sp|O64702|HMG14_ARATH ----> High mobility group B protein 14

Intron 1 GTAAGTATTT ... CAATTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	19.29	113	32	22
A2	18.75	156	44	28
A3	22.58	120	33	37
A4	13.58	35	8	3
A5	24.73	35	13	10
A6	15.86	61	15	8
A7	21.99	589	191	141
A8	17.62	505	114	102
A9	20.13	510	139	118
A10	21.91	677	229	151

>TRINITY_DN36311_c0_g1_i1 from sample A9 / Example spliced isoform

CAAGAACATGATGTAATCTCCATCAATTAAGACGGCTAGAAGTTTTAGCTGTATGAAAATAAAACACGATTAGCTGATCAGGATTGTCCCATGTCTGTCAAAAAGGTCGAATTCTGAAAGCACACGGACAAGCCAGAGAGTGAGCGGTGACCGGGAGACGAGAGTTTTGTTATCTTTCACCTAGGTGCCGTTTTTGAGGA
AGCAGGCGAAGAATGAAGCCTAAGAAGCGAAGTGCAAGTGCAGTTAAAGGCTCAGGGAAAAAGGATCCCAAGGATTTAAAATCTGTTCAGAAGAACAGAGTACTAAGAGTGAAGAAAAAGGAAGATGAGCAGACAGGCAAAGGCAAAGGGAAAGGCAAAGGCAGGCAGAAGAAGCAGCAGCAGAAACCGAAAGAGAAGAA
ACCTAAAATGGAAAAGGACCCCAACCTACCCAAGAAGCCAGCCACTGCCTTCTTCTATTATATGGAGAAATTTCGGAAAACCTATCAAGAGGAGAATCCAGGAGTCACAGGAATGAGACAAATTGGTATAGCTTGTGGTGTCAAGTGGAAAGAAATGACATATGAGGAGAAGGCCCCATACTATGATATAGCAACACAAA
AGCGAGCAGAGTATGAGAAAATTCTGGCAGCATACAGAAAGAAGAAGGAGTCTGGCGAGGAAGTTGAAGCACATCAGGGCCCAGGCAAAACAAATTTGGAGATAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGTATAAATGATGACAAGGAA
GGAAGAGAGGAGGCTGGTGAGGAAGTGGAGGCACATCAGGGGCTGGACAAAACAAATTCAGAGATAAATGATGACAAGGAAGGTGGAGAGCAGGAGGATATGGAATGATACTACATGCATGAGGTGCACTTTTCATATGGAACCTGTAGAATCCGATAGTGGCACTTAATTGGTGCTGGAGAGACTCCTGGTTAAAAGTC
CTGATAATATCTTTAATGAATGGCTACAGTCTGACTTCTGCTTCCCAAAACACAACAGGATGTTGTTGATCCAACTTAGTTCCTTTGGAACCTGGACATAGCTATGGATTAGAAACAATAAATATCAAGATTGCTTGATATCAATTTTGTTTTGTCAAACTTGAGGCTTGCTTTGGACTAATTAATGCTCAATGAAATGA
CTGTTGTGTCCTTTTTCTTTTGCCTATTCTATGTCAACCTTGGTGTCATAGCTGCCTGTATGGTTTCTGTTTGAATACCATGTGACTACAACATATTAAAGTTGTAATCTACACATCAACGCAAATAGGTTCAATGAATGAAATGCAACTTGTTCTGACAACTAGAGATGGAAACTATTACAGAAGTGATGGATGCCATT
TTGCAGAACTCAACACTCCGGAGTTTTTCGATCTTAAATTTCTCCGTTCTTGTGAAATTTATATCAGATTGGGTGTTCTTAAGAAACTTTGATTTTGAGTCAGTAAACATGCATTCTTACAATTAGTACTATTTCTGACGAGTATTAGATATTTAAAAATATTATGCTGTTGTGCATGTTTTTGCCACATGTTTATAACT
TCACCTGTGCCTGTATGTTTGTTTGCAAGTACTGAAGTGGCAGCAGGTATGTTCAAACTCCTACTATAATTACTGTCA

