NA ----> NA
Intron 1 GTATGTGGTT ... TTCTCTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.38 | 5 | 0 | 11 |
| A2 | 41.18 | 5 | 2 | 5 |
| A3 | 40 | 3 | 0 | 4 |
| A4 | 57.14 | 3 | 2 | 6 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 41.94 | 54 | 19 | 59 |
| A7 | 43.42 | 43 | 11 | 55 |
| A8 | 46.21 | 39 | 35 | 32 |
| A9 | 42.44 | 59 | 34 | 53 |
| A10 | 49.66 | 37 | 15 | 58 |
>TRINITY_DN38556_c0_g1_i3 from sample A6 / Example spliced isoformGTCACTTTCTCTGAGATCCAGTTGACCTACATTGCATAAATCATGGAGAAGAGTTCCACGTATTCGTTATCGTTTTGAAATAGCTTGGGTCAGACTTCAAGGACCGGGCTGTTCTCTCTTATTGGCAGGCATGTCATAAATGCTCGTCAACAGGTCTTTTTATTTCAAAATCGAGCTGCTCCATGTTAATCTTTGGCATG
AGATTAGGTGAGGCTCCAGAGTCCAACATACAATTATGTAGTAACCTGTCATGTATATTGAGATTCACATAGAAAGGGGTTGTAGGTTCATCTTTCTCATTCATATGAGGTCCACATTGGACGGTGGGGGATTCATCAACAATATTTAATATCTATGATTGTTTTGCAGGAGACTTTCTTACAGGAGAATTAGCGGGTTG
ACTTGTAGGAGAAGGTCTAGGCCTGATATCGTATTTTCTTTGAAGCTCAGCCTGAAGAGTATCTGCAAACAGGCGATATTGGCCCGAAGATTGATCAAACTCATTTTCATGATTTCGATACAATTCGACTCCATTGTACAGTAATGAATTTTCATAGTCATCCTGGGTTAGATGCATATTATTTGATTCATCTTGCAACC
AATTCATATCTTCTTCAGTATCTAAATATTCTTCTTCCTCGAGCAGATCAAGGACGTCGTTATTATTGTTTTCCCTGACAGGAGGTCGAAGGGGCTGGTCCTTGGTCCTTTTTTCCCTATACATCATCTGTGGATTGTAAGGTCTTGTAAACTAGGTTGGGATTCTTGGCCTAGTACCCTACGGAGGTTTATTTGGGCTA
CTTCCCTCCAGTTTTATTCTAGTCACCTTATTTGACAGATTCTTTATGATTCAAGACATCTCCTCAATCTCAGCCTCTGGAGAAAATTTAGCACCCCAAGAGGTAACCAACCTCCTCTTTGGACTTCCCTTTATCTTTTTAATTTGGATAATTTCTTAGCTTAAGTTTACCGCCGATTGTCTTATTTTCTTCTACGTTAA
TGGCATCATCCTGCATGATGAGGAGGGTGGTTGATCTTCTTTCCCTCAGCATGATGGACAAATTTGATTGAAATGCCCTAACATAAGTAACGTTTGTAGTTGCTTTGGTGTGTCTGATATCTATGGGAATCTGATTAAGTAGTTTATTAAATCTTGCAGTA
>TRINITY_DN38556_c0_g1_i1 from sample A6 / Example unspliced isoform:GTCACTTTCTCTGAGATCCAGTTGACCTACATTGCATAAATCATGGAGAAGAGTTCCACGTATTCGTTATCGTTTTGAAATAGCTTGGGTCAGACTTCAAGGACCGGGCTGTTCTCTCTTATTGGCAGGCATGTCATAAATGCTCGTCAACAGGTCTTTTTATTTCAAAATCGAGCTGCTCCATGTTAATCTTTGGCATG
AGATTAGGTGAGGCTCCAGAGTCCAACATACAATTATGTAGTAACCTGTCATGTATATTGAGATTCACATAGAAAGGGGTTGTAGGTTCATCTTTCTCATTCATATGAGGTCCACATTGGACGGTGGGGGATTCATCAACAATATTTAATATCTATGgtatgtggttgatccaatgaccgtgctatgcaacaatttgtta
atttgtcaatttgatatacaagatttgtagccaactcagtcaaggggacatgaattttaagcttatccaattcatgctcaaaattgaaagatacgacattcttattaagttattttttatcattgtctgattttttgggtaagggcttgtcaacttccttgggaataggaggattcttggcctttttggttttgtccttt
