sp|Q9SVN5|SYMC_ARATH ----> Methionine--tRNA ligase, cytoplasmic


Intron 1 GTATTTTCAT ... AATTATTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A121.3359016
A22572024
A313.115308
A423.6442013
A512.92704
A619.93217054
A717.39266056
A820.89261.2069
A916.56257051
A1012.72233.2034



>TRINITY_DN111099_c0_g1_i2 from sample A2 / Example spliced isoform
AATGATAGGTATTTGGGATGCTTCACAATATGTACCTAAGCAAAATACAAGAAACAAATGAGAAAATATGGAAAAGGTAAGGAAGAAGAATAATGCTTACATGTAGGTTTTTATAATTTTTCTACAAAATTTCATCGGTTTTTCTTTAATGTATTTTATTTTATTTTCCCATTTCTTTATAATTGTAATGCTTATGATTT
AATAAGTTTTTGAGTTTTAGTTTAAAGTTGCTACGATTTTGACTTTTGATGGTGTGTACATAGGGCAGGAATGTGGTCGTCCTTGCCAATCTTAAGCCACGAAATATGCGGGGTGTCAAATCTAATGGAATGCTTCTGGCTGCCTCAGATGCATCTCATGAAAGTGTAGAGCTTCTTACACCTCCTCAAGGTTCTTGCCC
TGGTGAGAGGATTTGGTTTGGTTTGGAAGAAGAATCAAATGGTCAGTCTGATGCTGCATCGCCTAATCAGGTCCAAAAGAAAAAGTTATGGGAAACTGTGCAGCCTCACCTTAAGACATCCAATAATTGTGTGGCTATGTTTGGAGAAAGTCCAATGCGAACATCTTCTGGCTTGGTTTCTTGCAGATCCCTGAAGAATG
CTAACATTTCTTAATCAGGAACCAATGGTGTCCGCTGATGTAACATTTTTTCTCTGCAAGACGAGCATTGGATTTGTTTGTGGAGATTTTCAGTTGCCTTTTCTCTTCCTCTATACCTATATCCTGTGCTGGGTAGTCCAATTATATTGTTCCATTCTTCATCAGTGGTCTGTATTGTAGCTCTGCTTGTCTACCGGCTA
ATTAATCGAGAGGATTGAATGCTTCAATGTCAGCTACTGTCATCTCAAGGAACTATTTAGTTCCTACACTGGGTAATGAGATTGAAAATGAAATATTGAGTTGCCTACTGAAATTTATATGATCTGCAAATCATTTCGAGCTATATTTGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGCCTACTGAAATTTCTATGA
TCTGCAAATCATGAACATACATTTCGAGCTATACTAGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGCCTACTGAAATTTCTATGATCTGCAAATCATGAACATACATTTCGAGCTATACTAGTATCTTGAGAAAAAGACGGAAAAGGTCTTTTGGAGGGACCTTACAAACCGATTTATTGCTGTCAAAAGATCGTGT
CTTCGACATATATTGAAATCTTAATCACATTGAACGATGCATAGAATAAGTACTTGAACTGCAAGTAACCTTCTGTTATGTGTTTCAATGTGTTTACAAGTTTCAAATTCTTGGAAGTTATTGAGACTTAACGGAACGGCCCATCATTCAAAAATATTAACACGCAAAAATTCAAACAGATTAACGGCGAAC


