sp|Q9FKI0|FIMB5_ARATH ----> Fimbrin-5
Intron 1 GTGTGTCAAT ... TATATCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5 | 121 | 0 | 6 |
| A2 | 3.12 | 103.3 | 1 | 3 |
| A3 | 0.94 | 115.5 | 0 | 1 |
| A4 | 1.22 | 86.8 | 1 | 1 |
| A5 | 0 | 72.5 | 0 | 0 |
| A6 | 0.25 | 856 | 0 | 2 |
| A7 | 0 | 1005.5 | 0 | 0 |
| A8 | 0 | 927 | 0 | 0 |
| A9 | 0 | 889.5 | 0 | 0 |
| A10 | 0 | 752.3 | 0 | 0 |
>TRINITY_DN119456_c0_g1_i1 from sample A1 / Example spliced isoformGATGAGCGTAGACTTCATTATTATGATAACCAGCGGTAACTTTTATCATGCTTGTGTACTTTGTTTTAACTGTGTTGGATTGGTCTGTATAATGAATTACTGATTTGCCTTTTCCACTCTAGCTTGGAGACAACTCGACATGTTTCAATGATTACAATCATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGGTA
AGAATTTAGATTGAAGCTACTGTGCACTTGATTACATGGATTAGTGTTGAAGTTCATTACTCTGGTTCATCAAAATTTAGGTTCAAGTTTCTGCGCATTTAATTACATTGATTAGTATCGAAGTTCATTATTAATCAATTTGTACAACTGTTGCTTCTTTCAGTGATGCAACTGGATACACTTTCAATTTTTGTATTTGA
TGAGTTTTAACTTGCAGTGTTAGTACATCATGTTATTAGCTTGTCTTTTCTGATCTCTTTTGTTTCCTTAAACTGCAGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAG
AAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTTCTCAAGTCC
TGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTATTGGATTCCACGT
GAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATTTGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATTCTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTACCATGTCTAT
ATGGTTTGCATTAGTATAAATTAATTGTTTTGGTATGAATGCATCCTGTATGTTTCCCATAAATTCAATTGGAAAAGTATTTAAAGTTTGTTA
>TRINITY_DN119456_c0_g1_i3 from sample A1 / Example unspliced isoform:AGTGGGTGTCAGTGTTGAAGgtgtgtcaataacttttagtacataaatcatatacttcaattgtgagatcacaacagccaaatgctaagttgttgcctattatatctcagGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGGTATTCATCTGAAAC
TTTGTTAAGTTGGAACTTGAACCTTTTTTTATGAAGGTGCTCGTTCTTGAAGCTGGATGTTAGGCATCTTCCAACAAAACAATAATTCGTTTATTTCTGTTTGTTTATGATAGAAAATGGTGG
Intron 2 GTAAGTCCTT ... GAATGCCGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.47 | 33 | 51 | 19 |
| A2 | 43.06 | 41 | 39 | 23 |
| A3 | 37.8 | 65 | 50 | 29 |
| A4 | 36.76 | 43 | 38 | 12 |
| A5 | 35.24 | 34 | 31 | 6 |
| A6 | 36.48 | 276 | 215 | 102 |
| A7 | 37.2 | 379 | 305 | 144 |
| A8 | 41.79 | 257 | 204 | 165 |
| A9 | 34.52 | 387 | 280 | 128 |
| A10 | 37.39 | 319 | 256 | 125 |
>TRINITY_DN44225_c0_g3_i11 from sample A8 / Example spliced isoformAAAACAAAAAACAAAAAACAAAAAACAAAACCAGAAATCATTTACCTGCTCGAACTTTGCTCCCGCTCCCGACCTATCCCGAACTTTTCTCACGCTCGAACCCTAGTGCATTTACCATCCTGAATTGTTTCTGCGATGGCCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGCCATTCCAGCGTTGGGAAGGTGACGCGCC
TGAGCAATGCGCAGGCTCCATTGCAACAAGTTTGAAGCAGTGAGGGTTTCGCTGGGCGCTCTACGTTGGGGTTTGGCTTGAAGTTGAAAAAGCCCGGGTAGTGGAAGCTTGGCCCCATTGGTCCTGGAGAGCCATTTTTCTATTGGTATGGAATCCATTGTAGGCTGTACATGTCAGAACCAGAGCTAATCAAGGAAGTT
TTATCGAATAAATTCGGTCATTATGAGAAGGAGACCCCGGGCCTCTTTTATTGGCTTTGCTCGGGCGGGGACTGGTTTTTGTAGATGGATTGAGATGGGTCAAGCACAGGAGGATCGTGAGCCCTGTCTTCAATGTTGATACTTGATAAACTTAAGGTTTGGATTCTTGGAATGTCATACAATGGCTGTATAATAAGACT
TGATAATGGATGAAGAACTAATAAGACTTGATAATGGATGAAGAACTATAACAGTTTCTTGAGTAATGAATGAAAATTTCTGGCAATTCAGAAACAATTGTCACTTTGCATGTCTAGAACTATTGAATGTAGGTATGCTTATACAGAGCATAAAAAACACTTGAATATATGCACCAAGTTGTTATCAATCTATGCTTACA
ATTTGACCATATTATGCCTTTGCAGACCTCCCTAGCCATGTTACAGGGAAATGGTAGGTTGTTTAATAAATATGGAGTTAATGGCACATATATACCTAGTTATTATCAATCTATCTTAAAAAAAATTGAAGATATAATGCTCATACAAATCTCCCAATGCCATCTAGAGTGAAAACGTGGGTGCCTAATAATTATACCTA
ATAAGGATACAGTTAAGCAATTTAAGAGGAAAAAGCTTTATCAGATTCATCAACAGTGAAAAGACAGACTTTTGAATTGTAGCAAATTTTATAAATGACATTGATATCTTCACCTCAAGAGTGTTTTCCTCTATCAAGTCAAATTATATTTTATATGCTGTGAATTTGCCTACTAAACAAGGATATGCATTACCTAGACT
ATTTTTGGATAGTCCCCGGTAGTTGGAGTCTTTTAGAATATACCACTGGTTTTAGTTATGCTCTACTGTTTCCAATGGCAAACAATGGTGAAGATAATGGTTGCTTGCACTTCATCCATGCTCAAGAATTGGCTAGAGATGGTGGCTCAGACAGACTCTGACGGCAAAGAAATTGATGTTCATCAAGAGTTGAGAGCATT
AACAGCAGACATCATATCGCATACCGCTTTCGGTAGCAGTTACAATGAAGGCAAAGAAGTATTCGAATTGCAGAGAGAATTACAAGAAATGGCGGCCAAAGCTGAACAATCTGTCTTCATCCCAGGAAGCCAGTAATTACAGTATACTTAGCTTTCAATTATATAGTTTTGCATGTGACTGCAAGTTCTCTAGTACTTCG
