sp|Q84WV6|MORC1_ARATH ----> Protein MICRORCHIDIA 1
Intron 1 GTAAGTTATA ... TTTCACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.86 | 109 | 30 | 31 |
| A2 | 16.47 | 71 | 16 | 12 |
| A3 | 19.05 | 102 | 17 | 31 |
| A4 | 20.19 | 83 | 18 | 24 |
| A5 | 18.18 | 36 | 10 | 6 |
| A6 | 10.68 | 46 | 6 | 5 |
| A7 | 15.36 | 157 | 29 | 28 |
| A8 | 17.48 | 59 | 7 | 18 |
| A9 | 17.72 | 137 | 22 | 37 |
| A10 | 15.9 | 119 | 16 | 29 |
>TRINITY_DN110665_c1_g1_i6 from sample A5 / Example spliced isoformAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGAAGCTTTAAGGTGATTGTGAAGGAGGA
CATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGACCAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAA
AAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTTTGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCAC
TAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGACGAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGT
ATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACATTGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACAC
CAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAGAGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCAT
GAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGTCAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCC
ACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGATGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAAC
ACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTATGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGA
TCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCAAAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACA
CAGATAAGGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATCCATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTGCATATGCATCTATTCTTTATCTAAGGAAGCTGCCGAATTTTCAGATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCT
GATGATCTAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTGTTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGG
TGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAACAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCA
TTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGTTGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAACTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCTGTGAG
GACAATATACAACTATTCATGAGATGTGAACAATATCGTCATAGACAGCTGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGA
AAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATTTTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCA
TTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACAC
AGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCCATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCC
ATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTCACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACT
GTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTTGGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATG
TCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCA
>TRINITY_DN110665_c1_g1_i11 from sample A5 / Example unspliced isoform:AGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAATTATAG
ATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGACCAGTT
TACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTTTGAGG
GACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGACGAGGA
TACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACATTGAGC
GTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAGAGAAT
GATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGTCAGAC
TAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGATGAGA
TCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATgtaagttatagaggtcttatttcatctgggaa
tgtagtggaaatttgttaggacttaggcagcgacctgcaaaaatttatttgtcgattgtatttgtgtggtatacttgtaacttgtaagtctattgggcctaacgcccttattgcatggtttgacatggactaaatctagaagattgatctatctattttcacacagATGGTAATGGTTTCAAAACAAGCACTATGAGGCT
AGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCAAAAAACA
TGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAAGG
Intron 2 GTATGAAGTT ... TCAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.52 | 95 | 9.4 | 10 |
| A2 | 15.74 | 91 | 4.2 | 17 |
| A3 | 20.41 | 78 | 2 | 20 |
| A4 | 21.33 | 59 | 0 | 16 |
| A5 | 13.64 | 19 | 0 | 3 |
| A6 | 17.5 | 198 | 14.8 | 42 |
| A7 | 17.27 | 340 | 17 | 71 |
| A8 | 16.75 | 333 | 12 | 67 |
| A9 | 15.17 | 246 | 5.6 | 44 |
| A10 | 10.55 | 178 | 2.6 | 21 |
