NA ----> NA
Intron 1 GTATGTGTAA ... CCGGCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.44 | 22 | 66 | 115 |
| A2 | 83.05 | 20 | 83 | 113 |
| A3 | 72.22 | 40 | 92 | 116 |
| A4 | 74.47 | 24 | 60 | 80 |
| A5 | 73.21 | 15 | 39 | 43 |
| A6 | 75.51 | 30 | 82 | 103 |
| A7 | 79.36 | 61 | 164 | 305 |
| A8 | 75.71 | 73 | 171 | 284 |
| A9 | 72.16 | 49 | 94 | 160 |
| A10 | 76.64 | 66 | 174 | 259 |
>TRINITY_DN43417_c1_g1_i6 from sample A6 / Example spliced isoformACGGTGGAGAGAATTCGACCGTTCAGAAAAGCTAATCCATCATCTATTTAGTAACTATCATCTGGTTTCAGTAACCTTCTCTTCTTGCAGTGCACTGCACTGCACTCTTTTGACAATCTGTGCTCTTCCTCTCTCTCTCAGGCGAGCCAGTAATGTGTTGTGGAGCGCTCCTCCTTCTGTGTCGTTGCTTTGATCTGTAT
CTGTGGCTCTGTGTTGTGACTGTTCGTCCAGACAGACATACCTTTCTGCCAGGAAGTCTTTGGATGACCAAAAGCAGAGGCGTGGCGATGGCTGCAGGATGTGATGATGATCTCCACCGGCATCAATGGTGATGGAGGAAGGATGCATGCAAGAGCAGCGATCATAAGAGAAAAGTGAGACAGGAAGAGATCAGTTCCTC
GGAAACAGATTAGGCATTCGAATCCAGCGGCGGCAGTGTCACAATACCAAATTTCAGCGATGGCTTCAGGGAGGCTAATATGGAGGCGGACTTTCTTTCTAAGAGGGCACTAAACTCACTGGTCGGGGTCATCATGTGGCAAGAATGGAGGGCTGATATACTTATAACCCAGGATTCTCCCTAGAGGCTGACTCCAACTC
CTTGTTGGACGTTTTTGTCATACATCCTCTTCTGTTTACGGCTCATATGACAGCCACTTTTGGCTGCGGCTCGGTATTATACTTTGTTTGGTCCTTATATGATGCATTTGGTGTTTGATAGATGTGACTGACTGTGTATGTGACCATATTTTTATATGTATATGGACACTTTGATATACTGGTGAATATTGGATCCGTTT
CTCCTACTGGAGGGATTCCTGATGTTATTTTGTGGACATATGGTACTTTCTATTTGGACTTTTTTGATGCTGTTGATGATACATTTGACATGATGTATGGCTTGCCCTTGTGCACCCTCTGACAGGGTTTGTGAGAAGCATGTATATTTCTGACAGCTGGTATTATTTACTATTTCGTATATTAATAGTAAGTTATATTT
>TRINITY_DN43417_c1_g1_i2 from sample A6 / Example unspliced isoform:ACGGTGGAGAGAATTCGACCGTTCAGAAAAGCTAATCCATCATCTATTTAGTAACTATCATCTGGTTTCAGTAACCTTCTCTTCTTGCAGTGCACTGCACTGCACTCTTTTGACAATCTGTGCTCTTCCTCTCTCTCTCAGGCGAGCCAGTAATGTGTTGTGGAGCGCTCCTCCTTCTGTGTCGTTGCTTTGATCTGTAT
CTGTGGCTCTGTGTTGTGACTGTTCGTgtatgtgtaatttttgttgtctttctgtgtttttgtttgtataattcagtctgcatttgttgcctttctttgtttttgtttgggactttcagtttgcatttgttgttaaatgacgagtctgagagagacggccggccacagCCAGACAGACATACCTTTCTGCCAGGAAGTCT
TTGGATGACCAAAAGCAGAGGCGTGGCGATGGCTGCAGGATGTGATGATGATCTCCACCGGCATCAATGGTGATGGAGGAAGGATGCATGCAAGAGCAGCGATCATAAGAGAAAAGTGAGACAGGAAGAGATCAGTTCCTCGGAAACAGATTAGGCATTCGAATCCAGCGGCGGCAGTGTCACAATACCAAATTTCAGCG
ATGGCTTCAGGGAGGCTAATATGGAGGCGGACTTTCTTTCTAAGAGGGCACTAAACTCACTGGTCGGGGTCATCATGTGGCAAGAATGGAGGGCTGATATACTTATAACCCAGGGTTCTTATAATTTACATTGGACATGATGCTTGTTGTTATTGATTTTTGTTATTATATTTTTTGATGCTCCTATATTCGCGGGTTGA
TATACTTATATGTCTTTTAGCTCTATGTGCAGATTCTCCCTAGAGGCTGACTCCAACTCCTTGTTGGACGTTTTTGTCATACATCCTCTTCTGTTTACGGCTCATATGACAGCCACTTTTGGCTGCGGCTCGATTTGGAGTGGGACTAGTGGAGAACTTGAGTAGGAGAGACTTAGAGTTTCAGTTTCGACGAGGTGCCT
AGCAGAACATGGTATGATTTGTACTTTTGCC
Intron 2 GTTCTTATAA ... CTATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.09 | 22 | 55 | 85 |