ACTTCTGTGCTCCTGTTTTCTTTTTAACGTACTTTGTGACGTGCTGTGCTTAGGCTAGTGCCATAATCTGTAGACCTTTTACTTATTCACAAGGGTCTTCTTAGTGCTGTACACAGTCCATAAATCTTCTACACAATCATAATGACTCATAGTACTTATAATTAAGGATTTTGTACTTATATTCCTTGGATTTTTGGCAG
ATATATTCCTACAGGAAAGAACAGGTATGCCTGGAAGATCGATAGAAGAATTAAAGAAATCCTGAATTCTCTAATTCAAAGTAGGTTGGAACCGAGAACAACAAAAAGAACTCACGTTGGCTATGGAAATGACCTACTTGGAATCATGATGACTGCCAACCAGACAGAATTGAGTGCGACTCAAAGAAATCTGAGCATGA
CTATTGATGAAATCATGGATGAATGCAAGGAATTTTTCTTTGCAGGCCATGATACAACTTCCAATCTGTTAACCTGGGCAGTATTTTTGCTGGCGATAAATTTGGAATGGCAAGAAATATTAAGGAAAGAAGTTATCAGTATTTGTGGCACAGATATACCAGATGCAGACATGCTTACCAGGATGAAATCGGTGTGTATT
CCATATCATTTTTTTTTAATATTTTTAATCAACCATATTGCAGCCATCAATTTTGTTTGAAAAAATCATCATATATTTCATTAGGACTCAATACAAATGTGCCTAAAAATGTCCAGAATTCTGGTTTAGATCTATATAGG
>TRINITY_DN44225_c0_g3_i1 from sample A8 / Example unspliced isoform:AAAACAAAAAACAAAAAACAAAAAACAAAACCAGAAATCATTTACCTGCTCGAACTTTGCTCCCGCTCCCGACCTATCCCGAACTTTTCTCACGCTCGAACCCTAGTGCATTTACCATCCTGAATTGTTTCTGCGATGGCCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGCCATTCCAGCGTTGGGAAGGTGACGCGCC
TGAGCAATGCGCAGGCTCCATTGCAACAAGTTTGAAGCAGTGAGgtaagtcctttaatttatggcgtttttggttggcaatttgtagaggttaattcatttaccattcttttcatatttaacctttgttctctgtttgaatgccgagGGTTTCGCTGGGCGCTCTACGTTGGGGTTTGGCTTGAAGTTGAAAAAGCCCGG
GTAGTGGAAGCTTGGCCCCATTGGTCCTGGAGAGCCATTTTTCTATTGGTATGGAATCCATTGTAGGCTGTACATGTCAGAACCAGAGCTAATCAAGGAAGTTTTATCGAATAAATTCGGTCATTATGAGAAGGAGACCCCGGGCCTCTTTTATTGGCTTTGCTCGGGCGGGGACTGGTTTTTGTAGATGGATTGAGATG
GGTCAAGCACAGGAGGATCGTGAGCCCTGTCTTCAATGTTGATACTTGATAAACTTAAGGTTTGGATTCTTGGAATGTCATACAATGGCTGTATAATAAGACTTGATAATGGATGAAGAACTAATAAGACTTGATAATGGATGAAGAACTATAACAGTTTCTTGAGTAATGAATGAAAATTTCTGGCAATTCAGAAACAA
TTGTCACTTTGCATGTCTAGAACTATTGAATGTAGGTATGCTTATACAGAGCATAAAAAACACTTGAATATATGCACCAAGTTGTTATCAATCTATGCTTACAATTTGACCATATTATGCCTTTGCAGACCTCCCTAGCCATGTTACAGGGAAATGGTAGGTTGTTTAATAAATATGGAGTTAATGGCACATATATACCT
AGTTATTATCAATCTATCTTAAAAAAAATTGAAGATATAATGCTCATACAAATCTCCCAATGCCATCTAGAGTGAAAACGTGGGTGCCTAATAATTATACCTAATAAGGATACAGTTAAGCAATTTAAGAGGAAAAAGCTTTATCAGATTCATCAACAGTGAAAAGACAGACTTTTGAATTGTAGCAAATTTTATAAATG
ACATTGATATCTTCACCTCAAGAGTGTTTTCCTCTATCAAGTCAAATTATATTTTATATGCTGTGAATTTGCCTACTAAACAAGGATATGCATTACCTAGACTATTTTTGGATAGTCCCCGGTAGTTGGAGTCTTTTAGAATATACCACTGGTTTTAGTTATGCTCTACTGTTTCCAATGGCAAACAATGGTGAAGATAA
TGGTTGCTTGCACTTCATCCATGCTCAAGAATTGGCTAGAGATGGTGGCTCAGACAGACTCTGACGGCAAAGAAATTGATGTTCATCAAGAGTTGAGAGCATTAACAGCAGACATCATATCGCATACCGCTTTCGGTAGCAGTTACAATGAAGGCAAAGAAGTATTCGAATTGCAGAGAGAATTACAAGAAATGGCGGCC
AAAGCTGAACAATCTGTCTTCATCCCAGGAAGCCAGTAATTACAGTATACTTAGCTTTCAATTATATAGTTTTGCATGTGACTGCAAGTTCTCTAGTACTTCGACTTCTGTGCTCCTGTTTTCTTTTTAACGTACTTTGTGACGTGCTGTGCTTAGGCTAGTGCCATAATCTGTAGACCTTTTACTTATTCACAAGGGTC
TTCTTAGTGCTGTACACAGTCCATAAATCTTCTACACAATCATAATGACTCATAGTACTTATAATTAAGGATTTTGTACTTATATTCCTTGGATTTTTGGCAGATATATTCCTACAGGAAAGAACAGGTATGCCTGGAAGATCGATAGAAGAATTAAAGAAATCCTGAATTCTCTAATTCAAAGTAGGTTGGAACCGAGA
ACAACAAAAAGAACTCACGTTGGCTATGGAAATGACCTACTTGGAATCATGATGACTGCCAACCAGACAGAATTGAGTGCGACTCAAAGAAATCTGAGCATGACTATTGATGAAATCATGGATGAATGCAAGGAATTTTTCTTTGCAGGCCATGATACAACTTCCAATCTGTTAACCTGGGCAGTATTTTTGCTGGCGAT
AAATTTGGAATGGCAAGAAATATTAAGGAAAGAAGTTATCAGTATTTGTGGCACAGATATACCAGATGCAGACATGCTTACCAGGATGAAATCGGTGTGTATTCCATATCATTTTTTTTTAATATTTTTAATCAACCATATTGCAGCCATCAATTTTGTTTGAAAAAATCATCATATATTTCATTAGGACTCAATACAAA
TGTGCCTAAAAATGTCCAGAATTCTGGTTTAGATCTATATAGG
Intron 3 GTATTCATCT ... TTTATGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.45 | 68 | 39 | 2 |
| A2 | 37.5 | 50 | 30 | 6 |
| A3 | 29.47 | 61 | 25.5 | 1 |
| A4 | 41.43 | 41 | 29 | 1 |
| A5 | 35.19 | 35 | 19 | 1 |
| A6 | 27.78 | 520 | 200 | 5 |
| A7 | 27.47 | 647 | 245 | 14 |
| A8 | 28.08 | 575 | 224.5 | 9 |
| A9 | 27.16 | 553 | 206.3 | 10 |
| A10 | 27.22 | 460 | 172 | 1 |
>TRINITY_DN111578_c0_g2_i7 from sample A2 / Example spliced isoformGATAAGGGATAGTAAAGAGAGTTTAGATTACGGGGAAGAGTTGGAAAAATAATGAGAATTTGATTACGGGGAAGGTTTGAGAAGGGATTAATTATCATATACAAAATCGCCCGGTGGAATTTCCATCTTGTCATCAGGTGGGTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTA
CCGAATTCTCTTGAAAATTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTCTTTTTGTATCTTGGGTGTGTGTTCTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTCAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTGCAATTAATCAGAATGAAATACGAGTGACCACTCAG
GGGTTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGA
AGAGGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTAT
GGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGA
GTTCTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTAT
TGGATTCCACGTGAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATTTGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATGCTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTT
TACCATGTCTATATGGTTTGC
>TRINITY_DN111578_c0_g2_i1 from sample A2 / Example unspliced isoform:GTCATGTCTAGCATTCAATGATGAGCGTAGACTTCATTATTATGATAACCAGCGGTAACTTTTATCATGCTTGTGTACTTTGTTTTAACTGTGTTGGATTGGTCTGTATAATGAATTACTGATTTGCCTTTTCCACTCTAGCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTG
ATGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGgtattcatctgaaactttgttaagttggaacttgaacctttttttatgaaggtgctcgttct
tgaagctggatgttaggcatcttccaacaaaacaataattcgtttatttctgtttgtttatgatagAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAA
AGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTTCTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTA
TGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTATTGGATTCCACGTGAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATTTGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATG
CTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTACCATGTCTATATGGTTTGC
Intron 4 GTAAGTGCAT ... GTCATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.2 | 251 | 1 | 11 |
| A2 | 1.62 | 182 | 0 | 3 |
| A3 | 1.08 | 276 | 0 | 3 |
| A4 | 3.05 | 159 | 4 | 5 |
| A5 | 0 | 110 | 0 | 0 |
| A6 | 0 | 1212.5 | 0 | 0 |
| A7 | 0.21 | 1438 | 0 | 3 |
| A8 | 0.38 | 1035 | 0 | 4 |
| A9 | 0.36 | 1108 | 0 | 4 |
| A10 | 0.39 | 1009 | 0 | 4 |
>TRINITY_DN100712_c0_g1_i1 from sample A4 / Example spliced isoformCAAAAATCATTTACCTGCTCGAACTCTGCTCCCGCTCCCGACATATCTCGACCTCTAACTATGCTCACGCTCGAACTCTAGTGCATTTACCATCCTGGAGTTGTTTCTGCGATGGTCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGGCATTCCAGCGTTGGGAAGGTGATGCGCCTAAGCAATGCGCAAGCTCCATTGC
AGCAACGTTTGAAGCTATGAGGGGGGTTTCGCTGGGTTTTGCCAAGGGGATTTGTGGGTTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCGAATTCTCTTGAAAATTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTCTTTTTGTATCTTGGGTGTGTGTTCTTTGTGG
GTCTGAAATCAAGGGCATAGCTGGGCTTTTGAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTACAATTAATCAGAATGAAATACAAGTGACCACTCAGGGGTTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGG
CCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGAGGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTG
CCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTAC
>TRINITY_DN100712_c0_g1_i4 from sample A4 / Example unspliced isoform:TAGCTATTGGTGAAATAATCAAAgtaagtgcattttatatttgtaggaaattttcttgaattttatgcttctagtttttaacgttcttcttgtgaattttcatttcaaaggctcaaagcatattttataacatttttgtttgtctacacaattctgttgtcattgtagAGAAGAGTTCCTGGTCTACATCAGATTACAGC
AATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGAGGGGTTGTTGCCGTAAGTAGTATTGTGATAACTTCAGAATTTGAAGCTCATTATGCTAATTTGAATATTAAAAGAAATAGCATTCAACGTAAGCTTGTTCCCTAGCTATGTTTTCCAGCTTTTTTCACTATGTGGAGAAAGTGTCACCTGCAATA
TGGTTGTTTTTATTATTATAACTAATTAGAGTGGTCATGTCTAGCATTCAATGATGAGCGTAGACTTCATTATTATGATAACCGGCGGTAACTTTTATCATGCTTGTGTACTTTGTTTTAACTGTGTTGGATTGGTCTGTATAATGAATTACTGATTTGCCTTTTCCACTCTAGCTTGGAGACAACTCGACATGTTTCAA
TGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGGTAAGAATTTAGATTGAAGCTACTGTGCACTTGATTACATGGATTAGTGTTGAAGTTCATTACTCTGGTTCATCAAAATTTAGGTTCAAGTTTCTGCGCATTTAATTACATTGATTAGTATCGAAGTTCATTATTAATCAATTTGTACAAC
TGTTGCTTCTTTCAGTGATGCAACTGGATACACTTTCAATTTTTGTATTTGATGAGTTTTAAATTGCAGTGTTAGTACATCATGTTATTAGCTTGTCTTTTCTGATCTCTTTTGTTTCCTTAAACTGCAGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGA
AGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTAC
Intron 5 GTGGGTAACT ... CTCTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.98 | 58 | 172 | 53 |
| A2 | 65.65 | 45 | 125 | 47 |
| A3 | 70.37 | 48 | 172 | 56 |
| A4 | 70.37 | 24 | 80 | 34 |
| A5 | 54.13 | 25 | 50 | 9 |
| A6 | 70.23 | 442 | 1308 | 777 |
| A7 | 66.06 | 457 | 1230 | 549 |
| A8 | 70.04 | 516 | 1479 | 934 |
| A9 | 67.24 | 431 | 1160 | 609 |
| A10 | 66.45 | 308 | 867 | 353 |
>TRINITY_DN45960_c0_g1_i6 from sample A7 / Example spliced isoformGTTCATACATGCACTGAGTAGAAAATTCTGCGAAAGAGAAAGAAATAAAAAAGACACAAAAGAATAAAAATGTCTAGAAGGGTGTAGATGCAGACTAGTTGGTAGGTATTGCGACTACTATTGAAATACTGAGATTTACATCACATCCCCTCCATGAATTGGAAAATAAAGAGAACTAAACTTAATGGCGAAGGTTTGAT
AAGGGATAGTAAAGAGAGTTTAGATTACGGGGAAGAGTTGGAAAAATAATGAGAATTTGATTACGGGGAAGGTTTGAGAAGGGATTAATTATCATATACAAAATCGCCCGGTGGAATTTCCATCTTGTCATCAGGTGGGTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCG
AATTCTCTTGAAACTTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTGTTTTTGTATCTTGGGTGTGTGTTCTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTGAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTACAATTAATCAGAATGAAATACAAGTGACCACTCAGGGG
TTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGA
GGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGG
GGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTT
CTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTACCATGTCTATATGGTTTGCATTAGTATAAATT
>TRINITY_DN45960_c0_g1_i9 from sample A7 / Example unspliced isoform:GTTCATACATGCACTGAGTAGAAAATTCTGCGAAAGAGAAAGAAATAAAAAAGACACAAAAGAATAAAAATGTCTAGAAGGGTGTAGATGCAGACTAGTTGGTAGGTATTGCGACTACTATTGAAATACTGAGATTTACATCACATCCCCTCCATGAATTGGAAAATAAAGAGAACTAAACTTAATGGCGAAGGTTTGAT
AAGGGATAGTAAAGAGAGTTTAGATTACGGGGAAGAGTTGGAAAAATAATGAGAATTTGATTACGGGGAAGGTTTGAGAAGGGATTAATTATCATATACAAAATCGCCCGGTGGAATTTCCATCTTGTCATCAGGTGGGTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCG
AATTCTCTTGAAACTTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTGTTTTTGTATCTTGGGTGTGTGTTCTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTGAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTACAATTAATCAGAATGAAATACAAGTGACCACTCAGGGG
TTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGA
GGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGG
GGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTT
CTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAgtgggtaactaaatgtcaattgtacgtgcctatgtgttaactttgtgaataaccagtggatttaaatggtttaggtcatatagtattgg
attccacgtgagttttagcaggggttccgggatcacatgttaatgtgaaattttgtggaacatagtagaatttgttatcctttgtgacactgattagtactgaattcaaaacctgattcattgtgcttcgccatgtatatatgctctgtacagGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTAC
CATGTCTATATGGTTTGCATTAGTATAAATT
Intron 6 GTAAGTAGTA ... TCCACTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.79 | 164.5 | 13 | 29 |
| A2 | 14.91 | 138 | 3 | 26.5 |
| A3 | 12.87 | 168 | 4 | 28 |
| A4 | 16.8 | 98 | 7 | 21 |
| A5 | 9.16 | 66 | 2 | 7 |
| A6 | 11.25 | 930.5 | 3 | 133 |
| A7 | 12.95 | 1012 | 16 | 170 |
| A8 | 14.12 | 847.5 | 16 | 159 |
| A9 | 12 | 807.5 | 8 | 126 |
| A10 | 13.61 | 689 | 7 | 125.5 |
>TRINITY_DN100712_c0_g1_i1 from sample A4 / Example spliced isoformCAAAAATCATTTACCTGCTCGAACTCTGCTCCCGCTCCCGACATATCTCGACCTCTAACTATGCTCACGCTCGAACTCTAGTGCATTTACCATCCTGGAGTTGTTTCTGCGATGGTCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGGCATTCCAGCGTTGGGAAGGTGATGCGCCTAAGCAATGCGCAAGCTCCATTGC
AGCAACGTTTGAAGCTATGAGGGGGGTTTCGCTGGGTTTTGCCAAGGGGATTTGTGGGTTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCGAATTCTCTTGAAAATTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTCTTTTTGTATCTTGGGTGTGTGTTCTTTGTGG
GTCTGAAATCAAGGGCATAGCTGGGCTTTTGAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTACAATTAATCAGAATGAAATACAAGTGACCACTCAGGGGTTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGG
CCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGAGGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTG
CCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTAC
>TRINITY_DN100712_c0_g1_i4 from sample A4 / Example unspliced isoform:TAGCTATTGGTGAAATAATCAAAGTAAGTGCATTTTATATTTGTAGGAAATTTTCTTGAATTTTATGCTTCTAGTTTTTAACGTTCTTCTTGTGAATTTTCATTTCAAAGGCTCAAAGCATATTTTATAACATTTTTGTTTGTCTACACAATTCTGTTGTCATTGTAGAGAAGAGTTCCTGGTCTACATCAGATTACAGC
AATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGAGGGGTTGTTGCCgtaagtagtattgtgataacttcagaatttgaagctcattatgctaatttgaatattaaaagaaatagcattcaacgtaagcttgttccctagctatgttttccagcttttttcactatgtggagaaagtgtcacctgcaata
tggttgtttttattattataactaattagagtggtcatgtctagcattcaatgatgagcgtagacttcattattatgataaccggcggtaacttttatcatgcttgtgtactttgttttaactgtgttggattggtctgtataatgaattactgatttgccttttccactctagCTTGGAGACAACTCGACATGTTTCAA
TGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGGTAAGAATTTAGATTGAAGCTACTGTGCACTTGATTACATGGATTAGTGTTGAAGTTCATTACTCTGGTTCATCAAAATTTAGGTTCAAGTTTCTGCGCATTTAATTACATTGATTAGTATCGAAGTTCATTATTAATCAATTTGTACAAC
TGTTGCTTCTTTCAGTGATGCAACTGGATACACTTTCAATTTTTGTATTTGATGAGTTTTAAATTGCAGTGTTAGTACATCATGTTATTAGCTTGTCTTTTCTGATCTCTTTTGTTTCCTTAAACTGCAGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGA
AGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTAC
Intron 7 GTAAGAATTT ... TAAACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.46 | 156.4 | 4.5 | 33 |
| A2 | 20.1 | 135.7 | 1.4 | 34.3 |
| A3 | 14.52 | 150.5 | 2.8 | 25.5 |
| A4 | 22.08 | 126.2 | 5.9 | 36 |
| A5 | 23.08 | 81 | 2.8 | 24.1 |
| A6 | 14.23 | 940.8 | 4.5 | 156.8 |
| A7 | 17.22 | 1054.8 | 11.3 | 220.9 |
| A8 | 16.29 | 962.3 | 9.1 | 189.6 |
| A9 | 18.14 | 923.1 | 1.4 | 205.8 |
| A10 | 16.59 | 774.6 | 5.4 | 155.6 |
>TRINITY_DN119456_c0_g1_i6 from sample A1 / Example spliced isoformAACAAAACCAAAAATCATTTACCTGCTCGAACTCTGCTCCCGCTCCCGACATATCTCGACCTCTAACTATGCTCACGCTCGAACTCTAGTGCATTTACCATCCTGGAGTTGTTTCTGCGATGGTCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGGCATTCCAGCGTTGGGAAGGTGATGCGCCTAAGCAATGCGCAAGC
TCCATTGCAGCAACGTTTGAAGCTATGAGGGGGGTTTCGCTGGGTTTTGCCAAGGGGATTTGTGGGTTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCGAATTCTCTTGAAAATTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTCTTTTTGTATCTTGGGTGTGTGTT
CTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTCAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTACAATTAATCAGAATGAAATACAAGTGACCACTCAGGGGTTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAA
GCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGAGGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATCATTCTTTCATTGAATGAACTTGA
TGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATG
TTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTTCTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGA
GCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTATTGGATTCCACGTGAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATT
TGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATTCTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTACCATGTCTATATGGTTTGCATTAGTATAAATTAATTGTTTTGGTATGAATGCATCCTGTATGTTTCCCATAAA
TTCAATTGGAAAAGTATTTAAAGTTTGTTA
>TRINITY_DN119456_c0_g1_i1 from sample A1 / Example unspliced isoform:GATGAGCGTAGACTTCATTATTATGATAACCAGCGGTAACTTTTATCATGCTTGTGTACTTTGTTTTAACTGTGTTGGATTGGTCTGTATAATGAATTACTGATTTGCCTTTTCCACTCTAGCTTGGAGACAACTCGACATGTTTCAATGATTACAATCATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGgta
agaatttagattgaagctactgtgcacttgattacatggattagtgttgaagttcattactctggttcatcaaaatttaggttcaagtttctgcgcatttaattacattgattagtatcgaagttcattattaatcaatttgtacaactgttgcttctttcagtgatgcaactggatacactttcaatttttgtatttga
tgagttttaacttgcagtgttagtacatcatgttattagcttgtcttttctgatctcttttgtttccttaaactgcagTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAG
AAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTTCTCAAGTCC
TGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTATTGGATTCCACGT
GAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATTTGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATTCTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTACCATGTCTAT
ATGGTTTGCATTAGTATAAATTAATTGTTTTGGTATGAATGCATCCTGTATGTTTCCCATAAATTCAATTGGAAAAGTATTTAAAGTTTGTTA