>TRINITY_DN114182_c0_g2_i11 from sample A3 / Example spliced isoformACAATATAGAATAAACATGCTCTTATTCTTGATTCTTGAAATCGTGGTTTCAGGGAGGACAAAATATTAGCTTGTATTGTTTTGCAGCTACTGTACATATTGTTGCATGTATGTGTGATAGTAACAATGCTTCTTTTGCTTTTAGTCCATGTTCTATCAAATAATATTGTATGTTTCTGTGGGTTTCACAGGATATAAGA
TTGCGAGGTGGACTTAAGCCAGGCAGATCCATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTGCATATGCATCTATTCTTTATCTAAGGAAGCTGCCGAATTTTCAGATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCTGATGATCTAAAATTTTCCAA
AGTAGTAATCTACAAGCCACAACTCGGTGTTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAG
CAAACTTCATAGAACCTGCACATGACAAACAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTG
GCAAGTGTTGTTCTAGGACTGCCAAGTGTTGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAACTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCTGTGAGGACAATATACAACTATTCAT
GAGATGTGAACAATATCGTCATAGACAGCTGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACTAGAATCCAAATCA
ATGTGCATGGTTAAAATGTGCTTCGGATTTTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTAACAATCTGTATAG
GGTTTTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCATTATATTT
TCTTCTACCTCTTGATTATTTCCCAGGCCATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCCTATGTAAAACTGA
CCTGTTGCATTAAGCATTGTTCCATGGTCACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAATGAATGATAATTC
ATATAAAAGTTTCCTACCTTTCGAGAGTTGGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAATAATCCTATAACC
GGTTCAAACTGGTTAATGAAAATATGGC
>TRINITY_DN114182_c0_g2_i12 from sample A3 / Example unspliced isoform:AAAGACTGGATATGTTGAGgtatgaagttctttttatgttagtagtatgaatccattgcaatatgtgttatagcttattgattctggatcttgggatcaaaacgaaagtattgctatttcagattgttgttgatgtactggatttgatcttctatttgggaaggttttaaacatttgaacaacttagtttctattgcatg
cttttttggttcctccaattgtttatccagtgcagttgttcaaatgcagGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATTTTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTG
GTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAA
TTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCCATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAG
GTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTCACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCA
TTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTTGGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATG
TGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGC
Intron 3 GTAAGGCAAA ... CTTTGATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.72 | 165.1 | 14.9 | 17.2 |
| A2 | 11.78 | 144.6 | 11 | 19 |
| A3 | 7.96 | 135.6 | 6.1 | 11.9 |
| A4 | 8.07 | 85.6 | 6.2 | 8.3 |
| A5 | 5.63 | 51.8 | 9.4 | 3.2 |
| A6 | 10.59 | 312.4 | 7.3 | 37.2 |
| A7 | 6.64 | 605.8 | 14 | 43.2 |
| A8 | 7.17 | 489.8 | 11.5 | 39.7 |
| A9 | 5.22 | 449.8 | 10.9 | 26.5 |
| A10 | 4.51 | 355.8 | 13.3 | 18 |
>TRINITY_DN127019_c0_g1_i23 from sample A1 / Example spliced isoformGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAAT
TATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGAC
CAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTT
TGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGAC
GAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACAT
TGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAG
AGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGT
CAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGA
TGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTA
TGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCA
AAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAAGGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATC
CATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTGCATATGCATCTATTCTTTATCTAAGGAAGCTGCCGAATTTTCAGATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCTGATGATCTAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTG
TTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAA
CAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGT
TGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAACTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCTGTGAGGACAATATACAACTATTCATGAGATGTGAACAATATCGTCATAGACAGC
TGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATT
TTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAAC
ATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCC
ATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTC
ACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTT
GGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCA
AAACATTTCTCATTTGCTTCTAGTCAAATATTTTAGATAAGGTGCTACGTGTGGTGACATTTGTGAGGTATCCAACCAATA