>TRINITY_DN36311_c0_g1_i3 from sample A9 / Example unspliced isoform:

CAAGAACATGATGTAATCTCCATCAATTAAGACGGCTAGAAGTTTTAGCTGTATGAAAATAAAACACGATTAGCTGATCAGGATTGTCCCATGTCTGTCAAAAAGGTCGAATTCTGAAAGCACACGGACAAGCCAGAGAGTGAGCGGTGACCGGGAGACGAGAGTTTTGTTATCTTTCACCTAGGTGCCGTTTTTGAGGA
AGCAGGCGAAGAATGAAGCCTAAGAAGCGAAGTGCAAGTGCAGTTAAAGGCTCAGGGAAAAAGGATCCCAAGGATTTAAAATCTGTTCAGAAgtaagtattttcttgctaggagtggcagtatacacggtaaatatatcaattttcttgctaggagtggcagtatacacggtaaatatatcaatttctatattcaacttg
tatatatatgtatgcggggttcaatttgcagGAACAGAGTACTAAGAGTGAAGAAAAAGGAAGATGAGCAGACAGGCAAAGGCAAAGGGAAAGGCAAAGGCAGGCAGAAGAAGCAGCAGCAGAAACCGAAAGAGAAGAAACCTAAAATGGAAAAGGACCCCAACCTACCCAAGAAGCCAGCCACTGCCTTCTTCTATTAT
ATGGAGAAATTTCGGAAAACCTATCAAGAGGAGAATCCAGGAGTCACAGGAATGAGACAAATTGGTATAGCTTGTGGTGTCAAGTGGAAAGAAATGACATATGAGGAGAAGGCCCCATACTATGATATAGCAACACAAAAGCGAGCAGAGTATGAGAAAATTCTGGCAGCATACAGAAAGAAGAAGGAGTCTGGCGAGGA
AGTTGAAGCACATCAGGGCCCAGGCAAAACAAATTTGGAGATAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGTATAAATGATGACAAGGAAGGAAGAGAGGAGGCTGGTGAGGAAGTGGAGGCACATCAGGGGCTGGACAAAACAAATTCAG
AGATAAATGATGACAAGGAAGGTGGAAAGGAAGCTGGCGAGGAAGGCGGCACATCAAATTTGGAGTTAAATGATGACAAGGAAGGTGGAGAGCAGGAGGATATGGAATGATACTACATGCATGAGGTGCACTTTTCATATGGAACCTGTAGAATCCGATAGTGGCACTTAATTGGTGCTGGAGAGACTCCTGGTTAAAAG
TCCTGATAATATCTTTAATGAATGGCTACAGTCTGACTTCTGCTTCCCAAAACACAACAGGATGTTGTTGATCCAACTTAGTTCCTTTGGAACCTGGACATAGCTATGGATTAGAAACAATAAATATCAAGATTGCTTGATATCAATTTTGTTTTGTCAAACTTGAGGCTTGCTTTGGACTAATTAATGCTCAATGAAAT
GACTGTTGTGTCCTTTTTCTTTTGCCTATTCTATGTCAACCTTGGTGTCATAGCTGCCTGTATGGTTTCTGTTTGAATACCATGTGACTACAACATATTAAAGTTGTAATCTACACATCAACGCAAATAGGTTCAATGAATGAAATGCAACTTGTTCTGACAACTAGAGATGGAAACTATTACAGAAGTGATGGATGCCA
TTTTGCAGAACTCAACACTCCGGAGTTTTTCGATCTTAAATTTCTCCGTTCTTGTGAAATTTATATCAGATTGGGTGTTCTTAAGAAACTTTGATTTTGAGTCAGTAAACATGCATTCTTACAATTAGTACTATTTCTGACGAGTATTAGATATTTAAAAATATTATGCTGTTGTGCATGTTTTTGCCACATGTTTATAA
CTTCACCTGTGCCTGTATGTTTGTTTGCAAGTACTGAAGTGGCAGCAGGTATGTTCAAACTCCTACTATAATTACTGTCA