Intron 8 GTAAGTCCTG ... TGAATGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.88 | 482 | 62.3 | 143 |
| A2 | 18.57 | 470 | 62 | 107.2 |
| A3 | 17.22 | 552 | 96.7 | 114.8 |
| A4 | 20.22 | 430 | 68.3 | 109 |
| A5 | 16.79 | 337 | 56.3 | 68 |
| A6 | 14.79 | 2679 | 367 | 465.2 |
| A7 | 13.78 | 2599 | 441 | 415.5 |
| A8 | 16.52 | 1833 | 270.5 | 362.7 |
| A9 | 14.8 | 2780.8 | 466.8 | 483 |
| A10 | 15.94 | 2496 | 407 | 473.3 |
>TRINITY_DN119456_c0_g1_i6 from sample A1 / Example spliced isoformAACAAAACCAAAAATCATTTACCTGCTCGAACTCTGCTCCCGCTCCCGACATATCTCGACCTCTAACTATGCTCACGCTCGAACTCTAGTGCATTTACCATCCTGGAGTTGTTTCTGCGATGGTCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGGCATTCCAGCGTTGGGAAGGTGATGCGCCTAAGCAATGCGCAAGC
TCCATTGCAGCAACGTTTGAAGCTATGAGGGGGGTTTCGCTGGGTTTTGCCAAGGGGATTTGTGGGTTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCGAATTCTCTTGAAAATTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTCTTTTTGTATCTTGGGTGTGTGTT
CTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTCAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTACAATTAATCAGAATGAAATACAAGTGACCACTCAGGGGTTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAA
GCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGAGGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATCATTCTTTCATTGAATGAACTTGA
TGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATG
TTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTTCTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGA
GCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTATTGGATTCCACGTGAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATT
TGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATTCTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTACCATGTCTATATGGTTTGCATTAGTATAAATTAATTGTTTTGGTATGAATGCATCCTGTATGTTTCCCATAAA
TTCAATTGGAAAAGTATTTAAAGTTTGTTA
>TRINITY_DN119456_c0_g1_i8 from sample A1 / Example unspliced isoform:AACAAAACCAAAAATCATTTACCTGCTCGAACTCTGCTCCCGCTCCCGACATATCTCGACCTCTAACTATGCTCACGCTCGAACTCTAGTGCATTTACCATCCTGGAGTTGTTTCTGCGATGGTCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGGCATTCCAGCGTTGGGAAGGTGATGCGCCTAAGCAATGCGCAAGC
TCCATTGCAGCAACGTTTGAAGCTATGAGgtaagtcctgtaacttatgacgtttttggttggaaatttgtagaggttaattcatttaccattcttttcatatttaacctttgttctctgtttgaatgccagGGGGGTTTCGCTGGGTTTTGCCAAGGGGATTTGTGGGTTTGTGGGAAGAGGAAAAGACTTGTAACTCCA
AACACCTCAAATACCCTCCATACCCTACCGAATTCTCTTGAAAATTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTCTTTTTGTATCTTGGGTGTGTGTTCTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTCAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTACAATTAAT
CAGAATGAAATACAAGTGACCACTCAGGGGTTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAG
CATAACAGATGTTTGGGAGCCAATTGAAGAGGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATCATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAG
GAAGAGGCAGAGGCTGGGGTAGAGTATGGGGGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGG
CCAGCAGCAGCTGAGGTTGCAGCCTGAGTTCTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGG
ATTTAAATGGTTTAGGTCATATAGTATTGGATTCCACGTGAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATTTGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATTCTCTGTACAGGAAAATTACAGCTTGAG
GCATTCATGTGAGTATTCATTATTCTTTACCATGTCTATATGGTTTGCATTAGTATAAATTAATTGTTTTGGTATGAATGCATCCTGTATGTTTCCCATAAATTCAATTGGAAAAGTATTTAAAGTTTGTTA
Intron 9 GTAAGTAGTA ... TCCACTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.92 | 164.4 | 39.4 | 6 |
| A2 | 16.92 | 138 | 29.4 | 7 |
| A3 | 13.61 | 168 | 27.3 | 3 |
| A4 | 13.55 | 98 | 15.6 | 9 |
| A5 | 14.26 | 66 | 11.3 | 2 |
| A6 | 12.68 | 930.4 | 140.7 | 6 |
| A7 | 14.17 | 1013 | 173.9 | 18 |
| A8 | 12.15 | 847.9 | 120.8 | 18 |
| A9 | 12.47 | 807.4 | 119.2 | 4 |
| A10 | 12.25 | 689 | 99.6 | 8 |
>TRINITY_DN40429_c0_g8_i1 from sample A6 / Example spliced isoformGTTCATACATGCACTGAGTAGAAAATTCTGCGAAAGAGAAAGAAATAAAAAAGACACAAAAGAATAAAAATGTCTAGAAGGGTGTAGATGCAGACTAGTTGGTAGGTATTGCGACTACTATTGAAATACTGAGATTTACATCACATCCCCTCCATGAATTGGAAAATAAAAAGAACTAAACTTAATGGCGAAGGTTTGAT