>TRINITY_DN127019_c0_g1_i9 from sample A1 / Example unspliced isoform:AAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGTTGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAA
TGTTCAGATGTGAACAATATCGTCATAGACAGCTGGAGTTAAACCAGATGgtaaggcaaagtcatttgatacttgacaatcattatgctctttttaacttattgaagaggtctgactctgaaggagtgaatattagatcaaaaacttgactgatcatactgatattaccatcaccatagttaagctgcgtgtcctttgct
gcttaaatgtgtaaccttttgctttgattagATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGTATGAAGTTCTTTTTATGTTAGTAGTATGAATCCATTGCAATATGTGTTATAGCTTATTGATTCTGG
ATCTTGGGATCAAAACGAAAGTATTGCTATTTCAGATTGTTGTTGATGTACTGGATTTGATCTTCTATTTGGGAAGGTTTTTAACATTTGAACAACTTAGTTTCTATTGCATGCTTTTTTGGTTCCTCC
Intron 4 GCCGTCACTT ... TATTCATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.95 | 59.9 | 81 | 175 |
| A2 | 69.72 | 49.6 | 67 | 148 |
| A3 | 65.29 | 54.8 | 62 | 135 |
| A4 | 68.66 | 29.2 | 43 | 81 |
| A5 | 76.22 | 10.7 | 13 | 51 |
| A6 | 68.81 | 94.1 | 100 | 289 |
| A7 | 71.6 | 162.9 | 176 | 582 |
| A8 | 71.31 | 131.3 | 158 | 453 |
| A9 | 70.89 | 124 | 127 | 429 |
| A10 | 75.12 | 81.3 | 104 | 359 |
>TRINITY_DN127019_c0_g1_i9 from sample A1 / Example spliced isoformAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGTTGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAA
TGTTCAGATGTGAACAATATCGTCATAGACAGCTGGAGTTAAACCAGATGGTAAGGCAAAGTCATTTGATACTTGACAATCATTATGCTCTTTTTAACTTATTGAAGAGGTCTGACTCTGAAGGAGTGAATATTAGATCAAAAACTTGACTGATCATACTGATATTACCATCACCATAGTTAAGCTGCGTGTCCTTTGCT
GCTTAAATGTGTAACCTTTTGCTTTGATTAGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGTATGAAGTTCTTTTTATGTTAGTAGTATGAATCCATTGCAATATGTGTTATAGCTTATTGATTCTGG
ATCTTGGGATCAAAACGAAAGTATTGCTATTTCAGATTGTTGTTGATGTACTGGATTTGATCTTCTATTTGGGAAGGTTTTTAACATTTGAACAACTTAGTTTCTATTGCATGCTTTTTTGGTTCCTCC
>TRINITY_DN127019_c0_g1_i23 from sample A1 / Example unspliced isoform:GAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAAT
TATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGAC
CAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTT
TGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGAC
GAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACAT
TGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAG
AGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGT
CAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGA
TGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTA
TGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCA
AAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAAGGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATC
CATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTGCATATGCATCTATTCTTTATCTAAGGAAGCTGCCGAATTTTCAGATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCTGATGATCTAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTG
TTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAA
CAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGT
TGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGgccgtcacttgtgggaaggaactacaatcagttgggggtacttcaaataaattagttaataacatctgtgaggacaatatacaactattcatgagATGTGAACAATATCGTCATAGACAGC
TGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATT
TTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAAC
ATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCC
ATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTC
ACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTT
GGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCA
AAACATTTCTCATTTGCTTCTAGTCAAATATTTTAGATAAGGTGCTACGTGTGGTGACATTTGTGAGGTATCCAACCAATA
Intron 5 GTTTATTTTT ... TTTTCCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.4 | 51.3 | 25 | 5 |
| A2 | 51.36 | 32.5 | 18 | 3 |
| A3 | 44.05 | 30.3 | 13 | 5 |
| A4 | 45.79 | 45.1 | 15 | 6 |
| A5 | 56.09 | 16.9 | 16 | 1 |
| A6 | 38.69 | 8.1 | 1 | 1 |
| A7 | 49.67 | 62 | 30 | 0 |
| A8 | 49.57 | 18.8 | 9 | 1 |
| A9 | 42.84 | 28.3 | 7 | 0 |
| A10 | 56.55 | 22.6 | 18 | 0 |
>TRINITY_DN127019_c0_g1_i12 from sample A1 / Example spliced isoformGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAAT
TATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGAC
CAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTT
TGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGAC
GAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACAT
TGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAG
AGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGT
CAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGA
TGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTA
TGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCA
AAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGGTGCATGATTTCTAACCAAATGGTGTTTTTTGATTGGATCGAGGTTTGTTCTAGTGTCTAAGAGCATTGAATAATTATCTTCACTAGTTGACAGTAATGTATTTAATGTTACAATGTCTTACTGTGCTAGGCATTTT
ATTTTGATTGAAGGAAATCCCTTGAAGAGGACTGGTTACTCGTAGTCTTCTGGAGGAGTTGTTTTGCTTTGCAGTTTCTCAGTGGCCTGGTCTTTCCTCAATTGCCATTCAGACTGTTTGCTCCCTTTGCCTAGACCTAGTTTTAATTTAGAGATGTTAGCCTTTATATTCTGGCTACTGGAACTCTTGGTGTGTGACCA
GACCTGCAACCAGCTATATTAGAACCATGGAAAAGTCTGTATTTTTTGGATTCAAGCAAACACTGAGTAAAATAAAGTATAATATTTCTAATTATATATGAACAAATCTCGAGGGAAAACAAGGTTTGGG
>TRINITY_DN127019_c0_g1_i10 from sample A1 / Example unspliced isoform:GAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAAT
TATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGAC
CAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTT
TGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGAC
GAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACAT
TGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAG
AGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGT
CAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGgtttatttttgtttttggtaaaattgcagtttagatatcttgtgtatctgttaaccgtgaatttagatcaatgtcagttttatgatctatttataattttatacat
tctttgattctttcagggcagttaaaacattgagtttaaaataaagtgtttgactcttatagctctattcttgtgagcaagtttgcatgaggctaaacagtgaatgagtttcagttttagattgtgtttgaactgtcttttaatattactttcttctggcatctatgatctctaatagctgtgctgtgtctgttctgata
atatagtattgatttttctgataatatagtaatattgtaaatcaagttatgttgatttagctacagcctccacttgaagaaagtgattttcacaatgacagttttctttttccccagGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGGTGTGTAT
ATTATGTTGCTCATTTGAATGATATGATGATGCACATAAAATATATAAATTAGAGTATCCTTGTGTTAGTTATGGTGAAACTTCTGTTCAGGAACTTATCTTTCATTTTTAGTCTGCAGTTTATCTTTCTTGTGTTTTGGAAAGTAATTGTGGAAATCTGCATTCCAAAGCTCAGTTCATGCTGTTCTTCATCTTTTCTG
TGAAAATTAATTGACTCATATGTCAGAACTTGTCTTGTGTATAGTTGTGAATGATTTTGTCTGCTGCTTGGTGAATATTTGCAGTTAGAGTTTCAATTGCCCTCTAGAAGAGCAATGGTCAAGCTAAAAATATAAATTAAGAACTGCCAAAAATCTTAAAATCGTGAGGTATACACAGTGAATGATTTGGATTCCACACA
GTCAAATACAATACCTTTCTGTAATGTACCTTTATGGATGTAAGGCACACTAGGAAGAAGATTGAAGGAAAAACAATGACTAGTTTTAAACAAAACTTGTAGAAA
Intron 6 GTAGGTAGAA ... GATGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.32 | 37 | 93 | 91 |
| A2 | 72.08 | 37 | 104 | 87 |
| A3 | 74.02 | 33 | 101 | 87 |
| A4 | 70.43 | 34 | 83 | 79 |
| A5 | 81.67 | 11 | 54 | 44 |
| A6 | 60 | 33 | 68 | 31 |
| A7 | 65.29 | 59 | 127 | 95 |
| A8 | 59.85 | 53 | 121 | 37 |
| A9 | 72.6 | 30 | 93 | 66 |
| A10 | 72.55 | 28 | 84 | 64 |
>TRINITY_DN127019_c0_g1_i4 from sample A1 / Example spliced isoformGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGAAGCTTTAAGGTGATTGTGAAG
GAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGACCAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAA
TTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTTTGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATG
CCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGACGAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGA
TTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACATTGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTA
CACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAGAGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAA
ACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGTCAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAAC
CTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGATGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGA
AGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTATGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCA
TCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCAAAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTT
TGACACAGATAAGGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATCCATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTGCATATGCATCTATTCTTTATCTAAGGAAGCTGCCGAATTTTCAGATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTA
TAGCTGATGATCTAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTGTTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGA
AGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAACAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACC
TTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGTTGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAACTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCT
GTGAGGACAATATACAACTATTCATGAGATGTGAACAATATCGTCATAGACAGCTGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACA
TTGGAAAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATTTTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTC
AAGCATTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTT
TACACAGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCCATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTG
GTTCCATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTCACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTT
AAACTGTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTTGGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTAT
TTATGTCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCAAAACATTTCTCATTTGCTTCTAGTCAAATATTTTAGATAAGGTGCTACGTGTGGTGACATTTGTGAGGTATCCAACCAATA
>TRINITY_DN127019_c0_g1_i23 from sample A1 / Example unspliced isoform:GAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAgtaggtagaatcaaagccctaat
tatagatatattcattgatctggtgtgtatgcaaaccctcatctgatatgatcagatttgccctagaagattcttgcaagtacggtcaaggtgtgatgcctttaatattgttggatgtgacagGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGAC
CAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTT
TGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGAC
GAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACAT
TGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAG
AGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGT
CAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGA
TGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTA
TGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCA
AAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAAGGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATC
CATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTGCATATGCATCTATTCTTTATCTAAGGAAGCTGCCGAATTTTCAGATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCTGATGATCTAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTG
TTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAA
CAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGT
TGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAACTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCTGTGAGGACAATATACAACTATTCATGAGATGTGAACAATATCGTCATAGACAGC
TGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATT
TTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAAC
ATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCC
ATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTC
ACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTT
GGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCA
AAACATTTCTCATTTGCTTCTAGTCAAATATTTTAGATAAGGTGCTACGTGTGGTGACATTTGTGAGGTATCCAACCAATA
Intron 7 GTATACTTTG ... TCTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.11 | 78 | 21 | 40 |
| A2 | 19.42 | 83 | 13 | 27 |
| A3 | 20.88 | 72 | 8 | 30 |
| A4 | 21.21 | 65 | 13 | 22 |
| A5 | 18.68 | 37 | 2 | 15 |
| A6 | 20.93 | 51 | 5 | 22 |
| A7 | 21.85 | 93 | 14 | 38 |
| A8 | 17.65 | 42 | 5 | 13 |
| A9 | 16.86 | 106 | 10 | 33 |
| A10 | 17.84 | 99 | 11 | 32 |
>TRINITY_DN127019_c0_g1_i12 from sample A1 / Example spliced isoformGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAAT
TATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGAC
CAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTT
TGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGAC
GAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACAT
TGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAG
AGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGT
CAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGA
TGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTA
TGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCA
AAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGGTGCATGATTTCTAACCAAATGGTGTTTTTTGATTGGATCGAGGTTTGTTCTAGTGTCTAAGAGCATTGAATAATTATCTTCACTAGTTGACAGTAATGTATTTAATGTTACAATGTCTTACTGTGCTAGGCATTTT
ATTTTGATTGAAGGAAATCCCTTGAAGAGGACTGGTTACTCGTAGTCTTCTGGAGGAGTTGTTTTGCTTTGCAGTTTCTCAGTGGCCTGGTCTTTCCTCAATTGCCATTCAGACTGTTTGCTCCCTTTGCCTAGACCTAGTTTTAATTTAGAGATGTTAGCCTTTATATTCTGGCTACTGGAACTCTTGGTGTGTGACCA
GACCTGCAACCAGCTATATTAGAACCATGGAAAAGTCTGTATTTTTTGGATTCAAGCAAACACTGAGTAAAATAAAGTATAATATTTCTAATTATATATGAACAAATCTCGAGGGAAAACAAGGTTTGGG
>TRINITY_DN127019_c0_g1_i17 from sample A1 / Example unspliced isoform:GAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAAATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAAT
TATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGAC
CAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTT
TGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGAC
GAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACAT
TGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAG
AGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGT
CAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGA
TGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTA
TGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGgtatactttgtaatgtttaaagttaaatctgatcaatatcttccaggaaaatgatctcttgatttcaattat
tgtatcttttgtagGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCAAAAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGGTGCATGATTTCTAACCAAATGGTGTTTTTTGATTGGATCGAGGTTTGTT
CTAGTGTCTAAGAGCATTGAATAATTATCTTCACTAGTTGACAGTAATGTATTTAATGTTACAATGTCTTACTGTGCTAGGCATTTTATTTTGATTGAAGGAAATCCCTTGAAGAGGACTGGTTACTCGTAGTCTTCTGGAGGAGTTGTTTTGCTTTGCAGTTTCTCAGTGGCCTGGTCTTTCCTCAATTGCCATTCAGA
CTGTTTGCTCCCTTTGCCTAGACCTAGTTTTAATTTAGAGATGTTAGCCTTTATATTCTGGCTACTGGAACTCTTGGTGTGTGACCAGACCTGCAACCAGCTATATTAGAACCATGGAAAAGTCTGTATTTTTTGGATTCAAGCAAACACTGAGTAAAATAAAGTATAATATTTCTAATTATATATGAACAAATCTCGAG
GGAAAACAAGGTTTGGG
Intron 8 GTAGAATCAA ... GATGTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.34 | 39 | 94 | 91 |
| A2 | 72.69 | 37 | 110 | 87 |
| A3 | 73.44 | 34 | 101 | 87 |
| A4 | 70.59 | 35 | 89 | 79 |
| A5 | 82.4 | 11 | 59 | 44 |
| A6 | 59.04 | 34 | 67 | 31 |
| A7 | 64.64 | 61 | 128 | 95 |
| A8 | 57.35 | 58 | 119 | 37 |
| A9 | 73.02 | 29 | 91 | 66 |
| A10 | 73.6 | 26 | 81 | 64 |
>TRINITY_DN42222_c1_g1_i8 from sample A7 / Example spliced isoformATAGGAGTGATTTTACATAAACAAAACAACAATTAGAGAGAAGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAA
ATTTGGGTGGGAAAACAGAGTAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAAGACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGACCAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGG
AAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATGAAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTTTGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTG
ATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTGAATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGACGAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGG
CATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCAGGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACATTGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTT
GTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATATTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAGAGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAA
TATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGTGTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGTCAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAA
TGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATGGGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGATGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATG
GATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATACTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTATGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAAC
TGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGAGCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCAAAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTG
TTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAAGGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATCCATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTGCATATGCATCTATTCTTTATCTAAGGAAGCTGCCG
AATTTTCAGATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCTGATGATCTAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTGTTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCT
TATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAACAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATC
AAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGTTGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAA
CTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCTGTGAGGACAATATACAACTATTCATGAGATGTGAACAATATCGTCATAGACAGCTGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACA
AAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATTTTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGC
AATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAAT
ACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCCATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAG
ATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTCACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGA
TGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTTGGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCAT
AATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCAAAACATTTCTCATTTGCTTCTAGTCAAATATTTTAGATAAGGTGCTACGTGTGGTGACATTTGTGAGGTATCCAACCAATATTTACTATTAGCAGTATTG
TTGTACTGGCACTGTTTTCCTGGAACACGCTAGATTGGTAACTTTTTGTTTGAGATGTTTGAATATAAAGGTTATAGCCTTTCTATTTAGGTGAATTGAGG
>TRINITY_DN42222_c1_g1_i2 from sample A7 / Example unspliced isoform:ATAGGAGTGATTTTACATAAACAAAACAACAATTAGAGAGAAGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAA
ATTTGGGTGGGAAAACAGAGTAGgtagaatcaaagccctaattatagatatattcattgatctggtgtgtatgcaaaccctcatctgatatgatcagatttgccctagaagattcttgcaagtacggtcaaggtgtgatgcctttaatattgttggatgtgacagGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAA
GACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGACCAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATG
AAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTTTGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGATCTCACAATCTCTTTGGCAAGTTTCTAATTAGTTA
AAGGTTACAAAGCGTATAAAGGTTTTGGCACTTTTGGGTCAA
Intron 9 GCATATGCAT ... GAATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 36 | 69 | 63 |
| A2 | 71.08 | 24 | 59 | 59 |
| A3 | 68.18 | 35 | 70 | 80 |
| A4 | 76.06 | 17 | 55 | 53 |
| A5 | 77.39 | 13 | 38 | 51 |
| A6 | 79.41 | 14 | 51 | 57 |
| A7 | 77.62 | 47 | 160 | 166 |
| A8 | 70.21 | 35 | 78 | 87 |
| A9 | 71.26 | 49 | 127 | 116 |
| A10 | 73.45 | 47 | 135 | 125 |
>TRINITY_DN45597_c10_g2_i2 from sample A10 / Example spliced isoformGGAGGAGTGATTTTACATAAACAAAACAACAATTAGAGAGAAGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAA
ATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAATTATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAA
GACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGACCAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATG
AAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTTTGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTG
AATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGACGAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCA
GGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACATTGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATA
TTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAGAGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGT
GTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGTCAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATG
GGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGATGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATA
CTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTATGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGA
GCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCAAAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAA
GGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATCCATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCTGATGATCTAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTGTTG
GGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTAGGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAACAA
GATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAATCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGTTGT
TCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAACTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCTGTGAGGACAATATACAACTATTCATGAGATGTGAACAATATCGTCATAGACAGCTGG
AGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACTAGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATTTTT
TTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTAACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAACATT
CAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGATATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCCATC
TTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCCTATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTCACT
GCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAATGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTTGGG
TTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAATAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCAAAA
CATTTCTCATTTGCTTCTAGTCAAATATTTTAGATAAGGTGCTACGTGTGGTGACATTTGTGAGGTATCCAACCAATATTTACTATTAGCAGTATTGTTGTACTGGCACTGTTTTCCTGGAACACGCTAGATTGGTAACTTTTTGTTTGAGATGTTTGAATATAAAGGTTATAGCCTTTCTATTTAGGTGAATTGAGACT
CTTCCACGGTGTCTTTAAAAGGAAATACTTGTGTATTTTATGCTTTTGGATGAACTTTGAAGTCAGACAGTGTATGTATTTTTCAGGTTTTTGGCC
>TRINITY_DN45597_c10_g2_i3 from sample A10 / Example unspliced isoform:GGAGGAGTGATTTTACATAAACAAAACAACAATTAGAGAGAAGAGAGAGGAGAGAGAAAAAAATAGTTAAAAGTAAAAAGAGTAAAAGGAAGAGAAACAGAGGCATGAAGAGGGAAGGAGGCATTAGTCAACAGAGGAGAAGATGAACAATCCATAACCTAAAATTGAAGAAAGCAGGGAAGGAAAGAAAACCCAACAAA