>TRINITY_DN111099_c0_g1_i5 from sample A2 / Example unspliced isoform:
GATGCTGCATCGCCTAATCAGgtattttcattgtttttttcatttaaatgttatgtgtatgcttcgttgtattcatgtaagatgatatcaaccgaataaaacttgattcttttaattctagcattgtgatgaaatgcaacttgaatttacatttgaacattatgattataataggtcttaaacttcggtttttcttttga
cacaattattcag
GTCCAAAAGAAAAAGTTATGGGAAACTGTGCAGCCTCACCTTAAGACATCCAATAATTGTGTGGCTATGTTTGGAGAAAGTCCAATGCGAACATCTTCTGGCTTGGTTTCTTGCAGATCCCTGAAGAATGCTAACATTTCTTAATCAGGTTATGAATCCATAACTTCTCAAAACCTCCAATTGAAGT
CCTTGAACATTTTGTTAATTATCTTTATCAAACAACATGCGAAAATGATCCCTCCTTTCATGTTTCGTCATGCTATCTAATAATCATGTAGTAGCAGCAGCTCACATTAAGGAAATCAGGTTAGCAATATTATGCAATCAATGATCATTCTTTGGTGTTTCAGAAGGTGTCATGTAAGTAGTCCCAATTGTTGCTGGTGT
GCTTCTTTGATTGAAAGAGGGGTTAAGTATATATCTTACTGAGGTAGTTGGTTTTGATAAATACAAATGAAATGTCTTTTATTTGTATTATACTATTTGCCTAAAATCATGATTCATTTAATAGATGTCCAAGTTTCTTACATTCTTTGTGTGTGTTTCATTTGGTGCCTTATGTAGATGCAAAAACCAATGTTTCTTCG
TGAAAGATATTGTTTGTAAAATTAGAGCCAATACCTTAGTTTTGTACAAAAAGGCGTCAGTGATACTAGAGCACATGGTGTAACACATTTGTAGCAGATTTGTAATTATTGGTCTAAATGTTCTTATAGTTTATTATCTTTGATAAGTATACATGTTTCTCTTTAGGGTTGATTCCATTTAGATCGAGATTTTGGGTTGT
AGCTGTAATGAGTTCTCCTTTTCAAGCTTTAGTTAATCACTTCCATATATCTAGAGATATGTTAGTGATATTTTCCCAATATTATTCTTTTGTGTGTCACACTTCATCATGGGTTGGATGGGATACATAACATATGTGTGTGTCTCTGTACTGAATTTGTTTTGCTTGCGAGCTTAATCTTTTTATCTTTGGATTGGATT
GTGATTTGTCAGCCTATGGATCCTGATCCTAGAAATGAGAAGGATCTGCTACAAAAACGTATCCCCTATCCAAAAGCAGAAAGATGACACAGATCCCAACAAACACTTTTTGTTGTTGAAGAAATACGTTAACCTGGAACCACAGAAGAATAAACTGTTTAAGGCCTGAAATTGGCATGTGCCCAACGTCCATATCACCT
TTTCTTAACCAAACCCGGTCGTCACCTGCCTGTTTGTAGTGGCGACTAAAGCCATCTTGCTGTCAACCTCCAGGAATAAAAACACTGTACTTGCTGCACAAGTTATTGTGTATATCATGCCCAGTAAGGCGTCAATGACATTGTTCACTATTAACATGTTACTCTATTTTAAGACTTGCCCAGATACTTCTGGCAGCATT
GACACCACCACTTCTCCAGGGTTCATTCACGCTTAGTATCTGCAAACTTTGGTGTGGCTCTCACAACCTTTTGATGGCATTCATGTGATATTTAAACAGGTGCGCTAACCTTTAATAGAGGCTTCAGTATGCTTTCTTCTAATTTCCAACAGTTTGATTAATCTACC




Intron 2 GTGAAAAGTT ... ATGGATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A129.2401914
A224.2121.995
A340.144426.232.8
A446.122215.821.8
A536.67201013.2
A628.07256.495105.2
A729.17230.795.294.8
A829.36262.1102115.8
A929.44251.591.3118.5
A1026.57159.46946.3