AAGGGATAGTAAAGAGAGTTTAGATTACGGGGAAGAGTTGGAAAAATAATGAGAATTTGATTACGGGGAAGGTTTGAGAAGGGATTAATTATCATATACAAAATCGCCCGGTGGAATTTCCATCTTGTCATCAGGTGGGTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCG
AATTCTCTTGAAACTTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTGTTTTTGTATCTTGGGTGTGTGTTCTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTCAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTGCAATTAATCAGAATGAAATACGAGTGACCACTCAGGGG
TTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGA
GGGGTTGTTGCCCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTGCCACGGGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGG
GGAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTT
CTCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTATTGG
ATTCCACGTGAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATTTGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATGCTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTAC
CATGTCTATATGGTTTGCATTAGTATAAATTAATTGTTTTGGTAC
>TRINITY_DN40429_c0_g8_i2 from sample A6 / Example unspliced isoform:GTTCATACATGCACTGAGTAGAAAATTCTGCGAAAGAGAAAGAAATAAAAAAGACACAAAAGAATAAAAATGTCTAGAAGGGTGTAGATGCAGACTAGTTGGTAGGTATTGCGACTACTATTGAAATACTGAGATTTACATCACATCCCCTCCATGAATTGGAAAATAAAAAGAACTAAACTTAATGGCGAAGGTTTGAT
AAGGGATAGTAAAGAGAGTTTAGATTACGGGGAAGAGTTGGAAAAATAATGAGAATTTGATTACGGGGAAGGTTTGAGAAGGGATTAATTATCATATACAAAATCGCCCGGTGGAATTTCCATCTTGTCATCAGGTGGGTTGTGGGAAGAGGAAAAGACTTGTAACTCCAAACACCTCAAATACCCTCCATACCCTACCG
AATTCTCTTGAAACTTGAAACGGTCTCCAGTTGCCAAATTTCCATTGTGTTTTTGTATCTTGGGTGTGTGTTCTTTGTGGGTCTGAAATCAAGGGCATAGCTGGGCTTTTCAGGGCGCCATGGATAGATATCAGAGGGTGGAGAGGCCGAAGGCTGAGACTGCAATTAATCAGAATGAAATACGAGTGACCACTCAGGGG
TTGATAAGGAATTATGTCAGTTATGCCTCTAGCCTCTTGCAGGACAAGGCGACGCCAGAGATTGTGTTGAAAGCAATGGGCCAAGCCATCAGCAAGGCTGTAGCTATTGGTGAAATAATCAAAAGAAGAGTTCCTGGTCTACATCAGATTACAGCAATCAGCTCAACAAGCATAACAGATGTTTGGGAGCCAATTGAAGA
GGGGTTGTTGCCgtaagtagtattatgataacttcagaatttgaagctcattatgctaatttgaatattaaaagaaatagcattcaacgtaagcttgttccctggctatgttttccagcttttttcactatgtggagaaagtgtcacctgcaatatggttgtttttattattaaaactaattagagtggtcatgtctagc
attcaatgatgagcgtagacttcagtattatgataaccagcggtaaacttttatcatgcttgtgtactttgttttaactgtgttggattggtctgtataatgaattactgatttgccttttccactctagCTTGGAGACAACTCGACATGTTTCAATGATTACAATTATTCTTTCATTGAATGAACTTGATGCTACTGCC
ACGGGGTAAGAATTTAGATTGAAGCTACTGTGCACTTGATTACATGGATTAGTGTTGAAGTTCATTACTCTGGTTCATCAAAATTTAGGTTCAAGTTTCTGCGCATTTAATTACATTGATTAGTATCGAAGTTCATTATTAATCAATTTGTACAACTGTTGCTTCTTTCAGTGATGCAACTGGATACACTTTCAATTTTT
GTATTTGATGAGTTTTAACTTGCAGTGTTAGTACATCATGTTATTAGCTTGTCTTTTCTGATCTCTTTTGTTTCCTTAAACTGCAGTTATCAGGCTCCACAAACCAAACAGCTAGTGGGTGTCAGTGTTGAAGGTGGCAGGGGTAGAGGTCGCGGAAGAGGGAGAGGAGGAAGAGGCAGAGGCTGGGGTAGAGTATGGGG
GAGATCAGAAAATGGTGGTTCATATGAAGATGAAGGCTATAATGGCTACTACAATGGTGGGGGATGGCATGTTGGTTGGGGCCGTGGCCGTGGTAGAGGGCGTGGAGTATTTCGTGGGCGTGGAAGAGGAAGGGGCAGAGAAAGAGGAAGAAGAGGAGGGGGTAGGGGGCCAGCAGCAGCTGAGGTTGCAGCCTGAGTTC
TCAAGTCCTGGATCACATTTTTGCTCACAACTCAATGTTCTATTGAGTTCTGGTGCAAATTTCATATATGAGCTTGATGTCAAAAGCAGCTTGGTTCTGGAAATAAAGAAGTGGGTAACTAAATGTCAATTGTTCGTGCCTATGTGTTAACTTTGTGAATAACCAGTGGATTTAAATGGTTTAGGTCATATAGTATTGGA
TTCCACGTGAGTTTTAGCAGGGGTTCCGGGATCACATGTTAATGTGAAATTTTGTGGAACATAGTAGAATTTGTTATCCTTTGTGACACTGATTAGTACTGAATTCAAAACCTGATTCATTGTGCTTCGCCATGTATATATGCTCTGTACAGGAAAATTACAGCTTGAGGCATTCATGTGAGTATTCATTATTCTTTACC
ATGTCTATATGGTTTGCATTAGTATAAATTAATTGTTTTGGTAC
Intron 10 GTTTGGATTC ... CATGCTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.38 | 5 | 27 | 6 |
| A2 | 83.33 | 10 | 50 | 6 |
| A3 | 84.85 | 5 | 28 | 9 |
| A4 | 66.67 | 4 | 8 | 6 |
| A5 | 92.31 | 1 | 12 | 0 |
| A6 | 84.73 | 60 | 333 | 11 |
| A7 | 82.96 | 53 | 258 | 15 |
| A8 | 83.98 | 79 | 414 | 17 |
| A9 | 82.28 | 70 | 325 | 4 |
| A10 | 83.72 | 35 | 180 | 19 |
>TRINITY_DN44225_c0_g3_i8 from sample A8 / Example spliced isoformAAAACAAAAAACAAAAAACAAAAAACAAAACCAGAAATCATTTACCTGCTCGAACTTTGCTCCCGCTCCCGACCTATCCCGAACTTTTCTCACGCTCGAACCCTAGTGCATTTACCATCCTGAATTGTTTCTGCGATGGCCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGCCATTCCAGCGTTGGGAAGGTGACGCGCC