ATTTGGGTGGGAAAACAGAGTAGGTAGAATCAAAGCCCTAATTATAGATATATTCATTGATCTGGTGTGTATGCAAACCCTCATCTGATATGATCAGATTTGCCCTAGAAGATTCTTGCAAGTACGGTCAAGGTGTGATGCCTTTAATATTGTTGGATGTGACAGGAAGCTTTAAGGTGATTGTGAAGGAGGACATTTAA
GACACAGAGTGGCTGGTACAGTACTGGAAGGCAGGGCATGACCAGTTTACAATTAAAATTTGATTGAATTGGTCAAGGTTTGATAAATAAACACTGGAGGTGGAGTTTCAGTGGGCAGGAAGCTCAAAGGACAGAGTAGAGGAAAGGATAGGTTTGGTTTAAATCTTAAAGGATTTTTTTTGAAAGAATTAAAAAAAATG
AAGAAGTCAATTTAAGGGTTGAAGGCACAGATTTCTTATTTTTGAGGGACAATAAAGTCTTTTTTAGGAGAGGAAGAACCGCCAAAAGCAGAGGAAAATTTTGCCTAGTTTTTGTTATTTGCAGACTCAATCTCCTCTCGTGATCGAAGAGGTAAATAGTAAAGGGATTGTCTCATATGGAAGAGATGCCCACTAGTGTG
AATAATGTGGTTTTGAATGTTATTGATCTGAGCAGTGATGACGAGGATACACCACAGGAAAGAAATCCTCCAGAAAAACACTCATCCACATTAGTGGTTTTGAAAAATGAGCCGCAGTTGCAACAGTCGATGAGTACACAGGCATTTCAAAGTCATGAACTTCTTCGATCAACTAGTCATAGTTTTGATTGGTATCTGCA
GGATACCAAACCTGACTTGCAGCAAGATACTAAACCTGACATTGAGCGTACGATTCAATGCAATGGGCTGCCTCTTGCTCTAGATAATGTACAATATCAAAGCCAATTGGAGCAGGATAGATTGAGACAAGCTAATGGGTTTGTGCATCCAACTCTTTCTTCATTATCTCAACAAGAAAGGGTATCTACACACCAAAATA
TTTCTTCAAGAGAAGACGGTAGGTGCAGCCAAGCAGTGCAAGAGAATGATCGGATATTAAATAGGCAGGGAGAACAGCCATCACTGATATCTTCTTTAAGGCCCAGTCAGTCAGGCCAACTGTTACAACAAACTCAGAACAATATTGATATTCTTAGAACAAGTCAGACATCGCTAGCAAATGATCAAACCATGAGGTGT
GTTGAGAGAAGCATACCTCCAGCCATCTCTTCAATGCCGAGTCAGACTAGTTTTCATGCCCGAGAAAATGGTTTTCACCAGTTCTGGAGAGCAGGGGATTATAATGTTCAATCCACTCAAAAGAGAACTATAACAGGTGGAATGGACCATGTTCGTGTACACCCTAAATTCCTTCATTCTAATGCAACCTCCCACAAATG
GGCATTTGGAGCAATTGCCGAGCTTCTTGATAATGCAGTCGATGAGATCCAAAATGGTGCAACTTATGTCAAAGTGGACCAAATTTTTAACGCACAAGATTTCAGCCATGCTCTACTCTTCCAGGATGATGGAGGTGGTATGGATCCTGAATGCATTCGACGATGTATGAGTTTGGGATATTCCATGAAGAACACAAATA
CTACCATAGGACAATATGGTAATGGTTTCAAAACAAGCACTATGAGGCTAGGAGCAGATGCAATTGTATTCACACGGAGTGCTTGTGGAAGCTCTTCAACACAGAGTATTGGGCTACTTTCTTATACATTCTTGAGGAAAACTGGGCAGGACGACATCATTGTTCCAATGGTTGATTTTGAGCTTCCATCAGATCATGGA
GCACCAAGAATGTTAGTTCGCAGCACTGAAGATACTTGGGCAAAAAACATGGACACAATAAAGCGTTGGTCTCCCTATGTTACGGAAACTGAGCTTCTGAAGCAGTTTGACGACATTGGTCCTCACGGAACAAAAGTTATTGTTTACAACCTTTGGCTTAATGATGATGGCATCCTGGAGCTTGATTTTGACACAGATAA
GGAGGATATAAGATTGCGAGGTGGACTTAAGCCAGGCAGATCCATGAATGCACAAAATGAATTGATTCAGTCGCATATTTCTTACCGTCATTTATATTCATTACGTgcatatgcatctattctttatctaaggaagctgccgaattttcagATCATTCTAAGGGGAAAGCCAGTTGAATATCATAGTATAGCTGATGATC
TAAAATTTTCCAAAGTAGTAATCTACAAGCCACAACTCGGTGTTGGGATGAAAGAGGTATCGGTTGCAACAACCATAGGATTTACAAAGGAAGCACCTCTGATCAATGTTCATGGGTTCAATATCTATCATAAAAATCGGCTTATTATGCCCTTTTGGAAGGTTTGGCAAGACAATAGTAGTAGAGGAAGAGGTGTAGTA
GGTGTTCTTGAAGCAAACTTCATAGAACCTGCACATGACAAACAAGATTTTGAAAAAACTGCAGTCCTCCTTCGGTTGGAGTCAAGACTCAAGCAGATGACACTTGATTTCTGGAAAGAGAATTGTGATTTAATTGGATATCAAGGAAGAAGTAAATTGAGAAGAGAAGATCCACGGAGTGATTTACCTTCCATTCAGAA
TCCTCGTCCATTGGCAAGTGTTGTTCTAGGACTGCCAAGTGTTGTTCCAGGAGTATCACCTCAGCAAATTTCAAGTCGTCAGGGGATGCCGTCCTCGACAAATCCTGTTGGTAATGTTCAGGCCGTCACTTGTGGGAAGGAACTACAATCAGTTGGGGGTACTTCAAATAAATTAGTTAATAACATCTGTGAGGACAATA
TACAACTATTCATGAGATGTGAACAATATCGTCATAGACAGCTGGAGTTAAACCAGATGATTGCAAAGTTGGAGACTGAATTGGATGATGGCAAACGAAAATTTGCACAACTTGTATCAACTGTGGAAGCCCAAAAAAAACAAAGACTGGATATGTTGAGGAAAGTACACGGATGATAATAAGAGACATTGGAAAGCACT
AGAATCCAAATCAATGTGCATGGTTAAAATGTGCTTCGGATTTTTTTGGACTGCAATCGTTTCCTCGGGACCAGATTATTTGTTAATTTCTAAGGCGAGGAGGGAGTCTTGGTCTGGTATATTATGCTGCCCGTTTTTGTGCAATTAAATTGAAAGCCTTTGCCCTTTTTTGCCCACTGCATATTCTCAAGCATTTAGTA
ACAATCTGTATAGGGTTTTGTTGCAAACCTAGTAGGGAGAACATTCAATGGCAATGAGGAGATAGCTATCTGTGACTGTAAGATACCGACTTCACCACACACAATATCCAATTTTTTGTAGTATTAAATCATGGATAGAAATACTCCATTTGTAAAGCTGTACAGAAAATTTTTGATGAGCTGTGTTTTACACAGTAAGA
TATCATTATATTTTCTTCTACCTCTTGATTATTTCCCAGGCCATCTTACTGATGTTGTTGATCTTACCATTGGGGCAAGTAAATGAAAACCTAAGTAATCATGGAGGCTAGGTATTCACTGAGCATCGACTATCGATTGCAGATAGGAACCATGATTAGACCTATTCCTGAAATGTTTTGGGTCTCTGGTTCCATATTCC
TATGTAAAACTGACCTGTTGCATTAAGCATTGTTCCATGGTCACTGCACTGGGGACCATTGGATGGCTGGAGGCTCCCTCCTTGTGATCAGTTTATATCATTGCCAAACCATTTTTGTACAGAACGATTTCTTTCAACGAGATGTAGCTATTTATCTACTATCCAGATAGAAGGAATTTTTGAATTTTAAACTGTTGTAA
TGAATGATAATTCATATAAAAGTTTCCTACCTTTCGAGAGTTGGGTTACATGCCCTTGTTGTAGTATATGAATCTGACGACTCTAGTTATTTTCTCCTGATGAGTTGTATGTGGTACAAAATGTTTGAACAGATTTTATCATAATGCCCACATGCATATCCTAATGGTTCCATCTTTAGATGACTTATTTATGTCATCAA
TAATCCTATAACCGGTTCAAACTGGTTAATGAAAATATGGCAAAACATTTCTCATTTGCTTCTAGTCAAATATTTTAGATAAGGTGCTACGTGTGGTGACATTTGTGAGGTATCCAACCAATATTTACTATTAGCAGTATTGTTGTACTGGCACTGTTTTCCTGGAACACGCTAGATTGGTAACTTTTTGTTTGAGATGT
TTGAATATAAAGGTTATAGCCTTTCTATTTAGGTGAATTGAGACTCTTCCACGGTGTCTTTAAAAGGAAATACTTGTGTATTTTATGCTTTTGGATGAACTTTGAAGTCAGACAGTGTATGTATTTTTCAGGTTTTTGGCC