NA ----> NA

Intron 1 GTCAATCTTC ... GGTAGTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	56.94	45	58	61
A2	55.67	45	54	59
A3	59.09	54	78	78
A4	61.62	38	58	64
A5	51.28	19	18	22
A6	60.08	95	146	140
A7	58.06	173	227	252
A8	63.14	94	157	165
A9	57.63	175	230	246
A10	58.78	128	169	196

>TRINITY_DN108410_c0_g1_i12 from sample A4 / Example spliced isoform

GTCAGTCCACCATCGTCAGTTTCAACAATCCCAGAAGGGCAGGGCACCTCAAGCGCCGGATCGCAATGGCGGACGGCAATTCAGCACAAACACAAAGAGAGAATCACATTAACAAACAAGCATGGACAGAAGCTGGTGGGAGTATTAGATGATACTGGCTCAAGAGAACTTGTGGTCCTTTGCCATGGATTTCGATCATC
AAAGGAAAGTGGCACTTTGGTTAATCTGGCAGCTGCATTAGTAAGTGAAGGAATTAGTGCCTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGAAGGCCAGTTTCTATATGGAAACTACTGGGGGGAGGCTGAAGATCTGCATACTGTAATTCTGTATTTTGCTGGAAAGGAGCGTAAAGTGAACACTATCATTGGGC
ACAGTAAGGGAGGCAATATCGTGTTACTCTATGCTTCTAAGTATCATGATATTAGCACTGTTATTAATATTAGTGGACGATATGCATTGGACAAAGGCATAGAGGATCGCCTGGGTAAAGATTTTGAACGTAGGATCAATGAAGATGGATTTATTGATGTTAAGAATATATCTGGAAATGTTGAGTACCGTGTCACAAAA
GAGAGTTTGATGGATCGACTTGAAACAGATATGAAATCGGCAGCACTTTCTATTCCTAAAAATTGCAGGGTGTTGACTATTCATGGCAGTAAGGATGAG

>TRINITY_DN108410_c0_g1_i5 from sample A4 / Example unspliced isoform:

GTTGGTGATAATCATGGATAGGCCATAACCCGCGATAAATATTAAACAGTGTTACTTCAACATGAATAGGCCATAACGCGCGATAAATATTAAACATGGTTACTTCAACATTGACTCTTCAGGGCGTTGCACTCCCAGTTGAAACCCATAACAGATTCCAGACACGCAAATCTGTTGAGTCCATCATCCTGGGCGTTGCA
CTCCCAGTTGAAACCCATCACAGATTTCAGACACTCAAATCTTGTCAGTCCACCATCGTCAGTTTCAACAATCCCAGAAGGGCAGGGCACCTCAAGCGCCGGATCGCAATGGCGGACGGCAATTCAGCACAAACACAAAgtcaatcttcactggtagtgcagGAGAGAATCACATTAACAAACAAGCATGGACAGAAGCT
GGTGGGAGTATTAGATGATACTGGCTCAAGAGAACTTGTGGTCCTTTGCCATGGATTTCGATCATCAAAGGAAAGTGGCACTTTGGTTAATCTGGCAGCTGCATTAGTAAGTGAAGGAATTAGTGCCTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGAAGGCCAGTTTCTATATGGAAACTACTGGGGGGAGGCTG
AAGATCTGCATACTGTAATTCTGTATTTTGCTGGAAAGGAGCGTAAAGTGAACACTATCATTGGGCACAGTAAGGGAGGCAATATCGTGTTACTCTATGCTTCTAAGTATCATGATATTAGCACTGTTATTAATATTAGTGGACGATATGCATTGGACAAAGGCATAGAGGATCGCCTGGGTAAAGATTTTGAACGTAGG
ATCAATGAAGATGGATTTATTGATGTTAAGAATATATCTGGAAATGTTGAGTACCGTGTCACAAAAGAGAGTTTGATGGATCGACTTGAAACAGATATGAAATCGGCAGCACTTTCTATTCCTAAAAATTGCAGGGTGTTGACTATTCATGGCAGTAAGGATGAGGTCATTCCTGTTACGGATGCCTTTGAATTTGATAA
GCTTATAACCAATCATGTTCTTCATGTTATGGATGGAGCCGATCATTGTTACAATTTCCATCAAAATGAATTGGCATCTGTTGTTCTAAGCTTCATAAAGTCTAGTTGAGAGATGCGTAAAGACAAAACATATCATGTGGCGTCTTGTTCAAGAATAATGGGTGTCTTTGTTTCCGAAAGTTAATTTCTTCTTTTGATAT
GATGAACATGTTTCATTTAATTTCTAGAAGCATTATTGATTATATTATCTAAGCTAGGTTATTATTGTCATCTATCTTATCGGTGATATGCAAAAACACATCATGTAGCTTTTTTTTTGTTATTTGCAACGACATAAATCACGGTTGGAAATAACTCCCATTTTATCTCGCTTTCTTATGCATATATATTTTGGATTCTT
AATTACAGTAATGCGCCATTAATATAATCTGCTTTGAATGGAGCTAATCACGCCTGAAACCATCAAAGATTGTTTGATAACAGGTAATGTACAATTCACATGACCTGCTTTAAACG