Intron 2 GTGGAAAGGA ... GACAAGGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	67.19	52	121	92
A2	64.63	42	71.5	82
A3	64.53	61	109	113
A4	81.82	8	33	39
A5	64	9	16	16
A6	70.91	56	109	164
A7	74.1	308	885	877
A8	72.22	373	914	1025
A9	71.62	302	743	781.3
A10	71.44	307	768	768

>TRINITY_DN36311_c0_g1_i1 from sample A9 / Example spliced isoform

CAAGAACATGATGTAATCTCCATCAATTAAGACGGCTAGAAGTTTTAGCTGTATGAAAATAAAACACGATTAGCTGATCAGGATTGTCCCATGTCTGTCAAAAAGGTCGAATTCTGAAAGCACACGGACAAGCCAGAGAGTGAGCGGTGACCGGGAGACGAGAGTTTTGTTATCTTTCACCTAGGTGCCGTTTTTGAGGA
AGCAGGCGAAGAATGAAGCCTAAGAAGCGAAGTGCAAGTGCAGTTAAAGGCTCAGGGAAAAAGGATCCCAAGGATTTAAAATCTGTTCAGAAGAACAGAGTACTAAGAGTGAAGAAAAAGGAAGATGAGCAGACAGGCAAAGGCAAAGGGAAAGGCAAAGGCAGGCAGAAGAAGCAGCAGCAGAAACCGAAAGAGAAGAA
ACCTAAAATGGAAAAGGACCCCAACCTACCCAAGAAGCCAGCCACTGCCTTCTTCTATTATATGGAGAAATTTCGGAAAACCTATCAAGAGGAGAATCCAGGAGTCACAGGAATGAGACAAATTGGTATAGCTTGTGGTGTCAAGTGGAAAGAAATGACATATGAGGAGAAGGCCCCATACTATGATATAGCAACACAAA
AGCGAGCAGAGTATGAGAAAATTCTGGCAGCATACAGAAAGAAGAAGGAGTCTGGCGAGGAAGTTGAAGCACATCAGGGCCCAGGCAAAACAAATTTGGAGATAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGTATAAATGATGACAAGGAA
GGAAGAGAGGAGGCTGGTGAGGAAGTGGAGGCACATCAGGGGCTGGACAAAACAAATTCAGAGATAAATGATGACAAGGAAGGTGGAGAGCAGGAGGATATGGAATGATACTACATGCATGAGGTGCACTTTTCATATGGAACCTGTAGAATCCGATAGTGGCACTTAATTGGTGCTGGAGAGACTCCTGGTTAAAAGTC
CTGATAATATCTTTAATGAATGGCTACAGTCTGACTTCTGCTTCCCAAAACACAACAGGATGTTGTTGATCCAACTTAGTTCCTTTGGAACCTGGACATAGCTATGGATTAGAAACAATAAATATCAAGATTGCTTGATATCAATTTTGTTTTGTCAAACTTGAGGCTTGCTTTGGACTAATTAATGCTCAATGAAATGA
CTGTTGTGTCCTTTTTCTTTTGCCTATTCTATGTCAACCTTGGTGTCATAGCTGCCTGTATGGTTTCTGTTTGAATACCATGTGACTACAACATATTAAAGTTGTAATCTACACATCAACGCAAATAGGTTCAATGAATGAAATGCAACTTGTTCTGACAACTAGAGATGGAAACTATTACAGAAGTGATGGATGCCATT
TTGCAGAACTCAACACTCCGGAGTTTTTCGATCTTAAATTTCTCCGTTCTTGTGAAATTTATATCAGATTGGGTGTTCTTAAGAAACTTTGATTTTGAGTCAGTAAACATGCATTCTTACAATTAGTACTATTTCTGACGAGTATTAGATATTTAAAAATATTATGCTGTTGTGCATGTTTTTGCCACATGTTTATAACT
TCACCTGTGCCTGTATGTTTGTTTGCAAGTACTGAAGTGGCAGCAGGTATGTTCAAACTCCTACTATAATTACTGTCA

