sp|Q0WPT7|Y2104_ARATH ----> Uncharacterized methyltransferase At2g41040, chloroplastic
Intron 1 GTAAACATCA ... ATGTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.23 | 4 | 7 | 11 |
| A2 | 56.76 | 8 | 9 | 12 |
| A3 | 73.71 | 5.2 | 13 | 16 |
| A4 | 83.33 | 1 | 3 | 7 |
| A5 | 66.67 | 1 | 1 | 3 |
| A6 | 73.27 | 22.8 | 54 | 71 |
| A7 | 75.71 | 14.6 | 32 | 59 |
| A8 | 72.61 | 23.2 | 48 | 75 |
| A9 | 70.94 | 25 | 52 | 70 |
| A10 | 74.67 | 11.2 | 33 | 33 |
>TRINITY_DN122252_c2_g3_i1 from sample A2 / Example spliced isoformCCTTTGATCAGAAAAGGTCCCTCAGGTCTAAACATGTCATCTGTATCAAGGTCTGGGTTTCAATGTGAAAACTGTAAGAAAGCATACTCCACTAGAGATGTTTATATAGACCTCACTGTGACGGCTGGTTCAAATGAATATGATGAGAACAGGCCAATCGCTACAGAACTATTCAGGAGTCCACTGGTTTCATTTGTTTA
TGAGAGAGGCTGGCGGCAAAACTTTGCAACGAGTGGCTTTCCAGGTCCCGATGAGGAGTTCAGAATGGCACAAAGTTTTTTGGAGCCTGCTGCAGGGGGTTTACTGGTGGATGCCAGCTGTGGAAGTGGATTATTTTCCCGACGCTTTGCCAAGTGTGGGCTTTATTCAGGTGTAGTGGCTCTCGACTTCTCGGAAAACA
TGTTGCGCCAGTGCTATGAGTTCATCAAACAGGATAAATCTCTATCTACAGTGAACCTAGCTCTGGTTAGAGCAGATATTTCAAGGCTTCCTTTTGCAACAGGCTCTGTTGATGCTGTACATGCGGGTGCTGCATTGCACTGTTGGCCATCCCCATCCGCTGCTGTAGCAGAAATCAGTCGTGTTCTGAGACCTGGTGGT
GTGTTTGTGGCAACAACCTTTGTTTTATCTGGGATCCTAGATTCAGATATCGTGAAGCCGTTACGCCAGGCAATCAAAGCAACAAACACCGTTGCTTATTTGACGGAAAGAGAGTTGAAAGATCTCTGCAAGACATGTGGCCTTGTTGACTATTCGTGCATAAGGAGACGGGCATTTGTAATGATATCTGCCCGCAAGCC
AGAGTAATATGGCAGATCTGCCTTAATACCATCAGCCAGATTTAAATCGTCGATTTGTGTCAGCTTTTAAATCTCTTCCAGCTTCTTGGGTTTCACAAATGACCAGATTTTGGAGGTGTTTTTTTATTCCGTGGAGATTTAAAAACCTCTGGGTATTATGAGTAGCTGATAAACTTGCGTTTGGAAAATGTACCAATGTT
TGTTATTGGCAAGGTTTGGTTCTTCACTGAGGAATCAAAACAGCTAGGTCAATGTATTATTTATCATAAAGAATATAGATTTTTATCCATACCTTTTCTCTGATCGAGAGGGCATGTAAACGACACTGTAAATGTAGATGATTATTGGGTCGATAGACCCTTTTTACAGCCCAAAGTGGATGAGATGTGTCACGTCTGTC
ACATGTCGGCTTGGAATTTAAATTGGC
>TRINITY_DN122252_c2_g3_i7 from sample A2 / Example unspliced isoform:CCTTTGATCAGAAAAGGTCCCTCAGGTCTAAACATGTCATCTGTATCAAGGTCTGGGTTTCAATGTGAAAACTGTAAGAAAGCATACTCCACTAGAGATGTTTATATAGACCTCACTGTGACGGCTGGTTCAAATGAATATGATGAGAACAGGCCAATCGCTACAGAACTATTCAGGAGTCCACTGGTTTCATTTGTTTA
TGAGAGAGGCTGGCGGCAAAACTTTGCAACGAGTGGCTTTCCAGGTCCCGATGAGGAGTTCAGAATGGCACAAAGTTTTTTGGAGCCTGCTGCAGGGGGTTTACTGGTGGATGCCAGCTGTGGAAGTGGATTATTTTCCCGACGCTTTGCCAAGTGTGGGCTTTATTCAGGTGTAGTGGCTCTCGACTTCTCGGAAAACA
TGTTGCGCCAGTGCTATGAGTTCATCAAACAGGATAAATCTCTATCTACAGTGAACCTAGCTCTGGTTAGAGCAGATATTTCAAGGCTTCCTTTTGCAACAGGCTCTGTTGATGCTGTACATGCGGGTGCTGCATTGCACTGTTGGCCATCCCCATCCGCTGCTGTAGCAGAAATCAGTCGTGTTCTGAGACCTGGTGGT