>TRINITY_DN117531_c0_g2_i1 from sample A1 / Example spliced isoform
AGCAAATCCAAGAGAGATCCTCCTCCATTTAAACTCAAAGCAAATCCATTAGCAAGTGTAAGTGTAGATTGCTGCTTTGGAAACCCTAAAGCATAGAGAGATGGCGAGCGCCATGAGAGCAGGCAGTATAACCATTCTCTCACACACCTGGCGCAACATTCCTCTTTCCACCCCTTCACACTGCAGCAGGAAGTTAAACT
CTGAGGGCAGCAGCGGAGGCGTTAGACATCCGAGTGGGACGCATTCTGAAGGCGTGGAAACACCCAGAGGCGGATTCGTTATACGTCGAAGAAGTCGACGTGGGCGAGCCGGAATCCCGCACAATATGCAGCGGCCTTGTCAATTACATTGCACAAGACGAGCTGCAGATGCATCTCATGAAAGTGTAGAGCTTCTTACA
CCTCCTCAAGGTTCTTGCCCTGGTGAGAGGATTTGGTTTGGTTTGGAAGAAGAATCAAATGGTCAGTCTGATGCTGCATCGCCTAATCAGGTCCAAAAGAAAAAGTTATGGGAAACTGTGCAGCCTCACCTTAAGACATCCAATAATTGTGTGGCTATGTTTGGAGAAAGTCCAATGCGAACATCTTCTGGCTTGGTTTC
TTGCAGATCCCTGAAGAATGCTAACATTTCTTAATCAGGAACCAATGGTGTCCGCTGATGTAACATTTTTTCTCTGCAAGACGAGCATTGGATTTGTTTGTGGAGATTTTCAGTTGCCTTTTCTCTTCCTCTATACCTATATCCTGTGCTGGGTAGTCCAATTATATTGTTCCATTCTTCATCAGTGGTCTGTATTGTAG
CTCTGCTTGTCTACCGGCTAATTAATCGAGAGGATTGAATGCTTCAATGTCAGCTACTGTCATCTCAAGGAACTATTTAGTTCCTACACTGGGTAATGAGATTGAAAATGAAATATTGAGTTGCCTACTGAAATTTATATGATCTGCAAATCATTTCGAGCTATATTTGTATCTTGAGAAAAAGACGGAAAATGAGGTAA
GCCTACTGAAATTTCTATGATCTGCAAATCATGAACATACATTTCGAGCTATACTAGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGAGGTCTTTTGGAGGGACCTTACAAACCGATTTATTGCTGTCAAAAGATCGTGTCTTCGACATATATTGAAATCTTAATCACATTGAACGATGCATAGAATAAGTACTTGAA
CTGCAAGTAACCTTCTGTTATGTGTTTCAATGTGTTTACAAGTTTCAAATTCTTGGAAGTTATTGAGACTTAACGGAACGGCCCATCATTCAAAAATATTAACACGCAAAAATTCAAACAGATTAACGGCGAACACCCTTTCTCAAGACAAATGTTTTCAACACGTCAAAATTCAAACAGATCAACAGCGAACAACCTTC
TTAAAACAAATGTTTTCAATCCGTCAAAATACCTGTAATGAAAACATTTTGAACCAATTTTCTTTCTGCA


>TRINITY_DN117531_c0_g2_i2 from sample A1 / Example unspliced isoform:
ATGCATCTCATGAAAGTGTAGAGCTTCTTACACCTCCTCAAGGTTCTTGCCCTGGTGAGAGGATTTGGTTTGGTTTGGAAGAAGAATCAAATGGTCAGTCTGATGCTGCATCGCCTAATCAGGTCCAAAAGAAAAAGTTATGGGAAACTGTGCAGCCTCACCTTAAGACATCCAATAATTGTGTGGCTATGTTTGGAGAA
AGTCCAATGCGAACATCTTCTGGCTTGGTTTCTTGCAGATCCCTGAAGAATGCTAACATTTCTTAATCAGgtgaaaagttaaagatggaagtttaatgtacgttgacaattaggtagttaaactgagaatccgttgaaatggatgcagGAACCAATGGTGTCCGCTGATGTAACATTTTTTCTCTGCAAGACGAGCATTG
GATTTGTTTGTGGAGATTTTCAGTTGCCTTTTCTCTTCCTCTATACCTATATCCTGTGCTGGGTAGTCCAATTATATTGTTCCATTCTTCATCAGTGGTCTGTATTGTAGCTCTGCTTGTCTACCGGCTAATTAATCGAGAGGATTGAATGCTTCAATGTCAGCTACTGTCATCTCAAGGAACTATTTAGTTCCTACACT
GGGTAATGAGATTGAAAATGAAATATTGAGTTGCCTACTGAAATTTATATGATCTGCAAATCATTTCGAGCTATATTTGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGCCTACTGAAATTTCTATGATCTGCAAATCATGAACATACATTTCGAGCTATACTAGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGA
GGTCTTTTGGAGGGACCTTACAAACCGATTTATTGCTGTCAAAAGATCGTGTCTTCGACATATATTGAAATCTTAATCACATTGAACGATGCATAGAATAAGTACTTGAACTGCAAGTAACCTTCTGTTATGTGTTTCAATGTGTTTACAAGTTTCAAATTCTTGGAAGTTATTGAGACTTAACGGAACGGCCCATCATT
CAAAAATATTAACACGCAAAAATTCAAACAGATTAACGGCGAACACCCTTTCTCAAGACAAATGTTTTCAACACGTCAAAATTCAAACAGATCAACAGCGAACAACCTTCTTAAAACAAATGTTTTCAATCCGTCAAAATACCTGTAATGAAAACATTTTGAACCAATTTTCTTTCTGCA