>TRINITY_DN36311_c0_g1_i2 from sample A9 / Example unspliced isoform:

TGATGACAAGGAAGGTGGAGAGGTAAATGTTCTTCTATCTCCATTGTATTTATTATTTGTGGGTCTTTTGATCAATCGTGAAAGAGAGCCCTATATCATGATATAGCAACTCAAAAGTGAGCCAAGTATGAGAAAATTCTGGCAGCATACAGAAAGAAGAAGGAGTCTGGCGAGGAAGTTGAAGCACATCAGGGCCCAGG
CAAAACAAATTTGGAGATAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGTATAAATGATGACAAGGAAGGAAGAGAGGAGGCTGGTGAGGAAGTGGAGGCACATCAGGGGCTGGACAAAACAAATTCAGAGATAAATGATGACAAGGAAGgtg
gaaaggaagctggcgaggaaggcggcacatcaaatttggagttaaatgatgacaaggaagGTGGAGAGCAGGAGGATATGGAATGATACTACATGCATGAGGTGCACTTTTCATATGGAACCTGTAGAATCCGATAGTGGCACTTAATTGGTGCTGGAGAGACTCCTGGTTAAAAGTCCTGATAATATCTTTAATGAATG
GCTACAGTCTGACTTCTGCTTCCCAAAACACAACAGGATGTTGTTGATCCAACTTAGTTCCTTTGGAACCTGGACATAGCTATGGATTAGAAACAATAAATATCAAGATTGCTTGATATCAATTTTGTTTTGTCAAACTTGAGGCTTGCTTTGGACTAATTAATGCTCAATGAAATGACTGTTGTGTCCTTTTTCTTTTG
CCTATTCTATGTCAACCTTGGTGTCATAGCTGCCTGTATGGTTTCTGTTTGAATACCATGTGACTACAACATATTAAAGTTGTAATCTACACATCAACGCAAATAGGTTCAATGAATGAAATGCAACTTGTTCTGACAACTAGAGATGGAAACTATTACAGAAGTGATGGATGCCATTTTGCAGAACTCAACACTCCGGA
GTTTTTCGATCTTAAATTTCTCCGTTCTTGTGAAATTTATATCAGATTGGGTGTTCTTAAGAAACTTTGATTTTGAGTCAGTAAACATGCATTCTTACAATTAGTACTATTTCTGACGAGTATTAGATATTTAAAAATATTATGCTGTTGTGCATGTTTTTGCCACATGTTTATAACTTCACCTGTGCCTGTATGTTTGT
TTGCAAGTACTGAAGTGGCAGCAGGTATGTTCAAACTCCTACTATAATTACTGTCA

Intron 3 GTAATGTTCT ... TCCACTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.53	120	31	0
A2	11.25	71	9	0
A3	12.98	114	17	0
A4	16.67	35	7	0
A5	4.55	21	1	0
A6	16.67	110	22	1
A7	14.46	887	150	0
A8	12.72	926	135	1
A9	12.79	743	109	0
A10	13.3	763	117	0