TGAGCAATGCGCAGGCTCCATTGCAACAAGTTTGAAGCAGTGAGGTAAGTCCTTTAATTTATGGCGTTTTTGGTTGGCAATTTGTAGAGGTTAATTCATTTACCATTCTTTTCATATTTAACCTTTGTTCTCTGTTTGAATGCCGAGGGTTTCGCTGGGCGCTCTACGTTGGGGTTTGGCTTGAAGTTGAAAAAGCCCGG
GTAGTGGAAGCTTGGCCCCATTGGTCCTGGAGAGCCATTTTTCTATTGGTATGGAATCCATTGTAGGCTGTACATGTCAGAACCAGAGCTAATCAAGGAAGTTTTATCGAATAAATTCGGTCATTATGAGAAGGAGACCCCGGGCCTCTTTTATTGGCTTTGCTCGGGCGGGGACTGGTTTTTGTAGATGGATTGAGATG
GGTCAAGCACAGGAGGATCGTGAGCCCTGTCTTCAATGTTGATACTTGATAAACTTAAGAATTGGCTAGAGATGGTGGCTCAGACAGACTCTGACGGCAAAGAAATTGATGTTCATCAAGAGTTGAGAGCATTAACAGCAGACATCATATCGCATACCGCTTTCGGTAGCAGTTACAATGAAGGCAAAGAAGTATTCGAA
TTGCAGAGAGAATTACAAGAAATGGCGGCCAAAGCTGAACAATCTGTCTTCATCCCAGGAAGCCAGTAATTACAGTATACTTAGCTTTCAATTATATAGTTTTGCATGTGACTGCAAGTTCTCTAGTACTTCGACTTCTGTGCTCCTGTTTTCTTTTTAACGTACTTTGTGACGTGCTGTGCTTAGGCTAGTGCCATAAT
CTGTAGACCTTTTACTTATTCACAAGGGTCTTCTTAGTGCTGTACACAGTCCATAAATCTTCTACACAATCATAATGACTCATAGTACTTATAATTAAGGATTTTGTACTTATATTCCTTGGATTTTTGGCAGATATATTCCTACAGGAAAGAACAGGTATGCCTGGAAGATCGATAGAAGAATTAAAGAAATCCTGAAT
TCTCTAATTCAAAGTAGGTTGGAACCGAGAACAACAAAAAGAACTCACGTTGGCTATGGAAATGACCTACTTGGAATCATGATGACTGCCAACCAGACAGAATTGAGTGCGACTCAAAGAAATCTGAGCATGACTATTGATGAAATCATGGATGAATGCAAGGAATTTTTCTTTGCAGGCCATGATACAACTTCCAATCT
GTTAACCTGGGCAGTATTTTTGCTGGCGATAAATTTGGAATGGCAAGAAATATTAAGGAAAGAAGTTATCAGTATTTGTGGCACAGATATACCAGATGCAGACATGCTTACCAGGATGAAATCGGTGTGTATTCCATATCATTTTTTTTTAATATTTTTAATCAACCATATTGCAGCCATCAATTTTGTTTGAAAAAATC
ATCATATATTTCATTAGGACTCAATACAAATGTGCCTAAAAATGTCCAGAATTCTGGTTTAGATCTATATAGG
>TRINITY_DN44225_c0_g3_i11 from sample A8 / Example unspliced isoform:AAAACAAAAAACAAAAAACAAAAAACAAAACCAGAAATCATTTACCTGCTCGAACTTTGCTCCCGCTCCCGACCTATCCCGAACTTTTCTCACGCTCGAACCCTAGTGCATTTACCATCCTGAATTGTTTCTGCGATGGCCACTTGAGTGAGGAGGGCCAAGGGCTCTCGGCCATTCCAGCGTTGGGAAGGTGACGCGCC
TGAGCAATGCGCAGGCTCCATTGCAACAAGTTTGAAGCAGTGAGGGTTTCGCTGGGCGCTCTACGTTGGGGTTTGGCTTGAAGTTGAAAAAGCCCGGGTAGTGGAAGCTTGGCCCCATTGGTCCTGGAGAGCCATTTTTCTATTGGTATGGAATCCATTGTAGGCTGTACATGTCAGAACCAGAGCTAATCAAGGAAGTT
TTATCGAATAAATTCGGTCATTATGAGAAGGAGACCCCGGGCCTCTTTTATTGGCTTTGCTCGGGCGGGGACTGGTTTTTGTAGATGGATTGAGATGGGTCAAGCACAGGAGGATCGTGAGCCCTGTCTTCAATGTTGATACTTGATAAACTTAAGgtttggattcttggaatgtcatacaatggctgtataataagact
tgataatggatgaagaactaataagacttgataatggatgaagaactataacagtttcttgagtaatgaatgaaaatttctggcaattcagaaacaattgtcactttgcatgtctagaactattgaatgtaggtatgcttatacagagcataaaaaacacttgaatatatgcaccaagttgttatcaatctatgcttaca
atttgaccatattatgcctttgcagacctccctagccatgttacagggaaatggtaggttgtttaataaatatggagttaatggcacatatatacctagttattatcaatctatcttaaaaaaaattgaagatataatgctcatacaaatctcccaatgccatctagagtgaaaacgtgggtgcctaataattataccta
ataaggatacagttaagcaatttaagaggaaaaagctttatcagattcatcaacagtgaaaagacagacttttgaattgtagcaaattttataaatgacattgatatcttcacctcaagagtgttttcctctatcaagtcaaattatattttatatgctgtgaatttgcctactaaacaaggatatgcattacctagact
atttttggatagtccccggtagttggagtcttttagaatataccactggttttagttatgctctactgtttccaatggcaaacaatggtgaagataatggttgcttgcacttcatccatgctcaagAATTGGCTAGAGATGGTGGCTCAGACAGACTCTGACGGCAAAGAAATTGATGTTCATCAAGAGTTGAGAGCATT
AACAGCAGACATCATATCGCATACCGCTTTCGGTAGCAGTTACAATGAAGGCAAAGAAGTATTCGAATTGCAGAGAGAATTACAAGAAATGGCGGCCAAAGCTGAACAATCTGTCTTCATCCCAGGAAGCCAGTAATTACAGTATACTTAGCTTTCAATTATATAGTTTTGCATGTGACTGCAAGTTCTCTAGTACTTCG
ACTTCTGTGCTCCTGTTTTCTTTTTAACGTACTTTGTGACGTGCTGTGCTTAGGCTAGTGCCATAATCTGTAGACCTTTTACTTATTCACAAGGGTCTTCTTAGTGCTGTACACAGTCCATAAATCTTCTACACAATCATAATGACTCATAGTACTTATAATTAAGGATTTTGTACTTATATTCCTTGGATTTTTGGCAG
ATATATTCCTACAGGAAAGAACAGGTATGCCTGGAAGATCGATAGAAGAATTAAAGAAATCCTGAATTCTCTAATTCAAAGTAGGTTGGAACCGAGAACAACAAAAAGAACTCACGTTGGCTATGGAAATGACCTACTTGGAATCATGATGACTGCCAACCAGACAGAATTGAGTGCGACTCAAAGAAATCTGAGCATGA
CTATTGATGAAATCATGGATGAATGCAAGGAATTTTTCTTTGCAGGCCATGATACAACTTCCAATCTGTTAACCTGGGCAGTATTTTTGCTGGCGATAAATTTGGAATGGCAAGAAATATTAAGGAAAGAAGTTATCAGTATTTGTGGCACAGATATACCAGATGCAGACATGCTTACCAGGATGAAATCGGTGTGTATT
CCATATCATTTTTTTTTAATATTTTTAATCAACCATATTGCAGCCATCAATTTTGTTTGAAAAAATCATCATATATTTCATTAGGACTCAATACAAATGTGCCTAAAAATGTCCAGAATTCTGGTTTAGATCTATATAGG