTATAAAATTTATATTTTGTGGTATTAAAATAGTG
>TRINITY_DN42078_c0_g1_i15 from sample A9 / Example unspliced isoform:GTTAAGCATCAAGAAGAAGCGTAGGGAACTCGACAGAGATACCTCCATGCTCGGCTCTCGGTTTCATCAAATGAGAACTAAATAAGAATCGAAGAATAGCGACAAATAATGGACTTGATCTGTGAATTTTGACCCGTTGTCGAGTCTACGGTAAATTTAAACTTAAGAAAGAAGAGGCTTAGTGTTCGATTTTTAACAAA
ATCCGCACTCGAACTTCAGTATTTCAGCTGAAATTCACCAGACGCGTTTAAGTTGTTAAATGTGGCTATGGTCGATATTGCAGTTCACGGGCTTAGATATTCTGTATTTGCCTTTTGCCGATTTTCATCATTGGTTTTCTCAACAGgttggccatcgcttttgagttgatcatttccctatttttcactgccttctaatc
tgtaggatttcgtttcctgctttggaaaatttcgctgtgagaaattaaaggttcttctattgtctttggttgattttcaatgcccttgacttagTCAAAAGATTTTCGAAAGAA
Intron 7 GTAAATCTCA ... AATGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | -1 | 0 | 0 | 2 |
| A2 | 100 | 0 | 3 | 1 |
| A3 | 100 | 0 | 2 | 3 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 50 | 1 | 1 | 0 |
| A6 | 89.13 | 5 | 41 | 3 |
| A7 | 69.77 | 13 | 30 | 12 |
| A8 | 68.75 | 20 | 44 | 7 |
| A9 | 85.71 | 7 | 42 | 6 |
| A10 | 58.62 | 12 | 17 | 3 |
>TRINITY_DN45106_c1_g2_i1 from sample A7 / Example spliced isoformGAGACTCTATGGATGCTCCATCGGTGGAATTGTATGTATATCCCGTGTGCAAGTACACTAGACCAAAACTGTGAATCATCTTACAGGCTTAACTTGCCTCGATGGTTTCCACGAGCTTTCAGACTTGTCTCCGACGAAAATTCTTGCTTCATTTCCAAAGCATTTTCGGAATTCTGTGATACAATTCAAAATTGATCGGA
AGTTTTTCAATCCTGCAGATTTCGCCGTTAGCAAGCAAAGGATTTTCAGAAAGCCTATAATGGCGAAGAACGGGCTGGAAGTACTAAATGCCTTGGATGTGGCCAGAACGCAATGGTACCACTTTACTGCAATCGTTATTGCAGGCATGGGGTTTTTCACGGATGCCTATGACTTATTCTGCATTACCACAGTCACGAAG
CTTCTTGGAAGGATCTATTACTTTGATCCGAAGAGCCCGAGTCCCGGTACCTTACCTCCAAATGTCATGGCGGCCGTGACAGGGGTGGCCTTATGCGGAACACTTTCCGGGCAGCTTTTCTTTGGTTGGATGGGCGACAAAATCGGACGAAAGAAAGTTTATGGAGTAACGCTTATGCTTATGGTCACTACCTCCATAGC
ATCGGGTCTTTCTTTTGGCAGGACAGCTAAATCTGTAATGACCACGCTGTGCTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGAGGGGATTATCCTTTATCCGCCACTATTATGTCTGAGTATGCCAATAAGAAAACCCGAGGAGCGTTCATGGCCGCAGTGTTTGCTATGCAAGGCTTCGGAATTCTTGCTGGCGGTA
CCGTCTCCATTATCGTCTCTGCAGCTTTCAAGAACAAGTATAACCGCCCAGCATACCAGATTGATCGTCAGGGTTCGACCGCCTATGAAGCCGATCATGTATGGCGGATCATTCTCATGTTCGGAGCTGTTCCCGCTGCATTGACATACTACTGGCGAATGAAAATGCCCGAAACGGCTCGCTACACGGTGCTTGTCGCA