Intron 3 GTTGCGGGTC ... GGTACTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A162.69254044
A272.28143340
A356.38415650
A458.7191836
A546.67242220
A654.7106129127
A761.17106143191
A859.317180127
A964.8383174132
A1059.92103179129



>TRINITY_DN104205_c8_g3_i7 from sample A4 / Example spliced isoform
ATCCAAGAGAGATCCTCCTCCATTTAAACTCAAAGCAAATCCATTAGCAAGTGTAAGTGTAGATTGCTGCTTTGGAAACCCTAAAGCATAGAGAGATGGCGAGCGCCATGAGAGCAGGCAGTATAACCATTCTCTCACACACCTGGCGCAACATTCCTCTTTCCACCCCTTCACACTGCAGCAGGAAAAACTCTGAGGGC
AGCAGCGGAGGCGTTAGACATCCGAGTGGGACGCATTCTGAAGGCGTGGAAACACCCAGAGGCGGATTCGTTATACGTCGAAGAAGTCGACGTGGGCGAGCCGGAATCCCGCACAATATGCAGCGGCCTTGTCAATTACATTGCACAAGACGAGCTGCAGGGCAGGAATGTGGTCGTCCTTGCCAATCTTAAGCCACGAA
ATATGCGGGGTGTCAAATCTAATGGAATGCTTCTGGCTGCCTCAGATGCATCTCATGAAAATGTAGAGCTTCTTACACCTCCTCAAGGTTCTTGTCCTGGGGAGAGGATTTGGTTTGGTTTGGAAGAAGAATCAAATGGTCAGTCTGATGCTGCATCGCCTAATCAGGTCCAAAAGAAAAAGTTATGGGAAACTGTGCAG
CCTCACCTTAAGACATCCAATAATTGTGTGGCTATGTTTGGAGAAAGTCCAATGCGAACATCTTCTGGCTTGGTTTCTTGCAGATCCCTGAAGAATGCTAACATTTCTTAATCAGGAACCAATGGTGTCCGCTGATGTAACATTTTTTCTCTGCAAGACGAGCATTGGATTTGTTTGTGGAGATTTTCAGTTGCCTTTTC
TCTTCCTCTATACCTATATCCTGTGCTGGGTAGTCCAATTATATTGTTCCATTCTTCATCAGTGGTCTGTATTGTAGCTCTGCTTGTCTACCGGCTAATTAATCGAGAGGATTGAATGCTTCAATGTCAGCTACTGTCATCTCAAGGAACTATTTAGTTCCTACACTGGGTAATGAGATTGAAAATGAAATATTGAGTTG
CCTACTGAAATTTATATGATCTGCAAATCATTTCGAGCTATATTTGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGCCTACTGAAATTTCTATGATCTGCAAATCATGAACATACATTTCGAGCTATACTAGTATCTTGAGAAAAAGACGGAAATTGAGG