GTGTTTGTGGCAACAACCTTTGTTTTATCTGGGATCCTAGATTCAGATATCGTGAAGCCGTTACGCCAGGCAATCAAAGCAACAAACACCGTTGCTTATTTGACGGAAAGAGAGTTGAAAGATCTCTGCAAGACATGTGGCCTTGTTGACTATTCGTGCATAAGGAGACGGGCATTTGTAATGATATCTGCCCGCAAGCC
AGAGTAATATGGCAGATCTGCCTTAATACCATCAGCCAGATTTAAATCGTCGATTTGTGTCAGCTTTTAAATCTCTTCCAGCTTCTTGGGTTTCACAAATGACCAGgtaaacatcaaattctaattcaaaggcctggcccatggtggtttccaagcgaagggaatttctgtttctctagtggtaatcatcatatttagac
tttattgctaatttgttatgtctacagATTTTGGAGGTGTTTTTTTATTCCGTGGAGATTTAAAAACCTCTGGGTATTATGAGTAGCTGATAAACTTGCGTTTGGAAAATGTACCAATGTTTGTTATTGGCAAGGTTTGGTTCTTCACTGAGGAATCAAAACAGCTAGGTCAATGTATTATTTATCATAAAGAATATAGA
TTTTTATCCATACCTTTTCTCTGATCGAGAGGGCATGTAAACGACACTGTAAATGTAGATGATTATTGGGTCGATAGACCCTTTTTACAGCCCAAAGTGGATGAGATGTGTCACGTCTGTCACATGTCGGCTTGGAATTTAAATTGGC
Intron 2 GTAGCAGAAA ... GTTACGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.55 | 5.5 | 13 | 14 |
| A2 | 88.78 | 3 | 30 | 15 |
| A3 | 66.2 | 6.5 | 11 | 14 |
| A4 | 92.91 | 1.5 | 19 | 20 |
| A5 | 90.48 | 1 | 11 | 6 |
| A6 | 81.46 | 10.5 | 37 | 52 |
| A7 | 77.03 | 17.5 | 53 | 56 |
| A8 | 78.08 | 15 | 38 | 65 |
| A9 | 79.78 | 12.5 | 39 | 57 |
| A10 | 77.38 | 19 | 56 | 71 |
>TRINITY_DN116340_c11_g1_i4 from sample A1 / Example spliced isoformAACAATCCAAGCTGGTGGCCATGAATCATTCTGTCGGCTGGCTCATTCGAAGCCCCTTCGTTATATTTTATTCTTTGAATGATAAATGCCAACCATCTTCACAAATACTAACACTGCAGGTTGTGTACCAATGAAACCCGTACCAACGACAAAAGATGGATATTCTCTCTAAATTTCCGAGGCCTGCTACGTACCCGGGG
TCTGGCATACTCACCGATCCCTGCCAGAGATCAGGGTTTCTATTCTCGCCAAGGAAATTCGACATTGGGATTTTTAGAAAATCTTCGTTCGGAGCAGTTAAATCGCGTAATCTATTCGTTGGGATCCGAGCAGCTGCTACAGTCGAAGCGCCGGATTTGAAGATAGATAGCAATGTGGACACAACTGTAGACGTTCTCTC
ATGCCCCATTTGTTATAAGCCTTTGATCAGAAAAGGTCCCTCAGGTCTAAACATGTCATCTGTATCAAGGTCTGGGTTTCAATGTGAAAACTGTAAGAAAGCATACTCCACTAGAGATGTTTATATAGACCTCACTGTGACGGCTGGTTCAAATGAATATGATGAGAACAGGCCAATCGCTACAGAACTATTCAGGAGTC
CACTGGTTTCATTTGTTTATGAGAGAGGCTGGCGGCAAAACTTTGCAACGAGTGGCTTTCCAGGTCCCAATGAGGAGTTCAGAATGGCACAAAGTTTTTTGGAGCCTGCTGCAGGGGGTTTACTGGTGGATGCCAGCTGTGGAAGTGGATTATTTTCCCGACGCTTTGCCAAGTGTGGGCTTTATTCAGGTGTAGTGGCT
CTCGACTTCTCGGAAAACATGTTGCGCCAGTGCTATGAGTTCATCAAACAGGATAAATCTCTATCTACAGTGAACCTAGCTCTGGTTAGAGCAGATATTTCAAGGCTTCCTTTTGCAACAGGCTCTGTTGATGCTGTACATGCGGGTGCTGCATTGCACTGTTGGCCATCCCCATCCGCTGCTGCAATCAAAGCAACAAA
CACCGTTGCTTATTTGACGGAAAGAGAGTTGAAAGATCTCTGCAAGACATGTGGCCTTGTTGACTATTCGTGCATAAGGAGACGGGCATTTGTAATGATATCTGCCCGCAAGCCAGAGTAATATGGCAGATCTGCCTTAATACCATCAGCCAGATTTAAATCGTCGATATGTGTCAGCTTTTAAATCTCTTCCAGCTTCT