GGAAACGTAAAGAAAGCTACGGCCGACATGTCGAAGGTTCTTCGGGTAGAAATCGAAATAGACCAAGAGGCGGCTGTATGGAATGGGGCAGGGTACGTTTTATTTTCCAAAGATTTCGCAAGGCGACATGGCTGGCATCTATTAGGCACTGCAGGCACATGGTTTTTCTTGGACGCGGCCTTCTACAGCCAAAATCTTTT
CCAAAAGGATATCTTCACTGCCGTGGGATGGCTTCCCAGCCCTGAATCAATGAACGCCATAGAAGAAGTTTATGAAATAGCAAGAGCGCAGTCTATTGTTGCTCTGTGCTCGATAGTCCCAGGTTACTGGTTCACAGTGGCCTTCGTTGATCGTATTGGTAGAAAATCAATTCAACTGATGGGATTCTTCTTCATGACAG
TCTTTATGCTCGCGCTTGCTATCCCATACAACCACTGGCGAGGCACCAAATGTAACAGCCGCTACTGCGGCGGCAATCCTGTGGCCTTCGTTGTACTTTATTGCTTCACCTTCTTCTTTTCAAACTTTGGTCCAAATGCCACCACATTCATCGTCCCGGCAGAGATCTTCCCAGCAAGGCTGCGTTCTACATGCCACGGC
ATATCGGCCGCAGCAGGCAAAGCAGGAGCCATAGTCGGAGCCTTCGGTTTTCTCTACGAGGTTAACAAAACAGACACAGGCCACCGCTCAGGGATTAGCCTTAAAACTTCTCTGTTTGTCTTAGCAGTAACAAATGCTATAGGTTTCTTTTTCACGTTCTTGATCCCTGAAACAATGGGGAAATCCCTGGAAGAGCTCTC
TGGTGAGAATGATGAAGAGCAGATAGTCCAATTATCTCATGCACACAGGACTGCACCAATTGTATAGCTGGCTTGCGTATTTGGGGATTCCAGTCTCGGCCCACATAAAATTACTGTGTCCATTCTTTAACTCTCAGGAAACATGTAATTCATCCGACCTTATCAAAACAATCCAAAGGGACCACTTGTTCTCTAAAATT
GTTGGGTGTATATAAAAGGGATCCGTCGGATCACGCATATTCCCAGTTTTCTGAGGCCACCTAATAAAAACTGTTTGACAGTACCGAAGAGAGCTGGTTAAGCAGTCGTGTCCACGCCAATAACATAAACAGGACAGGAGTTGGACAAGATCCGTCATCGTCATGGTTCGTGACGGAAAAATCATGAACCCGCCTGAGAT
TCTGGCCGGAAGCATAAGGTAGCAATGCACACGGGAGATTGACAACGTGCCCTACCTGTCACCTTATGTTCGTGGCAGATTTTTTTATAAAGGTCCTCTCATGGCTTAGCTGGATTGATGGATATTTTTTAAATCTTTATACGAGTTTTACATCTACAGTCCAAAAATTTTTTTTTAATAAAATAAAAATTTGCGATCAC
TTTGTCACATATAAAGGTAAAAATAATATAAA
>TRINITY_DN45106_c1_g2_i2 from sample A7 / Example unspliced isoform:GAGACTCTATGGATGCTCCATCGGTGGAATTGTATGTATATCCCGTGTGCAAGTACACTAGACCAAAACTGTGAATCATCTTACAGGCTTAACTTGCCTCGATGGTTTCCACGAGCTTTCAGACTTGTCTCCGACGAAAATTCTTGCTTCATTTCCAAAGCATTTTCGGAATTCTGTGATACAATTCAAAATTGATCGGA
AGTTTTTCAATCCTGCAGATTTCGCCGTTAGCAAGCAAAGGATTTTCAGAAAGCCTATAATGGCGAAGAACGGGCTGGAAGTACTAAATGCCTTGGATGTGGCCAGAACGCAATGGTACCACTTTACTGCAATCGTTATTGCAGGCATGGGGTTTTTCACGGATGCCTATGACTTATTCTGCATTACCACAGTCACGAAG
CTTCTTGGAAGGATCTATTACTTTGATCCGAAGAGCCCGAGTCCCGGTACCTTACCTCCAAATGTCATGGCGGCCGTGACAGGGGTGGCCTTATGCGGAACACTTTCCGGGCAGCTTTTCTTTGGTTGGATGGGCGACAAAATCGGACGAAAGAAAGTTTATGGAGTAACGCTTATGCTTATGGTCACTACCTCCATAGC