>TRINITY_DN104205_c8_g3_i1 from sample A4 / Example unspliced isoform:
ATCCAAGAGAGATCCTCCTCCATTTAAACTCAAAGCAAATCCATTAGCAAGTGTAAGTGTAGATTGCTGCTTTGGAAACCCTAAAGCATAGAGAGATGGCGAGCGCCATGAGAGCAGGCAGTATAACCATTCTCTCACACACCTGGCGCAACATTCCTCTTTCCACCCCTTCACACTGCAGCAGGAAgttgcgggtctcc
attcctttctctttttcttcgtttcctcatttcaaaaccctatgttgctcggcttcttctccttctctaaatgcacaagagaacattactaattcttctgcttgtataccgcccttggccgaagagggtactgcag
AAACTCTGAGGGCAGCAGCGGAGGCGTTAGACATCCGAGTGGGACGCATTCTGAAGGCGTGGAA
ACACCCAGAGGCGGATTCGTTATACGTCGAAGAAGTCGACGTGGGCGAGCCGGAATCCCGCACAATATGCAGCGGCCTTGTCAATTACATTGCACAAGACGAGCTGCAGGGCAGGAATGTGGTCGTCCTTGCCAATCTTAAGCCACGAAATATGCGGGGTGTCAAATCTAATGGAATGCTTCTGGCTGCCTCAGATGCAT
CTCATGAAAATGTAGAGCTTCTTACACCTCCTCAAGGTTCTTGCCCTGGTGAGAGGATTTGGTTTGGTTTGGAAGAAGAATCAAATGGTCAGTCTGATGCTGCATCGCCTAATCAGGTCCAAAAGAAAAAGTTATGGGAAACTGTGCAGCCTCACCTTAAGACATCCAATAATTGTGTGGCTATGTTTGGAGAAAGTCCA
ATGCGAACATCTTCTGGCTTGGTTTCTTGCAGATCCCTGAAGAATGCTAACATTTCTTAATCAGGTGAAAAGTTAAAGATGGAAGTTTAATGTACGTTGACAATTAGGTAGTTAAACTGAGAATCCGTTGAAATGGATGCAGGAACCAATGGTGTCCGCTGATGTAACATTTTTTCTCTGCAAGACGAGCATTGGATTTG
TTTGTGGAGATTTTCAGTTGCCTTTTCTCTTCCTCTATACCTATATCCTGTGCTGGGTAGTCCAATTATATTGTTCCATTCTTCATCAGTGGTCTGTATTGTAGCTCTGCTTGTCTACCGGCTAATTAATCGAGAGGATTGAATGCTTCAATGTCAGCTACTGTCATCTCAAGGAACTATTTAGTTCCTACACTGGGTAA
TGAGATTGAAAATGAAATATTGAGTTGCCTACTGAAATTTATATGATCTGCAAATCATTTCGAGCTATATTTGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGCCTACTGAAATTTCTATGATCTGCAAATCATGAACATACATTTCGAGCTATACTAGTATCTTGAGAAAAAGACGGAAATTGAGG




Intron 4 GCGGGTCTCC ... GGTACTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A163.91244144
A272.28143340
A357.07415950
A457.45201836
A546.67242220
A654.84105128127
A761.01108147191
A859.327283127
A965.3382177132
A1060.24101177129