gatgggtgattggttttggcagaggttgtagtatcaagatttttctctttagATTGTTTTGCAGGAGACTTTCTTACAGGAGAATTAGCGGGTTGACTTGTAGGAGAAGGTCTAGGCCTGATATCGTATTTTCTTTGAAGCTCAGCCTGAAGAGTATCTGCAAACAGGCGATATTGGCCCGAAGATTGATCAAACTCATT
TTCATGATTTCGATACAATTCGACTCCATTGTACAGTAATGAATTTTCATAGTCATCCTGGGTTAGATGCATATTATTTGATTCATCTTGCAACCAATTCATATCTTCTTCAGTATCTAAATATTCTTCTTCCTCGAGCAGATCAAGGACGTCGTTATTATTGTTTTCCCTGACAGGAGGTCGAAGGGGCTGGTCCTTGG
TCCTTTTTTCCCTATACATCATCTGTGGATTGTAAGGTCTTGTAAACTAGGTTGGGATTCTTGGCCTAGTACCCTACGGAGGTTTATTTGGGCTACTTCCCTCCAGTTTTATTCTAGTCACCTTATTTGACAGATTCTTTATGATTCAAGACATCTCCTCAATCTCAGCCTCTGGAGAAAATTTAGCACCCCAAGAGGTA
ACCAACCTCCTCTTTGGACTTCCCTTTATCTTTTTAATTTGGATAATTTCTTAGCTTAAGTTTACCGCCGATTGTCTTATTTTCTTCTACGTTAATGGCATCATCCTGCATGATGAGGAGGGTGGTTGATCTTCTTTCCCTCAGCATGATGGACAAATTTGATTGAAATGCCCTAACATAAGTAACGTTTGTAGTTGCTT
TGGTGTGTCTGATATCTATGGGAATCTGATTAAGTAGTTTATTAAATCTTGCAGTA
Intron 2 GTACAGTAAT ... CCTCGAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.73 | 3 | 12 | 4 |
| A2 | 55.56 | 2 | 3 | 2 |
| A3 | 33.33 | 1 | 1 | 0 |
| A4 | 47.72 | 5.5 | 6 | 4 |
| A5 | 100 | 0 | 3 | 1 |
| A6 | 61.59 | 41.5 | 84 | 49 |
| A7 | 57.81 | 27 | 49 | 25 |
| A8 | 58.12 | 25 | 47 | 22.4 |
| A9 | 67.53 | 25 | 62 | 42 |
| A10 | 58.44 | 16 | 26 | 19 |
>TRINITY_DN38556_c0_g1_i2 from sample A6 / Example spliced isoformGTCACTTTCTCTGAGATCCAGTTGACCTACATTGCATAAATCATGGAGAAGAGTTCCACGTATTCGTTATCGTTTTGAAATAGCTTGGGTCAGACTTCAAGGACCGGGCTGTTCTCTCTTATTGGCAGGCATGTCATAAATGCTCGTCAACAGGTCTTTTTATTTCAAAATCGAGCTGCTCCATGTTAATCTTTGGCATG
AGATTAGGTGAGGCTCCAGAGTCCAACATACAATTATGTAGTAACCTGTCATGTATATTGAGATTCACATAGAAAGGGGTTGTAGGTTCATCTTTCTCATTCATATGAGGTCCACATTGGACGGTGGGGGATTCATCAACAATATTTAATATCTATGGTATGTGGTTGATCCAATGACCGTGCTATGCAACAATTTGTTA
ATTTGTCAATTTGATATACAAGATTTGTAGCCAACTCAGTCAAGGGGACATGAATTTTAAGCTTATCCAATTCATGCTCAAAATTGAAAGATACGACATTCTTATTAAGTTATTTTTTATCATTGTCTGATTTTTTGGGTAAGGGCTTGTCAACTTCCTTGGGAATAGGAGGATTCTTGGCCTTTTTGGTTTTGTCCTTT
GATGGGTGATTGTTTTGGCAGAGGTTGTAGTATCAAGATTTTTCTCTTTAGATTGTTTTGCAGGAGACTTTCTTACAGGAGAATTAGCGGGTTGACTTGTAGGAGAAGGTCTAGGCCTGATATCGTATTTTCTTTGAAGCTCAGCCTGAAGAGTATCTGCAAACAGGCGATATTGGCCCGAAGATTGATCAAACTCATTT
TCATGATCTCGATACAATTCGACTCCATTATCAAGGACGTCGTTATTATTGTTTTCCCTGACAGGAGGTCGAAGGGGCTGGTCCTTGGTCCTTTTTTCCCTATACATCATCTGTGGATTGTAAGGTCTTGTAAACTAGGTTGGGATTCTTGGCCTAGTACCCTACGGAGGTTTATTTGGGCTACTTCCCTCCAGTTTTAT