| A2 | 83.56 | 6 | 37 | 24 |
| A3 | 77.47 | 18 | 58 | 65.8 |
| A4 | 70.51 | 11 | 15 | 37.6 |
| A5 | 80.09 | 4 | 14.2 | 18 |
| A6 | 67.94 | 40 | 77.2 | 92.4 |
| A7 | 74.06 | 107 | 272.4 | 338.4 |
| A8 | 68.94 | 160.4 | 320.6 | 391.4 |
| A9 | 71.68 | 83 | 176.8 | 243.4 |
| A10 | 67.7 | 105 | 203 | 237.2 |
>TRINITY_DN43417_c1_g1_i6 from sample A6 / Example spliced isoformACGGTGGAGAGAATTCGACCGTTCAGAAAAGCTAATCCATCATCTATTTAGTAACTATCATCTGGTTTCAGTAACCTTCTCTTCTTGCAGTGCACTGCACTGCACTCTTTTGACAATCTGTGCTCTTCCTCTCTCTCTCAGGCGAGCCAGTAATGTGTTGTGGAGCGCTCCTCCTTCTGTGTCGTTGCTTTGATCTGTAT
CTGTGGCTCTGTGTTGTGACTGTTCGTCCAGACAGACATACCTTTCTGCCAGGAAGTCTTTGGATGACCAAAAGCAGAGGCGTGGCGATGGCTGCAGGATGTGATGATGATCTCCACCGGCATCAATGGTGATGGAGGAAGGATGCATGCAAGAGCAGCGATCATAAGAGAAAAGTGAGACAGGAAGAGATCAGTTCCTC
GGAAACAGATTAGGCATTCGAATCCAGCGGCGGCAGTGTCACAATACCAAATTTCAGCGATGGCTTCAGGGAGGCTAATATGGAGGCGGACTTTCTTTCTAAGAGGGCACTAAACTCACTGGTCGGGGTCATCATGTGGCAAGAATGGAGGGCTGATATACTTATAACCCAGGATTCTCCCTAGAGGCTGACTCCAACTC
CTTGTTGGACGTTTTTGTCATACATCCTCTTCTGTTTACGGCTCATATGACAGCCACTTTTGGCTGCGGCTCGGTATTATACTTTGTTTGGTCCTTATATGATGCATTTGGTGTTTGATAGATGTGACTGACTGTGTATGTGACCATATTTTTATATGTATATGGACACTTTGATATACTGGTGAATATTGGATCCGTTT
CTCCTACTGGAGGGATTCCTGATGTTATTTTGTGGACATATGGTACTTTCTATTTGGACTTTTTTGATGCTGTTGATGATACATTTGACATGATGTATGGCTTGCCCTTGTGCACCCTCTGACAGGGTTTGTGAGAAGCATGTATATTTCTGACAGCTGGTATTATTTACTATTTCGTATATTAATAGTAAGTTATATTT
>TRINITY_DN43417_c1_g1_i3 from sample A6 / Example unspliced isoform:ACGGTGGAGAGAATTCGACCGTTCAGAAAAGCTAATCCATCATCTATTTAGTAACTATCATCTGGTTTCAGTAACCTTCTCTTCTTGCAGTGCACTGCACTGCACTCTTTTGACAATCTGTGCTCTTCCTCTCTCTCTCAGGCGAGCCAGTAATGTGTTGTGGAGCGCTCCTCCTTCTGTGTCGTTGCTTTGATCTGTAT
CTGTGGCTCTGTGTTGTGACTGTTCGTGTATGTGTAATTTTTGTTGTCTTTCTGTGTTTTTGTTTGTATCATTCAGTCTGCATTTGTTGCCTTTCTTTGTTTTTGTTTGGGACTTTCAGTTTGCATTTGTTGTTAAATGACGAGTCTGAGAGAGACGGCCGGCCACAGCCAGACAGACATACCTTTCCGCCAGGAAGTCT
TTGGATGACCAAAAGCAGAGGCGTGGCGATGGCTGCAGGATGTGATGATGATCTCCACCGGCATCAATGGAGGAAGGATGCATGCAAGAGCAGCGATCATAAGAGAAAAGTGAGACAGGAAGAGATCAGTTCCTCGGAAACAGATTAGGCATTCGAATCCAGCGGCGGCAGTGTCACAATACCAATTTCAGCGATGGCTT
CAGGGAGGCTAATATGGAGGCGGACTTTCTTTCTAAGAGGGCACTAAACTCACTGGTCGGGGTCATCATGTGGCAAGAATGGAGGGCTGATATACTTATAACCCAGGgttcttataatttacattggacatgatgcttgttgttattgatttttgttattatattttttgatgctcctatattcgcgggttgatatactt
atatgtcttttagctctatgtgcagATTCTCCCTAGAGGCTGACTCCAACTCCTTGTTGGACGTTTTTGTCATACATCCTCTTCTGTTTACGGCTCATATGACAGCCACTTTTGGCTGCGGCTCGGTATTATACTTTGTTTGGTCCTTATATGATGCATTTGGTGTTTGATAGATGTGACTGACTGTGTATGTGACCATA
TTTTTATATGTATATGGACACTTTGATATACTGGTGAATATTGGATCCGTTTCTCCTACTGGAGGGATTCCTGATGTTATTTTGTGGACATATGGTACTTTCTATTTGGACTTTTTTGATGCTGTTGATGATACATTTGACATGATGTATGGCTTGCCCTTGTGCACCCTCTGACAGGGTTTGTGAGAAGCATGTATATT
TCTGACAGCTGGTATTATTTACTATTTCGTATATTAATAGTAAGTTATATTT