Intron 2 GTACTTATTC ... ATCATCAAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	76.09	22	0	70
A2	76.47	16	0	52
A3	74.39	21	4	61
A4	70.77	19	1	46
A5	84.09	7	0	37
A6	73.42	59	0	163
A7	81.04	69	0	295
A8	77.3	64	0	218
A9	78.99	79	2	297
A10	81.76	54	2	242

>TRINITY_DN108410_c0_g1_i9 from sample A4 / Example spliced isoform

GTTGCACTCCCAGTTGAAACCCAGAACAGATTTCAGACACGCAAATCTAGTGAGTCCATCATCCTGGGCGTTGCACTCCCAGTTGAAACCCATCACAGATTTCAGACACTCAAATCTAGTCAGTCCACCATCGTCAGTTTCAACAATCCCAGAAGGGCAGGGCAGCTCGAGCACCGGATCGCAATGGCGGACGGCAATTC
AGCACAAACACAAAGTCAATCTTCACGAAAGTGGCACTTTGGTTAATCTGGCAGCTGCATTAGTAAGTGAAGGAATTAGTGCCTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGAAGGCCAGTTTCTATATGGAAACTACTGG

>TRINITY_DN108410_c0_g1_i8 from sample A4 / Example unspliced isoform:

CCAAGCACCGGATCGCAATGGCGGACGGCAATTCAGCACAAACACAAAGTCAATCTTCACgtacttattctgcttactttggtcagggtattttaaactagcggtactccagtatactaggactttaaaacagaatttgaatgtattttagggatttgacaatattttatcaattggggacctggtgcgagagtaggagc
gactactattattcgtgagatcagtttgaataatgtgtttgcaaagagaataatggtagtgcaggagagaatcacattaacaaacaagcatgggcagaagctggtgggagtattagatgatactggctcaagagaacttgtggtcctttgccatggatttcgatcatcaaagGAAAGTGGCACTTTGGTTAATCTGGCAG
CTGCATTAGTAAGTGAAGGAATTAGTGCCTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGAAGGCCAGTTTCTATATGGAAACTACTGGGGGGAGGCTGAAGATCTGGATACTGTAATTCTGTATTTCGCTGGAAAGCAGCGTAAAGTGAACACTATCATTGGGCACAGTAAGGGAAATGTTGAGTACCGTGTCACA
AAAGAGAGTTTGATGGATCGACTTGAAACAGATATGAAATCGGCAGCACTTTCTATTCCTAAAAATTGCAGGGTGTTGACTATTCATGGCAGTAAGGATGAG