TCTAGTCACCTTATTTGACAGATTCTTTATGATTCAAGACATCTCCTCAATCTCAGCCTCTGGAGAAAATTTAGCACCCCAAGAGGTAACCAACCTCCTCTTTGGACTTCCCTTTATCTTTTTAATTTGGATAATTTCTTAGCTTAAGTTTACCGCCGATTGTCTTATTTTCTTCTACGTTAATGGCATCATCCTGCATG
ATGAGGAGGGTGGTTGATCTTCTTTCCCTCAGCATGATGGACAAATTTGATTGAAATGCCCTAACATAAGTAACGTTTGTAGTTGCTTTGGTGTGTCTGATATCTATGGGAATCTGATTAAGTAGTTTATTAAATCTTGCAGTA
>TRINITY_DN38556_c0_g1_i3 from sample A6 / Example unspliced isoform:GTCACTTTCTCTGAGATCCAGTTGACCTACATTGCATAAATCATGGAGAAGAGTTCCACGTATTCGTTATCGTTTTGAAATAGCTTGGGTCAGACTTCAAGGACCGGGCTGTTCTCTCTTATTGGCAGGCATGTCATAAATGCTCGTCAACAGGTCTTTTTATTTCAAAATCGAGCTGCTCCATGTTAATCTTTGGCATG
AGATTAGGTGAGGCTCCAGAGTCCAACATACAATTATGTAGTAACCTGTCATGTATATTGAGATTCACATAGAAAGGGGTTGTAGGTTCATCTTTCTCATTCATATGAGGTCCACATTGGACGGTGGGGGATTCATCAACAATATTTAATATCTATGATTGTTTTGCAGGAGACTTTCTTACAGGAGAATTAGCGGGTTG
ACTTGTAGGAGAAGGTCTAGGCCTGATATCGTATTTTCTTTGAAGCTCAGCCTGAAGAGTATCTGCAAACAGGCGATATTGGCCCGAAGATTGATCAAACTCATTTTCATGATTTCGATACAATTCGACTCCATTgtacagtaatgaattttcatagtcatcctgggttagatgcatattatttgattcatcttgcaacc
aattcatatcttcttcagtatctaaatattcttcttcctcgagcagATCAAGGACGTCGTTATTATTGTTTTCCCTGACAGGAGGTCGAAGGGGCTGGTCCTTGGTCCTTTTTTCCCTATACATCATCTGTGGATTGTAAGGTCTTGTAAACTAGGTTGGGATTCTTGGCCTAGTACCCTACGGAGGTTTATTTGGGCTA
CTTCCCTCCAGTTTTATTCTAGTCACCTTATTTGACAGATTCTTTATGATTCAAGACATCTCCTCAATCTCAGCCTCTGGAGAAAATTTAGCACCCCAAGAGGTAACCAACCTCCTCTTTGGACTTCCCTTTATCTTTTTAATTTGGATAATTTCTTAGCTTAAGTTTACCGCCGATTGTCTTATTTTCTTCTACGTTAA
TGGCATCATCCTGCATGATGAGGAGGGTGGTTGATCTTCTTTCCCTCAGCATGATGGACAAATTTGATTGAAATGCCCTAACATAAGTAACGTTTGTAGTTGCTTTGGTGTGTCTGATATCTATGGGAATCTGATTAAGTAGTTTATTAAATCTTGCAGTA
Intron 3 GTATGTGGTT ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.89 | 4 | 0 | 11 |
| A2 | 69.23 | 2 | 2 | 7 |
| A3 | 38.46 | 4 | 0 | 5 |
| A4 | 100 | 0 | 2 | 6 |
| A5 | 33.33 | 2 | 0 | 2 |
| A6 | 44.55 | 56 | 19 | 71 |
| A7 | 46.5 | 42 | 11 | 62 |
| A8 | 50 | 35 | 35 | 35 |
| A9 | 46.6 | 51 | 34 | 55 |
| A10 | 51.95 | 37 | 15 | 65 |
>TRINITY_DN38556_c0_g1_i5 from sample A6 / Example spliced isoformGTCACTTTCTCTGAGATCCAGTTGACCTACATTGCATAAATCATGGAGAAGAGTTCCACGTATTCGTTATCGTTTTGAAATAGCTTGGGTCAGACTTCAAGGACCGGGCTGTTCTCTCTTATTGGCAGGCATGTCATAAATGCTCGTCAACAGGTCTTTTTATTTCAAAATCGAGCTGCTCCATGTTAATCTTTGGCATG
AGATTAGGTGAGGCTCCAGAGTCCAACATACAATTATGTAGTAACCTGTCATGTATATTGAGATTCACATAGAAAGGGGTTGTAGGTTCATCTTTCTCATTCATATGAGGTCCACATTGGACGGTGGGGGATTCATCAACAATATTTAATATCTATGGAGACTTTCTTACAGGAGAATTAGCGGGTTGACTTGTAGGAGA