>TRINITY_DN36619_c0_g1_i2 from sample A8 / Example spliced isoform

CGATGGTACTCACAATGGAGTGATTTGCAAGTGGCCAGTTCCTTTTCAAATTCACTTTTGTAATTTTGATTTGATTGCTGAGTTATATGCTTGCATCTTGTATGTGCTTTGCCTATTTATTCCTCTTATTGGTATGCACTACAAGTTGTAATACACTGTTGTATATTTTGTGATGCTGTTCAGTTAAAGAGTAAATGCCT
CGGACACTAAAGAAACGTGTTGGCAACTTTGTCAATTTTCATTACAATTTGTATTTCTGATTTACTCTTATGATTGGTGGCAGGAGAAGGCCCCATACTATGATATAGCAACACAAAAGCGAGCAGAGTATGAGAAAATTCTGGCAGCATACAGAAAGAAGGTGGTAGAAGTCTTTTCTTGTGATAAGTTCATGCTTGTT
TTGATGTTTGAGCCTAAGATATTTCTATGGATTTCCCTGGATTTCCACTTCAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGTATAAATGATGACAAGGAAGGAAGAGAGGAGGCTGGTGAGGAAGTGGAGGCACATCAGGGGCTGGACAAAACAAATTCAGAGATAAATGATGAC
AAGGAAGGTGGAAAGGAAGCTGGCGAGGAAGGCGGCACATCAAATTTGGAGTTAAATGATGACAAGGAAGGTGGAGAGCAGGAGGATATGGAATGATACTACATGCATGAGGTGCACTTTTCATATGGAACCTGTAGAATCCGATAGTGGCACTTAATTGGTGCTGGAGAGACTCCTGGTTAAAAGTCCTGATAATATCT
TTAATGAATGGCTACAGTCTGACTTCTGCTTCCCAAAACACAACAGGATGTTGTTGATCCAACTTAGTTCCTTTGGAACCTGGACATAGCTATGGATTAGAAACAATAAATATCAAGATTGCTTGATATCAATTTTGTTTTGTCAAACTTGAGGCTTGCTTTGGACTAATTAATGCTCAATGAAATGACTGTTGTGTCCT
TTTTCTTTTGCCTATTCTATGTCAACCTTGGTGTCATAGCTGCCTGTATGGTTTCTGTTTGAATACCATGTGACTACAACATATTAAAGTTGTAATCTACACATCAACGCAAATAGGTTCAATGAATGAAATGCAACTTGTTCTGACAACTAGAGATGGAAACTATTACAGAAGTGATGGATGCCATTTTGCAGAACTCA
ACACTCCGGAGTTTTTCGATCTTAAATTTCTCCGTTCTTGTGAAATTTATATCAGATTGGGTGTTCTTAAGAAACTTTGATTTTGAGTCAGTAAACATGCATTCTTACAATTAGTACTATTTCTGAC

>TRINITY_DN36619_c0_g1_i4 from sample A8 / Example unspliced isoform:

ATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGTATAAATGATGACAAGGAAGGAAGAGAGGAGGCTGGTGAGGAAGTGGAGGCACATCAGGGGCTGGACAAAACAAATTCAGAGATAAATGATGACAAGGAAGGTGGAAAGgtaatgttcttctat
ctccattatatgtgtgttctttgtgggcgttttgatcaatcgtcaaagagaaagccccattttatgatatagcaacacaaatccaagcagagtatgaaaaatttctggcagcatatagaaagaaggagataaaattcttttcttgtgatcaattcatgcttgtgttttgatgtttaagcctagcatattactatggattt
ccacttcagGAAGCTGGCGAGGAAGGCGGC

Intron 4 GTCAGCTTTT ... TTTCATCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	13.13	59	3.2	10.5
A2	9.66	71	5.7	8.5
A3	12.18	58	4.2	9
A4	17.95	25	1.7	7
A5	4.17	22	1	1
A6	9.72	49	3	5.5
A7	11.75	373.3	14.8	57
A8	11.9	357	15.7	55
A9	11.38	301	10.2	44
A10	11.35	334	17	49