ATCGGGTCTTTCTTTTGGCAGGACAGCTAAATCTGTAATGACCACGCTGTGCTTTTTCCGATTCTGGCTCGGCTTCGGCATCGGAGGGGATTATCCTTTATCCGCCACTATTATGTCTGAGTATGCCAATAAGAAAACCCGAGGAGCGTTCATGGCCGCAGTGTTTGCTATGCAAGGCTTCGGAATTCTTGCTGGCGGTA
CCGTCTCCATTATCGTCTCTGCAGCTTTCAAGAACAAGTATAACCGCCCAGCATACCAGATTGATCGTCAGGGTTCGACCGCCTATGAAGCCGATCATGTATGGCGGATCATTCTCATGTTCGGAGCTGTTCCCGCTGCATTGACATACTACTGGCGAATGAAAATGCCCGAAACGGCTCGCTACACGGTGCTTGTCGCA
GGAAACGTAAAGAAAGCTACGGCCGACATGTCGAAGGTTCTTCGGGTAGAAATCGAAATAGACCAAGAGGCGGCTGTATGGAATGGGGCAGGGTACGTTTTATTTTCCAAAGATTTCGCAAGGCGACATGGCTGGCATCTATTAGGCACTGCAGGCACATGGTTTTTCTTGGACGCGGCCTTCTACAGCCAAAATCTTTT
CCAAAAGGATATCTTCACTGCCGTGGGATGGCTTCCCAGCCCTGAATCAATGAACGCCATAGAAGAAGTTTATGAAATAGCAAGAGCGCAGTCTATTGTTGCTCTGTGCTCGATAGTCCCAGGTTACTGGTTCACAGTGGCCTTCGTTGATCGTATTGGTAGAAAATCAATTCAACTGATGGGATTCTTCTTCATGACAG
TCTTTATGCTCGCGCTTGCTATCCCATACAACCACTGGCGAGGCACCAAATGTAACAGCCGCTACTGCGGCGGCAATCCTGTGGCCTTCGTTGTACTTTATTGCTTCACCTTCTTCTTTTCAAACTTTGGTCCAAATGCCACCACATTCATCGTCCCGGCAGAGATCTTCCCAGCAAGGCTGCGTTCTACATGCCACGGC
ATATCGGCCGCAGCAGGCAAAGCAGGAGCCATAGTCGGAGCCTTCGGTTTTCTCTACGAGGTTAACAAAACAGACACAGGCCACCGCTCAGGGATTAGCCTTAAAACTTCTCTGTTTGTCTTAGCAGTAACAAATGCTATAGGTTTCTTTTTCACGTTCTTGATCCCTGAAACAATGGGGAAATCCCTGGAAGAGCTCTC
TGGTGAGAATGATGAAGAGCAGATAGTCCAATTATCTCATGCACACAGGACTGCACCAATTGTATAGCTGgtaaatctcaatttcctcaactaaattgtgtcaaattattttccttaacttacatgcaacaaattggatttatagtcgtctgcagcactggattaaaaatttgttaaatgtgattgttccatagccttat
gcggaaatgtcgataaactgatctgaatgttttagGCTTGCGTATTTGGGGATTCCAGTCTCGGCCCACATAAAATTACTGTGTCCATTCTTTAACTCTCAGGAAACATGTAATTCATCCGACCTTATCAAAACAATCCAAAGGGACCACTTGTTCTCTAAAATTGTTGGGTGTATATAAAAGGGATCCGTCGGATCACG
CATATTCCCAGTTTTCTGAGGCCACCTAATAAAAACTGTTTGACAGTACCGAAGAGAGCTGGTTAAGCAGTCGTGTCCACGCCAATAACATAAACAGGACAGGAGTTGGACAAGATCCGTCATCGTCATGGTTCGTGACGGAAAAATCATGAACCCGCCTGAGATTCTGGCCGGAAGCATAAGGTAGCAATGCACACGGG
AGATTGACAACGTGCCCTACCTGTCACCTTATGTTCGTGGCAGATTTTTTTATAAAGGTCCTCTCATGGCTTAGCTGGATTGATGGATATTTTTTAAATCTTTATACGAGTTTTACATCTACAGTCCAAAAATTTTTTTTTAATAAAATAAAAATTTGCGATCACTTTGTCACATATAAAGGTAAAAATAATATAAA