AGGTCTAGGCCTGATATCGTATTTTCTTTGAAGCTCAGCCTGAAGAGTATCTGCAAACAGGCGATATTGGCCCGAAGATTGATCAAACTCATTTTCATGATTTCGATACAATTCGACTCCATTGTACAGTAATGAATTTTCATAGTCATCCTGGGTTAGATGCATATTATTTGATTCATCTTGCAACCAATTCATATCTT
CTTCAGTATCTAAATATTCTTCTTCCTCGAGCAGATCAAGGACGTCGTTATTATTGTTTTCCCTGACAGGAGGTCGAAGGGGCTGGTCCTTGGTCCTTTTTTCCCTATACATCATCTGTGGATTGTAAGGTCTTGTAAACTAGGTTGGGATTCTTGGCCTAGTACCCTACGGAGGTTTATTTGGGCTACTTCCCTCCAGT
TTTATTCTAGTCACCTTATTTGACAGATTCTTTATGATTCAAGACATCTCCTCAATCTCAGCCTCTGGAGAAAATTTAGCACCCCAAGAGGTAACCAACCTCCTCTTTGGACTTCCCTTTATCTTTTTAATTTGGATAATTTCTTAGCTTAAGTTTACCGCCGATTGTCTTATTTTCTTCTACGTTAATGGCATCATCCT
GCATGATGAGGAGGGTGGTTGATCTTCTTTCCCTCAGCATGATGGACAAATTTGATTGAAATGCCCTAACATAAGTAACGTTTGTAGTTGCTTTGGTGTGTCTGATATCTATGGGAATCTGATTAAGTAGTTTATTAAATCTTGCAGTA
>TRINITY_DN38556_c0_g1_i1 from sample A6 / Example unspliced isoform:GTCACTTTCTCTGAGATCCAGTTGACCTACATTGCATAAATCATGGAGAAGAGTTCCACGTATTCGTTATCGTTTTGAAATAGCTTGGGTCAGACTTCAAGGACCGGGCTGTTCTCTCTTATTGGCAGGCATGTCATAAATGCTCGTCAACAGGTCTTTTTATTTCAAAATCGAGCTGCTCCATGTTAATCTTTGGCATG
AGATTAGGTGAGGCTCCAGAGTCCAACATACAATTATGTAGTAACCTGTCATGTATATTGAGATTCACATAGAAAGGGGTTGTAGGTTCATCTTTCTCATTCATATGAGGTCCACATTGGACGGTGGGGGATTCATCAACAATATTTAATATCTATGgtatgtggttgatccaatgaccgtgctatgcaacaatttgtta
atttgtcaatttgatatacaagatttgtagccaactcagtcaaggggacatgaattttaagcttatccaattcatgctcaaaattgaaagatacgacattcttattaagttattttttatcattgtctgattttttgggtaagggcttgtcaacttccttgggaataggaggattcttggcctttttggttttgtccttt
gatgggtgattggttttggcagaggttgtagtatcaagatttttctctttagattgttttgcagGAGACTTTCTTACAGGAGAATTAGCGGGTTGACTTGTAGGAGAAGGTCTAGGCCTGATATCGTATTTTCTTTGAAGCTCAGCCTGAAGAGTATCTGCAAACAGGCGATATTGGCCCGAAGATTGATCAAACTCATT
TTCATGATTTCGATACAATTCGACTCCATTGTACAGTAATGAATTTTCATAGTCATCCTGGGTTAGATGCATATTATTTGATTCATCTTGCAACCAATTCATATCTTCTTCAGTATCTAAATATTCTTCTTCCTCGAGCAGATCAAGGACGTCGTTATTATTGTTTTCCCTGACAGGAGGTCGAAGGGGCTGGTCCTTGG
TCCTTTTTTCCCTATACATCATCTGTGGATTGTAAGGTCTTGTAAACTAGGTTGGGATTCTTGGCCTAGTACCCTACGGAGGTTTATTTGGGCTACTTCCCTCCAGTTTTATTCTAGTCACCTTATTTGACAGATTCTTTATGATTCAAGACATCTCCTCAATCTCAGCCTCTGGAGAAAATTTAGCACCCCAAGAGGTA
ACCAACCTCCTCTTTGGACTTCCCTTTATCTTTTTAATTTGGATAATTTCTTAGCTTAAGTTTACCGCCGATTGTCTTATTTTCTTCTACGTTAATGGCATCATCCTGCATGATGAGGAGGGTGGTTGATCTTCTTTCCCTCAGCATGATGGACAAATTTGATTGAAATGCCCTAACATAAGTAACGTTTGTAGTTGCTT
TGGTGTGTCTGATATCTATGGGAATCTGATTAAGTAGTTTATTAAATCTTGCAGTA