>TRINITY_DN40235_c0_g1_i3 from sample A7 / Example spliced isoform

AATAACTTGTTATAGAGGCTATTTTGAGAATATCTTCCTTTATTTGATGATATCCATCATTTTAGATATTCTTTTAGATATAGCATGTATGTTGTCACAAGAACATGATGTAATCTCCATCAATTAAGACGGCTAGAAGTTTTAGCTGTATGAAAATAAAACACGATTAGCTGATCAGGATTGTCCCATGTCTGTCAAAA
AGGTCGAATTCTGAAAGCACACGGACAAGCCAGAGAGTGAGCGGTGACCGGGAGACGAGAGTTTTGTTATCTTTCACCTAGGTGCCGTTTTTGAGGAAGCAGGCGAAGAATGAAGCCTAAGAAGCGAAGTGCAAGTGCAGTTAAAGGCTCAGGGAAAAAGGATCCCAAGGATTTAAAATCTGTTCAGAAGAACAGAGTAC
TAAGAGTGAAGAAAAAGGAAGATGAGCAGACAGGCAAAGGCAAAGGGAAAGGCAAAGGCAGGCAGAAGAAGCAGCAGCAGAAACCGAAAGAGAAGAAACCTAAAATGGAAAAGGACCCCAACCTACCCAAGAAGCCAGCCACTGCCTTCTTCTATTATATGGAGAAATTTCGGAAAACCTATCAAGAGGAGAATCCAGGA
GTCACAGGAATGAGACAAATTGGTATAGCTTGTGGTGTCAAGTGGAAAGAAATGACATATGAGGAGAAGGCCCCATACTATGATATAGCAACACAAAAGCGAGCAGAGTATGAGAAAATTCTGGCAGCATACAGAAAGAAGAAGGAGTCTGGCGAGGAAGTTGAAGCACATCAGGGCCCAGGCAAAACAAATTTGGAGAT
AAATGATGACAAGGAAGGTGGAAAGGAAGCTGGCGAGGAAGGCGGCACATCAAATTTGGAGTTAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGGATAAATGATGACAAGGAAGGAAGAGAGGAGGCTTGTGAGGAAGTGGAGGCACATCAGG
GGCTGGACAAAACAAATTCAGAGATAAATGATGACAAGGAAGGTGGAAAGGAAGCTGGCGAGGAAGGCGGCACATCAAATTTGGAGTTAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGG

>TRINITY_DN40235_c0_g1_i2 from sample A7 / Example unspliced isoform:

TCTGGCTGTACCAGGGTCTTAAGCTTTTGTGGTGCTGAGATATGGTTTACTTGTGCAGGGAGAAATTTCGGAAAACCTATCAAGAGGAGAATCCAGGAGTCACAGGAATGAGACAAgtcagcttttcttgcttcatttccatccctttctatttatattggttttgattttttttttctcccaagtttcttatttattga
tatgctttcaaaattaaaactctctattgttctaactggttttcaaattctttcatccagATTGGTATAGCTTGTGGTGTCAAGTGGAAAGAAATGACATATGAGGAGAAGGCCCCATACTATGATATAGCAACACAAAAGCGAGCAGAGTATGAGAAAATTCTGGCAGCATACAGAAAGAAGAAGGAGTCTGGCGAGGA
AGTTGAAGCACATCAGGGCCCAGGCAAAACAAATTTGGAGATAAATGATGACAAGGAAGGTGGAAAGGAAGCTGGCGAGGAAGGCGGCACATCAAATTTGGAGTTAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACAAATTTGGGGATAAATGATGACAAGG
AAGGAAGAGAGGAGGCTTGTGAGGAAGTGGAGGCACATCAGGGGCTGGACAAAACAAATTCAGAGATAAATGATGACAAGGAAGGTGGAAAGGAAGCTGGCGAGGAAGGCGGCACATCAAATTTGGAGTTAAATGATGACAAGGAAGGTGGAGAGGAGGATGGCGAGGAAGTTGAGGCACATCAGGGGCTGGGCAAAACA
AATTTGGG