TGGGTTTCACAAATGACCAGGTAAACATCAAATTCTAATTCAAAGGCCTGGCACATGGTGGTTTCCAAGCGAAGGGAATTTCTGTTTCTCTAGTGGTAATCATCATATTTAGACTTTATTGCTAATTTGTTATGTCTACAGATTTTGGAGGTGTTTTTTTATTCCGTGGAGATTTAAAAACCTCTGGGTATTATGAGTAG
CTGATAAACTTGCGTTTGGAAAATGTACCAATGTTTGTTATTGGCAAGGTTTGGTTCTTCACTGAGGAATCAAAACAGCTAGGTCAATGTATTATTTATCATAAAGAATATAGATTTTGATCCATACCTTTTCTCTGATCGAGAGGGCATGTAAACGACACTGTAAATGTAGATGATTATTGGGTCGATAGACCCTTTTT
ACAGCCCAAAGTGGATGAGATGTGTCACGTCTGTCACATGTCGGCTTGGAATTTAAATTGGCTAG
>TRINITY_DN116340_c11_g1_i1 from sample A1 / Example unspliced isoform:AACAATCCAAGCTGGTGGCCATGAATCATTCTGTCGGCTGGCTCATTCGAAGCCCCTTCGTTATATTTTATTCTTTGAATGATAAATGCCAACCATCTTCACAAATACTAACACTGCAGGTTGTGTACCAATGAAACCCGTACCAACGACAAAAGATGGATATTCTCTCTAAATTTCCGAGGCCTGCTACGTACCCGGGG
TCTGGCATACTCACCGATCCCTGCCAGAGATCAGGGTTTCTATTCTCGCCAAGGAAATTCGACATTGGGATTTTTAGAAAATCTTCGTTCGGAGCAGTTAAATCGCGTAATCTATTCGTTGGGATCCGAGCAGCTGCTACAGTCGAAGCGCCGGATTTGAAGATAGATAGCAATGTGGACACAACTGTAGACGTTCTCTC
ATGCCCCATTTGTTATAAGCCTTTGATCAGAAAAGGTCCCTCAGGTCTAAACATGTCATCTGTATCAAGGTCTGGGTTTCAATGTGAAAACTGTAAGAAAGCATACTCCACTAGAGATGTTTATATAGACCTCACTGTGACGGCTGGTTCAAATGAATATGATGAGAACAGGCCAATCGCTACAGAACTATTCAGGAGTC
CACTGGTTTCATTTGTTTATGAGAGAGGCTGGCGGCAAAACTTTGCAACGAGTGGCTTTCCAGGTCCCAATGAGGAGTTCAGAATGGCACAAAGTTTTTTGGAGCCTGCTGCAGGGGGTTTACTGGTGGATGCCAGCTGTGGAAGTGGATTATTTTCCCGACGCTTTGCCAAGTGTGGGCTTTATTCAGGTGTAGTGGCT
CTCGACTTCTCGGAAAACATGTTGCGCCAGTGCTATGAGTTCATCAAACAGGATAAATCTCTATCTACAGTGAACCTAGCTCTGGTTAGAGCAGATATTTCAAGGCTTCCTTTTGCAACAGGCTCTGTTGATGCTGTACATGCGGGTGCTGCATTGCACTGTTGGCCATCCCCATCCGCTGCTgtagcagaaatcagtcg
tgttctgagacctggtggtgtgtttgtggcaacaacctttgttttatctgggatcctagattcagatatcgtgaagccgttacgccagGCAATCAAAGCAACAAACACCGTTGCTTATTTGACGGAAAGAGAGTTGAAAGATCTCTGCAAGACATGTGGCCTTGTTGACTATTCGTGCATAAGGAGACGGGCATTTGTAA
TGATATCTGCCCGCAAGCCAGAGTAATATGGCAGATCTGCCTTAATACCATCAGCCAGATTTAAATCGTCGATATGTGTCAGCTTTTAAATCTCTTCCAGCTTCTTGGGTTTCACAAATGACCAGGTAAACATCAAATTCTAATTCAAAGGCCTGGCACATGGTGGTTTCCAAGCGAAGGGAATTTCTGTTTCTCTAGTG
GTAATCATCATATTTAGACTTTATTGCTAATTTGTTATGTCTACAGATTTTGGAGGTGTTTTTTTATTCCGTGGAGATTTAAAAACCTCTGGGTATTATGAGTAGCTGATAAACTTGCGTTTGGAAAATGTACCAATGTTTGTTATTGGCAAGGTTTGGTTCTTCACTGAGGAATCAAAACAGCTAGGTCAATGTATTAT
TTATCATAAAGAATATAGATTTTGATCCATACCTTTTCTCTGATCGAGAGGGCATGTAAACGACACTGTAAATGTAGATGATTATTGGGTCGATAGACCCTTTTTACAGCCCAAAGTGGATGAGATGTGTCACGTCTGTCACATGTCGGCTTGGAATTTAAATTGGCTAG