>TRINITY_DN117531_c0_g2_i1 from sample A1 / Example spliced isoform
AGCAAATCCAAGAGAGATCCTCCTCCATTTAAACTCAAAGCAAATCCATTAGCAAGTGTAAGTGTAGATTGCTGCTTTGGAAACCCTAAAGCATAGAGAGATGGCGAGCGCCATGAGAGCAGGCAGTATAACCATTCTCTCACACACCTGGCGCAACATTCCTCTTTCCACCCCTTCACACTGCAGCAGGAAGTTAAACT
C
TGAGGGCAGCAGCGGAGGCGTTAGACATCCGAGTGGGACGCATTCTGAAGGCGTGGAAACACCCAGAGGCGGATTCGTTATACGTCGAAGAAGTCGACGTGGGCGAGCCGGAATCCCGCACAATATGCAGCGGCCTTGTCAATTACATTGCACAAGACGAGCTGCAGATGCATCTCATGAAAGTGTAGAGCTTCTTACA
CCTCCTCAAGGTTCTTGCCCTGGTGAGAGGATTTGGTTTGGTTTGGAAGAAGAATCAAATGGTCAGTCTGATGCTGCATCGCCTAATCAGGTCCAAAAGAAAAAGTTATGGGAAACTGTGCAGCCTCACCTTAAGACATCCAATAATTGTGTGGCTATGTTTGGAGAAAGTCCAATGCGAACATCTTCTGGCTTGGTTTC
TTGCAGATCCCTGAAGAATGCTAACATTTCTTAATCAGGAACCAATGGTGTCCGCTGATGTAACATTTTTTCTCTGCAAGACGAGCATTGGATTTGTTTGTGGAGATTTTCAGTTGCCTTTTCTCTTCCTCTATACCTATATCCTGTGCTGGGTAGTCCAATTATATTGTTCCATTCTTCATCAGTGGTCTGTATTGTAG
CTCTGCTTGTCTACCGGCTAATTAATCGAGAGGATTGAATGCTTCAATGTCAGCTACTGTCATCTCAAGGAACTATTTAGTTCCTACACTGGGTAATGAGATTGAAAATGAAATATTGAGTTGCCTACTGAAATTTATATGATCTGCAAATCATTTCGAGCTATATTTGTATCTTGAGAAAAAGACGGAAAATGAGGTAA
GCCTACTGAAATTTCTATGATCTGCAAATCATGAACATACATTTCGAGCTATACTAGTATCTTGAGAAAAAGACGGAAAATGAGGTAAGAGGTCTTTTGGAGGGACCTTACAAACCGATTTATTGCTGTCAAAAGATCGTGTCTTCGACATATATTGAAATCTTAATCACATTGAACGATGCATAGAATAAGTACTTGAA
CTGCAAGTAACCTTCTGTTATGTGTTTCAATGTGTTTACAAGTTTCAAATTCTTGGAAGTTATTGAGACTTAACGGAACGGCCCATCATTCAAAAATATTAACACGCAAAAATTCAAACAGATTAACGGCGAACACCCTTTCTCAAGACAAATGTTTTCAACACGTCAAAATTCAAACAGATCAACAGCGAACAACCTTC
TTAAAACAAATGTTTTCAATCCGTCAAAATACCTGTAATGAAAACATTTTGAACCAATTTTCTTTCTGCA


>TRINITY_DN117531_c0_g2_i7 from sample A1 / Example unspliced isoform:
AGCAAATCCAAGAGAGATCCTCCTCCATTTAAACTCAAAGCAAATCCATTAGCAAGTGTAAGTGTAGATTGCTGCTTTGGAAACCCTAAAGCATAGAGAGATGGCGAGCGCCATGAGAGCAGGCAGTATAACCATTCTCTCACACACCTGGCGCAACATTCCTCTTTCCACCCCTTCACACTGCAGCAGGAAGTTgcggg
tctccattcctttctctttttcttcgtttcctcatttcaaaaccctatgttgctcggcttcttctccttctctaaatgcacaagagaacattactaattcttctgcttgtataccgcccttggccgaagagggtactgcag
AAACTCTGAGGGCAGCAGCGGAGGCGTTAGACATCCGAGTGGGACGCATTCTGAAGGCG
TGGAAACACCCAGAGGCGGATTCGTTATACGTCGAAGAAGTCGACGTGGGCGAGCCGGAATCCCGCACAATATGCAGCGGCCTTGTCAATTACATTGCACAAGACGAGCTGCAGGTAAATTAATTTATGGCTTTTGTTTTTGGTTCTTAAACCCTTCTTTTAAATTTAAGTTATATATTTTTTTCGTTCGTTAAACCCTC
AACGAAAATGGGATTTTGTTAAGGAAGTAGGCATGTCTTTAATTTTGTTTTTTGGTTCAACCTTCTCTTAGAATGGGCTTTATATTCAGCTTAGATGTTAGATGTAGTGACCAAATTCACCTTCTATTATAGGTTGAGATATGGGCCATCAAGGGCTTTTCCCAAATCTCTGGTGGGGCAGTTAATTCAGTAGGCAACTC
ATTGACATGTCTGGGGGGGTTTGAACCGGCGTCTGAGTGCTGATGGCGCTTTAATATAACCACTTTGCCAC